Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087890 | XP_013469776.2 | 97.812 | 457 | 8 | 1 | 1 | 457 | 1 | 455 | 0.0 | 925 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087890 | sp|A0A1P8B590|IQD19_ARATH | 44.235 | 477 | 150 | 19 | 1 | 455 | 60 | 442 | 6.50e-103 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087890 | A0A396JXE9 | 97.812 | 457 | 8 | 1 | 1 | 457 | 1 | 455 | 0.0 | 925 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040200 | Msa0087890 | 0.878650 | 2.364912e-69 | -8.615850e-47 |
| Msa0087890 | Msa0134560 | 0.843878 | 1.068706e-58 | -8.615850e-47 |
| Msa0087890 | Msa0468700 | 0.820225 | 7.675580e-53 | -8.615850e-47 |
| Msa0087890 | Msa0475820 | 0.858474 | 8.037898e-63 | -8.615850e-47 |
| Msa0087890 | Msa0514580 | 0.819973 | 8.765372e-53 | -8.615850e-47 |
| Msa0087890 | Msa0688380 | 0.800730 | 1.256656e-48 | -8.615850e-47 |
| Msa0087890 | Msa1216090 | 0.820468 | 6.749516e-53 | -8.615850e-47 |
| Msa0087890 | Msa1306570 | 0.831727 | 1.416983e-55 | -8.615850e-47 |
| Msa0087890 | Msa1375350 | 0.826114 | 3.240543e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087890 | MtrunA17_Chr1g0204901 | 97.812 | 457 | 8 | 1 | 1 | 457 | 1 | 455 | 0.0 | 925 |
| Msa0087890 | MtrunA17_Chr1g0166431 | 64.179 | 469 | 122 | 11 | 1 | 457 | 7 | 441 | 0.0 | 521 |
| Msa0087890 | MtrunA17_Chr8g0340761 | 38.902 | 437 | 195 | 17 | 1 | 402 | 1 | 400 | 1.36e-43 | 158 |
| Msa0087890 | MtrunA17_Chr8g0389781 | 38.362 | 464 | 210 | 18 | 1 | 422 | 1 | 430 | 2.56e-39 | 147 |
| Msa0087890 | MtrunA17_Chr4g0057321 | 32.495 | 477 | 207 | 14 | 1 | 421 | 1 | 418 | 2.10e-36 | 139 |
| Msa0087890 | MtrunA17_Chr6g0472551 | 35.238 | 315 | 136 | 10 | 135 | 388 | 114 | 421 | 6.75e-33 | 129 |
| Msa0087890 | MtrunA17_Chr7g0273951 | 30.491 | 387 | 192 | 12 | 1 | 372 | 1 | 325 | 6.61e-32 | 125 |
| Msa0087890 | MtrunA17_Chr1g0203711 | 36.740 | 411 | 179 | 13 | 36 | 383 | 9 | 401 | 2.91e-31 | 124 |
| Msa0087890 | MtrunA17_Chr2g0330921 | 30.612 | 392 | 192 | 18 | 1 | 373 | 1 | 331 | 2.80e-26 | 109 |
| Msa0087890 | MtrunA17_Chr8g0346021 | 51.299 | 154 | 68 | 3 | 55 | 207 | 50 | 197 | 1.39e-24 | 106 |
| Msa0087890 | MtrunA17_Chr4g0020671 | 30.352 | 369 | 181 | 17 | 45 | 371 | 22 | 356 | 3.76e-23 | 101 |
| Msa0087890 | MtrunA17_Chr7g0273861 | 29.278 | 263 | 150 | 9 | 136 | 371 | 123 | 376 | 8.12e-20 | 91.3 |
| Msa0087890 | MtrunA17_Chr3g0126901 | 61.404 | 114 | 38 | 3 | 76 | 189 | 56 | 163 | 1.30e-18 | 87.8 |
| Msa0087890 | MtrunA17_Chr4g0060381 | 60.000 | 65 | 26 | 0 | 138 | 202 | 100 | 164 | 1.99e-17 | 84.7 |
| Msa0087890 | MtrunA17_Chr1g0172611 | 56.311 | 103 | 41 | 1 | 86 | 184 | 49 | 151 | 3.15e-17 | 83.2 |
| Msa0087890 | MtrunA17_Chr4g0025441 | 71.698 | 53 | 15 | 0 | 137 | 189 | 95 | 147 | 3.60e-17 | 83.6 |
| Msa0087890 | MtrunA17_Chr8g0371131 | 56.923 | 65 | 28 | 0 | 137 | 201 | 70 | 134 | 4.12e-17 | 78.2 |
| Msa0087890 | MtrunA17_Chr1g0200161 | 50.685 | 73 | 36 | 0 | 134 | 206 | 137 | 209 | 1.45e-16 | 82.0 |
| Msa0087890 | MtrunA17_Chr6g0462191 | 54.701 | 117 | 53 | 0 | 87 | 203 | 56 | 172 | 2.25e-16 | 80.9 |
| Msa0087890 | MtrunA17_Chr1g0181581 | 37.500 | 112 | 57 | 2 | 119 | 230 | 103 | 201 | 3.25e-16 | 80.9 |
| Msa0087890 | MtrunA17_Chr3g0135851 | 47.619 | 105 | 53 | 1 | 137 | 241 | 90 | 192 | 4.56e-16 | 80.1 |
| Msa0087890 | MtrunA17_Chr1g0146931 | 67.925 | 53 | 17 | 0 | 137 | 189 | 121 | 173 | 5.76e-16 | 80.1 |
| Msa0087890 | MtrunA17_Chr7g0263731 | 36.538 | 156 | 94 | 3 | 87 | 239 | 58 | 211 | 4.72e-14 | 73.9 |
| Msa0087890 | MtrunA17_Chr2g0283321 | 34.783 | 115 | 62 | 1 | 130 | 244 | 55 | 156 | 2.16e-12 | 67.8 |
| Msa0087890 | MtrunA17_Chr4g0045641 | 41.176 | 68 | 40 | 0 | 137 | 204 | 145 | 212 | 2.60e-12 | 68.9 |
| Msa0087890 | MtrunA17_Chr5g0416161 | 30.534 | 131 | 78 | 2 | 72 | 202 | 66 | 183 | 3.44e-12 | 68.6 |
| Msa0087890 | MtrunA17_Chr1g0156121 | 29.560 | 159 | 98 | 3 | 49 | 198 | 31 | 184 | 1.02e-11 | 67.4 |
| Msa0087890 | MtrunA17_Chr2g0330051 | 46.903 | 113 | 47 | 2 | 137 | 249 | 77 | 176 | 9.53e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087890 | AT4G14750.1 | 44.235 | 477 | 150 | 19 | 1 | 455 | 1 | 383 | 1.61e-104 | 316 |
