AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0022900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022900 MtrunA17_Chr6g0467251 82.222 270 16 1 6 243 79 348 8.28e-155 434
Msa0022900 MtrunA17_Chr6g0467121 49.057 265 99 3 8 239 119 380 3.42e-83 253
Msa0022900 MtrunA17_Chr6g0467161 48.996 249 94 2 9 225 91 338 1.24e-77 237
Msa0022900 MtrunA17_Chr2g0292151 38.043 276 124 7 8 238 74 347 5.37e-50 167
Msa0022900 MtrunA17_Chr7g0225221 37.097 248 119 4 8 219 70 316 2.00e-49 164
Msa0022900 MtrunA17_Chr2g0292091 37.795 254 115 5 8 219 69 321 4.94e-49 164
Msa0022900 MtrunA17_Chr2g0291751 37.879 264 121 5 8 229 74 336 1.77e-47 160
Msa0022900 MtrunA17_Chr7g0254231 36.626 243 121 2 8 219 67 307 1.89e-46 156
Msa0022900 MtrunA17_Chr2g0292241 35.581 267 129 5 8 232 74 339 2.04e-46 157
Msa0022900 MtrunA17_Chr1g0188431 38.115 244 115 4 8 219 84 323 4.50e-46 156
Msa0022900 MtrunA17_Chr3g0129051 36.508 252 122 4 8 223 73 322 5.74e-46 155
Msa0022900 MtrunA17_Chr2g0292111 36.364 264 125 5 8 229 74 336 9.24e-46 156
Msa0022900 MtrunA17_Chr7g0244461 36.179 246 121 4 8 219 65 308 1.05e-45 154
Msa0022900 MtrunA17_Chr2g0292101 36.466 266 124 6 8 230 70 333 1.11e-45 155
Msa0022900 MtrunA17_Chr5g0405991 37.052 251 111 7 9 219 69 312 1.14e-45 154
Msa0022900 MtrunA17_Chr8g0371381 38.645 251 107 8 9 219 72 315 1.38e-45 154
Msa0022900 MtrunA17_Chr4g0013191 39.113 248 113 4 8 219 91 336 1.99e-45 155
Msa0022900 MtrunA17_Chr2g0292251 35.507 276 128 8 9 236 74 347 3.46e-45 154
Msa0022900 MtrunA17_Chr2g0292211 36.614 254 118 5 8 219 85 337 4.45e-45 154
Msa0022900 MtrunA17_Chr1g0194151 36.538 260 120 7 8 223 75 333 7.90e-45 153
Msa0022900 MtrunA17_Chr8g0364291 34.109 258 127 4 9 224 69 325 1.44e-44 152
Msa0022900 MtrunA17_Chr3g0114451 36.179 246 121 4 8 219 71 314 1.52e-44 152
Msa0022900 MtrunA17_Chr5g0400331 34.109 258 121 6 9 219 72 327 3.05e-44 151
Msa0022900 MtrunA17_Chr4g0013201 39.431 246 113 5 8 219 91 334 3.82e-44 151
Msa0022900 MtrunA17_Chr5g0404721 34.630 257 126 5 9 224 76 331 4.66e-44 151
Msa0022900 MtrunA17_Chr4g0046131 36.471 255 118 5 9 219 88 342 7.09e-44 150
Msa0022900 MtrunA17_Chr1g0175561 36.965 257 114 7 8 219 69 322 1.15e-43 150
Msa0022900 MtrunA17_Chr2g0292271 35.556 270 131 5 8 235 74 342 1.71e-43 150
Msa0022900 MtrunA17_Chr4g0038151 36.078 255 121 4 8 223 70 321 1.95e-43 149
Msa0022900 MtrunA17_Chr2g0292291 36.863 255 117 5 8 219 75 328 2.09e-43 150
Msa0022900 MtrunA17_Chr1g0181431 32.129 249 129 4 9 219 73 319 4.37e-43 148
Msa0022900 MtrunA17_Chr2g0292261 34.799 273 135 5 8 238 74 345 4.39e-43 149
Msa0022900 MtrunA17_Chr5g0438021 35.317 252 125 5 8 223 76 325 5.07e-43 148
Msa0022900 MtrunA17_Chr4g0038161 36.471 255 120 4 8 223 69 320 1.19e-42 147
Msa0022900 MtrunA17_Chr7g0244451 36.000 250 124 4 8 223 69 316 1.30e-42 147
Msa0022900 MtrunA17_Chr5g0432441 36.000 250 120 5 8 219 75 322 1.44e-42 147
Msa0022900 MtrunA17_Chr1g0197411 34.630 257 124 6 6 219 71 326 1.49e-42 147
Msa0022900 MtrunA17_Chr4g0038171 35.827 254 124 4 8 223 69 321 1.92e-42 146
Msa0022900 MtrunA17_Chr4g0053871 35.341 249 124 4 8 219 72 320 3.05e-42 146
Msa0022900 MtrunA17_Chr4g0075241 33.992 253 123 7 8 219 74 323 5.18e-42 145
Msa0022900 MtrunA17_Chr4g0072091 36.047 258 120 5 8 223 69 323 7.08e-42 145
Msa0022900 MtrunA17_Chr4g0013171 34.921 252 126 6 8 223 72 321 7.13e-42 145
Msa0022900 MtrunA17_Chr6g0477071 34.677 248 118 5 8 219 99 338 1.13e-41 145
Msa0022900 MtrunA17_Chr5g0402581 35.714 252 121 5 8 219 72 322 1.47e-41 144
Msa0022900 MtrunA17_Chr4g0068621 34.263 251 125 5 8 219 83 332 1.80e-41 144
Msa0022900 MtrunA17_Chr4g0043391 35.433 254 125 4 8 223 72 324 2.83e-41 143
Msa0022900 MtrunA17_Chr7g0258811 35.294 255 121 6 8 219 114 367 2.90e-41 144
Msa0022900 MtrunA17_Chr4g0013721 32.443 262 133 6 8 229 145 402 3.34e-41 145
Msa0022900 MtrunA17_Chr2g0296621 34.400 250 117 7 9 219 96 337 3.41e-41 144
Msa0022900 MtrunA17_Chr4g0076211 35.857 251 113 6 9 219 87 329 3.50e-41 143
Msa0022900 MtrunA17_Chr2g0292181 33.083 266 135 5 9 232 84 348 3.80e-41 144
Msa0022900 MtrunA17_Chr3g0128061 34.387 253 124 4 8 219 71 322 5.60e-41 142
Msa0022900 MtrunA17_Chr1g0181481 31.325 249 131 4 9 219 73 319 6.21e-41 142
Msa0022900 MtrunA17_Chr6g0451571 33.858 254 127 4 6 219 78 330 8.01e-41 142
Msa0022900 MtrunA17_Chr3g0136751 34.884 258 121 4 8 223 70 322 8.10e-41 142
Msa0022900 MtrunA17_Chr1g0194271 35.206 267 121 6 8 223 75 340 8.14e-41 142
Msa0022900 MtrunA17_Chr4g0074851 30.980 255 136 4 9 225 78 330 1.47e-40 142
Msa0022900 MtrunA17_Chr5g0402571 35.156 256 125 5 8 223 72 326 1.80e-40 141
