AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459610 MtrunA17_Chr3g0143501 87.470 423 53 0 1 423 1 423 0.0 771
Msa1459610 MtrunA17_Chr3g0143521 93.333 255 17 0 70 324 1 255 8.33e-175 488
Msa1459610 MtrunA17_Chr3g0143511 96.552 58 2 0 370 427 19 76 1.32e-34 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 97 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCAGCTTCATCAAATT+TGG 0.134844 tig0040377:-8321 Msa1459610:intergenic
TGGGCTTCAGGTTGGCAATT+TGG 0.174820 tig0040377:-7569 Msa1459610:intergenic
TTGGCTTGTGTTTCCAAATA+TGG 0.194285 tig0040377:+8700 Msa1459610:CDS
CATTTAGCGTCCTTGATTTA+AGG 0.195088 tig0040377:+7706 Msa1459610:CDS
AACTTCTTTAGCTGATAATA+TGG 0.239934 tig0040377:-8225 Msa1459610:intergenic
GTTGTATATGCACCCATATT+TGG 0.244783 tig0040377:-8713 Msa1459610:intergenic
CGGAGGAGGAGCTCACATTT+TGG 0.255015 tig0040377:-8029 Msa1459610:intergenic
GGGCTTCAGGTTGGCAATTT+GGG 0.261179 tig0040377:-7568 Msa1459610:intergenic
GACAAGGATCTTGTTGTTAT+TGG 0.275664 tig0040377:+8380 Msa1459610:CDS
AAAATGAAAATTCTTGATAT+TGG 0.275753 tig0040377:+8278 Msa1459610:CDS
GGAGCAAAACCCATTGAAAT+TGG 0.277439 tig0040377:-8747 Msa1459610:intergenic
TTACACTTAACAGCGTAAAA+AGG 0.288780 tig0040377:-7780 Msa1459610:intergenic
ATTGGTGGTGGATTCACTTC+TGG 0.295664 tig0040377:+8296 Msa1459610:CDS
CTTAAATCAAGGACGCTAAA+TGG 0.304128 tig0040377:-7705 Msa1459610:intergenic
GGTGCATATACAACTTCTTC+TGG 0.309142 tig0040377:+8722 Msa1459610:CDS
GCGGCTGGCGCAGTCGAAAT+TGG 0.315367 tig0040377:-7844 Msa1459610:intergenic
TGGATCAATGATGGAATTTA+CGG 0.338014 tig0040377:+8491 Msa1459610:CDS
GCATCTTTGAGTGTCAAATA+TGG 0.350668 tig0040377:+8083 Msa1459610:CDS
ATTTAGCGTCCTTGATTTAA+GGG 0.350890 tig0040377:+7707 Msa1459610:CDS
CAATCGTTCACCTCAAGTTC+AGG 0.366769 tig0040377:-8680 Msa1459610:intergenic
AATCCAAACATTTCACTTGT+AGG 0.370462 tig0040377:+7801 Msa1459610:CDS
TAACCACCTTTGACTCTGTT+GGG 0.375313 tig0040377:+7979 Msa1459610:CDS
TCTTCTGGAACCAATTTCAA+TGG 0.383904 tig0040377:+8737 Msa1459610:CDS
TCTTTGTATGTAACATTCTC+AGG 0.402388 tig0040377:-8581 Msa1459610:intergenic
ACATGCACCCCACTTAGGTT+TGG 0.403271 tig0040377:+8551 Msa1459610:CDS
GGATAAAACAGATTCAATTT+CGG 0.407398 tig0040377:-7868 Msa1459610:intergenic
ATCAGCAGCTTTGAGAAGCT+TGG 0.407701 tig0040377:-8126 Msa1459610:intergenic
AATTTGGGATAGGGATTCTT+CGG 0.416647 tig0040377:-7553 Msa1459610:intergenic
CTTGTTGTTATTGGTGAACC+TGG 0.425304 tig0040377:+8389 Msa1459610:CDS
AGATTCAATTTCGGTGCGGC+TGG 0.435147 tig0040377:-7859 Msa1459610:intergenic
GTGGCGGGACTTAAAGTAAC+TGG 0.439278 tig0040377:+8149 Msa1459610:CDS
CTTCTGGAACCAATTTCAAT+GGG 0.439459 tig0040377:+8738 Msa1459610:CDS
ATAATTTATTCTTGCCCGAC+AGG 0.443813 tig0040377:-8803 Msa1459610:intergenic
TCAGGTTGGCAATTTGGGAT+AGG 0.448215 tig0040377:-7563 Msa1459610:intergenic
CAGGTTGGCAATTTGGGATA+GGG 0.452166 tig0040377:-7562 Msa1459610:intergenic
GTGCCTACAAGTGAAATGTT+TGG 0.453016 tig0040377:-7804 Msa1459610:intergenic
TGGCTTGTGTTTCCAAATAT+GGG 0.454466 tig0040377:+8701 Msa1459610:CDS
TAATTGATCTTATGAACAAA+TGG 0.458554 tig0040377:+7733 Msa1459610:CDS
TCAGCAGCTTTGAGAAGCTT+GGG 0.462319 tig0040377:-8125 Msa1459610:intergenic
TTAACCACCTTTGACTCTGT+TGG 0.464020 tig0040377:+7978 Msa1459610:CDS
CTCTTTGAGAACCGTATCAA+TGG 0.466778 tig0040377:-8648 Msa1459610:intergenic
AAAATTCTTGATATTGGTGG+TGG 0.474122 tig0040377:+8284 Msa1459610:CDS
TACCTTCCTCCGTCTTAATA+CGG 0.482251 tig0040377:-8049 Msa1459610:intergenic
