Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475960 | ADD09607.1 | 80.657 | 274 | 41 | 5 | 1 | 262 | 1 | 274 | 1.53e-134 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475960 | sp|Q9LQZ7|BBX21_ARATH | 51.000 | 200 | 85 | 4 | 1 | 187 | 1 | 200 | 2.70e-57 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475960 | D3YBF6 | 80.657 | 274 | 41 | 5 | 1 | 262 | 1 | 274 | 7.32e-135 | 390 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0475960 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0386930 | Msa0475960 | 0.883232 | 5.340496e-71 | -8.615850e-47 |
| Msa0475960 | Msa0523850 | 0.924804 | 4.316233e-90 | -8.615850e-47 |
| Msa0475960 | Msa1438450 | 0.800588 | 1.343513e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475960 | MtrunA17_Chr3g0145061 | 95.263 | 190 | 8 | 1 | 1 | 189 | 1 | 190 | 9.58e-133 | 374 |
| Msa0475960 | MtrunA17_Chr4g0035651 | 59.788 | 189 | 69 | 3 | 1 | 189 | 1 | 182 | 1.46e-71 | 219 |
| Msa0475960 | MtrunA17_Chr3g0142221 | 52.432 | 185 | 45 | 3 | 1 | 184 | 1 | 143 | 1.63e-59 | 188 |
| Msa0475960 | MtrunA17_Chr1g0155811 | 48.515 | 202 | 91 | 4 | 1 | 199 | 1 | 192 | 6.78e-54 | 175 |
| Msa0475960 | MtrunA17_Chr2g0314671 | 55.738 | 122 | 53 | 1 | 1 | 122 | 1 | 121 | 5.50e-40 | 140 |
| Msa0475960 | MtrunA17_Chr4g0033641 | 42.138 | 159 | 88 | 3 | 1 | 158 | 1 | 156 | 6.23e-35 | 125 |
| Msa0475960 | MtrunA17_Chr2g0329511 | 52.294 | 109 | 51 | 1 | 1 | 109 | 1 | 108 | 1.97e-33 | 121 |
| Msa0475960 | MtrunA17_Chr5g0405151 | 37.594 | 133 | 73 | 3 | 1 | 127 | 1 | 129 | 2.03e-23 | 94.0 |
| Msa0475960 | MtrunA17_Chr1g0150471 | 39.048 | 105 | 54 | 1 | 5 | 109 | 6 | 100 | 1.15e-17 | 80.9 |
| Msa0475960 | MtrunA17_Chr3g0136701 | 37.113 | 97 | 51 | 1 | 5 | 101 | 6 | 92 | 7.73e-16 | 75.5 |
| Msa0475960 | MtrunA17_Chr4g0072871 | 39.785 | 93 | 46 | 1 | 5 | 97 | 22 | 104 | 1.05e-15 | 75.9 |
| Msa0475960 | MtrunA17_Chr7g0220721 | 36.559 | 93 | 49 | 1 | 5 | 97 | 26 | 108 | 1.79e-13 | 69.7 |
| Msa0475960 | MtrunA17_Chr5g0429341 | 35.052 | 97 | 53 | 2 | 1 | 97 | 1 | 87 | 3.84e-13 | 68.6 |
| Msa0475960 | MtrunA17_Chr3g0120711 | 30.769 | 182 | 96 | 6 | 1 | 167 | 1 | 167 | 8.10e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475960 | AT1G75540.1 | 51.000 | 200 | 85 | 4 | 1 | 187 | 1 | 200 | 2.75e-58 | 189 |
| Msa0475960 | AT4G39070.1 | 55.000 | 200 | 73 | 5 | 1 | 183 | 1 | 200 | 2.42e-56 | 181 |
| Msa0475960 | AT1G06040.2 | 52.593 | 135 | 62 | 2 | 1 | 135 | 1 | 133 | 2.66e-40 | 137 |
| Msa0475960 | AT1G06040.1 | 52.593 | 135 | 62 | 2 | 1 | 135 | 1 | 133 | 4.63e-39 | 137 |
| Msa0475960 | AT1G78600.1 | 51.163 | 129 | 59 | 2 | 1 | 129 | 1 | 125 | 5.43e-39 | 138 |
| Msa0475960 | AT1G78600.2 | 51.163 | 129 | 59 | 2 | 1 | 129 | 1 | 125 | 9.42e-39 | 137 |
| Msa0475960 | AT4G10240.1 | 54.688 | 128 | 48 | 3 | 1 | 122 | 1 | 124 | 1.04e-37 | 130 |
| Msa0475960 | AT2G31380.1 | 53.211 | 109 | 50 | 1 | 1 | 109 | 1 | 108 | 7.67e-35 | 125 |
| Msa0475960 | AT4G38960.1 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 2.97e-23 | 93.6 |
| Msa0475960 | AT4G38960.6 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 2.97e-23 | 93.6 |
| Msa0475960 | AT2G21320.1 | 44.000 | 100 | 52 | 2 | 1 | 100 | 1 | 96 | 3.23e-22 | 90.9 |
| Msa0475960 | AT2G24790.2 | 39.785 | 93 | 46 | 1 | 5 | 97 | 8 | 90 | 5.27e-17 | 77.8 |
| Msa0475960 | AT2G24790.1 | 38.144 | 97 | 50 | 1 | 5 | 101 | 8 | 94 | 1.62e-16 | 77.8 |
| Msa0475960 | AT5G24930.1 | 36.082 | 97 | 52 | 1 | 5 | 101 | 6 | 92 | 1.22e-15 | 76.3 |
| Msa0475960 | AT4G38960.3 | 28.750 | 160 | 67 | 3 | 1 | 117 | 1 | 156 | 2.29e-15 | 73.6 |
