Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475820 | XP_013469776.2 | 98.031 | 457 | 7 | 1 | 1 | 457 | 1 | 455 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475820 | sp|A0A1P8B590|IQD19_ARATH | 44.328 | 476 | 151 | 18 | 1 | 455 | 60 | 442 | 1.21e-105 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475820 | A0A396JXE9 | 98.031 | 457 | 7 | 1 | 1 | 457 | 1 | 455 | 0.0 | 926 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040200 | Msa0475820 | 0.805571 | 1.252064e-49 | -8.615850e-47 |
| Msa0087890 | Msa0475820 | 0.858474 | 8.037898e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475820 | MtrunA17_Chr1g0204901 | 98.031 | 457 | 7 | 1 | 1 | 457 | 1 | 455 | 0.0 | 926 |
| Msa0475820 | MtrunA17_Chr1g0166431 | 64.392 | 469 | 121 | 12 | 1 | 457 | 7 | 441 | 0.0 | 518 |
| Msa0475820 | MtrunA17_Chr8g0340761 | 37.613 | 444 | 191 | 16 | 1 | 402 | 1 | 400 | 6.10e-43 | 156 |
| Msa0475820 | MtrunA17_Chr8g0389781 | 38.710 | 465 | 209 | 18 | 1 | 423 | 1 | 431 | 6.28e-39 | 146 |
| Msa0475820 | MtrunA17_Chr4g0057321 | 32.704 | 477 | 206 | 14 | 1 | 421 | 1 | 418 | 1.63e-37 | 142 |
| Msa0475820 | MtrunA17_Chr6g0472551 | 35.714 | 322 | 125 | 11 | 135 | 388 | 114 | 421 | 1.31e-33 | 131 |
| Msa0475820 | MtrunA17_Chr7g0273951 | 31.620 | 389 | 185 | 13 | 1 | 372 | 1 | 325 | 1.21e-32 | 127 |
| Msa0475820 | MtrunA17_Chr1g0203711 | 36.740 | 411 | 179 | 13 | 36 | 383 | 9 | 401 | 1.61e-31 | 125 |
| Msa0475820 | MtrunA17_Chr2g0330921 | 30.612 | 392 | 192 | 17 | 1 | 373 | 1 | 331 | 4.09e-26 | 108 |
| Msa0475820 | MtrunA17_Chr4g0020671 | 30.541 | 370 | 179 | 17 | 45 | 371 | 22 | 356 | 3.88e-24 | 104 |
| Msa0475820 | MtrunA17_Chr8g0346021 | 50.649 | 154 | 69 | 3 | 55 | 207 | 50 | 197 | 3.97e-24 | 105 |
| Msa0475820 | MtrunA17_Chr7g0273861 | 29.278 | 263 | 150 | 10 | 136 | 371 | 123 | 376 | 2.44e-20 | 92.8 |
| Msa0475820 | MtrunA17_Chr3g0126901 | 61.404 | 114 | 38 | 3 | 76 | 189 | 56 | 163 | 1.60e-18 | 87.8 |
| Msa0475820 | MtrunA17_Chr4g0060381 | 60.000 | 65 | 26 | 0 | 138 | 202 | 100 | 164 | 1.92e-17 | 85.1 |
| Msa0475820 | MtrunA17_Chr1g0172611 | 56.311 | 103 | 41 | 1 | 86 | 184 | 49 | 151 | 2.90e-17 | 83.2 |
| Msa0475820 | MtrunA17_Chr4g0025441 | 71.698 | 53 | 15 | 0 | 137 | 189 | 95 | 147 | 3.67e-17 | 83.6 |
| Msa0475820 | MtrunA17_Chr8g0371131 | 56.923 | 65 | 28 | 0 | 137 | 201 | 70 | 134 | 4.04e-17 | 78.2 |
| Msa0475820 | MtrunA17_Chr1g0200161 | 50.685 | 73 | 36 | 0 | 134 | 206 | 137 | 209 | 1.54e-16 | 81.6 |
| Msa0475820 | MtrunA17_Chr6g0462191 | 54.701 | 117 | 53 | 0 | 87 | 203 | 56 | 172 | 2.72e-16 | 80.9 |
| Msa0475820 | MtrunA17_Chr1g0181581 | 37.500 | 112 | 57 | 2 | 119 | 230 | 103 | 201 | 2.94e-16 | 80.9 |
| Msa0475820 | MtrunA17_Chr3g0135851 | 47.619 | 105 | 53 | 1 | 137 | 241 | 90 | 192 | 4.73e-16 | 80.1 |
| Msa0475820 | MtrunA17_Chr1g0146931 | 67.925 | 53 | 17 | 0 | 137 | 189 | 121 | 173 | 6.08e-16 | 80.1 |
| Msa0475820 | MtrunA17_Chr7g0263731 | 36.538 | 156 | 94 | 3 | 87 | 239 | 58 | 211 | 2.81e-14 | 74.7 |
| Msa0475820 | MtrunA17_Chr2g0283321 | 32.331 | 133 | 74 | 2 | 130 | 262 | 55 | 171 | 1.47e-12 | 68.2 |
| Msa0475820 | MtrunA17_Chr4g0045641 | 41.176 | 68 | 40 | 0 | 137 | 204 | 145 | 212 | 2.94e-12 | 68.6 |
| Msa0475820 | MtrunA17_Chr5g0416161 | 38.144 | 97 | 48 | 1 | 106 | 202 | 99 | 183 | 5.53e-12 | 68.2 |
| Msa0475820 | MtrunA17_Chr1g0156121 | 29.560 | 159 | 98 | 3 | 49 | 198 | 31 | 184 | 1.29e-11 | 67.0 |
| Msa0475820 | MtrunA17_Chr2g0330051 | 46.903 | 113 | 47 | 2 | 137 | 249 | 77 | 176 | 8.71e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475820 | AT4G14750.1 | 44.118 | 476 | 152 | 18 | 1 | 455 | 1 | 383 | 2.89e-107 | 323 |
| Msa0475820 | AT4G14750.2 | 44.328 | 476 | 151 | 18 | 1 | 455 | 60 | 442 | 1.23e-106 | 324 |
| Msa0475820 | AT4G14750.3 | 44.726 | 474 | 150 | 18 | 1 | 453 | 60 | 442 | 1.33e-106 | 324 |
| Msa0475820 | AT3G16490.1 | 36.765 | 408 | 168 | 18 | 1 | 387 | 1 | 339 | 7.71e-33 | 128 |
