Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040200 | sp|A0A1P8B590|IQD19_ARATH | 44.654 | 477 | 146 | 19 | 1 | 453 | 60 | 442 | 4.83e-106 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040200 | Msa0050150 | 0.825176 | 5.407974e-54 | -8.615850e-47 |
| Msa0040200 | Msa0063190 | 0.803987 | 2.680956e-49 | -8.615850e-47 |
| Msa0040200 | Msa0087890 | 0.878650 | 2.364912e-69 | -8.615850e-47 |
| Msa0040200 | Msa0134560 | 0.903425 | 3.515527e-79 | -8.615850e-47 |
| Msa0040200 | Msa0401060 | 0.815260 | 1.012805e-51 | -8.615850e-47 |
| Msa0040200 | Msa0447870 | 0.818466 | 1.931210e-52 | -8.615850e-47 |
| Msa0040200 | Msa0458100 | 0.810602 | 1.062382e-50 | -8.615850e-47 |
| Msa0040200 | Msa0468700 | 0.813245 | 2.822215e-51 | -8.615850e-47 |
| Msa0040200 | Msa0475820 | 0.805571 | 1.252064e-49 | -8.615850e-47 |
| Msa0040200 | Msa0513640 | 0.802595 | 5.207598e-49 | -8.615850e-47 |
| Msa0040200 | Msa0514580 | 0.820279 | 7.458063e-53 | -8.615850e-47 |
| Msa0040200 | Msa0553750 | 0.825622 | 4.238732e-54 | -8.615850e-47 |
| Msa0040200 | Msa0572830 | 0.817853 | 2.657827e-52 | -8.615850e-47 |
| Msa0040200 | Msa0607800 | 0.806251 | 9.005902e-50 | -8.615850e-47 |
| Msa0040200 | Msa0620510 | 0.833391 | 5.477862e-56 | -8.615850e-47 |
| Msa0040200 | Msa0648040 | 0.802900 | 4.504477e-49 | -8.615850e-47 |
| Msa0040200 | Msa0688380 | 0.844655 | 6.607127e-59 | -8.615850e-47 |
| Msa0040200 | Msa0690740 | 0.802743 | 4.854447e-49 | -8.615850e-47 |
| Msa0040200 | Msa0707260 | 0.837997 | 3.735963e-57 | -8.615850e-47 |
| Msa0040200 | Msa0756330 | 0.801958 | 7.043497e-49 | -8.615850e-47 |
| Msa0040200 | Msa0774060 | 0.803617 | 3.200481e-49 | -8.615850e-47 |
| Msa0040200 | Msa0861440 | 0.811276 | 7.592549e-51 | -8.615850e-47 |
| Msa0040200 | Msa1021560 | 0.851414 | 9.011956e-61 | -8.615850e-47 |
| Msa0040200 | Msa1104110 | 0.802545 | 5.331243e-49 | -8.615850e-47 |
| Msa0040200 | Msa1105540 | 0.801808 | 7.560749e-49 | -8.615850e-47 |
| Msa0040200 | Msa1148930 | 0.823929 | 1.062817e-53 | -8.615850e-47 |
| Msa0040200 | Msa1188340 | 0.815596 | 8.525062e-52 | -8.615850e-47 |
| Msa0040200 | Msa1215990 | 0.832261 | 1.045836e-55 | -8.615850e-47 |
| Msa0040200 | Msa1223390 | 0.800151 | 1.648422e-48 | -8.615850e-47 |
| Msa0040200 | Msa1240940 | 0.821904 | 3.150765e-53 | -8.615850e-47 |
| Msa0040200 | Msa1282300 | 0.839151 | 1.881263e-57 | -8.615850e-47 |
| Msa0040200 | Msa1306570 | 0.821849 | 3.245012e-53 | -8.615850e-47 |
| Msa0040200 | Msa1375350 | 0.821016 | 5.052205e-53 | -8.615850e-47 |
| Msa0040200 | Msa1393560 | 0.814362 | 1.601196e-51 | -8.615850e-47 |
| Msa0040200 | Msa1426320 | 0.812249 | 4.661740e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040200 | MtrunA17_Chr1g0204901 | 98.681 | 455 | 6 | 0 | 1 | 455 | 1 | 455 | 0.0 | 930 |
| Msa0040200 | MtrunA17_Chr1g0166431 | 64.668 | 467 | 121 | 11 | 1 | 455 | 7 | 441 | 0.0 | 520 |
| Msa0040200 | MtrunA17_Chr8g0340761 | 38.724 | 439 | 191 | 17 | 1 | 400 | 1 | 400 | 8.51e-44 | 158 |
| Msa0040200 | MtrunA17_Chr8g0389781 | 38.248 | 468 | 203 | 20 | 1 | 420 | 1 | 430 | 1.34e-38 | 145 |
| Msa0040200 | MtrunA17_Chr4g0057321 | 32.704 | 477 | 204 | 15 | 1 | 419 | 1 | 418 | 2.59e-38 | 144 |
| Msa0040200 | MtrunA17_Chr6g0472551 | 35.714 | 322 | 125 | 11 | 133 | 386 | 114 | 421 | 8.66e-34 | 132 |
| Msa0040200 | MtrunA17_Chr7g0273951 | 30.829 | 386 | 190 | 11 | 1 | 370 | 1 | 325 | 9.46e-32 | 125 |
| Msa0040200 | MtrunA17_Chr1g0203711 | 36.740 | 411 | 179 | 13 | 34 | 381 | 9 | 401 | 1.21e-31 | 125 |
| Msa0040200 | MtrunA17_Chr2g0330921 | 31.266 | 387 | 194 | 17 | 1 | 371 | 1 | 331 | 1.19e-26 | 110 |
| Msa0040200 | MtrunA17_Chr4g0020671 | 30.541 | 370 | 179 | 17 | 43 | 369 | 22 | 356 | 2.63e-24 | 104 |
| Msa0040200 | MtrunA17_Chr8g0346021 | 44.231 | 208 | 102 | 5 | 1 | 205 | 1 | 197 | 3.14e-24 | 105 |
| Msa0040200 | MtrunA17_Chr7g0273861 | 29.658 | 263 | 149 | 10 | 134 | 369 | 123 | 376 | 4.73e-20 | 92.0 |
| Msa0040200 | MtrunA17_Chr3g0126901 | 61.404 | 114 | 38 | 3 | 74 | 187 | 56 | 163 | 1.27e-18 | 87.8 |
| Msa0040200 | MtrunA17_Chr4g0060381 | 60.000 | 65 | 26 | 0 | 136 | 200 | 100 | 164 | 2.20e-17 | 84.7 |
| Msa0040200 | MtrunA17_Chr1g0172611 | 56.311 | 103 | 41 | 1 | 84 | 182 | 49 | 151 | 2.92e-17 | 83.2 |