| Msa0087890 | AT4G14750.3 | 44.632 | 475 | 149 | 19 | 1 | 453 | 60 | 442 | 6.34e-104 | 317 |
| Msa0087890 | AT4G14750.2 | 44.235 | 477 | 150 | 19 | 1 | 455 | 60 | 442 | 6.60e-104 | 317 |
| Msa0087890 | AT3G16490.1 | 36.320 | 413 | 163 | 15 | 1 | 387 | 1 | 339 | 4.11e-34 | 132 |
| Msa0087890 | AT4G23060.1 | 33.645 | 321 | 174 | 10 | 138 | 426 | 167 | 480 | 3.06e-29 | 120 |
| Msa0087890 | AT4G29150.1 | 35.714 | 294 | 137 | 12 | 127 | 401 | 120 | 380 | 3.38e-28 | 115 |
| Msa0087890 | AT4G00820.1 | 41.250 | 160 | 84 | 2 | 53 | 207 | 47 | 201 | 3.95e-26 | 111 |
| Msa0087890 | AT5G03040.1 | 36.364 | 209 | 104 | 7 | 1 | 206 | 1 | 183 | 3.14e-24 | 105 |
| Msa0087890 | AT5G03040.3 | 36.364 | 209 | 104 | 7 | 1 | 206 | 1 | 183 | 3.14e-24 | 105 |
| Msa0087890 | AT5G03040.2 | 36.364 | 209 | 104 | 7 | 1 | 206 | 1 | 183 | 3.14e-24 | 105 |
| Msa0087890 | AT1G51960.1 | 33.101 | 287 | 139 | 11 | 137 | 414 | 99 | 341 | 1.76e-23 | 101 |
| Msa0087890 | AT5G62070.1 | 35.673 | 342 | 182 | 6 | 48 | 371 | 19 | 340 | 1.68e-22 | 99.4 |
| Msa0087890 | AT1G01110.2 | 67.606 | 71 | 23 | 0 | 137 | 207 | 120 | 190 | 3.25e-22 | 99.8 |
| Msa0087890 | AT3G49260.1 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 9.62e-21 | 95.1 |
| Msa0087890 | AT3G49260.4 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 9.62e-21 | 95.1 |
| Msa0087890 | AT3G49260.2 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 9.62e-21 | 95.1 |
| Msa0087890 | AT3G49260.3 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.04e-20 | 94.7 |
| Msa0087890 | AT1G72670.1 | 31.727 | 249 | 110 | 6 | 1 | 249 | 1 | 189 | 3.58e-20 | 92.8 |
| Msa0087890 | AT3G52290.1 | 54.783 | 115 | 52 | 0 | 89 | 203 | 59 | 173 | 4.95e-19 | 89.4 |
| Msa0087890 | AT2G26180.1 | 42.958 | 142 | 66 | 3 | 108 | 249 | 56 | 182 | 8.50e-19 | 88.6 |
| Msa0087890 | AT5G13460.1 | 29.851 | 268 | 143 | 8 | 137 | 378 | 110 | 358 | 2.11e-18 | 87.8 |
| Msa0087890 | AT5G07240.1 | 49.689 | 161 | 61 | 4 | 48 | 198 | 16 | 166 | 4.47e-18 | 86.3 |
| Msa0087890 | AT5G07240.2 | 49.689 | 161 | 61 | 4 | 48 | 198 | 62 | 212 | 5.93e-18 | 86.3 |
| Msa0087890 | AT1G14380.1 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 4.70e-17 | 84.3 |
| Msa0087890 | AT1G14380.3 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 4.70e-17 | 84.3 |
| Msa0087890 | AT1G14380.4 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 4.70e-17 | 84.3 |
| Msa0087890 | AT1G14380.6 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 6.49e-17 | 84.0 |
| Msa0087890 | AT1G14380.5 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 6.49e-17 | 84.0 |
| Msa0087890 | AT1G14380.2 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 6.49e-17 | 84.0 |
| Msa0087890 | AT1G14380.7 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 7.32e-17 | 83.6 |
| Msa0087890 | AT3G22190.3 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 7.75e-17 | 82.8 |
| Msa0087890 | AT3G22190.2 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 7.75e-17 | 82.8 |
| Msa0087890 | AT3G22190.4 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 7.75e-17 | 82.8 |
| Msa0087890 | AT3G22190.1 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 7.75e-17 | 82.8 |
| Msa0087890 | AT4G10640.1 | 36.111 | 144 | 65 | 4 | 50 | 193 | 39 | 155 | 9.01e-17 | 82.4 |
| Msa0087890 | AT1G18840.1 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 4.88e-16 | 80.9 |
| Msa0087890 | AT1G18840.3 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 4.88e-16 | 80.9 |
| Msa0087890 | AT1G18840.2 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 4.88e-16 | 80.9 |
| Msa0087890 | AT3G59690.2 | 26.667 | 285 | 158 | 8 | 131 | 373 | 162 | 437 | 5.78e-16 | 80.5 |
| Msa0087890 | AT3G59690.1 | 26.667 | 285 | 158 | 8 | 131 | 373 | 162 | 437 | 5.78e-16 | 80.5 |
| Msa0087890 | AT3G51380.1 | 51.163 | 86 | 38 | 2 | 116 | 201 | 19 | 100 | 5.95e-16 | 73.9 |
| Msa0087890 | AT1G17480.1 | 59.016 | 61 | 25 | 0 | 140 | 200 | 96 | 156 | 1.61e-15 | 78.2 |