| Msa0475820 | AT4G23060.1 | 34.177 | 316 | 169 | 10 | 138 | 421 | 167 | 475 | 1.24e-29 | 121 |
| Msa0475820 | AT4G29150.1 | 36.395 | 294 | 135 | 13 | 127 | 401 | 120 | 380 | 1.56e-28 | 116 |
| Msa0475820 | AT4G00820.1 | 41.250 | 160 | 84 | 2 | 53 | 207 | 47 | 201 | 7.12e-26 | 110 |
| Msa0475820 | AT1G51960.1 | 33.333 | 285 | 141 | 10 | 137 | 414 | 99 | 341 | 1.22e-23 | 102 |
| Msa0475820 | AT5G03040.1 | 35.885 | 209 | 105 | 7 | 1 | 206 | 1 | 183 | 1.25e-23 | 103 |
| Msa0475820 | AT5G03040.3 | 35.885 | 209 | 105 | 7 | 1 | 206 | 1 | 183 | 1.25e-23 | 103 |
| Msa0475820 | AT5G03040.2 | 35.885 | 209 | 105 | 7 | 1 | 206 | 1 | 183 | 1.25e-23 | 103 |
| Msa0475820 | AT5G62070.1 | 35.673 | 342 | 182 | 6 | 48 | 371 | 19 | 340 | 3.88e-23 | 101 |
| Msa0475820 | AT1G01110.2 | 67.606 | 71 | 23 | 0 | 137 | 207 | 120 | 190 | 3.40e-22 | 99.8 |
| Msa0475820 | AT3G49260.1 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.04e-20 | 94.7 |
| Msa0475820 | AT3G49260.4 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.04e-20 | 94.7 |
| Msa0475820 | AT3G49260.2 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.04e-20 | 94.7 |
| Msa0475820 | AT3G49260.3 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.10e-20 | 94.7 |
| Msa0475820 | AT1G72670.1 | 31.600 | 250 | 111 | 7 | 1 | 250 | 1 | 190 | 5.91e-20 | 92.0 |
| Msa0475820 | AT3G52290.1 | 54.472 | 123 | 55 | 1 | 89 | 211 | 59 | 180 | 4.86e-19 | 89.4 |
| Msa0475820 | AT2G26180.1 | 42.657 | 143 | 67 | 3 | 108 | 250 | 56 | 183 | 1.35e-18 | 88.2 |
| Msa0475820 | AT5G13460.1 | 29.851 | 268 | 143 | 8 | 137 | 378 | 110 | 358 | 2.38e-18 | 87.4 |
| Msa0475820 | AT5G07240.1 | 49.689 | 161 | 61 | 4 | 48 | 198 | 16 | 166 | 3.62e-18 | 86.7 |
| Msa0475820 | AT5G07240.2 | 49.689 | 161 | 61 | 4 | 48 | 198 | 62 | 212 | 4.94e-18 | 86.7 |
| Msa0475820 | AT1G14380.1 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 5.56e-17 | 84.0 |
| Msa0475820 | AT1G14380.3 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 5.56e-17 | 84.0 |
| Msa0475820 | AT1G14380.4 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 5.56e-17 | 84.0 |
| Msa0475820 | AT1G14380.6 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 7.89e-17 | 83.6 |
| Msa0475820 | AT1G14380.5 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 7.89e-17 | 83.6 |
| Msa0475820 | AT1G14380.2 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 7.89e-17 | 83.6 |
| Msa0475820 | AT3G22190.3 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 8.41e-17 | 82.8 |
| Msa0475820 | AT3G22190.2 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 8.41e-17 | 82.8 |
| Msa0475820 | AT3G22190.4 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 8.41e-17 | 82.8 |
| Msa0475820 | AT3G22190.1 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 8.41e-17 | 82.8 |
| Msa0475820 | AT1G14380.7 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 1.02e-16 | 83.2 |
| Msa0475820 | AT4G10640.1 | 35.417 | 144 | 66 | 4 | 50 | 193 | 39 | 155 | 3.04e-16 | 80.9 |
| Msa0475820 | AT1G18840.1 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 5.15e-16 | 80.9 |
| Msa0475820 | AT1G18840.3 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 5.15e-16 | 80.9 |
| Msa0475820 | AT1G18840.2 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 5.15e-16 | 80.9 |
| Msa0475820 | AT3G51380.1 | 51.163 | 86 | 38 | 2 | 116 | 201 | 19 | 100 | 6.31e-16 | 73.9 |
| Msa0475820 | AT1G17480.1 | 59.016 | 61 | 25 | 0 | 140 | 200 | 96 | 156 | 1.53e-15 | 78.6 |
| Msa0475820 | AT3G59690.2 | 43.243 | 74 | 42 | 0 | 131 | 204 | 162 | 235 | 3.51e-15 | 78.2 |
| Msa0475820 | AT3G59690.1 | 43.243 | 74 | 42 | 0 | 131 | 204 | 162 | 235 | 3.51e-15 | 78.2 |
| Msa0475820 | AT3G49380.1 | 28.470 | 281 | 145 | 8 | 98 | 371 | 66 | 297 | 7.29e-15 | 76.3 |
| Msa0475820 | AT1G74690.1 | 53.846 | 65 | 30 | 0 | 138 | 202 | 113 | 177 | 8.92e-15 | 77.0 |
| Msa0475820 | AT3G09710.1 | 46.667 | 75 | 40 | 0 | 134 | 208 | 104 | 178 | 1.28e-14 | 76.3 |
| Msa0475820 | AT3G09710.2 | 46.667 | 75 | 40 | 0 | 134 | 208 | 104 | 178 | 1.66e-14 | 75.9 |