| Msa0040200 | MtrunA17_Chr8g0371131 | 56.923 | 65 | 28 | 0 | 135 | 199 | 70 | 134 | 4.34e-17 | 77.8 |
| Msa0040200 | MtrunA17_Chr4g0025441 | 71.698 | 53 | 15 | 0 | 135 | 187 | 95 | 147 | 4.43e-17 | 83.2 |
| Msa0040200 | MtrunA17_Chr1g0200161 | 50.685 | 73 | 36 | 0 | 132 | 204 | 137 | 209 | 1.57e-16 | 81.6 |
| Msa0040200 | MtrunA17_Chr6g0462191 | 54.701 | 117 | 53 | 0 | 85 | 201 | 56 | 172 | 2.41e-16 | 80.9 |
| Msa0040200 | MtrunA17_Chr1g0181581 | 37.500 | 112 | 57 | 2 | 117 | 228 | 103 | 201 | 2.73e-16 | 80.9 |
| Msa0040200 | MtrunA17_Chr3g0135851 | 47.619 | 105 | 53 | 1 | 135 | 239 | 90 | 192 | 5.26e-16 | 80.1 |
| Msa0040200 | MtrunA17_Chr1g0146931 | 67.925 | 53 | 17 | 0 | 135 | 187 | 121 | 173 | 6.39e-16 | 79.7 |
| Msa0040200 | MtrunA17_Chr7g0263731 | 36.538 | 156 | 94 | 3 | 85 | 237 | 58 | 211 | 2.61e-14 | 74.7 |
| Msa0040200 | MtrunA17_Chr2g0283321 | 32.331 | 133 | 74 | 2 | 128 | 260 | 55 | 171 | 1.46e-12 | 68.2 |
| Msa0040200 | MtrunA17_Chr4g0045641 | 41.176 | 68 | 40 | 0 | 135 | 202 | 145 | 212 | 2.55e-12 | 68.9 |
| Msa0040200 | MtrunA17_Chr5g0416161 | 38.144 | 97 | 48 | 1 | 104 | 200 | 99 | 183 | 5.87e-12 | 67.8 |
| Msa0040200 | MtrunA17_Chr1g0156121 | 29.193 | 161 | 100 | 3 | 47 | 198 | 31 | 186 | 1.26e-11 | 67.0 |
| Msa0040200 | MtrunA17_Chr2g0330051 | 46.903 | 113 | 47 | 2 | 135 | 247 | 77 | 176 | 8.79e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040200 | AT4G14750.1 | 44.654 | 477 | 146 | 19 | 1 | 453 | 1 | 383 | 8.31e-108 | 325 |
| Msa0040200 | AT4G14750.3 | 45.053 | 475 | 145 | 19 | 1 | 451 | 60 | 442 | 4.53e-107 | 325 |
| Msa0040200 | AT4G14750.2 | 44.654 | 477 | 146 | 19 | 1 | 453 | 60 | 442 | 4.91e-107 | 325 |
| Msa0040200 | AT3G16490.1 | 36.516 | 419 | 152 | 17 | 1 | 385 | 1 | 339 | 3.94e-34 | 132 |
| Msa0040200 | AT4G23060.1 | 33.645 | 321 | 174 | 10 | 136 | 424 | 167 | 480 | 5.96e-30 | 122 |
| Msa0040200 | AT4G29150.1 | 36.395 | 294 | 135 | 13 | 125 | 399 | 120 | 380 | 1.55e-28 | 116 |
| Msa0040200 | AT4G00820.1 | 41.250 | 160 | 84 | 2 | 51 | 205 | 47 | 201 | 6.10e-26 | 110 |
| Msa0040200 | AT5G03040.1 | 35.922 | 206 | 107 | 6 | 1 | 204 | 1 | 183 | 1.73e-24 | 105 |
| Msa0040200 | AT5G03040.3 | 35.922 | 206 | 107 | 6 | 1 | 204 | 1 | 183 | 1.73e-24 | 105 |
| Msa0040200 | AT5G03040.2 | 35.922 | 206 | 107 | 6 | 1 | 204 | 1 | 183 | 1.73e-24 | 105 |
| Msa0040200 | AT1G51960.1 | 32.765 | 293 | 132 | 11 | 135 | 412 | 99 | 341 | 3.11e-23 | 100 |
| Msa0040200 | AT1G01110.2 | 67.606 | 71 | 23 | 0 | 135 | 205 | 120 | 190 | 3.46e-22 | 99.8 |
| Msa0040200 | AT1G72670.1 | 31.855 | 248 | 111 | 6 | 1 | 248 | 1 | 190 | 1.00e-20 | 94.4 |
| Msa0040200 | AT3G49260.3 | 60.000 | 70 | 28 | 0 | 135 | 204 | 119 | 188 | 1.06e-20 | 94.7 |
| Msa0040200 | AT3G49260.1 | 60.000 | 70 | 28 | 0 | 135 | 204 | 119 | 188 | 1.11e-20 | 94.7 |
| Msa0040200 | AT3G49260.4 | 60.000 | 70 | 28 | 0 | 135 | 204 | 119 | 188 | 1.11e-20 | 94.7 |
| Msa0040200 | AT3G49260.2 | 60.000 | 70 | 28 | 0 | 135 | 204 | 119 | 188 | 1.11e-20 | 94.7 |
| Msa0040200 | AT3G52290.1 | 54.472 | 123 | 55 | 1 | 87 | 209 | 59 | 180 | 4.53e-19 | 89.7 |
| Msa0040200 | AT2G26180.1 | 42.657 | 143 | 67 | 3 | 106 | 248 | 56 | 183 | 1.38e-18 | 88.2 |
| Msa0040200 | AT5G13460.1 | 29.851 | 268 | 143 | 8 | 135 | 376 | 110 | 358 | 1.73e-18 | 87.8 |
| Msa0040200 | AT5G07240.1 | 49.689 | 161 | 61 | 4 | 46 | 196 | 16 | 166 | 3.26e-18 | 86.7 |
| Msa0040200 | AT5G07240.2 | 49.689 | 161 | 61 | 4 | 46 | 196 | 62 | 212 | 5.06e-18 | 86.7 |
| Msa0040200 | AT1G14380.1 | 30.846 | 201 | 95 | 5 | 1 | 200 | 1 | 158 | 2.86e-17 | 85.1 |
| Msa0040200 | AT1G14380.3 | 30.846 | 201 | 95 | 5 | 1 | 200 | 1 | 158 | 2.86e-17 | 85.1 |
| Msa0040200 | AT1G14380.4 | 30.846 | 201 | 95 | 5 | 1 | 200 | 1 | 158 | 2.86e-17 | 85.1 |
| Msa0040200 | AT1G14380.6 | 30.846 | 201 | 95 | 5 | 1 | 200 | 1 | 158 | 3.95e-17 | 84.3 |
| Msa0040200 | AT1G14380.5 | 30.846 | 201 | 95 | 5 | 1 | 200 | 1 | 158 | 3.95e-17 | 84.3 |
| Msa0040200 | AT1G14380.2 | 30.846 | 201 | 95 | 5 | 1 | 200 | 1 | 158 | 3.95e-17 | 84.3 |
| Msa0040200 | AT1G14380.7 | 30.846 | 201 | 95 | 5 | 1 | 200 | 1 | 158 | 5.28e-17 | 84.0 |
| Msa0040200 | AT5G62070.1 | 45.342 | 161 | 60 | 3 | 46 | 188 | 19 | 169 | 7.28e-17 | 82.8 |