Msa0022900 MtrunA17_Chr1g0164891 34.646 254 123 5 9 219 135 388 1.90e-40 143
Msa0022900 MtrunA17_Chr5g0423911 86.667 75 10 0 153 227 1 75 3.30e-40 134
Msa0022900 MtrunA17_Chr4g0013821 32.830 265 132 7 8 231 73 332 4.34e-40 140
Msa0022900 MtrunA17_Chr7g0254201 33.992 253 129 4 8 225 65 314 6.77e-40 139
Msa0022900 MtrunA17_Chr3g0106921 36.694 248 118 5 9 219 71 316 8.07e-40 139
Msa0022900 MtrunA17_Chr3g0129061 35.714 252 124 4 8 223 73 322 9.10e-40 139
Msa0022900 MtrunA17_Chr1g0181511 31.727 249 128 6 10 219 74 319 9.12e-40 139
Msa0022900 MtrunA17_Chr4g0024121 32.016 253 127 7 9 219 73 322 1.23e-39 139
Msa0022900 MtrunA17_Chr7g0268501 32.031 256 129 6 8 223 70 320 1.97e-39 139
Msa0022900 MtrunA17_Chr7g0268521 32.031 256 129 6 8 223 70 320 1.97e-39 139
Msa0022900 MtrunA17_Chr6g0460711 34.263 251 128 4 8 223 66 314 2.54e-39 138
Msa0022900 MtrunA17_Chr2g0279041 34.363 259 122 6 8 223 72 325 3.47e-39 138
Msa0022900 MtrunA17_Chr1g0157051 34.661 251 118 6 9 219 70 314 4.64e-39 137
Msa0022900 MtrunA17_Chr2g0320091 35.628 247 122 6 8 219 70 314 5.00e-39 137
Msa0022900 MtrunA17_Chr2g0320071 34.553 246 125 4 8 219 70 313 6.05e-39 137
Msa0022900 MtrunA17_Chr1g0148021 33.858 254 125 5 8 219 72 324 8.20e-39 137
Msa0022900 MtrunA17_Chr2g0279061 34.363 259 122 6 8 223 13 266 1.22e-38 135
Msa0022900 MtrunA17_Chr8g0372601 32.143 252 129 5 9 219 76 326 2.06e-38 136
Msa0022900 MtrunA17_Chr2g0299691 34.241 257 121 6 8 219 101 354 2.14e-38 137
Msa0022900 MtrunA17_Chr2g0320101 34.553 246 125 4 8 219 70 313 3.13e-38 135
Msa0022900 MtrunA17_Chr5g0401431 33.597 253 126 4 9 219 73 325 3.65e-38 135
Msa0022900 MtrunA17_Chr2g0322861 32.558 258 129 7 9 224 133 387 3.92e-38 137
Msa0022900 MtrunA17_Chr7g0224371 32.245 245 131 3 8 219 76 318 8.14e-38 134
Msa0022900 MtrunA17_Chr2g0329641 33.071 254 123 5 9 219 82 331 3.97e-37 133
Msa0022900 MtrunA17_Chr4g0070951 33.594 256 123 7 8 219 73 325 9.86e-37 132
Msa0022900 MtrunA17_Chr4g0013181 33.865 251 128 6 9 223 105 353 3.70e-36 130
Msa0022900 MtrunA17_Chr5g0421411 32.946 258 125 7 8 219 26 281 6.60e-36 128
Msa0022900 MtrunA17_Chr4g0063671 33.203 256 122 6 8 219 66 316 8.17e-36 129
Msa0022900 MtrunA17_Chr3g0106901 35.366 246 123 4 8 219 76 319 2.00e-35 128
Msa0022900 MtrunA17_Chr2g0320061 33.603 247 127 6 8 219 70 314 4.15e-35 127
Msa0022900 MtrunA17_Chr2g0320051 33.603 247 127 5 8 219 70 314 9.34e-35 126
Msa0022900 MtrunA17_Chr1g0204011 33.200 250 124 6 9 219 73 318 1.97e-34 125
Msa0022900 MtrunA17_Chr1g0155611 32.283 254 129 5 8 219 91 343 7.01e-34 124
Msa0022900 MtrunA17_Chr2g0320031 32.794 247 129 6 8 219 71 315 3.91e-33 122
Msa0022900 MtrunA17_Chr3g0129041 34.524 252 127 4 8 223 73 322 3.94e-33 122
Msa0022900 MtrunA17_Chr1g0213061 33.871 248 126 7 8 219 72 317 1.13e-31 118
Msa0022900 MtrunA17_Chr3g0107881 33.597 253 121 9 9 219 73 320 1.26e-31 118
Msa0022900 MtrunA17_Chr2g0292281 35.610 205 82 5 56 219 17 212 4.11e-31 115
Msa0022900 MtrunA17_Chr2g0311251 30.282 284 124 6 8 219 55 336 5.76e-30 114
Msa0022900 MtrunA17_Chr2g0316191 29.474 285 126 6 8 219 121 403 1.73e-29 114
Msa0022900 MtrunA17_Chr2g0316481 29.225 284 127 6 8 219 121 402 3.25e-29 113
Msa0022900 MtrunA17_Chr5g0432351 32.400 250 129 7 8 219 70 317 5.19e-29 111
Msa0022900 MtrunA17_Chr2g0316791 29.825 285 124 7 8 219 121 402 1.38e-28 111
Msa0022900 MtrunA17_Chr2g0316831 29.225 284 127 6 8 219 157 438 3.40e-28 111
Msa0022900 MtrunA17_Chr5g0432341 31.600 250 131 7 8 219 70 317 2.67e-27 107
Msa0022900 MtrunA17_Chr3g0114461 34.254 181 83 4 74 219 9 188 2.31e-26 101
Msa0022900 MtrunA17_Chr2g0278671 29.457 258 135 5 9 223 70 323 2.97e-26 103
Msa0022900 MtrunA17_Chr5g0432331 30.400 250 134 7 8 219 101 348 1.66e-25 102
Msa0022900 MtrunA17_Chr5g0432401 34.081 223 122 10 8 219 74 282 1.23e-24 99.0
Msa0022900 MtrunA17_Chr5g0413051 29.389 262 135 9 9 223 119 377 3.80e-24 99.4
Msa0022900 MtrunA17_Chr1g0181501 36.719 128 76 2 97 219 58 185 3.22e-23 93.2
Msa0022900 MtrunA17_Chr2g0316141 28.947 266 132 7 9 219 11 274 4.18e-23 94.7
Msa0022900 MtrunA17_Chr2g0316181 28.947 266 132 7 9 219 11 274 4.18e-23 94.7
Msa0022900 MtrunA17_Chr2g0311241 26.462 325 123 7 8 219 105 426 7.15e-23 96.3
Msa0022900 MtrunA17_Chr7g0268491 40.449 89 52 1 131 219 6 93 6.41e-15 68.6
Msa0022900 MtrunA17_Chr2g0316771 26.061 165 85 2 92 219 18 182 6.62e-14 68.2
Msa0022900 MtrunA17_Chr3g0104101 31.387 137 82 4 95 219 9 145 9.89e-12 61.2
Msa0022900 MtrunA17_Chr2g0316811 44.578 83 42 2 8 88 95 175 3.53e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022900 AT1G71695.1 41.697 271 121 3 8 243 89 357 2.37e-67 212