| Msa0087890 | AT1G74690.1 | 53.846 | 65 | 30 | 0 | 138 | 202 | 113 | 177 | 7.61e-15 | 77.4 |
| Msa0087890 | AT3G49380.1 | 27.719 | 285 | 142 | 9 | 98 | 371 | 66 | 297 | 8.52e-15 | 75.9 |
| Msa0087890 | AT3G09710.1 | 46.667 | 75 | 40 | 0 | 134 | 208 | 104 | 178 | 1.41e-14 | 75.9 |
| Msa0087890 | AT3G09710.2 | 46.667 | 75 | 40 | 0 | 134 | 208 | 104 | 178 | 1.60e-14 | 75.9 |
| Msa0087890 | AT2G43680.1 | 40.541 | 74 | 44 | 0 | 131 | 204 | 316 | 389 | 1.17e-13 | 73.6 |
| Msa0087890 | AT2G43680.4 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.19e-13 | 73.6 |
| Msa0087890 | AT2G43680.2 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.19e-13 | 73.6 |
| Msa0087890 | AT2G43680.3 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.19e-13 | 73.6 |
| Msa0087890 | AT2G43680.5 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.19e-13 | 73.6 |
| Msa0087890 | AT1G19870.1 | 35.135 | 111 | 64 | 2 | 136 | 238 | 213 | 323 | 1.50e-12 | 70.5 |
| Msa0087890 | AT1G19870.2 | 34.127 | 126 | 74 | 3 | 122 | 238 | 15 | 140 | 1.54e-12 | 70.1 |
| Msa0087890 | AT2G02790.1 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 1.57e-12 | 70.1 |
| Msa0087890 | AT2G26410.2 | 41.379 | 87 | 50 | 1 | 123 | 208 | 132 | 218 | 1.61e-12 | 69.7 |
| Msa0087890 | AT2G26410.1 | 41.379 | 87 | 50 | 1 | 123 | 208 | 132 | 218 | 1.61e-12 | 69.7 |
| Msa0087890 | AT2G02790.2 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 1.70e-12 | 70.1 |
| Msa0087890 | AT2G02790.3 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 1.70e-12 | 70.1 |
Find 92 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAATCTGGCCTTTGTTT+TGG | 0.265547 | 1_2:-68931564 | None:intergenic |
| GAAAATAGATATTCCATAAA+TGG | 0.268629 | 1_2:+68931261 | Msa0087890:CDS |
| AAATGGCCACTGCATGCTTT+TGG | 0.277361 | 1_2:-68931348 | None:intergenic |
| ACTGAGTCGGCGAAGAATTT+CGG | 0.307539 | 1_2:+68931596 | Msa0087890:CDS |
| TATTCATTGTTTGTACTGTC+TGG | 0.322482 | 1_2:+68932138 | Msa0087890:three_prime_UTR |
| AAGAGGATTGGTGAAGTTGC+AGG | 0.322775 | 1_2:+68930456 | Msa0087890:CDS |
| GCTTAATTGACCATGGATAT+TGG | 0.331995 | 1_2:-68931695 | None:intergenic |
| TTTGAGGCTGTTGTTGAAAC+AGG | 0.339969 | 1_2:-68929863 | None:intergenic |
| TACTGAAACAATCCTCAAAA+TGG | 0.341390 | 1_2:-68931365 | None:intergenic |
| TCTGTGATCCGTTTGACATC+TGG | 0.348297 | 1_2:+68930097 | Msa0087890:CDS |
| AAGTTGCTTTCAGTACTATA+TGG | 0.354723 | 1_2:-68929606 | None:intergenic |
| TTCTGAATTATTCAATTCCT+TGG | 0.354803 | 1_2:-68929942 | None:intergenic |
| GAAGTTGCAGGCACTGATAA+GGG | 0.372077 | 1_2:+68930468 | Msa0087890:CDS |
| CCATGGAAAATGACTTGTTC+AGG | 0.374329 | 1_2:+68930623 | Msa0087890:CDS |
| TTTGATGTAACAGTTAGTTT+AGG | 0.380732 | 1_2:+68929543 | Msa0087890:five_prime_UTR |
| TAATTCAGAAATTACTTCTT+CGG | 0.390741 | 1_2:+68929955 | Msa0087890:CDS |
| GATTGCAGCCAGAGGGAGAT+AGG | 0.395111 | 1_2:+68931921 | Msa0087890:intron |
| GTTGTTGAAACAGGAGTAGT+TGG | 0.410248 | 1_2:-68929854 | None:intergenic |
| GCATTTCTGTGATTTAGATT+AGG | 0.412617 | 1_2:-68930601 | None:intergenic |
| GATATAGCAGAATAACTTTG+AGG | 0.415958 | 1_2:-68931402 | None:intergenic |
| AGTTGCCTCTCAAATGAATC+TGG | 0.422643 | 1_2:-68931576 | None:intergenic |
| CGCGGCAGCTGATGCAGCAG+TGG | 0.436149 | 1_2:+68930054 | Msa0087890:CDS |
| GCTTTCCTTCTGACACCATT+CGG | 0.437655 | 1_2:-68930579 | None:intergenic |
| GACATTTGTTCTGCATAAGA+TGG | 0.440761 | 1_2:-68931465 | None:intergenic |
| CTTTGCATCCTCACTGGCCT+AGG | 0.440875 | 1_2:-68931636 | None:intergenic |
| CTCAATTCTGTTAAGGCTGA+TGG | 0.443966 | 1_2:-68931324 | None:intergenic |
| TGAAGTTGCAGGCACTGATA+AGG | 0.452871 | 1_2:+68930467 | Msa0087890:CDS |
| AAGGCATTGCGTGCTTTAAG+AGG | 0.452954 | 1_2:+68930439 | Msa0087890:CDS |
| TCTGTATTAGCCATGTAACT+TGG | 0.457832 | 1_2:-68931507 | None:intergenic |
| CGGCGAAGAATTTCGGTTGA+AGG | 0.465707 | 1_2:+68931603 | Msa0087890:CDS |
| CATTTGAACCAGATGTCAAA+CGG | 0.465962 | 1_2:-68930105 | None:intergenic |
| ATCCATGTTATTAGTTTACT+AGG | 0.467185 | 1_2:+68929698 | Msa0087890:five_prime_UTR |