| Msa0475820 | AT2G43680.1 | 40.541 | 74 | 44 | 0 | 131 | 204 | 316 | 389 | 1.34e-13 | 73.6 |
| Msa0475820 | AT2G43680.4 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.39e-13 | 73.6 |
| Msa0475820 | AT2G43680.2 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.39e-13 | 73.6 |
| Msa0475820 | AT2G43680.3 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.39e-13 | 73.6 |
| Msa0475820 | AT2G43680.5 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.39e-13 | 73.6 |
| Msa0475820 | AT1G19870.2 | 34.127 | 126 | 74 | 3 | 122 | 238 | 15 | 140 | 1.49e-12 | 70.1 |
| Msa0475820 | AT1G19870.1 | 35.135 | 111 | 64 | 2 | 136 | 238 | 213 | 323 | 1.68e-12 | 70.1 |
| Msa0475820 | AT2G26410.2 | 41.379 | 87 | 50 | 1 | 123 | 208 | 132 | 218 | 1.89e-12 | 69.7 |
| Msa0475820 | AT2G26410.1 | 41.379 | 87 | 50 | 1 | 123 | 208 | 132 | 218 | 1.89e-12 | 69.7 |
| Msa0475820 | AT2G02790.1 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 2.40e-12 | 69.7 |
| Msa0475820 | AT2G02790.2 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 2.76e-12 | 69.3 |
| Msa0475820 | AT2G02790.3 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 2.76e-12 | 69.3 |
Find 92 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAATCTGGCCTTTGTTT+TGG | 0.265547 | 3_3:+79298824 | None:intergenic |
| GAAAATAGATATTCCATAAA+TGG | 0.268629 | 3_3:-79299127 | Msa0475820:CDS |
| AAATGGCCACTGTATGCTTT+TGG | 0.293561 | 3_3:+79299040 | None:intergenic |
| ACTGAGTCGGCGAAGAATTT+CGG | 0.307539 | 3_3:-79298792 | Msa0475820:CDS |
| TATTCATTGTTTGTACTGTC+TGG | 0.322482 | 3_3:-79298250 | Msa0475820:three_prime_UTR |
| AAGAGGATTGGTGAAGTTGC+AGG | 0.322775 | 3_3:-79299939 | Msa0475820:CDS |
| GCTTAATTGACCATGGATAT+TGG | 0.331995 | 3_3:+79298693 | None:intergenic |
| TTTGAGGCTGTTGTTGAAAC+AGG | 0.339969 | 3_3:+79300524 | None:intergenic |
| TACTGAAACAATCCTCAAAA+TGG | 0.341390 | 3_3:+79299023 | None:intergenic |
| AAGTTGCTTTCAGTACTATA+TGG | 0.354723 | 3_3:+79300781 | None:intergenic |
| TTCGGAATTATTCAATTCCT+TGG | 0.358169 | 3_3:+79300445 | None:intergenic |
| TGTCATTGAAGAAGTAATTT+CGG | 0.360028 | 3_3:+79300427 | None:intergenic |
| CATTTGAACCAGAAGTTAAC+CGG | 0.370042 | 3_3:+79300282 | None:intergenic |
| GAAGTTGCAGGCACTGATAA+GGG | 0.372077 | 3_3:-79299927 | Msa0475820:CDS |
| CCATGGAAAATGACTTGTTC+AGG | 0.374329 | 3_3:-79299772 | Msa0475820:CDS |
| TTTGATGTAACAGTTAGTTT+AGG | 0.380732 | 3_3:-79300844 | Msa0475820:five_prime_UTR |
| GATTGCAGCCAGAGGGAGAT+AGG | 0.395111 | 3_3:-79298467 | Msa0475820:intron |
| GCTGTGATCCGGTTAACTTC+TGG | 0.398739 | 3_3:-79300290 | Msa0475820:CDS |
| GTTGTTGAAACAGGAGTAGT+TGG | 0.410248 | 3_3:+79300533 | None:intergenic |
| GCATTTCTGTGATTTAGATT+AGG | 0.412617 | 3_3:+79299794 | None:intergenic |
| AGTTGCCTCTCAAATGAATC+TGG | 0.422643 | 3_3:+79298812 | None:intergenic |
| GCTTTCCTTCTGACACCATT+CGG | 0.437655 | 3_3:+79299816 | None:intergenic |
| GACATTTGTTCTGCATAAGA+TGG | 0.440761 | 3_3:+79298923 | None:intergenic |
| CTTTGCATCCTCACTGGCCT+AGG | 0.440875 | 3_3:+79298752 | None:intergenic |
| CTCAATTCTGTTAAGGCTGA+TGG | 0.443966 | 3_3:+79299064 | None:intergenic |
| AAGCTGCAGCTGCTGTGATC+CGG | 0.446246 | 3_3:-79300301 | Msa0475820:CDS |
| TGAAGTTGCAGGCACTGATA+AGG | 0.452871 | 3_3:-79299928 | Msa0475820:CDS |
| AAGGCATTGCGTGCTTTAAG+AGG | 0.452954 | 3_3:-79299956 | Msa0475820:CDS |
| ATCCATGTTGTTAGTTTACT+AGG | 0.454299 | 3_3:-79300689 | Msa0475820:five_prime_UTR |
| TCTGTATTAGCCATGTAACT+TGG | 0.457832 | 3_3:+79298881 | None:intergenic |
| CGGCGAAGAATTTCGGTTGA+AGG | 0.465707 | 3_3:-79298785 | Msa0475820:CDS |
| CATTGCTGTGGCTGCTGCTA+CGG | 0.467309 | 3_3:-79300357 | Msa0475820:CDS |
| CCCTTTGTATCCAAGTTACA+TGG | 0.469065 | 3_3:-79298891 | Msa0475820:CDS |
| ATTGCGTGCTTTAAGAGGAT+TGG | 0.475160 | 3_3:-79299951 | Msa0475820:CDS |
| TGTTCTGCATAAGATGGCCT+AGG | 0.475810 | 3_3:+79298929 | None:intergenic |
| ACTCAGATGTATGCAGGCTT+TGG | 0.478305 | 3_3:-79299873 | Msa0475820:CDS |