CGGCTCCTCCACTGCCTATG+TGG 0.490949 tig0040377:-8181 Msa1459610:intergenic
CTCAAAGCTGCTGATGTGGC+GGG 0.492245 tig0040377:+8134 Msa1459610:CDS
TTTGAAACAGCTACACGGCT+TGG 0.493170 tig0040377:+8248 Msa1459610:CDS
CACCTTTGACTCTGTTGGGG+AGG 0.495065 tig0040377:+7983 Msa1459610:CDS
AGAGAGTATTGGATCAATGA+TGG 0.520184 tig0040377:+8482 Msa1459610:CDS
ATGAAAATTCTTGATATTGG+TGG 0.524512 tig0040377:+8281 Msa1459610:CDS
ATTAAGACGGAGGAAGGTAG+TGG 0.527699 tig0040377:+8053 Msa1459610:CDS
TTTGGTGCTTCAGGAGTGAA+AGG 0.530590 tig0040377:+7594 Msa1459610:CDS
AACTTGTGATGCCATTGATA+CGG 0.532310 tig0040377:+8637 Msa1459610:CDS
TTCTGTCGGGTGAAACGCCA+AGG 0.534531 tig0040377:-7890 Msa1459610:intergenic
TTGCATGTTCAAGTCCTGTC+GGG 0.538581 tig0040377:+8789 Msa1459610:CDS
TCACCTCAAGTTCAGGTAGC+AGG 0.539377 tig0040377:-8673 Msa1459610:intergenic
GCTTCTCAAAGCTGCTGATG+TGG 0.545870 tig0040377:+8130 Msa1459610:CDS
TTCTCACATGCACCCCACTT+AGG 0.546355 tig0040377:+8546 Msa1459610:CDS
TAACTCTGATTTACACGGGT+TGG 0.547050 tig0040377:-7922 Msa1459610:intergenic
CTCCGTATTAAGACGGAGGA+AGG 0.550571 tig0040377:+8047 Msa1459610:CDS
CTTGCATGTTCAAGTCCTGT+CGG 0.550768 tig0040377:+8788 Msa1459610:CDS
GTAGGCACATTAGCTTCACT+TGG 0.550820 tig0040377:+7819 Msa1459610:CDS
CAATTACAACCCTTAAATCA+AGG 0.551290 tig0040377:-7716 Msa1459610:intergenic
TCTCAAAGCTGCTGATGTGG+CGG 0.552805 tig0040377:+8133 Msa1459610:CDS
ATGTGTAACTCTGATTTACA+CGG 0.553353 tig0040377:-7927 Msa1459610:intergenic
ATTAAATATGCTGCAAGTGT+CGG 0.554694 tig0040377:+7948 Msa1459610:CDS
AACCACCTTTGACTCTGTTG+GGG 0.557898 tig0040377:+7980 Msa1459610:CDS
GTTTCCGAAAAGTAACGGCC+AGG 0.558733 tig0040377:-8407 Msa1459610:intergenic
TCCTAAAACTTACCCATCAA+CGG 0.560643 tig0040377:+8604 Msa1459610:CDS
AACCTCCCCAACAGAGTCAA+AGG 0.562889 tig0040377:-7985 Msa1459610:intergenic
AGTTACAACTTTGTCATCAG+AGG 0.563388 tig0040377:+7623 Msa1459610:CDS
CTGAACTTGAGGTGAACGAT+TGG 0.567508 tig0040377:+8681 Msa1459610:CDS
AGGTTGAAAAGATAAAGAAA+TGG 0.568856 tig0040377:+8003 Msa1459610:CDS
TTGGCATAGATGATTCTGTC+GGG 0.569299 tig0040377:-7903 Msa1459610:intergenic
GATTCTTCGGCTACTAGTGT+AGG 0.578341 tig0040377:-7540 Msa1459610:intergenic
CCTCCGTCTTAATACGGAGG+AGG 0.581352 tig0040377:-8043 Msa1459610:intergenic
GGGATGAGCTGAGAGAGTAT+TGG 0.583313 tig0040377:+8471 Msa1459610:CDS
TGTGTAACTCTGATTTACAC+GGG 0.588484 tig0040377:-7926 Msa1459610:intergenic
AATTATTGGAAAACGTGTGA+GGG 0.589559 tig0040377:+8451 Msa1459610:CDS
GTACCTGCTACCTGAACTTG+AGG 0.601377 tig0040377:+8670 Msa1459610:CDS
AAATTATTGGAAAACGTGTG+AGG 0.602326 tig0040377:+8450 Msa1459610:CDS
CGACAGGACTTGAACATGCA+AGG 0.611121 tig0040377:-8787 Msa1459610:intergenic
AACTCATTTCGGAAATGACA+AGG 0.614579 tig0040377:+8364 Msa1459610:CDS
GTATCGTTCCACATAGGCAG+TGG 0.616728 tig0040377:+8173 Msa1459610:CDS
ATGTCGTTTCCGAAAAGTAA+CGG 0.625854 tig0040377:-8412 Msa1459610:intergenic
GTATCAATGGCATCACAAGT+TGG 0.627608 tig0040377:-8635 Msa1459610:intergenic
TCGTTCCACATAGGCAGTGG+AGG 0.632211 tig0040377:+8176 Msa1459610:CDS
GCTCCTCCTCCGTATTAAGA+CGG 0.645011 tig0040377:+8040 Msa1459610:CDS
GTTGGCATAGATGATTCTGT+CGG 0.646092 tig0040377:-7904 Msa1459610:intergenic
AAGGTAAATGTCCTTAGCTG+TGG 0.650676 tig0040377:-8768 Msa1459610:intergenic
GCCGATGCAAAAGCTTACCA+CGG 0.668156 tig0040377:+8200 Msa1459610:CDS
TCTGTCGGGTGAAACGCCAA+GGG 0.670155 tig0040377:-7889 Msa1459610:intergenic
ACTGGCGTATCGTTCCACAT+AGG 0.686836 tig0040377:+8167 Msa1459610:CDS
CCTCCTCCGTATTAAGACGG+AGG 0.688874 tig0040377:+8043 Msa1459610:CDS