| CCCTTTGTATCCAAGTTACA+TGG | 0.469065 | 1_2:+68931497 | Msa0087890:CDS |
| ATTGCGTGCTTTAAGAGGAT+TGG | 0.475160 | 1_2:+68930444 | Msa0087890:CDS |
| TGTTCTGCATAAGATGGCCT+AGG | 0.475810 | 1_2:-68931459 | None:intergenic |
| ACTCAGATGTATGCAGGCTT+TGG | 0.478305 | 1_2:+68930522 | Msa0087890:CDS |
| GTCAATTAAGCTTGACAGAT+CGG | 0.481004 | 1_2:+68931707 | Msa0087890:CDS |
| CACTGCTGCATCAGCTGCCG+CGG | 0.494629 | 1_2:-68930053 | None:intergenic |
| GTTTGTGTGACAGGCAAGAA+AGG | 0.494775 | 1_2:+68930420 | Msa0087890:intron |
| AGCTACACCAACTGCTTCCA+AGG | 0.499430 | 1_2:+68929925 | Msa0087890:CDS |
| CCTCAAAAGAGAAGAAGAGA+TGG | 0.505393 | 1_2:+68929879 | Msa0087890:CDS |
| TGGATACAAAGGGTAGTCAT+AGG | 0.508034 | 1_2:-68931487 | None:intergenic |
| GATGATCTTTGCATCCTCAC+TGG | 0.511217 | 1_2:-68931642 | None:intergenic |
| TTCAATTCCTTGGAAGCAGT+TGG | 0.512261 | 1_2:-68929932 | None:intergenic |
| CAACATCAAGATCGTGGAGA+TGG | 0.513083 | 1_2:+68931167 | Msa0087890:CDS |
| ATAGGAAATGGACAGAGGCT+TGG | 0.519420 | 1_2:+68931140 | Msa0087890:intron |
| CAAAGATCATCTTCACAAGT+AGG | 0.528514 | 1_2:+68931654 | Msa0087890:CDS |
| TGATAGATATCTAATTAACT+TGG | 0.529297 | 1_2:-68932215 | None:intergenic |
| TGGCTAATACAGAATCATCA+AGG | 0.530539 | 1_2:+68931517 | Msa0087890:CDS |
| TTTGTGTGAAGGATTTGTAA+TGG | 0.530862 | 1_2:+68932167 | Msa0087890:three_prime_UTR |
| GGCACTGATAAGGGGTCACT+TGG | 0.533686 | 1_2:+68930477 | Msa0087890:CDS |
| GGCAACACTCAGATGTATGC+AGG | 0.534937 | 1_2:+68930516 | Msa0087890:CDS |
| CCATGTAACTTGGATACAAA+GGG | 0.536026 | 1_2:-68931497 | None:intergenic |
| AGAAATTACTTCTTCGGTGA+CGG | 0.537413 | 1_2:+68929961 | Msa0087890:CDS |
| TGTAGCAGCAGCCACAGCAA+TGG | 0.537838 | 1_2:-68930029 | None:intergenic |
| TCAGTACTATATGGTTGTGA+TGG | 0.550050 | 1_2:-68929597 | None:intergenic |
| GCCATGTAACTTGGATACAA+AGG | 0.552992 | 1_2:-68931498 | None:intergenic |
| TCTGTTAAGGCTGATGGAGC+TGG | 0.555014 | 1_2:-68931318 | None:intergenic |
| TTGAAGGAAGAAATGTTCCT+AGG | 0.558090 | 1_2:+68931619 | Msa0087890:CDS |
| GATGGCCTAGGGAAAGCAAA+AGG | 0.561679 | 1_2:-68931447 | None:intergenic |
| ATGTGTATTTCGATCTCACT+TGG | 0.563046 | 1_2:+68930171 | Msa0087890:CDS |
| TCTAAATCACAGAAATGCCA+TGG | 0.567771 | 1_2:+68930606 | Msa0087890:CDS |
| GGTACTTGAGAGAAAGAGAT+GGG | 0.568012 | 1_2:+68929719 | Msa0087890:exon |
| AAGCTAGAGCTCGTGCTCAA+AGG | 0.569984 | 1_2:+68930554 | Msa0087890:CDS |
| TGCTGCTTCTGCTTGTAGAG+TGG | 0.570509 | 1_2:-68931209 | None:intergenic |
| ACTCAGTACCTATCTCCCTC+TGG | 0.571519 | 1_2:-68931929 | None:intergenic |
| CATTTGAGAGGCAACTGAGT+CGG | 0.582840 | 1_2:+68931583 | Msa0087890:CDS |
| GTTCTGCATAAGATGGCCTA+GGG | 0.585806 | 1_2:-68931458 | None:intergenic |
| CTGTCAAGCTTAATTGACCA+TGG | 0.596255 | 1_2:-68931702 | None:intergenic |
| TCACTCAAAGACAGCGAGTG+TGG | 0.602764 | 1_2:+68931735 | Msa0087890:CDS |
| CTCAGAACTACCAATATCCA+TGG | 0.603363 | 1_2:+68931685 | Msa0087890:CDS |
| AGGTACTTGAGAGAAAGAGA+TGG | 0.605693 | 1_2:+68929718 | Msa0087890:exon |
| AGGATCCGAATGGTGTCAGA+AGG | 0.606421 | 1_2:+68930574 | Msa0087890:CDS |
| AAAGGCCAGATTCATTTGAG+AGG | 0.608884 | 1_2:+68931571 | Msa0087890:CDS |
| CTTCTATTTAGTGTTGCACA+AGG | 0.615759 | 1_2:-68931957 | None:intergenic |
| CTTGGTGAGAAAACAAGCAA+AGG | 0.620679 | 1_2:+68930495 | Msa0087890:CDS |
| CACAAAGTGCACCAAAACAA+AGG | 0.621093 | 1_2:+68931553 | Msa0087890:CDS |
| TACTCACATCATATGCAACA+AGG | 0.625138 | 1_2:-68931800 | None:intergenic |
| TCTGGATTACATTTGTGTGA+AGG | 0.626541 | 1_2:+68932156 | Msa0087890:three_prime_UTR |
| ACTCACATCATATGCAACAA+GGG | 0.631010 | 1_2:-68931799 | None:intergenic |
| TGTGGCTGCTGCTACAGCCG+CGG | 0.631267 | 1_2:+68930036 | Msa0087890:CDS |
| AAGTTGCAGGCACTGATAAG+GGG | 0.634301 | 1_2:+68930469 | Msa0087890:CDS |
| TACCTAGTAAACTAATAACA+TGG | 0.635274 | 1_2:-68929700 | None:intergenic |
| TTGATATTCAGAATGAGCAA+AGG | 0.635567 | 1_2:+68929999 | Msa0087890:CDS |
| GGCTAATACAGAATCATCAA+GGG | 0.638606 | 1_2:+68931518 | Msa0087890:CDS |
| TGCATATAGGAAATGGACAG+AGG | 0.657251 | 1_2:+68931135 | Msa0087890:intron |
| GGAAGACAACATCAAGATCG+TGG | 0.662356 | 1_2:+68931161 | Msa0087890:CDS |