Msa0022900 AT4G08770.1 37.143 280 130 6 8 243 69 346 3.17e-53 175
Msa0022900 AT4G08780.1 36.786 280 131 6 8 243 69 346 4.73e-52 172
Msa0022900 AT5G14130.1 36.863 255 121 3 8 223 77 330 7.18e-50 166
Msa0022900 AT5G14130.2 36.863 255 121 3 8 223 118 371 1.18e-49 167
Msa0022900 AT5G19880.1 36.923 260 112 6 8 219 70 325 3.42e-48 162
Msa0022900 AT3G32980.1 35.145 276 129 6 8 239 76 345 1.40e-47 161
Msa0022900 AT4G37520.1 36.538 260 119 5 8 223 72 329 5.29e-47 159
Msa0022900 AT2G38390.1 37.548 261 119 6 8 225 76 335 1.78e-46 158
Msa0022900 AT1G14550.1 35.484 248 123 4 8 219 71 317 1.09e-45 155
Msa0022900 AT1G14540.1 35.060 251 127 4 8 223 66 315 1.20e-45 155
Msa0022900 AT3G49120.1 34.058 276 132 6 8 239 77 346 1.45e-45 155
Msa0022900 AT3G49110.1 34.420 276 131 6 8 239 78 347 1.73e-45 155
Msa0022900 AT4G37530.1 34.884 258 126 4 8 223 72 329 2.20e-45 154
Msa0022900 AT5G06730.1 33.712 264 132 5 8 229 78 340 5.62e-45 154
Msa0022900 AT4G37520.2 36.154 260 117 6 8 223 72 326 6.64e-45 153
Msa0022900 AT5G06720.1 34.646 254 123 5 8 219 77 329 1.54e-44 152
Msa0022900 AT2G38380.1 36.015 261 123 6 8 225 76 335 1.79e-44 153
Msa0022900 AT1G24110.1 34.749 259 127 5 9 226 68 325 5.15e-44 151
Msa0022900 AT5G58400.1 35.573 253 124 4 8 223 75 325 5.53e-44 151
Msa0022900 AT2G22420.1 34.211 266 129 7 8 232 68 328 7.13e-44 150
Msa0022900 AT3G28200.1 33.333 252 131 3 8 223 66 316 6.51e-43 148
Msa0022900 AT2G24800.1 34.231 260 121 6 8 223 76 329 1.55e-42 147
Msa0022900 AT2G18980.1 36.614 254 115 6 8 219 70 319 2.11e-42 147
Msa0022900 AT4G21960.1 32.661 248 127 4 10 219 78 323 2.35e-42 147
Msa0022900 AT4G33420.1 36.694 248 121 4 8 223 82 325 1.05e-41 145
Msa0022900 AT5G40150.1 32.540 252 134 3 8 223 77 328 2.62e-41 144
Msa0022900 AT5G42180.1 33.865 251 120 6 9 219 69 313 2.77e-41 144
Msa0022900 AT4G33420.2 36.842 247 120 4 9 223 130 372 3.68e-41 145
Msa0022900 AT1G30870.1 35.271 258 119 8 9 225 97 347 4.39e-41 144
Msa0022900 AT3G50990.1 32.806 253 128 6 8 219 86 337 4.47e-41 144
Msa0022900 AT4G30170.1 34.646 254 120 5 8 219 72 321 5.21e-41 143
Msa0022900 AT4G36430.1 32.411 253 129 5 8 219 75 326 7.29e-41 143
Msa0022900 AT5G64120.1 33.071 254 127 4 8 223 80 328 1.66e-40 142
Msa0022900 AT4G16270.1 35.433 254 118 8 8 219 95 344 2.71e-40 142
Msa0022900 AT3G03670.1 32.812 256 130 5 8 223 68 321 3.02e-40 141
Msa0022900 AT2G18140.1 31.395 258 135 5 8 224 80 336 3.10e-40 141
Msa0022900 AT5G17820.1 33.468 248 120 5 9 219 70 309 6.70e-40 140
Msa0022900 AT5G39580.1 34.510 255 123 5 8 223 70 319 7.05e-40 140
Msa0022900 AT5G47000.1 34.646 254 127 4 9 224 79 331 7.54e-40 140
Msa0022900 AT5G58390.1 33.071 254 129 5 8 223 66 316 1.07e-39 139
Msa0022900 AT5G05340.1 33.871 248 126 4 8 219 75 320 1.38e-39 139
Msa0022900 AT2G35380.1 34.615 260 117 7 9 219 76 331 2.78e-39 139
Msa0022900 AT3G17070.2 31.890 254 128 5 9 219 21 272 3.30e-39 137
Msa0022900 AT5G17820.2 33.468 248 120 5 9 219 123 362 3.96e-39 139
Msa0022900 AT2G18150.1 31.008 258 136 5 8 224 81 337 4.57e-39 138
Msa0022900 AT5G15180.1 30.159 252 133 5 8 219 77 325 6.96e-39 137
Msa0022900 AT4G17690.1 34.413 247 126 3 9 219 72 318 7.56e-39 137
Msa0022900 AT3G17070.1 31.765 255 129 5 8 219 83 335 9.68e-39 137
Msa0022900 AT1G49570.1 34.749 259 123 6 8 222 93 349 9.85e-39 138
Msa0022900 AT5G19890.1 34.231 260 122 7 8 224 75 328 1.80e-38 136
Msa0022900 AT3G49960.1 33.721 258 129 5 8 223 72 329 2.03e-38 136
Msa0022900 AT5G66390.1 32.143 252 129 5 9 219 79 329 2.91e-38 136
Msa0022900 AT2G39040.1 34.363 259 120 10 8 219 91 346 4.14e-38 136
Msa0022900 AT3G01190.1 30.709 254 135 5 8 223 71 321 4.24e-38 135
Msa0022900 AT5G67400.1 32.946 258 131 4 8 223 72 329 4.48e-38 135
Msa0022900 AT5G51890.1 33.333 249 122 5 8 216 71 315 6.08e-38 135
Msa0022900 AT2G37130.2 30.522 249 132 6 10 219 46 292 1.84e-37 133
Msa0022900 AT2G37130.1 30.522 249 132 6 10 219 77 323 5.00e-37 133
Msa0022900 AT4G26010.1 33.466 251 126 6 8 224 67 310 5.02e-37 132
Msa0022900 AT4G26010.2 33.466 251 126 6 8 224 95 338 5.53e-37 133
Msa0022900 AT1G05240.1 30.620 258 134 5 8 223 71 325 1.20e-36 132
Msa0022900 AT1G05250.1 30.620 258 134 5 8 223 71 325 1.20e-36 132
Msa0022900 AT4G31760.1 32.692 260 124 6 8 223 74 326 1.67e-36 131
Msa0022900 AT2G41480.1 32.812 256 123 6 8 219 74 324 1.97e-36 131
Msa0022900 AT1G05260.1 29.344 259 138 6 8 224 71 326 7.78e-36 129
Msa0022900 AT4G11290.1 30.196 255 133 7 8 219 70 322 1.02e-35 129
Msa0022900 AT2G34060.1 31.765 255 130 5 9 219 88 342 1.03e-35 130
Msa0022900 AT2G35380.2 34.016 244 108 7 25 219 4 243 1.76e-35 127