| GTCAATTAAGCTTGACAGAT+CGG | 0.485134 | 3_3:-79298681 | Msa0475820:CDS |
| GTTTGTGTGACAGGCAAGAA+AGG | 0.494775 | 3_3:-79299975 | Msa0475820:intron |
| TGCGGCAGCTGATGCAGCAG+TGG | 0.496678 | 3_3:-79300333 | Msa0475820:CDS |
| CCTCAAAAGAGAAGAAGAGA+TGG | 0.505393 | 3_3:-79300508 | Msa0475820:CDS |
| TGGATACAAAGGGTAGTCAT+AGG | 0.508034 | 3_3:+79298901 | None:intergenic |
| GATGATCTTTGCATCCTCAC+TGG | 0.511217 | 3_3:+79298746 | None:intergenic |
| CAACATCAAGATCGTGGAGA+TGG | 0.513083 | 3_3:-79299221 | Msa0475820:CDS |
| ATAGGAAATGGACAGAGGCT+TGG | 0.519830 | 3_3:-79299248 | Msa0475820:intron |
| ATGCGTCTTTCGATCTCACT+TGG | 0.521493 | 3_3:-79300216 | Msa0475820:intron |
| CGTAGCAGCAGCCACAGCAA+TGG | 0.524999 | 3_3:+79300358 | None:intergenic |
| CAAAGATCATCTTCACAAGT+AGG | 0.528514 | 3_3:-79298734 | Msa0475820:CDS |
| TGATATATATCTAATTAACT+TGG | 0.529297 | 3_3:+79298171 | None:intergenic |
| TGGCTAATACAGAATCATCA+AGG | 0.530539 | 3_3:-79298871 | Msa0475820:CDS |
| TTTGTGTGAAGGATTTGTAA+TGG | 0.530862 | 3_3:-79298221 | Msa0475820:three_prime_UTR |
| GGCACTGATAAGGGGTCACT+TGG | 0.533686 | 3_3:-79299918 | Msa0475820:CDS |
| GGCAACACTCAGATGTATGC+AGG | 0.534937 | 3_3:-79299879 | Msa0475820:CDS |
| CCATGTAACTTGGATACAAA+GGG | 0.536026 | 3_3:+79298891 | None:intergenic |
| TTCAATTCCTTGGAAGCTGT+CGG | 0.542435 | 3_3:+79300455 | None:intergenic |
| AGCTACACCGACAGCTTCCA+AGG | 0.545619 | 3_3:-79300462 | Msa0475820:CDS |
| GATATAGCAGAATAACATTG+AGG | 0.548121 | 3_3:+79298986 | None:intergenic |
| TCAGTACTATATGGTTGTGA+TGG | 0.550050 | 3_3:+79300790 | None:intergenic |
| GCCATGTAACTTGGATACAA+AGG | 0.552992 | 3_3:+79298890 | None:intergenic |
| TGTGGCTGCTGCTACGGCTG+CGG | 0.553963 | 3_3:-79300351 | Msa0475820:CDS |
| TCTGTTAAGGCTGATGGAGC+TGG | 0.555014 | 3_3:+79299070 | None:intergenic |
| TTGAAGGAAGAAATGTTCCT+AGG | 0.558090 | 3_3:-79298769 | Msa0475820:CDS |
| GATGGCCTAGGGAAAGCAAA+AGG | 0.561679 | 3_3:+79298941 | None:intergenic |
| TCTAAATCACAGAAATGCCA+TGG | 0.567771 | 3_3:-79299789 | Msa0475820:CDS |
| GGTACTTGAGAGAAAGAGAT+GGG | 0.568012 | 3_3:-79300668 | Msa0475820:exon |
| AAGCTAGAGCTCGTGCTCAA+AGG | 0.569984 | 3_3:-79299841 | Msa0475820:CDS |
| ACTCAGTACCTATCTCCCTC+TGG | 0.571519 | 3_3:+79298459 | None:intergenic |
| CATTTGAGAGGCAACTGAGT+CGG | 0.582840 | 3_3:-79298805 | Msa0475820:CDS |
| GTTCTGCATAAGATGGCCTA+GGG | 0.585806 | 3_3:+79298930 | None:intergenic |
| CTGTCAAGCTTAATTGACCA+TGG | 0.596255 | 3_3:+79298686 | None:intergenic |
| TCACTCAAAGACAGCGAGTG+TGG | 0.602764 | 3_3:-79298653 | Msa0475820:CDS |
| CTCAGAACTACCAATATCCA+TGG | 0.603363 | 3_3:-79298703 | Msa0475820:CDS |
| AGGTACTTGAGAGAAAGAGA+TGG | 0.605693 | 3_3:-79300669 | Msa0475820:exon |
| AGGATCCGAATGGTGTCAGA+AGG | 0.606421 | 3_3:-79299821 | Msa0475820:CDS |
| AAAGGCCAGATTCATTTGAG+AGG | 0.608884 | 3_3:-79298817 | Msa0475820:CDS |
| CTTCTATTTAGTGTTGCACA+AGG | 0.615759 | 3_3:+79298431 | None:intergenic |
| CTTGGTGAGAAAACAAGCAA+AGG | 0.620679 | 3_3:-79299900 | Msa0475820:CDS |
| CACAAAGTGCACCAAAACAA+AGG | 0.621093 | 3_3:-79298835 | Msa0475820:CDS |
| TACTCACATCATATGCAACA+AGG | 0.625138 | 3_3:+79298588 | None:intergenic |
| ATCATCTTCACAAGTAGGTG+CGG | 0.625271 | 3_3:-79298729 | Msa0475820:CDS |
| TCTGGATTACATTTGTGTGA+AGG | 0.626541 | 3_3:-79298232 | Msa0475820:three_prime_UTR |
| ACTCACATCATATGCAACAA+GGG | 0.631010 | 3_3:+79298589 | None:intergenic |
| AAGTTGCAGGCACTGATAAG+GGG | 0.634301 | 3_3:-79299926 | Msa0475820:CDS |
| TTGATATTCAGAATGAGCAA+AGG | 0.635567 | 3_3:-79300388 | Msa0475820:CDS |
| GGCTAATACAGAATCATCAA+GGG | 0.638606 | 3_3:-79298870 | Msa0475820:CDS |
| AATTAAGCTTGACAGATCGG+TGG | 0.641771 | 3_3:-79298678 | Msa0475820:CDS |
| GGAAGACAACATCAAGATCG+TGG | 0.662356 | 3_3:-79299227 | Msa0475820:CDS |
| TCGTGCTCAAAGGATCCGAA+TGG | 0.669902 | 3_3:-79299831 | Msa0475820:CDS |
| TACCTAGTAAACTAACAACA+TGG | 0.670118 | 3_3:+79300687 | None:intergenic |
| TGCGTATAGGAAATGGACAG+AGG | 0.674143 | 3_3:-79299253 | Msa0475820:intron |