| TTGAGTCCAAAAGCATGCAG+TGG | 0.666220 | 1_2:+68931342 | Msa0087890:CDS |
| TCGTGCTCAAAGGATCCGAA+TGG | 0.669902 | 1_2:+68930564 | Msa0087890:CDS |
| GAAATGTTCCTAGGCCAGTG+AGG | 0.680955 | 1_2:+68931628 | Msa0087890:CDS |
| AATTAAGCTTGACAGATCGG+CGG | 0.696688 | 1_2:+68931710 | Msa0087890:CDS |
| AAGGAATCATGCCATTGCTG+TGG | 0.703010 | 1_2:+68930018 | Msa0087890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAGATAATTATTAATT+AGG | - | chr1_2:68930679-68930698 | None:intergenic | 10.0% |
| !! | TTCAACAATCAAATTAAAAT+TGG | - | chr1_2:68930704-68930723 | None:intergenic | 15.0% |
| !!! | AATTTGATCATAAATTTTGT+AGG | + | chr1_2:68930803-68930822 | Msa0087890:intron | 15.0% |
| !! | TCAAGAAGAAAAATATATAT+CGG | + | chr1_2:68931866-68931885 | Msa0087890:intron | 15.0% |
| !! | TAATTCAGAAATTACTTCTT+CGG | + | chr1_2:68929955-68929974 | Msa0087890:CDS | 20.0% |
| !! | ATTGATGTCATAAACATAAT+TGG | + | chr1_2:68930733-68930752 | Msa0087890:intron | 20.0% |
| !!! | TAATTTTGCATTAGTTAAAG+TGG | + | chr1_2:68930844-68930863 | Msa0087890:intron | 20.0% |
| !!! | GATACACTAAACAATTTTAT+AGG | - | chr1_2:68931063-68931082 | None:intergenic | 20.0% |
| !! | GAAAATAGATATTCCATAAA+TGG | + | chr1_2:68931261-68931280 | Msa0087890:CDS | 20.0% |
| !!! | AACAGAACTTATATTTTCTT+TGG | - | chr1_2:68932058-68932077 | None:intergenic | 20.0% |
| !! | TGATAGATATCTAATTAACT+TGG | - | chr1_2:68932218-68932237 | None:intergenic | 20.0% |
| !! | TTTGATGTAACAGTTAGTTT+AGG | + | chr1_2:68929543-68929562 | Msa0087890:five_prime_UTR | 25.0% |
| !!! | GATTTTATTTGTAGATCTCT+TGG | - | chr1_2:68929646-68929665 | None:intergenic | 25.0% |
| !! | TCATTTTGCAACTTTCTTAT+AGG | + | chr1_2:68929664-68929683 | Msa0087890:five_prime_UTR | 25.0% |
| !! | ATCCATGTTATTAGTTTACT+AGG | + | chr1_2:68929698-68929717 | Msa0087890:five_prime_UTR | 25.0% |
| ! | TACCTAGTAAACTAATAACA+TGG | - | chr1_2:68929703-68929722 | None:intergenic | 25.0% |
| !!! | ACAAACCAGAATTTTTCAAA+TGG | + | chr1_2:68929821-68929840 | Msa0087890:CDS | 25.0% |
| ! | TTCTGAATTATTCAATTCCT+TGG | - | chr1_2:68929945-68929964 | None:intergenic | 25.0% |
| !! | CACATTTTGAATATAAAGTG+TGG | - | chr1_2:68930892-68930911 | None:intergenic | 25.0% |
| ! | TTCTAGTCATGATTAAAATG+TGG | + | chr1_2:68931107-68931126 | Msa0087890:intron | 25.0% |
| !!! | ATTTTCTTTGGAACTCTAAA+AGG | - | chr1_2:68932046-68932065 | None:intergenic | 25.0% |
| !!! | TTTTTTATGATATAGAGTGC+TGG | + | chr1_2:68932076-68932095 | Msa0087890:three_prime_UTR | 25.0% |
| !!! | TTTTTATGATATAGAGTGCT+GGG | + | chr1_2:68932077-68932096 | Msa0087890:three_prime_UTR | 25.0% |
| ! | AAGTTGCTTTCAGTACTATA+TGG | - | chr1_2:68929609-68929628 | None:intergenic | 30.0% |
| AGATGGGAAAAAAAGGTAAA+TGG | + | chr1_2:68929735-68929754 | Msa0087890:exon | 30.0% | |
| CAAAGACAAAGAAAAAGAGA+AGG | + | chr1_2:68929787-68929806 | Msa0087890:CDS | 30.0% | |
| CTGTTCCATTTGAAAAATTC+TGG | - | chr1_2:68929829-68929848 | None:intergenic | 30.0% | |
| TTGATATTCAGAATGAGCAA+AGG | + | chr1_2:68929999-68930018 | Msa0087890:CDS | 30.0% | |
| ! | TCCGAGTCCTTAAAATTTTA+AGG | + | chr1_2:68930208-68930227 | Msa0087890:intron | 30.0% |
| !! | CCCTTAAAATTTTAAGGACT+CGG | - | chr1_2:68930212-68930231 | None:intergenic | 30.0% |
| ! | CCGAGTCCTTAAAATTTTAA+GGG | + | chr1_2:68930209-68930228 | Msa0087890:intron | 30.0% |
| !! | GTCCTTAAAATTTTAAGGGT+CGG | + | chr1_2:68930213-68930232 | Msa0087890:intron | 30.0% |
| TCTGACATTGTTCACTTTAA+GGG | - | chr1_2:68930278-68930297 | None:intergenic | 30.0% | |
| ATCTGACATTGTTCACTTTA+AGG | - | chr1_2:68930279-68930298 | None:intergenic | 30.0% | |
| TTAAATCGTGGCGATAAATT+TGG | - | chr1_2:68930317-68930336 | None:intergenic | 30.0% | |
| AAATTTATCGCCACGATTTA+AGG | + | chr1_2:68930316-68930335 | Msa0087890:intron | 30.0% | |
| AATTTATCGCCACGATTTAA+GGG | + | chr1_2:68930317-68930336 | Msa0087890:intron | 30.0% | |
| GTCCTTGAAATTGTATAGTA+GGG | - | chr1_2:68930369-68930388 | None:intergenic | 30.0% | |
| AGTCCTTGAAATTGTATAGT+AGG | - | chr1_2:68930370-68930389 | None:intergenic | 30.0% | |