AAACAGATTCAATTTCGGTG+CGG 0.697986 tig0040377:-7863 Msa1459600:intergenic
CTTCCTCCGTCTTAATACGG+AGG 0.698108 tig0040377:-8046 Msa1459600:intergenic
CTCCCCAACAGAGTCAAAGG+TGG 0.708675 tig0040377:-7982 Msa1459600:intergenic
TAGCTGATAATATGGCTCCG+TGG 0.725730 tig0040377:-8217 Msa1459600:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCAAGAATTTTCATTTT+TGG - tig0040377:8278-8297 Msa1459610:intergenic 15.0%
!! AAAATGAAAATTCTTGATAT+TGG + tig0040377:8278-8297 Msa1459610:CDS 15.0%
!!! ATATCAAGAATTTTCATTTT+TGG - tig0040377:8278-8297 Msa1459610:intergenic 15.0%
!! AAAATGAAAATTCTTGATAT+TGG + tig0040377:8278-8297 Msa1459610:CDS 15.0%
!! TAATTGATCTTATGAACAAA+TGG + tig0040377:7733-7752 Msa1459610:CDS 20.0%
!! ACATTAGCAACAAAAATTAT+TGG + tig0040377:8437-8456 Msa1459610:CDS 20.0%
!! TAATTGATCTTATGAACAAA+TGG + tig0040377:7733-7752 Msa1459610:CDS 20.0%
!! ACATTAGCAACAAAAATTAT+TGG + tig0040377:8437-8456 Msa1459610:CDS 20.0%
! GGATAAAACAGATTCAATTT+CGG - tig0040377:7871-7890 Msa1459610:intergenic 25.0%
! AGGTTGAAAAGATAAAGAAA+TGG + tig0040377:8003-8022 Msa1459610:CDS 25.0%
! AACTTCTTTAGCTGATAATA+TGG - tig0040377:8228-8247 Msa1459610:intergenic 25.0%
! ATGAAAATTCTTGATATTGG+TGG + tig0040377:8281-8300 Msa1459610:CDS 25.0%
! GATGCAATAAAAACTCATTT+CGG + tig0040377:8353-8372 Msa1459610:CDS 25.0%
! GGATAAAACAGATTCAATTT+CGG - tig0040377:7871-7890 Msa1459610:intergenic 25.0%
! AGGTTGAAAAGATAAAGAAA+TGG + tig0040377:8003-8022 Msa1459610:CDS 25.0%
! AACTTCTTTAGCTGATAATA+TGG - tig0040377:8228-8247 Msa1459610:intergenic 25.0%
! ATGAAAATTCTTGATATTGG+TGG + tig0040377:8281-8300 Msa1459610:CDS 25.0%
! GATGCAATAAAAACTCATTT+CGG + tig0040377:8353-8372 Msa1459610:CDS 25.0%
!!! AGCTGGTTTGGTTTTAATAA+CGG - tig0040377:7673-7692 Msa1459610:intergenic 30.0%
ATTTAGCGTCCTTGATTTAA+GGG + tig0040377:7707-7726 Msa1459610:CDS 30.0%
CAATTACAACCCTTAAATCA+AGG - tig0040377:7719-7738 Msa1459610:intergenic 30.0%
! CTTAACAGTTGGAAGTTTTA+TGG - tig0040377:7760-7779 Msa1459610:intergenic 30.0%
TTACACTTAACAGCGTAAAA+AGG - tig0040377:7783-7802 Msa1459610:intergenic 30.0%
AATCCAAACATTTCACTTGT+AGG + tig0040377:7801-7820 Msa1459610:CDS 30.0%
! ATTGAATCTGTTTTATCCCT+TGG + tig0040377:7873-7892 Msa1459610:CDS 30.0%
ATGTGTAACTCTGATTTACA+CGG - tig0040377:7930-7949 Msa1459610:intergenic 30.0%
ATTAAATATGCTGCAAGTGT+CGG + tig0040377:7948-7967 Msa1459610:CDS 30.0%
!!! AAGTTTTTGAAACAGCTACA+CGG + tig0040377:8243-8262 Msa1459610:CDS 30.0%
AAAATTCTTGATATTGGTGG+TGG + tig0040377:8284-8303 Msa1459610:CDS 30.0%
AAATTATTGGAAAACGTGTG+AGG + tig0040377:8450-8469 Msa1459610:CDS 30.0%
AATTATTGGAAAACGTGTGA+GGG + tig0040377:8451-8470 Msa1459610:CDS 30.0%
! TGGATCAATGATGGAATTTA+CGG + tig0040377:8491-8510 Msa1459610:CDS 30.0%
TCTTTGTATGTAACATTCTC+AGG - tig0040377:8584-8603 Msa1459610:intergenic 30.0%
!!! AGCTGGTTTGGTTTTAATAA+CGG - tig0040377:7673-7692 Msa1459610:intergenic 30.0%
ATTTAGCGTCCTTGATTTAA+GGG + tig0040377:7707-7726 Msa1459610:CDS 30.0%
CAATTACAACCCTTAAATCA+AGG - tig0040377:7719-7738 Msa1459610:intergenic 30.0%
! CTTAACAGTTGGAAGTTTTA+TGG - tig0040377:7760-7779 Msa1459610:intergenic 30.0%
TTACACTTAACAGCGTAAAA+AGG - tig0040377:7783-7802 Msa1459610:intergenic 30.0%
AATCCAAACATTTCACTTGT+AGG + tig0040377:7801-7820 Msa1459610:CDS 30.0%
! ATTGAATCTGTTTTATCCCT+TGG + tig0040377:7873-7892 Msa1459610:CDS 30.0%
ATGTGTAACTCTGATTTACA+CGG - tig0040377:7930-7949 Msa1459610:intergenic 30.0%
ATTAAATATGCTGCAAGTGT+CGG + tig0040377:7948-7967 Msa1459610:CDS 30.0%