Msa0022900 AT3G21770.1 31.128 257 126 8 8 219 74 324 3.58e-35 128
Msa0022900 AT5G24070.1 31.034 261 132 5 6 223 80 335 7.37e-35 127
Msa0022900 AT4G37530.2 35.922 206 90 4 8 171 72 277 1.23e-34 125
Msa0022900 AT1G44970.1 33.465 254 126 5 8 219 90 342 1.85e-34 126
Msa0022900 AT1G34510.1 32.400 250 128 6 9 224 68 310 4.78e-34 124
Msa0022900 AT5G64100.1 31.641 256 129 6 8 223 82 331 5.55e-34 125
Msa0022900 AT1G68850.1 31.660 259 128 7 8 219 75 331 6.12e-34 125
Msa0022900 AT5G64110.1 33.074 257 126 6 8 223 79 330 6.86e-34 124
Msa0022900 AT1G77100.1 30.315 254 136 6 8 223 69 319 1.72e-30 115
Msa0022900 AT4G33870.1 29.371 286 125 7 9 219 114 397 1.08e-29 115
Msa0022900 AT5G22410.1 29.615 260 134 10 8 224 73 326 1.41e-28 110
Msa0022900 AT2G43480.1 28.125 256 132 5 9 219 83 331 1.49e-28 110
Msa0022900 AT4G25980.1 28.846 260 137 6 8 223 71 326 4.23e-28 109
Msa0022900 AT2G24800.2 43.750 80 40 2 8 87 76 150 4.40e-14 70.1
Msa0022900 AT4G25980.2 40.506 79 43 2 9 87 117 191 7.32e-12 64.3
Msa0022900 AT5G39580.2 41.250 80 42 2 8 87 70 144 1.98e-11 62.4

Find 48 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTAGATTTCCTATTATT+TGG 0.128939 1_1:-43215886 None:intergenic
ATCCCTCAACGCCGTTAATT+TGG 0.182797 1_1:+43215627 Msa0022900:CDS
TCGAGTTGTTTCTTGAAATT+TGG 0.220080 1_1:-43215583 None:intergenic
CTATCTGGTGCTCACACTTT+TGG 0.254398 1_1:+43215502 Msa0022900:CDS
CCCAATGGCACGTCAAAATC+TGG 0.255614 1_1:-43215354 None:intergenic
ATGCGTTTACACTGAAGTTT+AGG 0.360294 1_1:-43215389 None:intergenic
TCCAAATAATAGGAAATCTA+AGG 0.367020 1_1:+43215885 Msa0022900:CDS
TTCACAATCTCCTTAGTCTT+AGG 0.369697 1_1:-43215745 None:intergenic
ACCGATGTAGTTGCTCTATC+TGG 0.387253 1_1:+43215487 Msa0022900:intron
TGAAATTTGGTTCGATTGGC+GGG 0.393247 1_1:-43215570 None:intergenic
CTTGAATTTGTACAGTTTGG+AGG 0.394165 1_1:+43215330 Msa0022900:intron
TTCTTGAAATTTGGTTCGAT+TGG 0.399248 1_1:-43215574 None:intergenic
TTGAAATTTGGTTCGATTGG+CGG 0.417306 1_1:-43215571 None:intergenic
TGATGCCAACTTCGCTTTGA+AGG 0.426925 1_1:+43213194 Msa0022900:CDS
ATGATTCGGTTGAACATTGT+AGG 0.430995 1_1:-43215538 None:intergenic
TACATATTATCAAATGTGTT+TGG 0.432816 1_1:-43215661 None:intergenic
ATCCAAATTAACGGCGTTGA+GGG 0.446693 1_1:-43215629 None:intergenic
GGCAAGTCATCCTAAGACTA+AGG 0.457751 1_1:+43215735 Msa0022900:CDS
GCGTTGAGGGATTCCTCATT+CGG 0.481214 1_1:-43215616 None:intergenic
CAACTCGTGGACATTGCTTA+CGG 0.486794 1_1:-43213257 None:intergenic
GGCATCTGTGGTGGAAGAGG+TGG 0.493676 1_1:+43215909 Msa0022900:CDS
ATTTGGTTCGATTGGCGGGT+CGG 0.494109 1_1:-43215566 None:intergenic
CTCCTCCTTCAAAGCGAAGT+TGG 0.495604 1_1:-43213199 None:intergenic
CCAATGGCACGTCAAAATCT+GGG 0.508698 1_1:-43215353 None:intergenic
ATCTGTGGTGGAAGAGGTGG+TGG 0.511426 1_1:+43215912 Msa0022900:CDS
GCGGGTCGGAATCAATGATT+CGG 0.511844 1_1:-43215552 None:intergenic
GGTGGCATCTGTGGTGGAAG+AGG 0.513042 1_1:+43215906 Msa0022900:CDS
CATTAACCTCTTGAATCACC+AGG 0.518011 1_1:+43215687 Msa0022900:CDS
CAACTTCGCTTTGAAGGAGG+AGG 0.526745 1_1:+43213200 Msa0022900:CDS
TGTTCGAAGATCCAAATTAA+CGG 0.529039 1_1:-43215638 None:intergenic
CTTCGCGTGCGGCGATGACA+AGG 0.534915 1_1:-43213296 None:intergenic
GTTTACATCGGATCAAGACT+TGG 0.534996 1_1:+43215714 Msa0022900:CDS
GAAATCTAAGGTGGCATCTG+TGG 0.537357 1_1:+43215897 Msa0022900:CDS
GATCCAAATTAACGGCGTTG+AGG 0.540024 1_1:-43215630 None:intergenic
CGAAGCTACATGTCCGAATG+AGG 0.546652 1_1:+43215603 Msa0022900:CDS
ATCTAAGGTGGCATCTGTGG+TGG 0.560592 1_1:+43215900 Msa0022900:CDS
CTTTCTGGTTAGAAGCAAAG+TGG 0.576026 1_1:-43215768 None:intergenic
TCTGCGCACGAGACAACTCG+TGG 0.586025 1_1:-43213270 None:intergenic
TTGGCGAACAGCTTCGCGTG+CGG 0.588097 1_1:-43213307 None:intergenic
TATAGCACGAAGGTTCTCAA+TGG 0.596636 1_1:-43213232 None:intergenic
TGCCAACTTCGCTTTGAAGG+AGG 0.609424 1_1:+43213197 Msa0022900:CDS
GAATGGTGTTAACGGAGAAG+AGG 0.617553 1_1:+43213158 Msa0022900:CDS
ACATACCCTGGTGATTCAAG+AGG 0.641052 1_1:-43215693 None:intergenic
GATCCGATGTAAACATACCC+TGG 0.644253 1_1:-43215705 None:intergenic
AAATAATAGGAAATCTAAGG+TGG 0.648910 1_1:+43215888 Msa0022900:CDS
TCACCAGGGTATGTTTACAT+CGG 0.661973 1_1:+43215702 Msa0022900:CDS
ATTAACCTCTTGAATCACCA+GGG 0.706268 1_1:+43215688 Msa0022900:CDS
GCTTACGGATTATAGCACGA+AGG 0.709375 1_1:-43213242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTATAAATTTATTTCAA+GGG - chr1_1:43214238-43214257 None:intergenic 10.0%
!! ATTTATAGTATCAAAATATT+TGG + chr1_1:43214247-43214266 Msa0022900:intron 10.0%
!!! GACTTAAAATAATTTTTTTT+TGG - chr1_1:43214490-43214509 None:intergenic 10.0%
!! ACACATAAATATAAATTACT+TGG - chr1_1:43213329-43213348 None:intergenic 15.0%