| GAAATGTTCCTAGGCCAGTG+AGG | 0.680955 | 3_3:-79298760 | Msa0475820:CDS |
| AAGGAATCATGCCATTGCTG+TGG | 0.703010 | 3_3:-79300369 | Msa0475820:CDS |
| TTGAGTCCAAAAGCATACAG+TGG | 0.712237 | 3_3:-79299046 | Msa0475820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAGATAATTATTAATT+AGG | + | chr3_3:79299300-79299319 | None:intergenic | 10.0% |
| !! | TTCAACAATCAAATTAAAAT+TGG | + | chr3_3:79299325-79299344 | None:intergenic | 15.0% |
| !!! | AATTTGATCATAAATTTTGT+AGG | - | chr3_3:79299424-79299443 | Msa0475820:intron | 15.0% |
| !! | TCAAGAAGAAAAATATATAT+CGG | - | chr3_3:79300494-79300513 | Msa0475820:CDS | 15.0% |
| !! | TGATATATATCTAATTAACT+TGG | + | chr3_3:79300848-79300867 | None:intergenic | 15.0% |
| !! | ATTGATGTCATAAACATAAT+TGG | - | chr3_3:79299354-79299373 | Msa0475820:intron | 20.0% |
| !!! | TAATTTTGCATTAGTTAAAG+TGG | - | chr3_3:79299465-79299484 | Msa0475820:intron | 20.0% |
| !!! | GATACACTAAACAATTTTAT+AGG | + | chr3_3:79299691-79299710 | None:intergenic | 20.0% |
| !! | GAAAATAGATATTCCATAAA+TGG | - | chr3_3:79299889-79299908 | Msa0475820:CDS | 20.0% |
| !!! | ATTTTCTTTGTAACTCTAAA+AGG | + | chr3_3:79300674-79300693 | None:intergenic | 20.0% |
| !! | TTTGATGTAACAGTTAGTTT+AGG | - | chr3_3:79298172-79298191 | Msa0475820:three_prime_UTR | 25.0% |
| !!! | GATTTTATTTGTAGATCTCT+TGG | + | chr3_3:79298275-79298294 | None:intergenic | 25.0% |
| !! | TCATTTTGCAACTTTCTTAT+AGG | - | chr3_3:79298293-79298312 | Msa0475820:three_prime_UTR | 25.0% |
| !!! | ACAAACCAGAATTTTTCAAA+TGG | - | chr3_3:79298450-79298469 | Msa0475820:exon | 25.0% |
| ! | TGTCATTGAAGAAGTAATTT+CGG | + | chr3_3:79298592-79298611 | None:intergenic | 25.0% |
| !!! | CCTTTAAAATTTTAAGGACT+CGG | + | chr3_3:79298841-79298860 | None:intergenic | 25.0% |
| !!! | GTCCTTAAAATTTTAAAGGT+CGG | - | chr3_3:79298842-79298861 | Msa0475820:CDS | 25.0% |
| !! | CACATTTTCAATATAAAGTG+TGG | + | chr3_3:79299521-79299540 | None:intergenic | 25.0% |
| ! | TTCTAGTCATGATTAAAATG+TGG | - | chr3_3:79299735-79299754 | Msa0475820:intron | 25.0% |
| !!! | TTTTTTATGATATAGAGTGC+TGG | - | chr3_3:79300704-79300723 | Msa0475820:five_prime_UTR | 25.0% |
| !!! | TTTTTATGATATAGAGTGCT+GGG | - | chr3_3:79300705-79300724 | Msa0475820:five_prime_UTR | 25.0% |
| ! | AAGTTGCTTTCAGTACTATA+TGG | + | chr3_3:79298238-79298257 | None:intergenic | 30.0% |
| ! | ATCCATGTTGTTAGTTTACT+AGG | - | chr3_3:79298327-79298346 | Msa0475820:three_prime_UTR | 30.0% |
| TACCTAGTAAACTAACAACA+TGG | + | chr3_3:79298332-79298351 | None:intergenic | 30.0% | |
| AGATGGGAAAAAAAGGTAAA+TGG | - | chr3_3:79298364-79298383 | Msa0475820:three_prime_UTR | 30.0% | |
| CTGTTCCATTTGAAAAATTC+TGG | + | chr3_3:79298458-79298477 | None:intergenic | 30.0% | |
| !!! | ATGGAGTTTTAGAAGATCAT+CGG | - | chr3_3:79298527-79298546 | Msa0475820:intron | 30.0% |
| TTCGGAATTATTCAATTCCT+TGG | + | chr3_3:79298574-79298593 | None:intergenic | 30.0% | |
| TTGATATTCAGAATGAGCAA+AGG | - | chr3_3:79298628-79298647 | Msa0475820:CDS | 30.0% | |
| ! | CCGAGTCCTTAAAATTTTAA+AGG | - | chr3_3:79298838-79298857 | Msa0475820:CDS | 30.0% |
| !!! | GACCGACCTTTAAAATTTTA+AGG | + | chr3_3:79298847-79298866 | None:intergenic | 30.0% |
| TCTGACATTGTTCACTTTAA+GGG | + | chr3_3:79298907-79298926 | None:intergenic | 30.0% | |
| ATCTGACATTGTTCACTTTA+AGG | + | chr3_3:79298908-79298927 | None:intergenic | 30.0% | |
| TTAAATCGTGGCGATAAATT+TGG | + | chr3_3:79298946-79298965 | None:intergenic | 30.0% | |
| AAATTTATCGCCACGATTTA+AGG | - | chr3_3:79298945-79298964 | Msa0475820:CDS | 30.0% | |
| AATTTATCGCCACGATTTAA+GGG | - | chr3_3:79298946-79298965 | Msa0475820:CDS | 30.0% | |
| GTCCTTGAAATTGTATAGTA+GGG | + | chr3_3:79298998-79299017 | None:intergenic | 30.0% | |
| AGTCCTTGAAATTGTATAGT+AGG | + | chr3_3:79298999-79299018 | None:intergenic | 30.0% | |
| GCATTTCTGTGATTTAGATT+AGG | + | chr3_3:79299225-79299244 | None:intergenic | 30.0% | |
| TTGTTTAGTGTATCCAAATG+AGG | - | chr3_3:79299697-79299716 | Msa0475820:intron | 30.0% | |