!!! AAGTTTTTGAAACAGCTACA+CGG + tig0040377:8243-8262 Msa1459610:CDS 30.0%
AAAATTCTTGATATTGGTGG+TGG + tig0040377:8284-8303 Msa1459610:CDS 30.0%
AAATTATTGGAAAACGTGTG+AGG + tig0040377:8450-8469 Msa1459610:CDS 30.0%
AATTATTGGAAAACGTGTGA+GGG + tig0040377:8451-8470 Msa1459610:CDS 30.0%
! TGGATCAATGATGGAATTTA+CGG + tig0040377:8491-8510 Msa1459610:CDS 30.0%
TCTTTGTATGTAACATTCTC+AGG - tig0040377:8584-8603 Msa1459610:intergenic 30.0%
! AATTTGGGATAGGGATTCTT+CGG - tig0040377:7556-7575 None:intergenic 35.0%
AGTTACAACTTTGTCATCAG+AGG + tig0040377:7623-7642 Msa1459610:CDS 35.0%
CTTAAATCAAGGACGCTAAA+TGG - tig0040377:7708-7727 Msa1459610:intergenic 35.0%
CATTTAGCGTCCTTGATTTA+AGG + tig0040377:7706-7725 Msa1459610:CDS 35.0%
AAACAGATTCAATTTCGGTG+CGG - tig0040377:7866-7885 Msa1459610:intergenic 35.0%
TGTGTAACTCTGATTTACAC+GGG - tig0040377:7929-7948 Msa1459610:intergenic 35.0%
GCATCTTTGAGTGTCAAATA+TGG + tig0040377:8083-8102 Msa1459610:CDS 35.0%
CAATGCAGCTTCATCAAATT+TGG - tig0040377:8324-8343 Msa1459610:intergenic 35.0%
AACTCATTTCGGAAATGACA+AGG + tig0040377:8364-8383 Msa1459610:CDS 35.0%
!! GACAAGGATCTTGTTGTTAT+TGG + tig0040377:8380-8399 Msa1459610:CDS 35.0%
! ATGTCGTTTCCGAAAAGTAA+CGG - tig0040377:8415-8434 Msa1459610:intergenic 35.0%
!! AGAGAGTATTGGATCAATGA+TGG + tig0040377:8482-8501 Msa1459610:CDS 35.0%
! TTTTGAACCAAACCTAAGTG+GGG - tig0040377:8561-8580 Msa1459610:intergenic 35.0%
!! GTTTTGAACCAAACCTAAGT+GGG - tig0040377:8562-8581 Msa1459610:intergenic 35.0%
TCCTAAAACTTACCCATCAA+CGG + tig0040377:8604-8623 Msa1459610:CDS 35.0%
AACTTGTGATGCCATTGATA+CGG + tig0040377:8637-8656 Msa1459610:CDS 35.0%
!! TTGGCTTGTGTTTCCAAATA+TGG + tig0040377:8700-8719 Msa1459610:CDS 35.0%
! TGGCTTGTGTTTCCAAATAT+GGG + tig0040377:8701-8720 Msa1459610:CDS 35.0%
GTTGTATATGCACCCATATT+TGG - tig0040377:8716-8735 Msa1459610:intergenic 35.0%
!! TCTTCTGGAACCAATTTCAA+TGG + tig0040377:8737-8756 Msa1459610:CDS 35.0%
!! CTTCTGGAACCAATTTCAAT+GGG + tig0040377:8738-8757 Msa1459610:CDS 35.0%
! AATTTGGGATAGGGATTCTT+CGG - tig0040377:7556-7575 Msa1459610:intergenic 35.0%
AGTTACAACTTTGTCATCAG+AGG + tig0040377:7623-7642 Msa1459610:CDS 35.0%
CTTAAATCAAGGACGCTAAA+TGG - tig0040377:7708-7727 Msa1459610:intergenic 35.0%
CATTTAGCGTCCTTGATTTA+AGG + tig0040377:7706-7725 Msa1459610:CDS 35.0%
AAACAGATTCAATTTCGGTG+CGG - tig0040377:7866-7885 Msa1459610:intergenic 35.0%
TGTGTAACTCTGATTTACAC+GGG - tig0040377:7929-7948 Msa1459610:intergenic 35.0%
GCATCTTTGAGTGTCAAATA+TGG + tig0040377:8083-8102 Msa1459610:CDS 35.0%
CAATGCAGCTTCATCAAATT+TGG - tig0040377:8324-8343 Msa1459610:intergenic 35.0%
AACTCATTTCGGAAATGACA+AGG + tig0040377:8364-8383 Msa1459610:CDS 35.0%
!! GACAAGGATCTTGTTGTTAT+TGG + tig0040377:8380-8399 Msa1459610:CDS 35.0%
! ATGTCGTTTCCGAAAAGTAA+CGG - tig0040377:8415-8434 Msa1459610:intergenic 35.0%
!! AGAGAGTATTGGATCAATGA+TGG + tig0040377:8482-8501 Msa1459610:CDS 35.0%
! TTTTGAACCAAACCTAAGTG+GGG - tig0040377:8561-8580 Msa1459610:intergenic 35.0%
!! GTTTTGAACCAAACCTAAGT+GGG - tig0040377:8562-8581 Msa1459610:intergenic 35.0%
TCCTAAAACTTACCCATCAA+CGG + tig0040377:8604-8623 Msa1459610:CDS 35.0%
AACTTGTGATGCCATTGATA+CGG + tig0040377:8637-8656 Msa1459610:CDS 35.0%
!! TTGGCTTGTGTTTCCAAATA+TGG + tig0040377:8700-8719 Msa1459610:CDS 35.0%
! TGGCTTGTGTTTCCAAATAT+GGG + tig0040377:8701-8720 Msa1459610:CDS 35.0%
GTTGTATATGCACCCATATT+TGG - tig0040377:8716-8735 Msa1459610:intergenic 35.0%
!! TCTTCTGGAACCAATTTCAA+TGG + tig0040377:8737-8756 Msa1459610:CDS 35.0%