| Msa0040200 | AT3G22190.3 | 67.857 | 56 | 18 | 0 | 132 | 187 | 84 | 139 | 8.69e-17 | 82.8 |
| Msa0040200 | AT3G22190.2 | 67.857 | 56 | 18 | 0 | 132 | 187 | 84 | 139 | 8.69e-17 | 82.8 |
| Msa0040200 | AT3G22190.4 | 67.857 | 56 | 18 | 0 | 132 | 187 | 84 | 139 | 8.69e-17 | 82.8 |
| Msa0040200 | AT3G22190.1 | 67.857 | 56 | 18 | 0 | 132 | 187 | 84 | 139 | 8.69e-17 | 82.8 |
| Msa0040200 | AT4G10640.1 | 35.417 | 144 | 66 | 4 | 48 | 191 | 39 | 155 | 3.01e-16 | 80.9 |
| Msa0040200 | AT1G18840.1 | 48.611 | 72 | 37 | 0 | 129 | 200 | 102 | 173 | 5.81e-16 | 80.9 |
| Msa0040200 | AT1G18840.3 | 48.611 | 72 | 37 | 0 | 129 | 200 | 102 | 173 | 5.81e-16 | 80.9 |
| Msa0040200 | AT1G18840.2 | 48.611 | 72 | 37 | 0 | 129 | 200 | 102 | 173 | 5.81e-16 | 80.9 |
| Msa0040200 | AT3G51380.1 | 51.163 | 86 | 38 | 2 | 114 | 199 | 19 | 100 | 8.83e-16 | 73.6 |
| Msa0040200 | AT1G17480.1 | 59.016 | 61 | 25 | 0 | 138 | 198 | 96 | 156 | 1.63e-15 | 78.2 |
| Msa0040200 | AT3G59690.2 | 43.243 | 74 | 42 | 0 | 129 | 202 | 162 | 235 | 3.37e-15 | 78.2 |
| Msa0040200 | AT3G59690.1 | 43.243 | 74 | 42 | 0 | 129 | 202 | 162 | 235 | 3.37e-15 | 78.2 |
| Msa0040200 | AT3G49380.1 | 28.470 | 281 | 145 | 8 | 96 | 369 | 66 | 297 | 7.84e-15 | 76.3 |
| Msa0040200 | AT1G74690.1 | 53.846 | 65 | 30 | 0 | 136 | 200 | 113 | 177 | 9.13e-15 | 77.0 |
| Msa0040200 | AT3G09710.1 | 46.667 | 75 | 40 | 0 | 132 | 206 | 104 | 178 | 1.40e-14 | 75.9 |
| Msa0040200 | AT3G09710.2 | 46.667 | 75 | 40 | 0 | 132 | 206 | 104 | 178 | 1.80e-14 | 75.9 |
| Msa0040200 | AT2G43680.1 | 40.541 | 74 | 44 | 0 | 129 | 202 | 316 | 389 | 1.15e-13 | 73.6 |
| Msa0040200 | AT2G43680.4 | 40.541 | 74 | 44 | 0 | 129 | 202 | 315 | 388 | 1.18e-13 | 73.6 |
| Msa0040200 | AT2G43680.2 | 40.541 | 74 | 44 | 0 | 129 | 202 | 315 | 388 | 1.18e-13 | 73.6 |
| Msa0040200 | AT2G43680.3 | 40.541 | 74 | 44 | 0 | 129 | 202 | 315 | 388 | 1.18e-13 | 73.6 |
| Msa0040200 | AT2G43680.5 | 40.541 | 74 | 44 | 0 | 129 | 202 | 315 | 388 | 1.18e-13 | 73.6 |
| Msa0040200 | AT1G19870.2 | 34.127 | 126 | 74 | 3 | 120 | 236 | 15 | 140 | 1.58e-12 | 70.1 |
| Msa0040200 | AT1G19870.1 | 35.135 | 111 | 64 | 2 | 134 | 236 | 213 | 323 | 1.75e-12 | 70.1 |
| Msa0040200 | AT2G26410.2 | 41.379 | 87 | 50 | 1 | 121 | 206 | 132 | 218 | 1.89e-12 | 69.7 |
| Msa0040200 | AT2G26410.1 | 41.379 | 87 | 50 | 1 | 121 | 206 | 132 | 218 | 1.89e-12 | 69.7 |
| Msa0040200 | AT2G02790.1 | 34.259 | 108 | 63 | 2 | 100 | 200 | 65 | 171 | 2.59e-12 | 69.3 |
| Msa0040200 | AT2G02790.2 | 34.259 | 108 | 63 | 2 | 100 | 200 | 65 | 171 | 2.75e-12 | 69.3 |
| Msa0040200 | AT2G02790.3 | 34.259 | 108 | 63 | 2 | 100 | 200 | 65 | 171 | 2.75e-12 | 69.3 |
Find 91 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAATCTGGCCTTTGTTT+TGG | 0.265547 | 1_1:-70286865 | None:intergenic |
| GAAAATAGATATTCCATAAA+TGG | 0.268629 | 1_1:+70286562 | Msa0040200:CDS |
| AAATGGCCACTGTATGCTTT+TGG | 0.293561 | 1_1:-70286649 | None:intergenic |
| ACTGAGTCGGCGAAGAATTT+CGG | 0.307539 | 1_1:+70286897 | Msa0040200:CDS |
| TATTCATTGTTTGTACTGTC+TGG | 0.322482 | 1_1:+70287439 | Msa0040200:three_prime_UTR |
| AAGAGGATTGGTGAAGTTGC+AGG | 0.322775 | 1_1:+70285750 | Msa0040200:CDS |
| GCTTAATTGACCATGGATAT+TGG | 0.331995 | 1_1:-70286996 | None:intergenic |
| TTTGAGGCTGTTGTTGAAAC+AGG | 0.339969 | 1_1:-70285165 | None:intergenic |
| TACTGAAACAATCCTCAAAA+TGG | 0.341390 | 1_1:-70286666 | None:intergenic |
| AAGTTGCTTTCAGTACTATA+TGG | 0.354723 | 1_1:-70284914 | None:intergenic |
| TTCGGAATTATTCAATTCCT+TGG | 0.358169 | 1_1:-70285244 | None:intergenic |
| TGTCATTGAAGAAGTAATTT+CGG | 0.360028 | 1_1:-70285262 | None:intergenic |
| CATTTGAACCAGAAGTTAAC+CGG | 0.370042 | 1_1:-70285407 | None:intergenic |
| GAAGTTGCAGGCACTGATAA+GGG | 0.372077 | 1_1:+70285762 | Msa0040200:CDS |
| CCATGGAAAATGACTTGTTC+AGG | 0.374329 | 1_1:+70285917 | Msa0040200:CDS |
| TTTGATGTAACAGTTAGTTT+AGG | 0.380732 | 1_1:+70284851 | Msa0040200:five_prime_UTR |
| GATTGCAGCCAGAGGGAGAT+AGG | 0.395111 | 1_1:+70287222 | Msa0040200:intron |
| GCTGTGATCCGGTTAACTTC+TGG | 0.398739 | 1_1:+70285399 | Msa0040200:CDS |
| GTTGTTGAAACAGGAGTAGT+TGG | 0.410248 | 1_1:-70285156 | None:intergenic |
| GCATTTCTGTGATTTAGATT+AGG | 0.412617 | 1_1:-70285895 | None:intergenic |