| TTCAAGGACTGAAATACTTA+TGG | + | chr1_2:68930380-68930399 | Msa0087890:intron | 30.0% | |
| GCATTTCTGTGATTTAGATT+AGG | - | chr1_2:68930604-68930623 | None:intergenic | 30.0% | |
| TTGTTTAGTGTATCCAAATG+AGG | + | chr1_2:68931069-68931088 | Msa0087890:intron | 30.0% | |
| ! | ACTTCATTTTGTTCCTCATT+TGG | - | chr1_2:68931085-68931104 | None:intergenic | 30.0% |
| !!! | AAATGTGGTTTTGTGCATAT+AGG | + | chr1_2:68931122-68931141 | Msa0087890:intron | 30.0% |
| ! | ATGGATTTTTGCGAATCAAA+AGG | + | chr1_2:68931186-68931205 | Msa0087890:CDS | 30.0% |
| ! | TTTTGTGTAGGAACCATTTA+TGG | - | chr1_2:68931277-68931296 | None:intergenic | 30.0% |
| ! | GTAGTTTTCTTCTTTTGTGT+AGG | - | chr1_2:68931289-68931308 | None:intergenic | 30.0% |
| ! | TTTTGGACTCAATTCTGTTA+AGG | - | chr1_2:68931334-68931353 | None:intergenic | 30.0% |
| TACTGAAACAATCCTCAAAA+TGG | - | chr1_2:68931368-68931387 | None:intergenic | 30.0% | |
| GATATAGCAGAATAACTTTG+AGG | - | chr1_2:68931405-68931424 | None:intergenic | 30.0% | |
| TATTCATTGTTTGTACTGTC+TGG | + | chr1_2:68932138-68932157 | Msa0087890:three_prime_UTR | 30.0% | |
| TTTGTGTGAAGGATTTGTAA+TGG | + | chr1_2:68932167-68932186 | Msa0087890:three_prime_UTR | 30.0% | |
| TCAGTACTATATGGTTGTGA+TGG | - | chr1_2:68929600-68929619 | None:intergenic | 35.0% | |
| GAGAAAGAGATGGGAAAAAA+AGG | + | chr1_2:68929728-68929747 | Msa0087890:exon | 35.0% | |
| !! | TGGCTTAAAAACTTGTTGAC+AGG | + | chr1_2:68929755-68929774 | Msa0087890:CDS | 35.0% |
| !! | GGCTTAAAAACTTGTTGACA+GGG | + | chr1_2:68929756-68929775 | Msa0087890:CDS | 35.0% |
| AGAAATTACTTCTTCGGTGA+CGG | + | chr1_2:68929961-68929980 | Msa0087890:CDS | 35.0% | |
| CATTTGAACCAGATGTCAAA+CGG | - | chr1_2:68930108-68930127 | None:intergenic | 35.0% | |
| ATGTGTATTTCGATCTCACT+TGG | + | chr1_2:68930171-68930190 | Msa0087890:CDS | 35.0% | |
| ! | GACCGACCCTTAAAATTTTA+AGG | - | chr1_2:68930218-68930237 | None:intergenic | 35.0% |
| GCAAATTTGAAGGACTAAAC+TGG | - | chr1_2:68930347-68930366 | None:intergenic | 35.0% | |
| GTATAGTAGGGCAAATTTGA+AGG | - | chr1_2:68930357-68930376 | None:intergenic | 35.0% | |
| TGCCCTACTATACAATTTCA+AGG | + | chr1_2:68930364-68930383 | Msa0087890:intron | 35.0% | |
| TCTAAATCACAGAAATGCCA+TGG | + | chr1_2:68930606-68930625 | Msa0087890:CDS | 35.0% | |
| ! | GAATATAAAGTGTGGTGCTA+TGG | - | chr1_2:68930884-68930903 | None:intergenic | 35.0% |
| TGTAAGCATAGTATCATGTC+TGG | + | chr1_2:68930972-68930991 | Msa0087890:intron | 35.0% | |
| !! | GGTTTTGTGCATATAGGAAA+TGG | + | chr1_2:68931128-68931147 | Msa0087890:intron | 35.0% |
| GACATTTGTTCTGCATAAGA+TGG | - | chr1_2:68931468-68931487 | None:intergenic | 35.0% | |
| CCATGTAACTTGGATACAAA+GGG | - | chr1_2:68931500-68931519 | None:intergenic | 35.0% | |
| TCTGTATTAGCCATGTAACT+TGG | - | chr1_2:68931510-68931529 | None:intergenic | 35.0% | |
| TGGCTAATACAGAATCATCA+AGG | + | chr1_2:68931517-68931536 | Msa0087890:CDS | 35.0% | |
| GGCTAATACAGAATCATCAA+GGG | + | chr1_2:68931518-68931537 | Msa0087890:CDS | 35.0% | |
| !! | AATGAATCTGGCCTTTGTTT+TGG | - | chr1_2:68931567-68931586 | None:intergenic | 35.0% |
| TTGAAGGAAGAAATGTTCCT+AGG | + | chr1_2:68931619-68931638 | Msa0087890:CDS | 35.0% | |
| CAAAGATCATCTTCACAAGT+AGG | + | chr1_2:68931654-68931673 | Msa0087890:CDS | 35.0% | |
| GCTTAATTGACCATGGATAT+TGG | - | chr1_2:68931698-68931717 | None:intergenic | 35.0% | |
| GTCAATTAAGCTTGACAGAT+CGG | + | chr1_2:68931707-68931726 | Msa0087890:CDS | 35.0% | |
| ACTCACATCATATGCAACAA+GGG | - | chr1_2:68931802-68931821 | None:intergenic | 35.0% | |
| TACTCACATCATATGCAACA+AGG | - | chr1_2:68931803-68931822 | None:intergenic | 35.0% | |
| CTTCTATTTAGTGTTGCACA+AGG | - | chr1_2:68931960-68931979 | None:intergenic | 35.0% | |
| ! | CTCAATGCTTACGTTTTTGT+TGG | - | chr1_2:68931996-68932015 | None:intergenic | 35.0% |
| ! | CAACAAAAACGTAAGCATTG+AGG | + | chr1_2:68931994-68932013 | Msa0087890:three_prime_UTR | 35.0% |
| TCTGGATTACATTTGTGTGA+AGG | + | chr1_2:68932156-68932175 | Msa0087890:three_prime_UTR | 35.0% | |
| AGGTACTTGAGAGAAAGAGA+TGG | + | chr1_2:68929718-68929737 | Msa0087890:exon | 40.0% | |