!! CTTCTGGAACCAATTTCAAT+GGG + tig0040377:8738-8757 Msa1459610:CDS 35.0%
! ACTCCTGAAGCACCAAAAAT+GGG - tig0040377:7591-7610 Msa1459610:intergenic 40.0%
!! TGAGTCATTTTCAGCTGGTT+TGG - tig0040377:7685-7704 Msa1459610:intergenic 40.0%
!! AATGGTGAGTCATTTTCAGC+TGG - tig0040377:7690-7709 Msa1459610:intergenic 40.0%
GCGTAAAAAGGCTTAACAGT+TGG - tig0040377:7771-7790 Msa1459610:intergenic 40.0%
GTGCCTACAAGTGAAATGTT+TGG - tig0040377:7807-7826 Msa1459610:intergenic 40.0%
TTGGCATAGATGATTCTGTC+GGG - tig0040377:7906-7925 Msa1459610:intergenic 40.0%
GTTGGCATAGATGATTCTGT+CGG - tig0040377:7907-7926 Msa1459610:intergenic 40.0%
TAACTCTGATTTACACGGGT+TGG - tig0040377:7925-7944 Msa1459610:intergenic 40.0%
TTAACCACCTTTGACTCTGT+TGG + tig0040377:7978-7997 Msa1459610:CDS 40.0%
TAACCACCTTTGACTCTGTT+GGG + tig0040377:7979-7998 Msa1459610:CDS 40.0%
TACCTTCCTCCGTCTTAATA+CGG - tig0040377:8052-8071 Msa1459610:intergenic 40.0%
!! CTTGTTGTTATTGGTGAACC+TGG + tig0040377:8389-8408 Msa1459610:CDS 40.0%
!!! GGTTTTGAACCAAACCTAAG+TGG - tig0040377:8563-8582 Msa1459610:intergenic 40.0%
!! ACCGTTGATGGGTAAGTTTT+AGG - tig0040377:8608-8627 Msa1459610:intergenic 40.0%
! ACTTACCCATCAACGGTTTT+TGG + tig0040377:8611-8630 Msa1459610:CDS 40.0%
TTGGTCCAAAAACCGTTGAT+GGG - tig0040377:8619-8638 Msa1459610:intergenic 40.0%
GTATCAATGGCATCACAAGT+TGG - tig0040377:8638-8657 Msa1459610:intergenic 40.0%
! CTCTTTGAGAACCGTATCAA+TGG - tig0040377:8651-8670 Msa1459610:intergenic 40.0%
GGTGCATATACAACTTCTTC+TGG + tig0040377:8722-8741 Msa1459610:CDS 40.0%
GGAGCAAAACCCATTGAAAT+TGG - tig0040377:8750-8769 Msa1459610:intergenic 40.0%
AAGGTAAATGTCCTTAGCTG+TGG - tig0040377:8771-8790 Msa1459610:intergenic 40.0%
! ACTCCTGAAGCACCAAAAAT+GGG - tig0040377:7591-7610 Msa1459610:intergenic 40.0%
!! TGAGTCATTTTCAGCTGGTT+TGG - tig0040377:7685-7704 Msa1459610:intergenic 40.0%
!! AATGGTGAGTCATTTTCAGC+TGG - tig0040377:7690-7709 Msa1459610:intergenic 40.0%
GCGTAAAAAGGCTTAACAGT+TGG - tig0040377:7771-7790 Msa1459610:intergenic 40.0%
GTGCCTACAAGTGAAATGTT+TGG - tig0040377:7807-7826 Msa1459610:intergenic 40.0%
TTGGCATAGATGATTCTGTC+GGG - tig0040377:7906-7925 Msa1459610:intergenic 40.0%
GTTGGCATAGATGATTCTGT+CGG - tig0040377:7907-7926 Msa1459610:intergenic 40.0%
TAACTCTGATTTACACGGGT+TGG - tig0040377:7925-7944 Msa1459610:intergenic 40.0%
TTAACCACCTTTGACTCTGT+TGG + tig0040377:7978-7997 Msa1459610:CDS 40.0%
TAACCACCTTTGACTCTGTT+GGG + tig0040377:7979-7998 Msa1459610:CDS 40.0%
TACCTTCCTCCGTCTTAATA+CGG - tig0040377:8052-8071 Msa1459610:intergenic 40.0%
!! CTTGTTGTTATTGGTGAACC+TGG + tig0040377:8389-8408 Msa1459610:CDS 40.0%
!!! GGTTTTGAACCAAACCTAAG+TGG - tig0040377:8563-8582 Msa1459610:intergenic 40.0%
!! ACCGTTGATGGGTAAGTTTT+AGG - tig0040377:8608-8627 Msa1459610:intergenic 40.0%
! ACTTACCCATCAACGGTTTT+TGG + tig0040377:8611-8630 Msa1459610:CDS 40.0%
TTGGTCCAAAAACCGTTGAT+GGG - tig0040377:8619-8638 Msa1459610:intergenic 40.0%
GTATCAATGGCATCACAAGT+TGG - tig0040377:8638-8657 Msa1459610:intergenic 40.0%
! CTCTTTGAGAACCGTATCAA+TGG - tig0040377:8651-8670 Msa1459610:intergenic 40.0%
GGTGCATATACAACTTCTTC+TGG + tig0040377:8722-8741 Msa1459610:CDS 40.0%
GGAGCAAAACCCATTGAAAT+TGG - tig0040377:8750-8769 Msa1459610:intergenic 40.0%
AAGGTAAATGTCCTTAGCTG+TGG - tig0040377:8771-8790 Msa1459610:intergenic 40.0%
GATTCTTCGGCTACTAGTGT+AGG - tig0040377:7543-7562 None:intergenic 45.0%
! CAGGTTGGCAATTTGGGATA+GGG - tig0040377:7565-7584 None:intergenic 45.0%