| AGTTGCCTCTCAAATGAATC+TGG | 0.422643 | 1_1:-70286877 | None:intergenic |
| GCTTTCCTTCTGACACCATT+CGG | 0.437655 | 1_1:-70285873 | None:intergenic |
| GACATTTGTTCTGCATAAGA+TGG | 0.440761 | 1_1:-70286766 | None:intergenic |
| CTTTGCATCCTCACTGGCCT+AGG | 0.440875 | 1_1:-70286937 | None:intergenic |
| CTCAATTCTGTTAAGGCTGA+TGG | 0.443966 | 1_1:-70286625 | None:intergenic |
| AAGCTGCAGCTGCTGTGATC+CGG | 0.446246 | 1_1:+70285388 | Msa0040200:CDS |
| TGAAGTTGCAGGCACTGATA+AGG | 0.452871 | 1_1:+70285761 | Msa0040200:CDS |
| AAGGCATTGCGTGCTTTAAG+AGG | 0.452954 | 1_1:+70285733 | Msa0040200:CDS |
| ATCCATGTTGTTAGTTTACT+AGG | 0.454299 | 1_1:+70285006 | Msa0040200:five_prime_UTR |
| TCTGTATTAGCCATGTAACT+TGG | 0.457832 | 1_1:-70286808 | None:intergenic |
| CGGCGAAGAATTTCGGTTGA+AGG | 0.465707 | 1_1:+70286904 | Msa0040200:CDS |
| CATTGCTGTGGCTGCTGCTA+CGG | 0.467309 | 1_1:+70285332 | Msa0040200:CDS |
| CCCTTTGTATCCAAGTTACA+TGG | 0.469065 | 1_1:+70286798 | Msa0040200:CDS |
| ATTGCGTGCTTTAAGAGGAT+TGG | 0.475160 | 1_1:+70285738 | Msa0040200:CDS |
| TGTTCTGCATAAGATGGCCT+AGG | 0.475810 | 1_1:-70286760 | None:intergenic |
| ACTCAGATGTATGCAGGCTT+TGG | 0.478305 | 1_1:+70285816 | Msa0040200:CDS |
| GTCAATTAAGCTTGACAGAT+CGG | 0.481004 | 1_1:+70287008 | Msa0040200:CDS |
| GTTTGTGTGACAGGCAAGAA+AGG | 0.494775 | 1_1:+70285714 | Msa0040200:intron |
| TGCGGCAGCTGATGCAGCAG+TGG | 0.496678 | 1_1:+70285356 | Msa0040200:CDS |
| CCTCAAAAGAGAAGAAGAGA+TGG | 0.505393 | 1_1:+70285181 | Msa0040200:CDS |
| TGGATACAAAGGGTAGTCAT+AGG | 0.508034 | 1_1:-70286788 | None:intergenic |
| GATGATCTTTGCATCCTCAC+TGG | 0.511217 | 1_1:-70286943 | None:intergenic |
| CAACATCAAGATCGTGGAGA+TGG | 0.513083 | 1_1:+70286468 | Msa0040200:CDS |
| ATAGGAAATGGACAGAGGCT+TGG | 0.519830 | 1_1:+70286441 | Msa0040200:intron |
| ATGCGTCTTTCGATCTCACT+TGG | 0.521493 | 1_1:+70285473 | Msa0040200:CDS |
| CGTAGCAGCAGCCACAGCAA+TGG | 0.524999 | 1_1:-70285331 | None:intergenic |
| CAAAGATCATCTTCACAAGT+AGG | 0.528514 | 1_1:+70286955 | Msa0040200:CDS |
| TGATATATATCTAATTAACT+TGG | 0.529297 | 1_1:-70287518 | None:intergenic |
| TGGCTAATACAGAATCATCA+AGG | 0.530539 | 1_1:+70286818 | Msa0040200:CDS |
| TTTGTGTGAAGGATTTGTAA+TGG | 0.530862 | 1_1:+70287468 | Msa0040200:three_prime_UTR |
| GGCACTGATAAGGGGTCACT+TGG | 0.533686 | 1_1:+70285771 | Msa0040200:CDS |
| GGCAACACTCAGATGTATGC+AGG | 0.534937 | 1_1:+70285810 | Msa0040200:CDS |
| CCATGTAACTTGGATACAAA+GGG | 0.536026 | 1_1:-70286798 | None:intergenic |
| TTCAATTCCTTGGAAGCTGT+CGG | 0.542435 | 1_1:-70285234 | None:intergenic |
| AGCTACACCGACAGCTTCCA+AGG | 0.545619 | 1_1:+70285227 | Msa0040200:CDS |
| GATATAGCAGAATAACATTG+AGG | 0.548121 | 1_1:-70286703 | None:intergenic |
| TCAGTACTATATGGTTGTGA+TGG | 0.550050 | 1_1:-70284905 | None:intergenic |
| GCCATGTAACTTGGATACAA+AGG | 0.552992 | 1_1:-70286799 | None:intergenic |
| TGTGGCTGCTGCTACGGCTG+CGG | 0.553963 | 1_1:+70285338 | Msa0040200:CDS |
| TCTGTTAAGGCTGATGGAGC+TGG | 0.555014 | 1_1:-70286619 | None:intergenic |
| TTGAAGGAAGAAATGTTCCT+AGG | 0.558090 | 1_1:+70286920 | Msa0040200:CDS |
| GATGGCCTAGGGAAAGCAAA+AGG | 0.561679 | 1_1:-70286748 | None:intergenic |
| TCTAAATCACAGAAATGCCA+TGG | 0.567771 | 1_1:+70285900 | Msa0040200:CDS |
| GGTACTTGAGAGAAAGAGAT+GGG | 0.568012 | 1_1:+70285027 | Msa0040200:exon |
| AAGCTAGAGCTCGTGCTCAA+AGG | 0.569984 | 1_1:+70285848 | Msa0040200:CDS |
| ACTCAGTACCTATCTCCCTC+TGG | 0.571519 | 1_1:-70287230 | None:intergenic |
| CATTTGAGAGGCAACTGAGT+CGG | 0.582840 | 1_1:+70286884 | Msa0040200:CDS |
| GTTCTGCATAAGATGGCCTA+GGG | 0.585806 | 1_1:-70286759 | None:intergenic |
| CTGTCAAGCTTAATTGACCA+TGG | 0.596255 | 1_1:-70287003 | None:intergenic |
| TCACTCAAAGACAGCGAGTG+TGG | 0.602764 | 1_1:+70287036 | Msa0040200:CDS |
| CTCAGAACTACCAATATCCA+TGG | 0.603363 | 1_1:+70286986 | Msa0040200:CDS |
| AGGTACTTGAGAGAAAGAGA+TGG | 0.605693 | 1_1:+70285026 | Msa0040200:exon |
| AGGATCCGAATGGTGTCAGA+AGG | 0.606421 | 1_1:+70285868 | Msa0040200:CDS |
| AAAGGCCAGATTCATTTGAG+AGG | 0.608884 | 1_1:+70286872 | Msa0040200:CDS |
| CTTCTATTTAGTGTTGCACA+AGG | 0.615759 | 1_1:-70287258 | None:intergenic |
| CTTGGTGAGAAAACAAGCAA+AGG | 0.620679 | 1_1:+70285789 | Msa0040200:CDS |
| CACAAAGTGCACCAAAACAA+AGG | 0.621093 | 1_1:+70286854 | Msa0040200:CDS |