!!! ATATATATGCCATTTATAAT+TGG + chr1_1:43213399-43213418 Msa0022900:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr1_1:43214050-43214069 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr1_1:43214049-43214068 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr1_1:43213858-43213877 Msa0022900:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr1_1:43214049-43214068 Msa0022900:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr1_1:43214050-43214069 Msa0022900:intron 15.0%
!! TACTATAAATTTATTTCAAG+GGG - chr1_1:43214237-43214256 None:intergenic 15.0%
!! GATACTATAAATTTATTTCA+AGG - chr1_1:43214239-43214258 None:intergenic 15.0%
!!! TGTATTATTTTCACTTTATA+CGG + chr1_1:43214542-43214561 Msa0022900:intron 15.0%
!!! TCAATATATTGTTTTAGTTA+AGG - chr1_1:43214583-43214602 None:intergenic 15.0%
!! TAGTTTCAACCAATTATAAA+TGG - chr1_1:43213411-43213430 None:intergenic 20.0%
!! TTCAGAAATTTAAGAGTTTA+AGG - chr1_1:43213727-43213746 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr1_1:43213893-43213912 Msa0022900:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr1_1:43213987-43214006 Msa0022900:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr1_1:43213988-43214007 Msa0022900:intron 20.0%
!! ACATTAGTCGTTTAAAAAAA+GGG - chr1_1:43214124-43214143 None:intergenic 20.0%
!! AACATTAGTCGTTTAAAAAA+AGG - chr1_1:43214125-43214144 None:intergenic 20.0%
!! ACTATAAATTTATTTCAAGG+GGG - chr1_1:43214236-43214255 None:intergenic 20.0%
!!! AATTTTTTTTTGGTGTAAAC+CGG - chr1_1:43214480-43214499 None:intergenic 20.0%
!! ATAAAATTATTTACACTGAC+AGG + chr1_1:43214516-43214535 Msa0022900:intron 20.0%
!! TAAAATTATTTACACTGACA+GGG + chr1_1:43214517-43214536 Msa0022900:intron 20.0%
!!! ATATGCTTAATTGCATTTTT+AGG - chr1_1:43214607-43214626 None:intergenic 20.0%
!!! AATTTTTTTTGATCCGAAAA+CGG - chr1_1:43215460-43215479 None:intergenic 20.0%
!! TACATATTATCAAATGTGTT+TGG - chr1_1:43215664-43215683 None:intergenic 20.0%
!!! ATTTGTTAAAAAACTCTTTC+TGG - chr1_1:43215786-43215805 None:intergenic 20.0%
!!! TTGATTTTTGGATTGAAACA+TGG + chr1_1:43213114-43213133 Msa0022900:CDS 25.0%
!!! ATTTTGTTGAATGGTGTTAA+CGG + chr1_1:43213150-43213169 Msa0022900:CDS 25.0%
! CTTTGCGATTAAAATAATTG+AGG - chr1_1:43213517-43213536 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+AGG - chr1_1:43213698-43213717 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr1_1:43214021-43214040 Msa0022900:intron 25.0%
!!! GAACATCATTCATACTTTTT+TGG + chr1_1:43214634-43214653 Msa0022900:intron 25.0%
! AAGTGACATAATGTTAAATG+TGG - chr1_1:43214660-43214679 None:intergenic 25.0%
! TGATTGAGAATACAAACAAA+AGG + chr1_1:43214744-43214763 Msa0022900:intron 25.0%
!!! TTTTTAGGGTGTTTATTTTC+GGG - chr1_1:43214790-43214809 None:intergenic 25.0%
!!! GTTTTTAGGGTGTTTATTTT+CGG - chr1_1:43214791-43214810 None:intergenic 25.0%
!!! ATTTGCTAATGCTTTTGTTA+AGG + chr1_1:43215804-43215823 Msa0022900:CDS 25.0%
!!! TTTTGTTAAGGTTAGTCAAT+TGG + chr1_1:43215816-43215835 Msa0022900:CDS 25.0%
! TCCAAATAATAGGAAATCTA+AGG + chr1_1:43215885-43215904 Msa0022900:CDS 25.0%
! ACCTTAGATTTCCTATTATT+TGG - chr1_1:43215889-43215908 None:intergenic 25.0%
! AAATAATAGGAAATCTAAGG+TGG + chr1_1:43215888-43215907 Msa0022900:CDS 25.0%
! GATGCATCTATTTTGTTGAA+TGG + chr1_1:43213141-43213160 Msa0022900:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr1_1:43214081-43214100 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr1_1:43214080-43214099 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr1_1:43213761-43213780 Msa0022900:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr1_1:43214020-43214039 Msa0022900:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr1_1:43214080-43214099 Msa0022900:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr1_1:43214081-43214100 Msa0022900:intron 30.0%
TAACAAACCAGGTGATAAAT+AGG - chr1_1:43214180-43214199 None:intergenic 30.0%
TTGTTTGTATTCTCAATCAC+CGG - chr1_1:43214743-43214762 None:intergenic 30.0%
!!! TTTTAGGGGTGTTTATCTTT+GGG - chr1_1:43214922-43214941 None:intergenic 30.0%
!!! TTTTTAGGGGTGTTTATCTT+TGG - chr1_1:43214923-43214942 None:intergenic 30.0%
!! ATCACTTTTGATTCAAGATC+GGG - chr1_1:43215097-43215116 None:intergenic 30.0%
!! GATCACTTTTGATTCAAGAT+CGG - chr1_1:43215098-43215117 None:intergenic 30.0%
GATCTTGAATCAAAAGTGAT+CGG + chr1_1:43215097-43215116 Msa0022900:intron 30.0%
ACTTTATGACCAAATCAGAA+GGG + chr1_1:43215128-43215147 Msa0022900:intron 30.0%
! TGTCTAACTGCAATTTTGTT+TGG - chr1_1:43215195-43215214 None:intergenic 30.0%
! GTTAATTTTGCTTCAAGATC+GGG - chr1_1:43215224-43215243 None:intergenic 30.0%