!! TCAGGTTGGCAATTTGGGAT+AGG - tig0040377:7566-7585 None:intergenic 45.0%
! ACCAAAAATGGGCTTCAGGT+TGG - tig0040377:7580-7599 Msa1459610:intergenic 45.0%
! AAGCACCAAAAATGGGCTTC+AGG - tig0040377:7584-7603 Msa1459610:intergenic 45.0%
!!! AAGCCCATTTTTGGTGCTTC+AGG + tig0040377:7585-7604 Msa1459610:CDS 45.0%
! CACTCCTGAAGCACCAAAAA+TGG - tig0040377:7592-7611 Msa1459610:intergenic 45.0%
!! TTTGGTGCTTCAGGAGTGAA+AGG + tig0040377:7594-7613 Msa1459610:CDS 45.0%
! GTAGGCACATTAGCTTCACT+TGG + tig0040377:7819-7838 Msa1459610:CDS 45.0%
AACCACCTTTGACTCTGTTG+GGG + tig0040377:7980-7999 Msa1459610:CDS 45.0%
ATTAAGACGGAGGAAGGTAG+TGG + tig0040377:8053-8072 Msa1459610:CDS 45.0%
!! TCAGCAGCTTTGAGAAGCTT+GGG - tig0040377:8128-8147 Msa1459610:intergenic 45.0%
!! ATCAGCAGCTTTGAGAAGCT+TGG - tig0040377:8129-8148 Msa1459610:intergenic 45.0%
! TCCGTGGTAAGCTTTTGCAT+CGG - tig0040377:8204-8223 Msa1459610:intergenic 45.0%
TAGCTGATAATATGGCTCCG+TGG - tig0040377:8220-8239 Msa1459610:intergenic 45.0%
! TTTGAAACAGCTACACGGCT+TGG + tig0040377:8248-8267 Msa1459610:CDS 45.0%
!! ATTGGTGGTGGATTCACTTC+TGG + tig0040377:8296-8315 Msa1459610:CDS 45.0%
!!! TGAACCTGGCCGTTACTTTT+CGG + tig0040377:8403-8422 Msa1459610:CDS 45.0%
GTTGGTCCAAAAACCGTTGA+TGG - tig0040377:8620-8639 Msa1459610:intergenic 45.0%
CAATCGTTCACCTCAAGTTC+AGG - tig0040377:8683-8702 Msa1459610:intergenic 45.0%
CTGAACTTGAGGTGAACGAT+TGG + tig0040377:8681-8700 Msa1459610:CDS 45.0%
CTTGCATGTTCAAGTCCTGT+CGG + tig0040377:8788-8807 Msa1459610:CDS 45.0%
TTGCATGTTCAAGTCCTGTC+GGG + tig0040377:8789-8808 Msa1459610:CDS 45.0%
GATTCTTCGGCTACTAGTGT+AGG - tig0040377:7543-7562 Msa1459610:intergenic 45.0%
! CAGGTTGGCAATTTGGGATA+GGG - tig0040377:7565-7584 Msa1459610:intergenic 45.0%
!! TCAGGTTGGCAATTTGGGAT+AGG - tig0040377:7566-7585 Msa1459610:intergenic 45.0%
! ACCAAAAATGGGCTTCAGGT+TGG - tig0040377:7580-7599 Msa1459610:intergenic 45.0%
! AAGCACCAAAAATGGGCTTC+AGG - tig0040377:7584-7603 Msa1459610:intergenic 45.0%
!!! AAGCCCATTTTTGGTGCTTC+AGG + tig0040377:7585-7604 Msa1459610:CDS 45.0%
! CACTCCTGAAGCACCAAAAA+TGG - tig0040377:7592-7611 Msa1459610:intergenic 45.0%
!! TTTGGTGCTTCAGGAGTGAA+AGG + tig0040377:7594-7613 Msa1459610:CDS 45.0%
! GTAGGCACATTAGCTTCACT+TGG + tig0040377:7819-7838 Msa1459610:CDS 45.0%
AACCACCTTTGACTCTGTTG+GGG + tig0040377:7980-7999 Msa1459610:CDS 45.0%
ATTAAGACGGAGGAAGGTAG+TGG + tig0040377:8053-8072 Msa1459610:CDS 45.0%
!! TCAGCAGCTTTGAGAAGCTT+GGG - tig0040377:8128-8147 Msa1459610:intergenic 45.0%
!! ATCAGCAGCTTTGAGAAGCT+TGG - tig0040377:8129-8148 Msa1459610:intergenic 45.0%
! TCCGTGGTAAGCTTTTGCAT+CGG - tig0040377:8204-8223 Msa1459610:intergenic 45.0%
TAGCTGATAATATGGCTCCG+TGG - tig0040377:8220-8239 Msa1459610:intergenic 45.0%
! TTTGAAACAGCTACACGGCT+TGG + tig0040377:8248-8267 Msa1459610:CDS 45.0%
!! ATTGGTGGTGGATTCACTTC+TGG + tig0040377:8296-8315 Msa1459610:CDS 45.0%
!!! TGAACCTGGCCGTTACTTTT+CGG + tig0040377:8403-8422 Msa1459610:CDS 45.0%
GTTGGTCCAAAAACCGTTGA+TGG - tig0040377:8620-8639 Msa1459610:intergenic 45.0%
CAATCGTTCACCTCAAGTTC+AGG - tig0040377:8683-8702 Msa1459610:intergenic 45.0%
CTGAACTTGAGGTGAACGAT+TGG + tig0040377:8681-8700 Msa1459610:CDS 45.0%
CTTGCATGTTCAAGTCCTGT+CGG + tig0040377:8788-8807 Msa1459610:CDS 45.0%
TTGCATGTTCAAGTCCTGTC+GGG + tig0040377:8789-8808 Msa1459610:CDS 45.0%
!! GGGCTTCAGGTTGGCAATTT+GGG - tig0040377:7571-7590 None:intergenic 50.0%
!! TGGGCTTCAGGTTGGCAATT+TGG - tig0040377:7572-7591 None:intergenic 50.0%