| TACTCACATCATATGCAACA+AGG | 0.625138 | 1_1:-70287101 | None:intergenic |
| TCTGGATTACATTTGTGTGA+AGG | 0.626541 | 1_1:+70287457 | Msa0040200:three_prime_UTR |
| ACTCACATCATATGCAACAA+GGG | 0.631010 | 1_1:-70287100 | None:intergenic |
| AAGTTGCAGGCACTGATAAG+GGG | 0.634301 | 1_1:+70285763 | Msa0040200:CDS |
| TTGATATTCAGAATGAGCAA+AGG | 0.635567 | 1_1:+70285301 | Msa0040200:CDS |
| GGCTAATACAGAATCATCAA+GGG | 0.638606 | 1_1:+70286819 | Msa0040200:CDS |
| GGAAGACAACATCAAGATCG+TGG | 0.662356 | 1_1:+70286462 | Msa0040200:CDS |
| TCGTGCTCAAAGGATCCGAA+TGG | 0.669902 | 1_1:+70285858 | Msa0040200:CDS |
| TACCTAGTAAACTAACAACA+TGG | 0.670118 | 1_1:-70285008 | None:intergenic |
| TGCGTATAGGAAATGGACAG+AGG | 0.674143 | 1_1:+70286436 | Msa0040200:intron |
| GAAATGTTCCTAGGCCAGTG+AGG | 0.680955 | 1_1:+70286929 | Msa0040200:CDS |
| AATTAAGCTTGACAGATCGG+CGG | 0.696688 | 1_1:+70287011 | Msa0040200:CDS |
| AAGGAATCATGCCATTGCTG+TGG | 0.703010 | 1_1:+70285320 | Msa0040200:CDS |
| TTGAGTCCAAAAGCATACAG+TGG | 0.712237 | 1_1:+70286643 | Msa0040200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAGATAATTATTAATT+AGG | - | chr1_1:70285973-70285992 | None:intergenic | 10.0% |
| !! | TTCAACAATCAAATTAAAAT+TGG | - | chr1_1:70285998-70286017 | None:intergenic | 15.0% |
| !! | TCAAGAAGAAAAATATATAT+CGG | + | chr1_1:70287167-70287186 | Msa0040200:intron | 15.0% |
| !! | TGATATATATCTAATTAACT+TGG | - | chr1_1:70287521-70287540 | None:intergenic | 15.0% |
| !! | ATTGATGTCATAAACATAAT+TGG | + | chr1_1:70286027-70286046 | Msa0040200:intron | 20.0% |
| !! | CTACAAAATTTATGATCAAA+TGG | - | chr1_1:70286099-70286118 | None:intergenic | 20.0% |
| !!! | CATTTGATCATAAATTTTGT+AGG | + | chr1_1:70286097-70286116 | Msa0040200:intron | 20.0% |
| !!! | TAATTTTGCATTAGTTAAAG+TGG | + | chr1_1:70286138-70286157 | Msa0040200:intron | 20.0% |
| !!! | GATACACTAAACAATTTTAT+AGG | - | chr1_1:70286364-70286383 | None:intergenic | 20.0% |
| !! | GAAAATAGATATTCCATAAA+TGG | + | chr1_1:70286562-70286581 | Msa0040200:CDS | 20.0% |
| !!! | AACAGAACTTATATTTTCTT+TGG | - | chr1_1:70287359-70287378 | None:intergenic | 20.0% |
| !! | TTTGATGTAACAGTTAGTTT+AGG | + | chr1_1:70284851-70284870 | Msa0040200:five_prime_UTR | 25.0% |
| !!! | GATTTTATTTGTAGATCTCT+TGG | - | chr1_1:70284954-70284973 | None:intergenic | 25.0% |
| !! | TCATTTTGCAACTTTCTTAT+AGG | + | chr1_1:70284972-70284991 | Msa0040200:five_prime_UTR | 25.0% |
| !!! | ACAAACCAGAATTTTTCAAA+TGG | + | chr1_1:70285123-70285142 | Msa0040200:CDS | 25.0% |
| ! | TGTCATTGAAGAAGTAATTT+CGG | - | chr1_1:70285265-70285284 | None:intergenic | 25.0% |
| !!! | CCTTTAAAATTTTAAGGACT+CGG | - | chr1_1:70285514-70285533 | None:intergenic | 25.0% |
| !!! | GTCCTTAAAATTTTAAAGGT+CGG | + | chr1_1:70285515-70285534 | Msa0040200:intron | 25.0% |
| ! | TTCTAGTCATGATTAAAATG+TGG | + | chr1_1:70286408-70286427 | Msa0040200:intron | 25.0% |
| !!! | ATTTTCTTTGGAACTCTAAA+AGG | - | chr1_1:70287347-70287366 | None:intergenic | 25.0% |
| !!! | TTTTTTATGATATAGAGTGC+TGG | + | chr1_1:70287377-70287396 | Msa0040200:three_prime_UTR | 25.0% |
| !!! | TTTTTATGATATAGAGTGCT+GGG | + | chr1_1:70287378-70287397 | Msa0040200:three_prime_UTR | 25.0% |
| ! | AAGTTGCTTTCAGTACTATA+TGG | - | chr1_1:70284917-70284936 | None:intergenic | 30.0% |
| ! | ATCCATGTTGTTAGTTTACT+AGG | + | chr1_1:70285006-70285025 | Msa0040200:five_prime_UTR | 30.0% |
| TACCTAGTAAACTAACAACA+TGG | - | chr1_1:70285011-70285030 | None:intergenic | 30.0% | |
| AGATGGGAAAAAAAGGTAAA+TGG | + | chr1_1:70285043-70285062 | Msa0040200:exon | 30.0% | |
| GAAAGACAAAGAAAAAGAGA+AGG | + | chr1_1:70285089-70285108 | Msa0040200:CDS | 30.0% | |
| CTGTTCCATTTGAAAAATTC+TGG | - | chr1_1:70285131-70285150 | None:intergenic | 30.0% | |
| !!! | ATGGAGTTTTAGAAGATCAT+CGG | + | chr1_1:70285200-70285219 | Msa0040200:CDS | 30.0% |
| TTCGGAATTATTCAATTCCT+TGG | - | chr1_1:70285247-70285266 | None:intergenic | 30.0% | |
| TTGATATTCAGAATGAGCAA+AGG | + | chr1_1:70285301-70285320 | Msa0040200:CDS | 30.0% | |
| ! | CCGAGTCCTTAAAATTTTAA+AGG | + | chr1_1:70285511-70285530 | Msa0040200:intron | 30.0% |
| !!! | GACCGACCTTTAAAATTTTA+AGG | - | chr1_1:70285520-70285539 | None:intergenic | 30.0% |