! GGTTAATTTTGCTTCAAGAT+CGG - chr1_1:43215225-43215244 None:intergenic 30.0%
GATCTTGAAGCAAAATTAAC+CGG + chr1_1:43215224-43215243 Msa0022900:intron 30.0%
TTCCTTGAATTTGTACAGTT+TGG + chr1_1:43215327-43215346 Msa0022900:intron 30.0%
! GATGAACTATTAACCGTTTT+CGG + chr1_1:43215444-43215463 Msa0022900:intron 30.0%
! TTCTTGAAATTTGGTTCGAT+TGG - chr1_1:43215577-43215596 None:intergenic 30.0%
!! TCGAGTTGTTTCTTGAAATT+TGG - chr1_1:43215586-43215605 None:intergenic 30.0%
TGTTCGAAGATCCAAATTAA+CGG - chr1_1:43215641-43215660 None:intergenic 30.0%
! CATGTTTTGCTCCAAATAAT+AGG + chr1_1:43215875-43215894 Msa0022900:CDS 30.0%
AATTGAGGCATGTAAGATCA+AGG - chr1_1:43213502-43213521 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr1_1:43214065-43214084 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr1_1:43214065-43214084 Msa0022900:intron 35.0%
! ATTTCAAGGGGGTATAAGAA+TGG - chr1_1:43214225-43214244 None:intergenic 35.0%
CAACAGCGTTAAAACTCTTA+GGG + chr1_1:43214385-43214404 Msa0022900:intron 35.0%
!! GTTGGATATCGTTTTTACAG+TGG - chr1_1:43214878-43214897 None:intergenic 35.0%
!! TTTAGGGGTGTTTATCTTTG+GGG - chr1_1:43214921-43214940 None:intergenic 35.0%
!!! ACGGGAGGTTTATTTTTTAG+GGG - chr1_1:43214936-43214955 None:intergenic 35.0%
!!! GACGGGAGGTTTATTTTTTA+GGG - chr1_1:43214937-43214956 None:intergenic 35.0%
! CTTTTTATGGTTTCTTTCGG+TGG - chr1_1:43215040-43215059 None:intergenic 35.0%
! GGGCTTTTTATGGTTTCTTT+CGG - chr1_1:43215043-43215062 None:intergenic 35.0%
!!! TTGAGGTTTTGGGCTTTTTA+TGG - chr1_1:43215053-43215072 None:intergenic 35.0%
!! TCTGATTTGGTCATAAAGTC+TGG - chr1_1:43215127-43215146 None:intergenic 35.0%
GACTTTATGACCAAATCAGA+AGG + chr1_1:43215127-43215146 Msa0022900:intron 35.0%
!! CAATTTTGTTTGGCGTGATT+TGG - chr1_1:43215185-43215204 None:intergenic 35.0%
!!! CTTTTTTGTGTGCTGATTTC+CGG - chr1_1:43215254-43215273 None:intergenic 35.0%
ACAAATGACATGATATGCAG+TGG + chr1_1:43215278-43215297 Msa0022900:intron 35.0%
GCAATTAAGTGACGTAATCT+GGG - chr1_1:43215307-43215326 None:intergenic 35.0%
AGCAATTAAGTGACGTAATC+TGG - chr1_1:43215308-43215327 None:intergenic 35.0%
CTCCAAACTGTACAAATTCA+AGG - chr1_1:43215332-43215351 None:intergenic 35.0%
CTTGAATTTGTACAGTTTGG+AGG + chr1_1:43215330-43215349 Msa0022900:intron 35.0%
ATGCGTTTACACTGAAGTTT+AGG - chr1_1:43215392-43215411 None:intergenic 35.0%
!! ATGATTCGGTTGAACATTGT+AGG - chr1_1:43215541-43215560 None:intergenic 35.0%
! TTGAAATTTGGTTCGATTGG+CGG - chr1_1:43215574-43215593 None:intergenic 35.0%
ATTAACCTCTTGAATCACCA+GGG + chr1_1:43215688-43215707 Msa0022900:CDS 35.0%
! TTCACAATCTCCTTAGTCTT+AGG - chr1_1:43215748-43215767 None:intergenic 35.0%
!!! AGTCAATTGGATGTTTTGAC+TGG + chr1_1:43215829-43215848 Msa0022900:CDS 35.0%
!!! GATGTTTTGACTGGAAATCA+AGG + chr1_1:43215838-43215857 Msa0022900:CDS 35.0%
TATAGCACGAAGGTTCTCAA+TGG - chr1_1:43213235-43213254 None:intergenic 40.0%
CTCTCAACCTATTTATCACC+TGG + chr1_1:43214170-43214189 Msa0022900:intron 40.0%
! GTTTGTTAACTCCCTTGTCT+AGG + chr1_1:43214192-43214211 Msa0022900:intron 40.0%
!!! ATGGTTTTGTGCCTAGACAA+GGG - chr1_1:43214206-43214225 None:intergenic 40.0%
!!! AATGGTTTTGTGCCTAGACA+AGG - chr1_1:43214207-43214226 None:intergenic 40.0%
GCAACAGCGTTAAAACTCTT+AGG + chr1_1:43214384-43214403 Msa0022900:intron 40.0%
!! GGAGAGCTTGTTATCCATTT+AGG + chr1_1:43214406-43214425 Msa0022900:intron 40.0%
!! AAACAAAAGGCGCCGTATAT+AGG + chr1_1:43214757-43214776 Msa0022900:intron 40.0%
!!! TGACGAGTATTTTGATGGTG+TGG - chr1_1:43214825-43214844 None:intergenic 40.0%
! TTCGTGAAGGAGTCTGTTTT+AGG - chr1_1:43214851-43214870 None:intergenic 40.0%
!! GGATATCGTTTTTACAGTGG+TGG - chr1_1:43214875-43214894 None:intergenic 40.0%
!! TTAGGGGTGTTTATCTTTGG+GGG - chr1_1:43214920-43214939 None:intergenic 40.0%
!!! GGACGGGAGGTTTATTTTTT+AGG - chr1_1:43214938-43214957 None:intergenic 40.0%
TTTCGATTGTGGCTCAACTT+TGG - chr1_1:43214967-43214986 None:intergenic 40.0%
AGTTGAATGGTCTTTCGGTT+AGG - chr1_1:43214994-43215013 None:intergenic 40.0%
GTGGAAGTTGAATGGTCTTT+CGG - chr1_1:43214999-43215018 None:intergenic 40.0%
TATGGTTTCTTTCGGTGGAT+CGG - chr1_1:43215035-43215054 None:intergenic 40.0%
!! TGGCTCAAGTTTGAGGTTTT+GGG - chr1_1:43215063-43215082 None:intergenic 40.0%
!! TTGGCTCAAGTTTGAGGTTT+TGG - chr1_1:43215064-43215083 None:intergenic 40.0%
! AGTTCTTTGGCTCAAGTTTG+AGG - chr1_1:43215070-43215089 None:intergenic 40.0%
AATGACATGATATGCAGTGG+TGG + chr1_1:43215281-43215300 Msa0022900:intron 40.0%
AGTTCATCTGTTCGTGCAAA+TGG - chr1_1:43215432-43215451 None:intergenic 40.0%
ACCAGATAGAGCAACTACAT+CGG - chr1_1:43215491-43215510 None:intergenic 40.0%