| ! | ACTTCATTTTGTTCCTCATT+TGG | + | chr3_3:79299713-79299732 | None:intergenic | 30.0% |
| ! | ATGGATTTTTGCGAATCAAA+AGG | - | chr3_3:79299814-79299833 | Msa0475820:CDS | 30.0% |
| ! | TTTTGTGTAGGAACCATTTA+TGG | + | chr3_3:79299905-79299924 | None:intergenic | 30.0% |
| ! | GTAGTTTTCTTCTTTTGTGT+AGG | + | chr3_3:79299917-79299936 | None:intergenic | 30.0% |
| ! | TTTTGGACTCAATTCTGTTA+AGG | + | chr3_3:79299962-79299981 | None:intergenic | 30.0% |
| TACTGAAACAATCCTCAAAA+TGG | + | chr3_3:79299996-79300015 | None:intergenic | 30.0% | |
| GATATAGCAGAATAACATTG+AGG | + | chr3_3:79300033-79300052 | None:intergenic | 30.0% | |
| TATTCATTGTTTGTACTGTC+TGG | - | chr3_3:79300766-79300785 | Msa0475820:five_prime_UTR | 30.0% | |
| TTTGTGTGAAGGATTTGTAA+TGG | - | chr3_3:79300795-79300814 | Msa0475820:five_prime_UTR | 30.0% | |
| TCAGTACTATATGGTTGTGA+TGG | + | chr3_3:79298229-79298248 | None:intergenic | 35.0% | |
| GAGAAAGAGATGGGAAAAAA+AGG | - | chr3_3:79298357-79298376 | Msa0475820:three_prime_UTR | 35.0% | |
| !! | TGGCTTAAAAACTTGTTGAC+AGG | - | chr3_3:79298384-79298403 | Msa0475820:three_prime_UTR | 35.0% |
| !! | GGCTTAAAAACTTGTTGACA+GGG | - | chr3_3:79298385-79298404 | Msa0475820:three_prime_UTR | 35.0% |
| CATTTGAACCAGAAGTTAAC+CGG | + | chr3_3:79298737-79298756 | None:intergenic | 35.0% | |
| GCAAATTTGAAGGACTAAAC+TGG | + | chr3_3:79298976-79298995 | None:intergenic | 35.0% | |
| GTATAGTAGGGCAAATTTGA+AGG | + | chr3_3:79298986-79299005 | None:intergenic | 35.0% | |
| TGCCCTACTATACAATTTCA+AGG | - | chr3_3:79298993-79299012 | Msa0475820:CDS | 35.0% | |
| TTTGTGAATGTTTGTGTGAC+AGG | - | chr3_3:79299032-79299051 | Msa0475820:CDS | 35.0% | |
| TCTAAATCACAGAAATGCCA+TGG | - | chr3_3:79299227-79299246 | Msa0475820:CDS | 35.0% | |
| ! | CAATATAAAGTGTGGTGCTA+TGG | + | chr3_3:79299513-79299532 | None:intergenic | 35.0% |
| TGTAAGCATAGTATCATGTC+TGG | - | chr3_3:79299601-79299620 | Msa0475820:intron | 35.0% | |
| ! | TGACCTATGAAGCACTAAAA+CGG | + | chr3_3:79299630-79299649 | None:intergenic | 35.0% |
| !!! | AAATGTGGTTTTGTGCGTAT+AGG | - | chr3_3:79299750-79299769 | Msa0475820:intron | 35.0% |
| GACATTTGTTCTGCATAAGA+TGG | + | chr3_3:79300096-79300115 | None:intergenic | 35.0% | |
| CCATGTAACTTGGATACAAA+GGG | + | chr3_3:79300128-79300147 | None:intergenic | 35.0% | |
| TCTGTATTAGCCATGTAACT+TGG | + | chr3_3:79300138-79300157 | None:intergenic | 35.0% | |
| TGGCTAATACAGAATCATCA+AGG | - | chr3_3:79300145-79300164 | Msa0475820:intron | 35.0% | |
| GGCTAATACAGAATCATCAA+GGG | - | chr3_3:79300146-79300165 | Msa0475820:intron | 35.0% | |
| !! | AATGAATCTGGCCTTTGTTT+TGG | + | chr3_3:79300195-79300214 | None:intergenic | 35.0% |
| TTGAAGGAAGAAATGTTCCT+AGG | - | chr3_3:79300247-79300266 | Msa0475820:CDS | 35.0% | |
| CAAAGATCATCTTCACAAGT+AGG | - | chr3_3:79300282-79300301 | Msa0475820:CDS | 35.0% | |
| GCTTAATTGACCATGGATAT+TGG | + | chr3_3:79300326-79300345 | None:intergenic | 35.0% | |
| GTCAATTAAGCTTGACAGAT+CGG | - | chr3_3:79300335-79300354 | Msa0475820:CDS | 35.0% | |
| ACTCACATCATATGCAACAA+GGG | + | chr3_3:79300430-79300449 | None:intergenic | 35.0% | |
| TACTCACATCATATGCAACA+AGG | + | chr3_3:79300431-79300450 | None:intergenic | 35.0% | |
| CTTCTATTTAGTGTTGCACA+AGG | + | chr3_3:79300588-79300607 | None:intergenic | 35.0% | |
| ! | CTCAATGCTTACGTTTTTGT+TGG | + | chr3_3:79300624-79300643 | None:intergenic | 35.0% |
| ! | CAACAAAAACGTAAGCATTG+AGG | - | chr3_3:79300622-79300641 | Msa0475820:CDS | 35.0% |
| !!! | ACGTAAGCATTGAGGTTTTA+AGG | - | chr3_3:79300630-79300649 | Msa0475820:CDS | 35.0% |
| TCTGGATTACATTTGTGTGA+AGG | - | chr3_3:79300784-79300803 | Msa0475820:five_prime_UTR | 35.0% | |
| AGGTACTTGAGAGAAAGAGA+TGG | - | chr3_3:79298347-79298366 | Msa0475820:three_prime_UTR | 40.0% | |
| GGTACTTGAGAGAAAGAGAT+GGG | - | chr3_3:79298348-79298367 | Msa0475820:three_prime_UTR | 40.0% | |
| GTTGTTGAAACAGGAGTAGT+TGG | + | chr3_3:79298486-79298505 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTGTTGTTGAAAC+AGG | + | chr3_3:79298495-79298514 | None:intergenic | 40.0% |