| TCTGACATTGTTCACTTTAA+GGG | - | chr1_1:70285580-70285599 | None:intergenic | 30.0% | |
| ATCTGACATTGTTCACTTTA+AGG | - | chr1_1:70285581-70285600 | None:intergenic | 30.0% | |
| TTAAATCGTGGCGATAAATT+TGG | - | chr1_1:70285619-70285638 | None:intergenic | 30.0% | |
| AAATTTATCGCCACGATTTA+AGG | + | chr1_1:70285618-70285637 | Msa0040200:intron | 30.0% | |
| AATTTATCGCCACGATTTAA+GGG | + | chr1_1:70285619-70285638 | Msa0040200:intron | 30.0% | |
| GTCCTTGAAATTGTATAGTA+GGG | - | chr1_1:70285671-70285690 | None:intergenic | 30.0% | |
| AGTCCTTGAAATTGTATAGT+AGG | - | chr1_1:70285672-70285691 | None:intergenic | 30.0% | |
| GCATTTCTGTGATTTAGATT+AGG | - | chr1_1:70285898-70285917 | None:intergenic | 30.0% | |
| ! | CACGTTTTCAATATAAAGTG+TGG | - | chr1_1:70286194-70286213 | None:intergenic | 30.0% |
| TTGTTTAGTGTATCCAAATG+AGG | + | chr1_1:70286370-70286389 | Msa0040200:intron | 30.0% | |
| ! | ACTTCATTTTGTTCCTCATT+TGG | - | chr1_1:70286386-70286405 | None:intergenic | 30.0% |
| ! | ATGGATTTTTGCGAATCAAA+AGG | + | chr1_1:70286487-70286506 | Msa0040200:CDS | 30.0% |
| ! | TTTTGTGTAGGAACCATTTA+TGG | - | chr1_1:70286578-70286597 | None:intergenic | 30.0% |
| ! | TTTTGGACTCAATTCTGTTA+AGG | - | chr1_1:70286635-70286654 | None:intergenic | 30.0% |
| TACTGAAACAATCCTCAAAA+TGG | - | chr1_1:70286669-70286688 | None:intergenic | 30.0% | |
| GATATAGCAGAATAACATTG+AGG | - | chr1_1:70286706-70286725 | None:intergenic | 30.0% | |
| TATTCATTGTTTGTACTGTC+TGG | + | chr1_1:70287439-70287458 | Msa0040200:three_prime_UTR | 30.0% | |
| TTTGTGTGAAGGATTTGTAA+TGG | + | chr1_1:70287468-70287487 | Msa0040200:three_prime_UTR | 30.0% | |
| TCAGTACTATATGGTTGTGA+TGG | - | chr1_1:70284908-70284927 | None:intergenic | 35.0% | |
| GAGAAAGAGATGGGAAAAAA+AGG | + | chr1_1:70285036-70285055 | Msa0040200:exon | 35.0% | |
| !! | TGGCTTAAAAACTTGTTGAC+AGG | + | chr1_1:70285063-70285082 | Msa0040200:CDS | 35.0% |
| !! | GGCTTAAAAACTTGTTGACA+GGG | + | chr1_1:70285064-70285083 | Msa0040200:CDS | 35.0% |
| CATTTGAACCAGAAGTTAAC+CGG | - | chr1_1:70285410-70285429 | None:intergenic | 35.0% | |
| GCAAATTTGAAGGACTAAAC+TGG | - | chr1_1:70285649-70285668 | None:intergenic | 35.0% | |
| GTATAGTAGGGCAAATTTGA+AGG | - | chr1_1:70285659-70285678 | None:intergenic | 35.0% | |
| TGCCCTACTATACAATTTCA+AGG | + | chr1_1:70285666-70285685 | Msa0040200:intron | 35.0% | |
| TTTGTGAATGTTTGTGTGAC+AGG | + | chr1_1:70285705-70285724 | Msa0040200:intron | 35.0% | |
| TCTAAATCACAGAAATGCCA+TGG | + | chr1_1:70285900-70285919 | Msa0040200:CDS | 35.0% | |
| ! | CAATATAAAGTGTGGTGCTA+TGG | - | chr1_1:70286186-70286205 | None:intergenic | 35.0% |
| TGTAAGCATAGTATCATGTC+TGG | + | chr1_1:70286274-70286293 | Msa0040200:intron | 35.0% | |
| ! | TGACCTATGAAGCACTAAAA+CGG | - | chr1_1:70286303-70286322 | None:intergenic | 35.0% |
| !!! | AAATGTGGTTTTGTGCGTAT+AGG | + | chr1_1:70286423-70286442 | Msa0040200:intron | 35.0% |
| ! | GCAGTTTTCTTCTTTTGTGT+AGG | - | chr1_1:70286590-70286609 | None:intergenic | 35.0% |
| GACATTTGTTCTGCATAAGA+TGG | - | chr1_1:70286769-70286788 | None:intergenic | 35.0% | |
| CCATGTAACTTGGATACAAA+GGG | - | chr1_1:70286801-70286820 | None:intergenic | 35.0% | |
| TCTGTATTAGCCATGTAACT+TGG | - | chr1_1:70286811-70286830 | None:intergenic | 35.0% | |
| TGGCTAATACAGAATCATCA+AGG | + | chr1_1:70286818-70286837 | Msa0040200:CDS | 35.0% | |
| GGCTAATACAGAATCATCAA+GGG | + | chr1_1:70286819-70286838 | Msa0040200:CDS | 35.0% | |
| !! | AATGAATCTGGCCTTTGTTT+TGG | - | chr1_1:70286868-70286887 | None:intergenic | 35.0% |
| TTGAAGGAAGAAATGTTCCT+AGG | + | chr1_1:70286920-70286939 | Msa0040200:CDS | 35.0% | |
| CAAAGATCATCTTCACAAGT+AGG | + | chr1_1:70286955-70286974 | Msa0040200:CDS | 35.0% | |
| GCTTAATTGACCATGGATAT+TGG | - | chr1_1:70286999-70287018 | None:intergenic | 35.0% | |
| GTCAATTAAGCTTGACAGAT+CGG | + | chr1_1:70287008-70287027 | Msa0040200:CDS | 35.0% | |
| ACTCACATCATATGCAACAA+GGG | - | chr1_1:70287103-70287122 | None:intergenic | 35.0% | |
| TACTCACATCATATGCAACA+AGG | - | chr1_1:70287104-70287123 | None:intergenic | 35.0% | |
| CTTCTATTTAGTGTTGCACA+AGG | - | chr1_1:70287261-70287280 | None:intergenic | 35.0% | |
| ! | CTCAATGCTTACGTTTTTGT+TGG | - | chr1_1:70287297-70287316 | None:intergenic | 35.0% |