! GCCAACCTGAAGCCCATTTT+TGG + tig0040377:7576-7595 Msa1459610:CDS 50.0%
! AGATTCAATTTCGGTGCGGC+TGG - tig0040377:7862-7881 Msa1459610:intergenic 50.0%
AACCTCCCCAACAGAGTCAA+AGG - tig0040377:7988-8007 Msa1459610:intergenic 50.0%
GCTCCTCCTCCGTATTAAGA+CGG + tig0040377:8040-8059 Msa1459610:CDS 50.0%
CTTCCTCCGTCTTAATACGG+AGG - tig0040377:8049-8068 Msa1459610:intergenic 50.0%
CTCCGTATTAAGACGGAGGA+AGG + tig0040377:8047-8066 Msa1459610:CDS 50.0%
GCTTCTCAAAGCTGCTGATG+TGG + tig0040377:8130-8149 Msa1459610:CDS 50.0%
TCTCAAAGCTGCTGATGTGG+CGG + tig0040377:8133-8152 Msa1459610:CDS 50.0%
! GTGGCGGGACTTAAAGTAAC+TGG + tig0040377:8149-8168 Msa1459610:CDS 50.0%
ACTGGCGTATCGTTCCACAT+AGG + tig0040377:8167-8186 Msa1459610:CDS 50.0%
GTATCGTTCCACATAGGCAG+TGG + tig0040377:8173-8192 Msa1459610:CDS 50.0%
GCCGATGCAAAAGCTTACCA+CGG + tig0040377:8200-8219 Msa1459610:CDS 50.0%
GTTTCCGAAAAGTAACGGCC+AGG - tig0040377:8410-8429 Msa1459610:intergenic 50.0%
! GGGATGAGCTGAGAGAGTAT+TGG + tig0040377:8471-8490 Msa1459610:CDS 50.0%
TTCTCACATGCACCCCACTT+AGG + tig0040377:8546-8565 Msa1459610:CDS 50.0%
ACATGCACCCCACTTAGGTT+TGG + tig0040377:8551-8570 Msa1459610:CDS 50.0%
GTACCTGCTACCTGAACTTG+AGG + tig0040377:8670-8689 Msa1459610:CDS 50.0%
TCACCTCAAGTTCAGGTAGC+AGG - tig0040377:8676-8695 Msa1459610:intergenic 50.0%
! TGGGTTTTGCTCCACAGCTA+AGG + tig0040377:8757-8776 Msa1459610:CDS 50.0%
CGACAGGACTTGAACATGCA+AGG - tig0040377:8790-8809 Msa1459610:intergenic 50.0%
!! GGGCTTCAGGTTGGCAATTT+GGG - tig0040377:7571-7590 Msa1459610:intergenic 50.0%
!! TGGGCTTCAGGTTGGCAATT+TGG - tig0040377:7572-7591 Msa1459610:intergenic 50.0%
! GCCAACCTGAAGCCCATTTT+TGG + tig0040377:7576-7595 Msa1459610:CDS 50.0%
! AGATTCAATTTCGGTGCGGC+TGG - tig0040377:7862-7881 Msa1459610:intergenic 50.0%
AACCTCCCCAACAGAGTCAA+AGG - tig0040377:7988-8007 Msa1459610:intergenic 50.0%
GCTCCTCCTCCGTATTAAGA+CGG + tig0040377:8040-8059 Msa1459610:CDS 50.0%
CTTCCTCCGTCTTAATACGG+AGG - tig0040377:8049-8068 Msa1459610:intergenic 50.0%
CTCCGTATTAAGACGGAGGA+AGG + tig0040377:8047-8066 Msa1459610:CDS 50.0%
GCTTCTCAAAGCTGCTGATG+TGG + tig0040377:8130-8149 Msa1459610:CDS 50.0%
TCTCAAAGCTGCTGATGTGG+CGG + tig0040377:8133-8152 Msa1459610:CDS 50.0%
! GTGGCGGGACTTAAAGTAAC+TGG + tig0040377:8149-8168 Msa1459610:CDS 50.0%
ACTGGCGTATCGTTCCACAT+AGG + tig0040377:8167-8186 Msa1459610:CDS 50.0%
GTATCGTTCCACATAGGCAG+TGG + tig0040377:8173-8192 Msa1459610:CDS 50.0%
GCCGATGCAAAAGCTTACCA+CGG + tig0040377:8200-8219 Msa1459610:CDS 50.0%
GTTTCCGAAAAGTAACGGCC+AGG - tig0040377:8410-8429 Msa1459610:intergenic 50.0%
! GGGATGAGCTGAGAGAGTAT+TGG + tig0040377:8471-8490 Msa1459610:CDS 50.0%
TTCTCACATGCACCCCACTT+AGG + tig0040377:8546-8565 Msa1459610:CDS 50.0%
ACATGCACCCCACTTAGGTT+TGG + tig0040377:8551-8570 Msa1459610:CDS 50.0%
GTACCTGCTACCTGAACTTG+AGG + tig0040377:8670-8689 Msa1459610:CDS 50.0%
TCACCTCAAGTTCAGGTAGC+AGG - tig0040377:8676-8695 Msa1459610:intergenic 50.0%
! TGGGTTTTGCTCCACAGCTA+AGG + tig0040377:8757-8776 Msa1459610:CDS 50.0%
CGACAGGACTTGAACATGCA+AGG - tig0040377:8790-8809 Msa1459610:intergenic 50.0%
TCTGTCGGGTGAAACGCCAA+GGG - tig0040377:7892-7911 Msa1459610:intergenic 55.0%
TTCTGTCGGGTGAAACGCCA+AGG - tig0040377:7893-7912 Msa1459610:intergenic 55.0%
CTCCCCAACAGAGTCAAAGG+TGG - tig0040377:7985-8004 Msa1459610:intergenic 55.0%
CACCTTTGACTCTGTTGGGG+AGG + tig0040377:7983-8002 Msa1459610:CDS 55.0%
! CGGAGGAGGAGCTCACATTT+TGG - tig0040377:8032-8051 Msa1459610:intergenic 55.0%