! TGAAATTTGGTTCGATTGGC+GGG - chr1_1:43215573-43215592 None:intergenic 40.0%
! ATCCAAATTAACGGCGTTGA+GGG - chr1_1:43215632-43215651 None:intergenic 40.0%
CATTAACCTCTTGAATCACC+AGG + chr1_1:43215687-43215706 Msa0022900:CDS 40.0%
TCACCAGGGTATGTTTACAT+CGG + chr1_1:43215702-43215721 Msa0022900:CDS 40.0%
GTTTACATCGGATCAAGACT+TGG + chr1_1:43215714-43215733 Msa0022900:CDS 40.0%
!! CTTTCTGGTTAGAAGCAAAG+TGG - chr1_1:43215771-43215790 None:intergenic 40.0%
! GAATGGTGTTAACGGAGAAG+AGG + chr1_1:43213158-43213177 Msa0022900:CDS 45.0%
TGATGCCAACTTCGCTTTGA+AGG + chr1_1:43213194-43213213 Msa0022900:CDS 45.0%
! GCTTACGGATTATAGCACGA+AGG - chr1_1:43213245-43213264 None:intergenic 45.0%
CAACTCGTGGACATTGCTTA+CGG - chr1_1:43213260-43213279 None:intergenic 45.0%
GACAAGGGAGTTAACAAACC+AGG - chr1_1:43214191-43214210 None:intergenic 45.0%
TTTAACGCTGTTGCATGCCA+AGG - chr1_1:43214378-43214397 None:intergenic 45.0%
! ACTAATCCCTCGAGCATTGT+GGG - chr1_1:43214433-43214452 None:intergenic 45.0%
!! TTTGATGGTGTGGTCCTCAT+GGG - chr1_1:43214815-43214834 None:intergenic 45.0%
!!! TTTTGATGGTGTGGTCCTCA+TGG - chr1_1:43214816-43214835 None:intergenic 45.0%
!! GGTGGTGACGAGTATTTTGA+TGG - chr1_1:43214830-43214849 None:intergenic 45.0%
!! GTGAAGGAGTCTGTTTTAGG+TGG - chr1_1:43214848-43214867 None:intergenic 45.0%
TTACAGTGGTGGTTTCGTGA+AGG - chr1_1:43214864-43214883 None:intergenic 45.0%
!! TCAACTTTGGTGTTCAGGAC+GGG - chr1_1:43214954-43214973 None:intergenic 45.0%
!! CTCAACTTTGGTGTTCAGGA+CGG - chr1_1:43214955-43214974 None:intergenic 45.0%
! GGTTAGGAGCTTTTCGATTG+TGG - chr1_1:43214978-43214997 None:intergenic 45.0%
AAGATCGGGAGTCAGTTCTT+TGG - chr1_1:43215083-43215102 None:intergenic 45.0%
! TTGGTGTTTCTCTGGTGTAC+CGG - chr1_1:43215166-43215185 None:intergenic 45.0%
TTTGCTTCAAGATCGGGAGT+CGG - chr1_1:43215218-43215237 None:intergenic 45.0%
!! TTTGTGTGCTGATTTCCGGT+GGG - chr1_1:43215250-43215269 None:intergenic 45.0%
!!! TTTTGTGTGCTGATTTCCGG+TGG - chr1_1:43215251-43215270 None:intergenic 45.0%
CCAATGGCACGTCAAAATCT+GGG - chr1_1:43215356-43215375 None:intergenic 45.0%
!! CCAGATTTTGACGTGCCATT+GGG + chr1_1:43215354-43215373 Msa0022900:CDS 45.0%
! AGGCTGTCTTTTCTTCCCAA+TGG - chr1_1:43215372-43215391 None:intergenic 45.0%
CTGTTCGTGCAAATGGTACT+GGG - chr1_1:43215425-43215444 None:intergenic 45.0%
TCTGTTCGTGCAAATGGTAC+TGG - chr1_1:43215426-43215445 None:intergenic 45.0%
ACCGATGTAGTTGCTCTATC+TGG + chr1_1:43215487-43215506 Msa0022900:intron 45.0%
! CTATCTGGTGCTCACACTTT+TGG + chr1_1:43215502-43215521 Msa0022900:CDS 45.0%
ATCCCTCAACGCCGTTAATT+TGG + chr1_1:43215627-43215646 Msa0022900:CDS 45.0%
GATCCAAATTAACGGCGTTG+AGG - chr1_1:43215633-43215652 None:intergenic 45.0%
ACATACCCTGGTGATTCAAG+AGG - chr1_1:43215696-43215715 None:intergenic 45.0%
GATCCGATGTAAACATACCC+TGG - chr1_1:43215708-43215727 None:intergenic 45.0%
GGCAAGTCATCCTAAGACTA+AGG + chr1_1:43215735-43215754 Msa0022900:CDS 45.0%
! GAAATCTAAGGTGGCATCTG+TGG + chr1_1:43215897-43215916 Msa0022900:CDS 45.0%
!!! AAATTATAGTTTTTTTTTTA+AGG + chr1_1:43213562-43213581 Msa0022900:intron 5.0%
!!! AATTATAGTTTTTTTTTTAA+GGG + chr1_1:43213563-43213582 Msa0022900:intron 5.0%
!!! ATAAGTAAATTTTTTTTATA+GGG - chr1_1:43213666-43213685 None:intergenic 5.0%
!!! TATAAGTAAATTTTTTTTAT+AGG - chr1_1:43213667-43213686 None:intergenic 5.0%
!! TGCCAACTTCGCTTTGAAGG+AGG + chr1_1:43213197-43213216 Msa0022900:CDS 50.0%
CTCCTCCTTCAAAGCGAAGT+TGG - chr1_1:43213202-43213221 None:intergenic 50.0%
!! CAACTTCGCTTTGAAGGAGG+AGG + chr1_1:43213200-43213219 Msa0022900:CDS 50.0%
! CGAGCATTGTGGGACCTAAA+TGG - chr1_1:43214423-43214442 None:intergenic 50.0%
TTTAGGTCCCACAATGCTCG+AGG + chr1_1:43214423-43214442 Msa0022900:intron 50.0%
TTAGGTCCCACAATGCTCGA+GGG + chr1_1:43214424-43214443 Msa0022900:intron 50.0%
! GACTAATCCCTCGAGCATTG+TGG - chr1_1:43214434-43214453 None:intergenic 50.0%
GATCGTCTTGAGCAGGGATT+AGG - chr1_1:43214715-43214734 None:intergenic 50.0%
GTCTCTGATCGTCTTGAGCA+GGG - chr1_1:43214721-43214740 None:intergenic 50.0%
TGCTCAAGACGATCAGAGAC+CGG + chr1_1:43214721-43214740 Msa0022900:intron 50.0%
!! CAAAAGGCGCCGTATATAGG+CGG + chr1_1:43214760-43214779 Msa0022900:intron 50.0%
TCGGGTGTTCCGCCTATATA+CGG - chr1_1:43214772-43214791 None:intergenic 50.0%
ACACCCTAAAAACGCCCATG+AGG + chr1_1:43214798-43214817 Msa0022900:intron 50.0%
! GGTCCTCATGGGCGTTTTTA+GGG - chr1_1:43214804-43214823 None:intergenic 50.0%
! TGGTCCTCATGGGCGTTTTT+AGG - chr1_1:43214805-43214824 None:intergenic 50.0%
GAGTAGTGACGATGGATGGT+TGG - chr1_1:43214896-43214915 None:intergenic 50.0%
!! GTGGCTCAACTTTGGTGTTC+AGG - chr1_1:43214959-43214978 None:intergenic 50.0%