| ! | CAACAAAAACGTAAGCATTG+AGG | + | chr1_1:70287295-70287314 | Msa0040200:three_prime_UTR | 35.0% |
| !!! | ACGTAAGCATTGAGGTTTTA+AGG | + | chr1_1:70287303-70287322 | Msa0040200:three_prime_UTR | 35.0% |
| TCTGGATTACATTTGTGTGA+AGG | + | chr1_1:70287457-70287476 | Msa0040200:three_prime_UTR | 35.0% | |
| AGGTACTTGAGAGAAAGAGA+TGG | + | chr1_1:70285026-70285045 | Msa0040200:exon | 40.0% | |
| GGTACTTGAGAGAAAGAGAT+GGG | + | chr1_1:70285027-70285046 | Msa0040200:exon | 40.0% | |
| GTTGTTGAAACAGGAGTAGT+TGG | - | chr1_1:70285159-70285178 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTGTTGTTGAAAC+AGG | - | chr1_1:70285168-70285187 | None:intergenic | 40.0% |
| ! | CCATCTCTTCTTCTCTTTTG+AGG | - | chr1_1:70285184-70285203 | None:intergenic | 40.0% |
| CCTCAAAAGAGAAGAAGAGA+TGG | + | chr1_1:70285181-70285200 | Msa0040200:CDS | 40.0% | |
| TTCAATTCCTTGGAAGCTGT+CGG | - | chr1_1:70285237-70285256 | None:intergenic | 40.0% | |
| !! | ATTGCGTGCTTTAAGAGGAT+TGG | + | chr1_1:70285738-70285757 | Msa0040200:CDS | 40.0% |
| CTTGGTGAGAAAACAAGCAA+AGG | + | chr1_1:70285789-70285808 | Msa0040200:CDS | 40.0% | |
| !! | CCTGAACAAGTCATTTTCCA+TGG | - | chr1_1:70285920-70285939 | None:intergenic | 40.0% |
| !! | CCATGGAAAATGACTTGTTC+AGG | + | chr1_1:70285917-70285936 | Msa0040200:CDS | 40.0% |
| CTATGCTTACACATACACAC+TGG | - | chr1_1:70286265-70286284 | None:intergenic | 40.0% | |
| !! | TGTCCGTTTTAGTGCTTCAT+AGG | + | chr1_1:70286297-70286316 | Msa0040200:intron | 40.0% |
| TTTAGTGCTTCATAGGTCAC+TGG | + | chr1_1:70286304-70286323 | Msa0040200:intron | 40.0% | |
| !! | GGTTTTGTGCGTATAGGAAA+TGG | + | chr1_1:70286429-70286448 | Msa0040200:intron | 40.0% |
| CTCAATTCTGTTAAGGCTGA+TGG | - | chr1_1:70286628-70286647 | None:intergenic | 40.0% | |
| ! | TTGAGTCCAAAAGCATACAG+TGG | + | chr1_1:70286643-70286662 | Msa0040200:CDS | 40.0% |
| ! | AAATGGCCACTGTATGCTTT+TGG | - | chr1_1:70286652-70286671 | None:intergenic | 40.0% |
| ! | ATCATCCTTTTGCTTTCCCT+AGG | + | chr1_1:70286743-70286762 | Msa0040200:CDS | 40.0% |
| TGGATACAAAGGGTAGTCAT+AGG | - | chr1_1:70286791-70286810 | None:intergenic | 40.0% | |
| CCCTTTGTATCCAAGTTACA+TGG | + | chr1_1:70286798-70286817 | Msa0040200:CDS | 40.0% | |
| GCCATGTAACTTGGATACAA+AGG | - | chr1_1:70286802-70286821 | None:intergenic | 40.0% | |
| CACAAAGTGCACCAAAACAA+AGG | + | chr1_1:70286854-70286873 | Msa0040200:CDS | 40.0% | |
| AAAGGCCAGATTCATTTGAG+AGG | + | chr1_1:70286872-70286891 | Msa0040200:CDS | 40.0% | |
| AGTTGCCTCTCAAATGAATC+TGG | - | chr1_1:70286880-70286899 | None:intergenic | 40.0% | |
| CTCAGAACTACCAATATCCA+TGG | + | chr1_1:70286986-70287005 | Msa0040200:CDS | 40.0% | |
| CTGTCAAGCTTAATTGACCA+TGG | - | chr1_1:70287006-70287025 | None:intergenic | 40.0% | |
| AATTAAGCTTGACAGATCGG+CGG | + | chr1_1:70287011-70287030 | Msa0040200:CDS | 40.0% | |
| !!! | ATTGTTTTGATTGCAGCCAG+AGG | + | chr1_1:70287214-70287233 | Msa0040200:intron | 40.0% |
| !!! | TTGTTTTGATTGCAGCCAGA+GGG | + | chr1_1:70287215-70287234 | Msa0040200:intron | 40.0% |
| AAGGAATCATGCCATTGCTG+TGG | + | chr1_1:70285320-70285339 | Msa0040200:CDS | 45.0% | |
| ATGCGTCTTTCGATCTCACT+TGG | + | chr1_1:70285473-70285492 | Msa0040200:CDS | 45.0% | |
| TATCGCCACGATTTAAGGGT+CGG | + | chr1_1:70285623-70285642 | Msa0040200:intron | 45.0% | |
| GTTTGTGTGACAGGCAAGAA+AGG | + | chr1_1:70285714-70285733 | Msa0040200:intron | 45.0% | |
| !! | AAGGCATTGCGTGCTTTAAG+AGG | + | chr1_1:70285733-70285752 | Msa0040200:CDS | 45.0% |
| ! | AAGAGGATTGGTGAAGTTGC+AGG | + | chr1_1:70285750-70285769 | Msa0040200:CDS | 45.0% |
| !! | TGAAGTTGCAGGCACTGATA+AGG | + | chr1_1:70285761-70285780 | Msa0040200:CDS | 45.0% |
| !! | GAAGTTGCAGGCACTGATAA+GGG | + | chr1_1:70285762-70285781 | Msa0040200:CDS | 45.0% |
| !! | AAGTTGCAGGCACTGATAAG+GGG | + | chr1_1:70285763-70285782 | Msa0040200:CDS | 45.0% |
| ACTCAGATGTATGCAGGCTT+TGG | + | chr1_1:70285816-70285835 | Msa0040200:CDS | 45.0% | |
| GCTTTCCTTCTGACACCATT+CGG | - | chr1_1:70285876-70285895 | None:intergenic | 45.0% | |
| !! | ACTGTAACTTGCTGGATGCT+CGG | - | chr1_1:70286218-70286237 | None:intergenic | 45.0% |
| ! | TCTGAGACACTGTAACTTGC+TGG | - | chr1_1:70286226-70286245 | None:intergenic | 45.0% |
| TGCGTATAGGAAATGGACAG+AGG | + | chr1_1:70286436-70286455 | Msa0040200:intron | 45.0% | |