| GGTACTTGAGAGAAAGAGAT+GGG | + | chr1_2:68929719-68929738 | Msa0087890:exon | 40.0% | |
| GTTGTTGAAACAGGAGTAGT+TGG | - | chr1_2:68929857-68929876 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTGTTGTTGAAAC+AGG | - | chr1_2:68929866-68929885 | None:intergenic | 40.0% |
| ! | CCATCTCTTCTTCTCTTTTG+AGG | - | chr1_2:68929882-68929901 | None:intergenic | 40.0% |
| CCTCAAAAGAGAAGAAGAGA+TGG | + | chr1_2:68929879-68929898 | Msa0087890:CDS | 40.0% | |
| TTCAATTCCTTGGAAGCAGT+TGG | - | chr1_2:68929935-68929954 | None:intergenic | 40.0% | |
| TGTGTGAATGTTTGTGTGAC+AGG | + | chr1_2:68930411-68930430 | Msa0087890:intron | 40.0% | |
| !! | ATTGCGTGCTTTAAGAGGAT+TGG | + | chr1_2:68930444-68930463 | Msa0087890:CDS | 40.0% |
| CTTGGTGAGAAAACAAGCAA+AGG | + | chr1_2:68930495-68930514 | Msa0087890:CDS | 40.0% | |
| !! | CCTGAACAAGTCATTTTCCA+TGG | - | chr1_2:68930626-68930645 | None:intergenic | 40.0% |
| !! | CCATGGAAAATGACTTGTTC+AGG | + | chr1_2:68930623-68930642 | Msa0087890:CDS | 40.0% |
| CTATGCTTACACATACACAC+TGG | - | chr1_2:68930963-68930982 | None:intergenic | 40.0% | |
| CATAGTATCATGTCTGGTGT+CGG | + | chr1_2:68930978-68930997 | Msa0087890:intron | 40.0% | |
| !!! | TGTCGGTTTTAGTGCTTCAT+AGG | + | chr1_2:68930995-68931014 | Msa0087890:intron | 40.0% |
| TTTAGTGCTTCATAGGTCAC+TGG | + | chr1_2:68931002-68931021 | Msa0087890:intron | 40.0% | |
| TGCATATAGGAAATGGACAG+AGG | + | chr1_2:68931135-68931154 | Msa0087890:intron | 40.0% | |
| CTCAATTCTGTTAAGGCTGA+TGG | - | chr1_2:68931327-68931346 | None:intergenic | 40.0% | |
| ! | ATCATCCTTTTGCTTTCCCT+AGG | + | chr1_2:68931442-68931461 | Msa0087890:CDS | 40.0% |
| TGGATACAAAGGGTAGTCAT+AGG | - | chr1_2:68931490-68931509 | None:intergenic | 40.0% | |
| CCCTTTGTATCCAAGTTACA+TGG | + | chr1_2:68931497-68931516 | Msa0087890:CDS | 40.0% | |
| GCCATGTAACTTGGATACAA+AGG | - | chr1_2:68931501-68931520 | None:intergenic | 40.0% | |
| CACAAAGTGCACCAAAACAA+AGG | + | chr1_2:68931553-68931572 | Msa0087890:CDS | 40.0% | |
| AAAGGCCAGATTCATTTGAG+AGG | + | chr1_2:68931571-68931590 | Msa0087890:CDS | 40.0% | |
| AGTTGCCTCTCAAATGAATC+TGG | - | chr1_2:68931579-68931598 | None:intergenic | 40.0% | |
| CTCAGAACTACCAATATCCA+TGG | + | chr1_2:68931685-68931704 | Msa0087890:CDS | 40.0% | |
| CTGTCAAGCTTAATTGACCA+TGG | - | chr1_2:68931705-68931724 | None:intergenic | 40.0% | |
| AATTAAGCTTGACAGATCGG+CGG | + | chr1_2:68931710-68931729 | Msa0087890:CDS | 40.0% | |
| !!! | ATTGTTTTGATTGCAGCCAG+AGG | + | chr1_2:68931913-68931932 | Msa0087890:intron | 40.0% |
| !!! | TTGTTTTGATTGCAGCCAGA+GGG | + | chr1_2:68931914-68931933 | Msa0087890:intron | 40.0% |
| AAGGAATCATGCCATTGCTG+TGG | + | chr1_2:68930018-68930037 | Msa0087890:CDS | 45.0% | |
| TCTGTGATCCGTTTGACATC+TGG | + | chr1_2:68930097-68930116 | Msa0087890:CDS | 45.0% | |
| TATCGCCACGATTTAAGGGT+CGG | + | chr1_2:68930321-68930340 | Msa0087890:intron | 45.0% | |
| GTTTGTGTGACAGGCAAGAA+AGG | + | chr1_2:68930420-68930439 | Msa0087890:intron | 45.0% | |
| !! | AAGGCATTGCGTGCTTTAAG+AGG | + | chr1_2:68930439-68930458 | Msa0087890:CDS | 45.0% |
| ! | AAGAGGATTGGTGAAGTTGC+AGG | + | chr1_2:68930456-68930475 | Msa0087890:CDS | 45.0% |
| !! | TGAAGTTGCAGGCACTGATA+AGG | + | chr1_2:68930467-68930486 | Msa0087890:CDS | 45.0% |
| !! | GAAGTTGCAGGCACTGATAA+GGG | + | chr1_2:68930468-68930487 | Msa0087890:CDS | 45.0% |
| !! | AAGTTGCAGGCACTGATAAG+GGG | + | chr1_2:68930469-68930488 | Msa0087890:CDS | 45.0% |
| ACTCAGATGTATGCAGGCTT+TGG | + | chr1_2:68930522-68930541 | Msa0087890:CDS | 45.0% | |
| GCTTTCCTTCTGACACCATT+CGG | - | chr1_2:68930582-68930601 | None:intergenic | 45.0% | |
| !! | ACTGTAACTTGCTGGATGCT+CGG | - | chr1_2:68930916-68930935 | None:intergenic | 45.0% |
| ! | TCTGAGACACTGTAACTTGC+TGG | - | chr1_2:68930924-68930943 | None:intergenic | 45.0% |
| ATAGGAAATGGACAGAGGCT+TGG | + | chr1_2:68931140-68931159 | Msa0087890:intron | 45.0% | |
| GGAAGACAACATCAAGATCG+TGG | + | chr1_2:68931161-68931180 | Msa0087890:CDS | 45.0% | |
| CAACATCAAGATCGTGGAGA+TGG | + | chr1_2:68931167-68931186 | Msa0087890:CDS | 45.0% | |