| ! | CCATCTCTTCTTCTCTTTTG+AGG | + | chr3_3:79298511-79298530 | None:intergenic | 40.0% |
| CCTCAAAAGAGAAGAAGAGA+TGG | - | chr3_3:79298508-79298527 | Msa0475820:intron | 40.0% | |
| TTCAATTCCTTGGAAGCTGT+CGG | + | chr3_3:79298564-79298583 | None:intergenic | 40.0% | |
| !! | ATTGCGTGCTTTAAGAGGAT+TGG | - | chr3_3:79299065-79299084 | Msa0475820:CDS | 40.0% |
| CTTGGTGAGAAAACAAGCAA+AGG | - | chr3_3:79299116-79299135 | Msa0475820:CDS | 40.0% | |
| !! | CCTGAACAAGTCATTTTCCA+TGG | + | chr3_3:79299247-79299266 | None:intergenic | 40.0% |
| !! | CCATGGAAAATGACTTGTTC+AGG | - | chr3_3:79299244-79299263 | Msa0475820:CDS | 40.0% |
| CTATGCTTACACATACACAC+TGG | + | chr3_3:79299592-79299611 | None:intergenic | 40.0% | |
| !! | TGTCCGTTTTAGTGCTTCAT+AGG | - | chr3_3:79299624-79299643 | Msa0475820:intron | 40.0% |
| TTTAGTGCTTCATAGGTCAC+TGG | - | chr3_3:79299631-79299650 | Msa0475820:intron | 40.0% | |
| !! | GGTTTTGTGCGTATAGGAAA+TGG | - | chr3_3:79299756-79299775 | Msa0475820:intron | 40.0% |
| CTCAATTCTGTTAAGGCTGA+TGG | + | chr3_3:79299955-79299974 | None:intergenic | 40.0% | |
| ! | TTGAGTCCAAAAGCATACAG+TGG | - | chr3_3:79299970-79299989 | Msa0475820:intron | 40.0% |
| ! | AAATGGCCACTGTATGCTTT+TGG | + | chr3_3:79299979-79299998 | None:intergenic | 40.0% |
| ! | ATCATCCTTTTGCTTTCCCT+AGG | - | chr3_3:79300070-79300089 | Msa0475820:intron | 40.0% |
| TGGATACAAAGGGTAGTCAT+AGG | + | chr3_3:79300118-79300137 | None:intergenic | 40.0% | |
| CCCTTTGTATCCAAGTTACA+TGG | - | chr3_3:79300125-79300144 | Msa0475820:intron | 40.0% | |
| GCCATGTAACTTGGATACAA+AGG | + | chr3_3:79300129-79300148 | None:intergenic | 40.0% | |
| CACAAAGTGCACCAAAACAA+AGG | - | chr3_3:79300181-79300200 | Msa0475820:intron | 40.0% | |
| AAAGGCCAGATTCATTTGAG+AGG | - | chr3_3:79300199-79300218 | Msa0475820:intron | 40.0% | |
| AGTTGCCTCTCAAATGAATC+TGG | + | chr3_3:79300207-79300226 | None:intergenic | 40.0% | |
| ATCATCTTCACAAGTAGGTG+CGG | - | chr3_3:79300287-79300306 | Msa0475820:CDS | 40.0% | |
| CTCAGAACTACCAATATCCA+TGG | - | chr3_3:79300313-79300332 | Msa0475820:CDS | 40.0% | |
| CTGTCAAGCTTAATTGACCA+TGG | + | chr3_3:79300333-79300352 | None:intergenic | 40.0% | |
| AATTAAGCTTGACAGATCGG+TGG | - | chr3_3:79300338-79300357 | Msa0475820:CDS | 40.0% | |
| !!! | ATTGTTTTGATTGCAGCCAG+AGG | - | chr3_3:79300541-79300560 | Msa0475820:CDS | 40.0% |
| !!! | TTGTTTTGATTGCAGCCAGA+GGG | - | chr3_3:79300542-79300561 | Msa0475820:CDS | 40.0% |
| AAGGAATCATGCCATTGCTG+TGG | - | chr3_3:79298647-79298666 | Msa0475820:CDS | 45.0% | |
| ATGCGTCTTTCGATCTCACT+TGG | - | chr3_3:79298800-79298819 | Msa0475820:CDS | 45.0% | |
| TATCGCCACGATTTAAGGGT+CGG | - | chr3_3:79298950-79298969 | Msa0475820:CDS | 45.0% | |
| GTTTGTGTGACAGGCAAGAA+AGG | - | chr3_3:79299041-79299060 | Msa0475820:CDS | 45.0% | |
| !! | AAGGCATTGCGTGCTTTAAG+AGG | - | chr3_3:79299060-79299079 | Msa0475820:CDS | 45.0% |
| ! | AAGAGGATTGGTGAAGTTGC+AGG | - | chr3_3:79299077-79299096 | Msa0475820:CDS | 45.0% |
| !! | TGAAGTTGCAGGCACTGATA+AGG | - | chr3_3:79299088-79299107 | Msa0475820:CDS | 45.0% |
| !! | GAAGTTGCAGGCACTGATAA+GGG | - | chr3_3:79299089-79299108 | Msa0475820:CDS | 45.0% |
| !! | AAGTTGCAGGCACTGATAAG+GGG | - | chr3_3:79299090-79299109 | Msa0475820:CDS | 45.0% |
| ACTCAGATGTATGCAGGCTT+TGG | - | chr3_3:79299143-79299162 | Msa0475820:CDS | 45.0% | |
| GCTTTCCTTCTGACACCATT+CGG | + | chr3_3:79299203-79299222 | None:intergenic | 45.0% | |
| !! | ACTGTAACTTGCTGGATGCT+CGG | + | chr3_3:79299545-79299564 | None:intergenic | 45.0% |
| ! | TCTGAGACACTGTAACTTGC+TGG | + | chr3_3:79299553-79299572 | None:intergenic | 45.0% |
| TGCGTATAGGAAATGGACAG+AGG | - | chr3_3:79299763-79299782 | Msa0475820:CDS | 45.0% | |
| ATAGGAAATGGACAGAGGCT+TGG | - | chr3_3:79299768-79299787 | Msa0475820:CDS | 45.0% | |
| GGAAGACAACATCAAGATCG+TGG | - | chr3_3:79299789-79299808 | Msa0475820:CDS | 45.0% | |
| CAACATCAAGATCGTGGAGA+TGG | - | chr3_3:79299795-79299814 | Msa0475820:CDS | 45.0% | |