| ATAGGAAATGGACAGAGGCT+TGG | + | chr1_1:70286441-70286460 | Msa0040200:intron | 45.0% | |
| GGAAGACAACATCAAGATCG+TGG | + | chr1_1:70286462-70286481 | Msa0040200:CDS | 45.0% | |
| CAACATCAAGATCGTGGAGA+TGG | + | chr1_1:70286468-70286487 | Msa0040200:CDS | 45.0% | |
| !! | AGCATACAGTGGCCATTTTG+AGG | + | chr1_1:70286654-70286673 | Msa0040200:CDS | 45.0% |
| GTTCTGCATAAGATGGCCTA+GGG | - | chr1_1:70286762-70286781 | None:intergenic | 45.0% | |
| TGTTCTGCATAAGATGGCCT+AGG | - | chr1_1:70286763-70286782 | None:intergenic | 45.0% | |
| CATTTGAGAGGCAACTGAGT+CGG | + | chr1_1:70286884-70286903 | Msa0040200:CDS | 45.0% | |
| ACTGAGTCGGCGAAGAATTT+CGG | + | chr1_1:70286897-70286916 | Msa0040200:CDS | 45.0% | |
| GATGATCTTTGCATCCTCAC+TGG | - | chr1_1:70286946-70286965 | None:intergenic | 45.0% | |
| GCTGTGATCCGGTTAACTTC+TGG | + | chr1_1:70285399-70285418 | Msa0040200:CDS | 50.0% | |
| GGCAACACTCAGATGTATGC+AGG | + | chr1_1:70285810-70285829 | Msa0040200:CDS | 50.0% | |
| AAGCTAGAGCTCGTGCTCAA+AGG | + | chr1_1:70285848-70285867 | Msa0040200:CDS | 50.0% | |
| TCGTGCTCAAAGGATCCGAA+TGG | + | chr1_1:70285858-70285877 | Msa0040200:CDS | 50.0% | |
| ! | AGGATCCGAATGGTGTCAGA+AGG | + | chr1_1:70285868-70285887 | Msa0040200:CDS | 50.0% |
| TCTGTTAAGGCTGATGGAGC+TGG | - | chr1_1:70286622-70286641 | None:intergenic | 50.0% | |
| GATGGCCTAGGGAAAGCAAA+AGG | - | chr1_1:70286751-70286770 | None:intergenic | 50.0% | |
| CGGCGAAGAATTTCGGTTGA+AGG | + | chr1_1:70286904-70286923 | Msa0040200:CDS | 50.0% | |
| GAAATGTTCCTAGGCCAGTG+AGG | + | chr1_1:70286929-70286948 | Msa0040200:CDS | 50.0% | |
| TCACTCAAAGACAGCGAGTG+TGG | + | chr1_1:70287036-70287055 | Msa0040200:CDS | 50.0% | |
| ACTCAGTACCTATCTCCCTC+TGG | - | chr1_1:70287233-70287252 | None:intergenic | 50.0% | |
| AGCTACACCGACAGCTTCCA+AGG | + | chr1_1:70285227-70285246 | Msa0040200:CDS | 55.0% | |
| CATTGCTGTGGCTGCTGCTA+CGG | + | chr1_1:70285332-70285351 | Msa0040200:CDS | 55.0% | |
| AAGCTGCAGCTGCTGTGATC+CGG | + | chr1_1:70285388-70285407 | Msa0040200:CDS | 55.0% | |
| ACTGGCCGACCCTTAAATCG+TGG | - | chr1_1:70285631-70285650 | None:intergenic | 55.0% | |
| !! | GGCACTGATAAGGGGTCACT+TGG | + | chr1_1:70285771-70285790 | Msa0040200:CDS | 55.0% |
| !! | ACACTGGTGTCGTGTCGTGT+CGG | - | chr1_1:70286249-70286268 | None:intergenic | 55.0% |
| ! | CTTTGCATCCTCACTGGCCT+AGG | - | chr1_1:70286940-70286959 | None:intergenic | 55.0% |
| GATTGCAGCCAGAGGGAGAT+AGG | + | chr1_1:70287222-70287241 | Msa0040200:intron | 55.0% | |
| CGTAGCAGCAGCCACAGCAA+TGG | - | chr1_1:70285334-70285353 | None:intergenic | 60.0% | |
| TGTGGCTGCTGCTACGGCTG+CGG | + | chr1_1:70285338-70285357 | Msa0040200:CDS | 65.0% | |
| TGCGGCAGCTGATGCAGCAG+TGG | + | chr1_1:70285356-70285375 | Msa0040200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70284843 | 70287547 | 70284843 | ID=Msa0040200;Name=Msa0040200 |
| chr1_1 | mRNA | 70284843 | 70287547 | 70284843 | ID=Msa0040200-mRNA-1;Parent=Msa0040200;Name=Msa0040200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=202|1|1|1|1|1|4|297|455 |
| chr1_1 | exon | 70284843 | 70285494 | 70284843 | ID=Msa0040200-mRNA-1:exon:23088;Parent=Msa0040200-mRNA-1 |
| chr1_1 | exon | 70285727 | 70285951 | 70285727 | ID=Msa0040200-mRNA-1:exon:23089;Parent=Msa0040200-mRNA-1 |
| chr1_1 | exon | 70286445 | 70287116 | 70286445 | ID=Msa0040200-mRNA-1:exon:23090;Parent=Msa0040200-mRNA-1 |
| chr1_1 | exon | 70287230 | 70287547 | 70287230 | ID=Msa0040200-mRNA-1:exon:23091;Parent=Msa0040200-mRNA-1 |
| chr1_1 | five_prime_UTR | 70284843 | 70285044 | 70284843 | ID=Msa0040200-mRNA-1:five_prime_utr;Parent=Msa0040200-mRNA-1 |
| chr1_1 | CDS | 70285045 | 70285494 | 70285045 | ID=Msa0040200-mRNA-1:cds;Parent=Msa0040200-mRNA-1 |
| chr1_1 | CDS | 70285727 | 70285951 | 70285727 | ID=Msa0040200-mRNA-1:cds;Parent=Msa0040200-mRNA-1 |
| chr1_1 | CDS | 70286445 | 70287116 | 70286445 | ID=Msa0040200-mRNA-1:cds;Parent=Msa0040200-mRNA-1 |
| chr1_1 | CDS | 70287230 | 70287250 | 70287230 | ID=Msa0040200-mRNA-1:cds;Parent=Msa0040200-mRNA-1 |
| chr1_1 | three_prime_UTR | 70287251 | 70287547 | 70287251 | ID=Msa0040200-mRNA-1:three_prime_utr;Parent=Msa0040200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