| ! | TTGAGTCCAAAAGCATGCAG+TGG | + | chr1_2:68931342-68931361 | Msa0087890:CDS | 45.0% |
| ! | AAATGGCCACTGCATGCTTT+TGG | - | chr1_2:68931351-68931370 | None:intergenic | 45.0% |
| GTTCTGCATAAGATGGCCTA+GGG | - | chr1_2:68931461-68931480 | None:intergenic | 45.0% | |
| TGTTCTGCATAAGATGGCCT+AGG | - | chr1_2:68931462-68931481 | None:intergenic | 45.0% | |
| CATTTGAGAGGCAACTGAGT+CGG | + | chr1_2:68931583-68931602 | Msa0087890:CDS | 45.0% | |
| ACTGAGTCGGCGAAGAATTT+CGG | + | chr1_2:68931596-68931615 | Msa0087890:CDS | 45.0% | |
| GATGATCTTTGCATCCTCAC+TGG | - | chr1_2:68931645-68931664 | None:intergenic | 45.0% | |
| AGCTACACCAACTGCTTCCA+AGG | + | chr1_2:68929925-68929944 | Msa0087890:CDS | 50.0% | |
| GGCAACACTCAGATGTATGC+AGG | + | chr1_2:68930516-68930535 | Msa0087890:CDS | 50.0% | |
| AAGCTAGAGCTCGTGCTCAA+AGG | + | chr1_2:68930554-68930573 | Msa0087890:CDS | 50.0% | |
| TCGTGCTCAAAGGATCCGAA+TGG | + | chr1_2:68930564-68930583 | Msa0087890:CDS | 50.0% | |
| ! | AGGATCCGAATGGTGTCAGA+AGG | + | chr1_2:68930574-68930593 | Msa0087890:CDS | 50.0% |
| ! | TGCTGCTTCTGCTTGTAGAG+TGG | - | chr1_2:68931212-68931231 | None:intergenic | 50.0% |
| TCTGTTAAGGCTGATGGAGC+TGG | - | chr1_2:68931321-68931340 | None:intergenic | 50.0% | |
| !! | AGCATGCAGTGGCCATTTTG+AGG | + | chr1_2:68931353-68931372 | Msa0087890:CDS | 50.0% |
| GATGGCCTAGGGAAAGCAAA+AGG | - | chr1_2:68931450-68931469 | None:intergenic | 50.0% | |
| CGGCGAAGAATTTCGGTTGA+AGG | + | chr1_2:68931603-68931622 | Msa0087890:CDS | 50.0% | |
| GAAATGTTCCTAGGCCAGTG+AGG | + | chr1_2:68931628-68931647 | Msa0087890:CDS | 50.0% | |
| TCACTCAAAGACAGCGAGTG+TGG | + | chr1_2:68931735-68931754 | Msa0087890:CDS | 50.0% | |
| ACTCAGTACCTATCTCCCTC+TGG | - | chr1_2:68931932-68931951 | None:intergenic | 50.0% | |
| TGTAGCAGCAGCCACAGCAA+TGG | - | chr1_2:68930032-68930051 | None:intergenic | 55.0% | |
| ACTGGCCGACCCTTAAATCG+TGG | - | chr1_2:68930329-68930348 | None:intergenic | 55.0% | |
| !! | GGCACTGATAAGGGGTCACT+TGG | + | chr1_2:68930477-68930496 | Msa0087890:CDS | 55.0% |
| !! | ACACTGGTGTCGTGTCGTGT+CGG | - | chr1_2:68930947-68930966 | None:intergenic | 55.0% |
| ! | CTTTGCATCCTCACTGGCCT+AGG | - | chr1_2:68931639-68931658 | None:intergenic | 55.0% |
| GATTGCAGCCAGAGGGAGAT+AGG | + | chr1_2:68931921-68931940 | Msa0087890:intron | 55.0% | |
| TGTGGCTGCTGCTACAGCCG+CGG | + | chr1_2:68930036-68930055 | Msa0087890:CDS | 65.0% | |
| CACTGCTGCATCAGCTGCCG+CGG | - | chr1_2:68930056-68930075 | None:intergenic | 65.0% | |
| CGCGGCAGCTGATGCAGCAG+TGG | + | chr1_2:68930054-68930073 | Msa0087890:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 68929535 | 68932244 | 68929535 | ID=Msa0087890;Name=Msa0087890 |
| chr1_2 | mRNA | 68929535 | 68932244 | 68929535 | ID=Msa0087890-mRNA-1;Parent=Msa0087890;Name=Msa0087890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=202|1|1|1|1|1|4|295|457 |
| chr1_2 | exon | 68929535 | 68930192 | 68929535 | ID=Msa0087890-mRNA-1:exon:23611;Parent=Msa0087890-mRNA-1 |
| chr1_2 | exon | 68930433 | 68930657 | 68930433 | ID=Msa0087890-mRNA-1:exon:23612;Parent=Msa0087890-mRNA-1 |
| chr1_2 | exon | 68931144 | 68931815 | 68931144 | ID=Msa0087890-mRNA-1:exon:23613;Parent=Msa0087890-mRNA-1 |
| chr1_2 | exon | 68931929 | 68932244 | 68931929 | ID=Msa0087890-mRNA-1:exon:23614;Parent=Msa0087890-mRNA-1 |
| chr1_2 | five_prime_UTR | 68929535 | 68929736 | 68929535 | ID=Msa0087890-mRNA-1:five_prime_utr;Parent=Msa0087890-mRNA-1 |
| chr1_2 | CDS | 68929737 | 68930192 | 68929737 | ID=Msa0087890-mRNA-1:cds;Parent=Msa0087890-mRNA-1 |
| chr1_2 | CDS | 68930433 | 68930657 | 68930433 | ID=Msa0087890-mRNA-1:cds;Parent=Msa0087890-mRNA-1 |
| chr1_2 | CDS | 68931144 | 68931815 | 68931144 | ID=Msa0087890-mRNA-1:cds;Parent=Msa0087890-mRNA-1 |
| chr1_2 | CDS | 68931929 | 68931949 | 68931929 | ID=Msa0087890-mRNA-1:cds;Parent=Msa0087890-mRNA-1 |
| chr1_2 | three_prime_UTR | 68931950 | 68932244 | 68931950 | ID=Msa0087890-mRNA-1:three_prime_utr;Parent=Msa0087890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