| !! | AGCATACAGTGGCCATTTTG+AGG | - | chr3_3:79299981-79300000 | Msa0475820:intron | 45.0% |
| GTTCTGCATAAGATGGCCTA+GGG | + | chr3_3:79300089-79300108 | None:intergenic | 45.0% | |
| TGTTCTGCATAAGATGGCCT+AGG | + | chr3_3:79300090-79300109 | None:intergenic | 45.0% | |
| CATTTGAGAGGCAACTGAGT+CGG | - | chr3_3:79300211-79300230 | Msa0475820:intron | 45.0% | |
| ACTGAGTCGGCGAAGAATTT+CGG | - | chr3_3:79300224-79300243 | Msa0475820:CDS | 45.0% | |
| GATGATCTTTGCATCCTCAC+TGG | + | chr3_3:79300273-79300292 | None:intergenic | 45.0% | |
| GCTGTGATCCGGTTAACTTC+TGG | - | chr3_3:79298726-79298745 | Msa0475820:CDS | 50.0% | |
| GGCAACACTCAGATGTATGC+AGG | - | chr3_3:79299137-79299156 | Msa0475820:CDS | 50.0% | |
| AAGCTAGAGCTCGTGCTCAA+AGG | - | chr3_3:79299175-79299194 | Msa0475820:CDS | 50.0% | |
| TCGTGCTCAAAGGATCCGAA+TGG | - | chr3_3:79299185-79299204 | Msa0475820:CDS | 50.0% | |
| ! | AGGATCCGAATGGTGTCAGA+AGG | - | chr3_3:79299195-79299214 | Msa0475820:CDS | 50.0% |
| TCTGTTAAGGCTGATGGAGC+TGG | + | chr3_3:79299949-79299968 | None:intergenic | 50.0% | |
| GATGGCCTAGGGAAAGCAAA+AGG | + | chr3_3:79300078-79300097 | None:intergenic | 50.0% | |
| CGGCGAAGAATTTCGGTTGA+AGG | - | chr3_3:79300231-79300250 | Msa0475820:CDS | 50.0% | |
| GAAATGTTCCTAGGCCAGTG+AGG | - | chr3_3:79300256-79300275 | Msa0475820:CDS | 50.0% | |
| TCACTCAAAGACAGCGAGTG+TGG | - | chr3_3:79300363-79300382 | Msa0475820:CDS | 50.0% | |
| ACTCAGTACCTATCTCCCTC+TGG | + | chr3_3:79300560-79300579 | None:intergenic | 50.0% | |
| AGCTACACCGACAGCTTCCA+AGG | - | chr3_3:79298554-79298573 | Msa0475820:intron | 55.0% | |
| CATTGCTGTGGCTGCTGCTA+CGG | - | chr3_3:79298659-79298678 | Msa0475820:CDS | 55.0% | |
| AAGCTGCAGCTGCTGTGATC+CGG | - | chr3_3:79298715-79298734 | Msa0475820:CDS | 55.0% | |
| ACTGGCCGACCCTTAAATCG+TGG | + | chr3_3:79298958-79298977 | None:intergenic | 55.0% | |
| !! | GGCACTGATAAGGGGTCACT+TGG | - | chr3_3:79299098-79299117 | Msa0475820:CDS | 55.0% |
| !! | ACACTGGTGTCGTGTCGTGT+CGG | + | chr3_3:79299576-79299595 | None:intergenic | 55.0% |
| ! | CTTTGCATCCTCACTGGCCT+AGG | + | chr3_3:79300267-79300286 | None:intergenic | 55.0% |
| GATTGCAGCCAGAGGGAGAT+AGG | - | chr3_3:79300549-79300568 | Msa0475820:CDS | 55.0% | |
| CGTAGCAGCAGCCACAGCAA+TGG | + | chr3_3:79298661-79298680 | None:intergenic | 60.0% | |
| TGTGGCTGCTGCTACGGCTG+CGG | - | chr3_3:79298665-79298684 | Msa0475820:CDS | 65.0% | |
| TGCGGCAGCTGATGCAGCAG+TGG | - | chr3_3:79298683-79298702 | Msa0475820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79298164 | 79300874 | 79298164 | ID=Msa0475820;Name=Msa0475820 |
| chr3_3 | mRNA | 79298164 | 79300874 | 79298164 | ID=Msa0475820-mRNA-1;Parent=Msa0475820;Name=Msa0475820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=202|1|1|1|1|1|4|297|457 |
| chr3_3 | exon | 79298164 | 79298481 | 79298164 | ID=Msa0475820-mRNA-1:exon:21546;Parent=Msa0475820-mRNA-1 |
| chr3_3 | exon | 79298595 | 79299266 | 79298595 | ID=Msa0475820-mRNA-1:exon:21545;Parent=Msa0475820-mRNA-1 |
| chr3_3 | exon | 79299760 | 79299984 | 79299760 | ID=Msa0475820-mRNA-1:exon:21544;Parent=Msa0475820-mRNA-1 |
| chr3_3 | exon | 79300217 | 79300874 | 79300217 | ID=Msa0475820-mRNA-1:exon:21543;Parent=Msa0475820-mRNA-1 |
| chr3_3 | five_prime_UTR | 79300673 | 79300874 | 79300673 | ID=Msa0475820-mRNA-1:five_prime_utr;Parent=Msa0475820-mRNA-1 |
| chr3_3 | CDS | 79300217 | 79300672 | 79300217 | ID=Msa0475820-mRNA-1:cds;Parent=Msa0475820-mRNA-1 |
| chr3_3 | CDS | 79299760 | 79299984 | 79299760 | ID=Msa0475820-mRNA-1:cds;Parent=Msa0475820-mRNA-1 |
| chr3_3 | CDS | 79298595 | 79299266 | 79298595 | ID=Msa0475820-mRNA-1:cds;Parent=Msa0475820-mRNA-1 |
| chr3_3 | CDS | 79298461 | 79298481 | 79298461 | ID=Msa0475820-mRNA-1:cds;Parent=Msa0475820-mRNA-1 |
| chr3_3 | three_prime_UTR | 79298164 | 79298460 | 79298164 | ID=Msa0475820-mRNA-1:three_prime_utr;Parent=Msa0475820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