!! GAGAGGTGGTGGAAGTTGAA+TGG - chr1_1:43215007-43215026 None:intergenic 50.0%
!! GGCGTGATTTGGTGTTTCTC+TGG - chr1_1:43215174-43215193 None:intergenic 50.0%
AGCAAAATTAACCGGCCCAC+CGG + chr1_1:43215232-43215251 Msa0022900:intron 50.0%
!! CCCAGATTTTGACGTGCCAT+TGG + chr1_1:43215353-43215372 Msa0022900:CDS 50.0%
CCCAATGGCACGTCAAAATC+TGG - chr1_1:43215357-43215376 None:intergenic 50.0%
GCGGGTCGGAATCAATGATT+CGG - chr1_1:43215555-43215574 None:intergenic 50.0%
! ATTTGGTTCGATTGGCGGGT+CGG - chr1_1:43215569-43215588 None:intergenic 50.0%
CGAAGCTACATGTCCGAATG+AGG + chr1_1:43215603-43215622 Msa0022900:CDS 50.0%
GCGTTGAGGGATTCCTCATT+CGG - chr1_1:43215619-43215638 None:intergenic 50.0%
! ATCTAAGGTGGCATCTGTGG+TGG + chr1_1:43215900-43215919 Msa0022900:CDS 50.0%
CCAAGGCTGGATTCGAACTC+AGG - chr1_1:43214361-43214380 None:intergenic 55.0%
CCTGAGTTCGAATCCAGCCT+TGG + chr1_1:43214358-43214377 Msa0022900:intron 55.0%
TTAGTCTCTGCAGTTGCGCG+TGG + chr1_1:43214448-43214467 Msa0022900:intron 55.0%
GGTCTCTGATCGTCTTGAGC+AGG - chr1_1:43214722-43214741 None:intergenic 55.0%
GGGTGAGTAGTGACGATGGA+TGG - chr1_1:43214900-43214919 None:intergenic 55.0%
TTGGGGGTGAGTAGTGACGA+TGG - chr1_1:43214904-43214923 None:intergenic 55.0%
!! ACTTTGGTGTTCAGGACGGG+AGG - chr1_1:43214951-43214970 None:intergenic 55.0%
GGTTTCTTTCGGTGGATCGG+AGG - chr1_1:43215032-43215051 None:intergenic 55.0%
!! TGAGGGGTGCCCTTCTGATT+TGG - chr1_1:43215140-43215159 None:intergenic 55.0%
TCTGGTGTACCGGAAGTGAG+GGG - chr1_1:43215156-43215175 None:intergenic 55.0%
CTCTGGTGTACCGGAAGTGA+GGG - chr1_1:43215157-43215176 None:intergenic 55.0%
TCTCTGGTGTACCGGAAGTG+AGG - chr1_1:43215158-43215177 None:intergenic 55.0%
! ATCTGTGGTGGAAGAGGTGG+TGG + chr1_1:43215912-43215931 Msa0022900:CDS 55.0%
TCTGCGCACGAGACAACTCG+TGG - chr1_1:43213273-43213292 None:intergenic 60.0%
TTGGCGAACAGCTTCGCGTG+CGG - chr1_1:43213310-43213329 None:intergenic 60.0%
ACGCTGTTGCATGCCAAGGC+TGG - chr1_1:43214374-43214393 None:intergenic 60.0%
CAGTTGCGCGTGGAGGATAC+CGG + chr1_1:43214458-43214477 Msa0022900:intron 60.0%
!! AGAAGGGCACCCCTCACTTC+CGG + chr1_1:43215144-43215163 Msa0022900:intron 60.0%
!! TGTGCTGATTTCCGGTGGGC+CGG - chr1_1:43215246-43215265 None:intergenic 60.0%
! GGTGGCATCTGTGGTGGAAG+AGG + chr1_1:43215906-43215925 Msa0022900:CDS 60.0%
! GGCATCTGTGGTGGAAGAGG+TGG + chr1_1:43215909-43215928 Msa0022900:CDS 60.0%
CTTCGCGTGCGGCGATGACA+AGG - chr1_1:43213299-43213318 None:intergenic 65.0%
GTCTCTGCAGTTGCGCGTGG+AGG + chr1_1:43214451-43214470 Msa0022900:intron 65.0%
GATCGGAGGTCGAGAGGTGG+TGG - chr1_1:43215018-43215037 None:intergenic 65.0%
GTGGATCGGAGGTCGAGAGG+TGG - chr1_1:43215021-43215040 None:intergenic 65.0%
TCGGTGGATCGGAGGTCGAG+AGG - chr1_1:43215024-43215043 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 43213111 43215954 43213111 ID=Msa0022900;Name=Msa0022900
chr1_1 mRNA 43213111 43215954 43213111 ID=Msa0022900-mRNA-1;Parent=Msa0022900;Name=Msa0022900-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|3|0|243
chr1_1 exon 43213111 43213329 43213111 ID=Msa0022900-mRNA-1:exon:12566;Parent=Msa0022900-mRNA-1
chr1_1 exon 43215345 43215399 43215345 ID=Msa0022900-mRNA-1:exon:12567;Parent=Msa0022900-mRNA-1
chr1_1 exon 43215497 43215954 43215497 ID=Msa0022900-mRNA-1:exon:12568;Parent=Msa0022900-mRNA-1
chr1_1 CDS 43213111 43213329 43213111 ID=Msa0022900-mRNA-1:cds;Parent=Msa0022900-mRNA-1
chr1_1 CDS 43215345 43215399 43215345 ID=Msa0022900-mRNA-1:cds;Parent=Msa0022900-mRNA-1
chr1_1 CDS 43215497 43215954 43215497 ID=Msa0022900-mRNA-1:cds;Parent=Msa0022900-mRNA-1
Gene Sequence

>Msa0022900

ATGTTGATTTTTGGATTGAAACATGGATGCGATGCATCTATTTTGTTGAATGGTGTTAACGGAGAAGAGGACGAAAAACAACATGATGCCAACTTCGCTTTGAAGGAGGAGGCTCTTCAGACCATTGAGAACCTTCGTGCTATAATCCGTAAGCAATGTCCACGAGTTGTCTCGTGCGCAGATATCCTTGTCATCGCCGCACGCGAAGCTGTTCGCCAATTTGGAGGCCCAGATTTTGACGTGCCATTGGGAAGAAAAGACAGCCTAAACTTCATTGCTCTATCTGGTGCTCACACTTTTGGTCAAGCTCATTGTCCTACAATGTTCAACCGAATCATTGATTCCGACCCGCCAATCGAACCAAATTTCAAGAAACAACTCGAAGCTACATGTCCGAATGAGGAATCCCTCAACGCCGTTAATTTGGATCTTCGAACACCAAACACATTTGATAATATGTACTACATTAACCTCTTGAATCACCAGGGTATGTTTACATCGGATCAAGACTTGGCAAGTCATCCTAAGACTAAGGAGATTGTGAACCACTTTGCTTCTAACCAGAAAGAGTTTTTTAACAAATTTGCTAATGCTTTTGTTAAGGTTAGTCAATTGGATGTTTTGACTGGAAATCAAGGAGAAATTCGTAAGTCATGTTTTGCTCCAAATAATAGGAAATCTAAGGTGGCATCTGTGGTGGAAGAGGTGGTGGAAATTGCAGCAAACATGTAG
Protein sequence

>Msa0022900

MLIFGLKHGCDASILLNGVNGEEDEKQHDANFALKEEALQTIENLRAIIRKQCPRVVSCADILVIAAREAVRQFGGPDFDVPLGRKDSLNFIALSGAHTFGQAHCPTMFNRIIDSDPPIEPNFKKQLEATCPNEESLNAVNLDLRTPNTFDNMYYINLLNHQGMFTSDQDLASHPKTKEIVNHFASNQKEFFNKFANAFVKVSQLDVLTGNQGEIRKSCFAPNNRKSKVASVVEEVVEIAANM*