CCTCCGTCTTAATACGGAGG+AGG - tig0040377:8046-8065 Msa1459610:intergenic 55.0%
CCTCCTCCGTATTAAGACGG+AGG + tig0040377:8043-8062 Msa1459610:CDS 55.0%
CTCAAAGCTGCTGATGTGGC+GGG + tig0040377:8134-8153 Msa1459610:CDS 55.0%
TCGTTCCACATAGGCAGTGG+AGG + tig0040377:8176-8195 Msa1459610:CDS 55.0%
TCTGTCGGGTGAAACGCCAA+GGG - tig0040377:7892-7911 Msa1459610:intergenic 55.0%
TTCTGTCGGGTGAAACGCCA+AGG - tig0040377:7893-7912 Msa1459610:intergenic 55.0%
CTCCCCAACAGAGTCAAAGG+TGG - tig0040377:7985-8004 Msa1459610:intergenic 55.0%
CACCTTTGACTCTGTTGGGG+AGG + tig0040377:7983-8002 Msa1459610:CDS 55.0%
! CGGAGGAGGAGCTCACATTT+TGG - tig0040377:8032-8051 Msa1459610:intergenic 55.0%
CCTCCGTCTTAATACGGAGG+AGG - tig0040377:8046-8065 Msa1459610:intergenic 55.0%
CCTCCTCCGTATTAAGACGG+AGG + tig0040377:8043-8062 Msa1459610:CDS 55.0%
CTCAAAGCTGCTGATGTGGC+GGG + tig0040377:8134-8153 Msa1459610:CDS 55.0%
TCGTTCCACATAGGCAGTGG+AGG + tig0040377:8176-8195 Msa1459610:CDS 55.0%
GCGGCTGGCGCAGTCGAAAT+TGG - tig0040377:7847-7866 Msa1459610:intergenic 65.0%
CGGCTCCTCCACTGCCTATG+TGG - tig0040377:8184-8203 Msa1459610:intergenic 65.0%
GCGGCTGGCGCAGTCGAAAT+TGG - tig0040377:7847-7866 Msa1459610:intergenic 65.0%
CGGCTCCTCCACTGCCTATG+TGG - tig0040377:8184-8203 Msa1459610:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0040377 gene 7537 8820 7537 ID=Msa1459610;Name=Msa1459610
tig0040377 mRNA 7537 8820 7537 ID=Msa1459610-mRNA-1;Parent=Msa1459610;Name=Msa1459610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|427
tig0040377 exon 7537 8820 7537 ID=Msa1459610-mRNA-1:exon:22315;Parent=Msa1459610-mRNA-1
tig0040377 CDS 7537 8820 7537 ID=Msa1459610-mRNA-1:cds;Parent=Msa1459610-mRNA-1
Gene Sequence

>Msa1459610

ATGCCTACACTAGTAGCCGAAGAATCCCTATCCCAAATTGCCAACCTGAAGCCCATTTTTGGTGCTTCAGGAGTGAAAGGCAAGAAAGTTACAACTTTGTCATCAGAGGTTACTATTTCTGATTTCATTCAATCCGTTATTAAAACCAAACCAGCTGAAAATGACTCACCATTTAGCGTCCTTGATTTAAGGGTTGTAATTGATCTTATGAACAAATGGACCATAAAACTTCCAACTGTTAAGCCTTTTTACGCTGTTAAGTGTAATCCAAACATTTCACTTGTAGGCACATTAGCTTCACTTGGCTCCAATTTCGACTGCGCCAGCCGCACCGAAATTGAATCTGTTTTATCCCTTGGCGTTTCACCCGACAGAATCATCTATGCCAACCCGTGTAAATCAGAGTTACACATTAAATATGCTGCAAGTGTCGGCGTAAACTTAACCACCTTTGACTCTGTTGGGGAGGTTGAAAAGATAAAGAAATGGCATCCAAAATGTGAGCTCCTCCTCCGTATTAAGACGGAGGAAGGTAGTGGAGCGCGTGCATCTTTGAGTGTCAAATATGGCGCGCTTCACAACGAAGTTCCCAAGCTTCTCAAAGCTGCTGATGTGGCGGGACTTAAAGTAACTGGCGTATCGTTCCACATAGGCAGTGGAGGAGCCGATGCAAAAGCTTACCACGGAGCCATATTATCAGCTAAAGAAGTTTTTGAAACAGCTACACGGCTTGGAATGCCAAAAATGAAAATTCTTGATATTGGTGGTGGATTCACTTCTGGCTCCAAATTTGATGAAGCTGCATTGAATGTGAACGATGCAATAAAAACTCATTTCGGAAATGACAAGGATCTTGTTGTTATTGGTGAACCTGGCCGTTACTTTTCGGAAACGACATTTACATTAGCAACAAAAATTATTGGAAAACGTGTGAGGGATGAGCTGAGAGAGTATTGGATCAATGATGGAATTTACGGAACTCTTAATAATATTTTATTTGATTCAGCTATTCTCACATGCACCCCACTTAGGTTTGGTTCAAAACCTGAGAATGTTACATACAAAGATCCTAAAACTTACCCATCAACGGTTTTTGGACCAACTTGTGATGCCATTGATACGGTTCTCAAAGAGTACCTGCTACCTGAACTTGAGGTGAACGATTGGCTTGTGTTTCCAAATATGGGTGCATATACAACTTCTTCTGGAACCAATTTCAATGGGTTTTGCTCCACAGCTAAGGACATTTACCTTGCATGTTCAAGTCCTGTCGGGCAAGAATAA

Protein sequence

>Msa1459610

MPTLVAEESLSQIANLKPIFGASGVKGKKVTTLSSEVTISDFIQSVIKTKPAENDSPFSVLDLRVVIDLMNKWTIKLPTVKPFYAVKCNPNISLVGTLASLGSNFDCASRTEIESVLSLGVSPDRIIYANPCKSELHIKYAASVGVNLTTFDSVGEVEKIKKWHPKCELLLRIKTEEGSGARASLSVKYGALHNEVPKLLKAADVAGLKVTGVSFHIGSGGADAKAYHGAILSAKEVFETATRLGMPKMKILDIGGGFTSGSKFDEAALNVNDAIKTHFGNDKDLVVIGEPGRYFSETTFTLATKIIGKRVRDELREYWINDGIYGTLNNILFDSAILTCTPLRFGSKPENVTYKDPKTYPSTVFGPTCDAIDTVLKEYLLPELEVNDWLVFPNMGAYTTSSGTNFNGFCSTAKDIYLACSSPVGQE*