| Msa0475960 | AT5G15850.1 | 32.520 | 123 | 72 | 2 | 5 | 126 | 12 | 124 | 2.31e-14 | 72.4 |
| Msa0475960 | AT3G02380.1 | 34.286 | 105 | 57 | 2 | 5 | 109 | 16 | 108 | 2.11e-13 | 69.3 |
| Msa0475960 | AT2G47890.2 | 35.593 | 118 | 55 | 3 | 5 | 111 | 13 | 120 | 1.80e-12 | 65.9 |
| Msa0475960 | AT2G47890.3 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 2.43e-12 | 66.2 |
| Msa0475960 | AT2G47890.1 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 2.90e-12 | 66.2 |
| Msa0475960 | AT1G28050.1 | 34.653 | 101 | 56 | 1 | 2 | 102 | 6 | 96 | 3.59e-12 | 66.2 |
| Msa0475960 | AT5G15840.1 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 4.59e-12 | 65.9 |
| Msa0475960 | AT2G33500.2 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 6.25e-12 | 65.5 |
| Msa0475960 | AT2G33500.1 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 6.68e-12 | 65.5 |
| Msa0475960 | AT5G15840.2 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 7.01e-12 | 64.3 |
Find 47 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATGGATGTACAGTTTC+AGG | 0.215995 | 3_3:+79682697 | Msa0475960:CDS |
| TTTGATCTAGAGTGGTTTCT+TGG | 0.257986 | 3_3:-79681418 | None:intergenic |
| ACTTCAAAATGGAAAGATTA+TGG | 0.271971 | 3_3:+79682682 | Msa0475960:CDS |
| GAAGCTTTCAAGCAATTCTT+TGG | 0.294858 | 3_3:+79681360 | Msa0475960:CDS |
| GATGCTTCTTTCCCACCTAA+TGG | 0.309132 | 3_3:+79681598 | Msa0475960:CDS |
| CAAAAGTGAACACTTCAAAA+TGG | 0.317889 | 3_3:+79682671 | Msa0475960:CDS |
| ATAGAATCGCTCTATCTTCT+TGG | 0.325288 | 3_3:-79681261 | None:intergenic |
| TCTTGGTTCAGAGCCAATAC+TGG | 0.407926 | 3_3:-79681401 | None:intergenic |
| GCAGAAGCAGAATCATTATT+CGG | 0.420688 | 3_3:+79682538 | Msa0475960:intron |
| ATCACAAAGAGGGTAGTCTT+TGG | 0.421009 | 3_3:-79681042 | None:intergenic |
| AACCAGGTATTGTTTCAATC+AGG | 0.422845 | 3_3:-79681555 | None:intergenic |
| ACCACTGAGCTAATATTAGA+AGG | 0.428353 | 3_3:-79682631 | None:intergenic |
| AACATACACAGAAACATAAC+AGG | 0.440782 | 3_3:+79681320 | Msa0475960:CDS |
| CATAACAGGTTTCTTCTCTC+TGG | 0.447881 | 3_3:+79681334 | Msa0475960:CDS |
| GTGTATGTTCATTTGCTCCA+TGG | 0.455691 | 3_3:-79681306 | None:intergenic |
| TTATTCGGCACCTCTAGCTC+AGG | 0.475060 | 3_3:+79682579 | Msa0475960:CDS |
| CATTTGCTCCATGGATTGGA+AGG | 0.479724 | 3_3:-79681297 | None:intergenic |
| ATACTGGTGGATGATGAATC+TGG | 0.490828 | 3_3:-79681385 | None:intergenic |
| GATTCATCATCCACCAGTAT+TGG | 0.497576 | 3_3:+79681388 | Msa0475960:CDS |
| TGTTCATTTGCTCCATGGAT+TGG | 0.505507 | 3_3:-79681301 | None:intergenic |
| GAATGTGACCTTCCAATCCA+TGG | 0.511555 | 3_3:+79681289 | Msa0475960:CDS |
| GAGGGTAGTCTTTGGAGTTG+AGG | 0.523182 | 3_3:-79681034 | None:intergenic |
| GATGAAGCTGCTCTTTGCCA+TGG | 0.528890 | 3_3:+79680945 | Msa0475960:CDS |
| GACAACATGGCTAGTGACAC+TGG | 0.532967 | 3_3:+79681502 | Msa0475960:CDS |
| TCTAATATTAGCTCAGTGGT+TGG | 0.556823 | 3_3:+79682634 | Msa0475960:CDS |
| AAATGCAAGTTCTTCTTGCA+TGG | 0.564285 | 3_3:+79681474 | Msa0475960:CDS |
| GCTGATTCAGCCTGAGCTAG+AGG | 0.566827 | 3_3:-79682589 | None:intergenic |
| GAGCTAATATTAGAAGGAGT+AGG | 0.569687 | 3_3:-79682625 | None:intergenic |
| CTTTCTCACACACATCACAT+TGG | 0.572968 | 3_3:-79680896 | None:intergenic |
| TGGTTCAGAGCCAATACTGG+TGG | 0.580417 | 3_3:-79681398 | None:intergenic |
| TGGTTGCAAGCTTGTTAGCA+CGG | 0.587933 | 3_3:-79680986 | None:intergenic |
| TTCATCTGAAGGACAGAACA+TGG | 0.588007 | 3_3:-79680928 | None:intergenic |
| AAGCTTGTTAGCACGGTGGA+TGG | 0.588310 | 3_3:-79680979 | None:intergenic |
| GGTAGTCTTTGGAGTTGAGG+TGG | 0.590439 | 3_3:-79681031 | None:intergenic |
| ACCTTACAGAAACCATTAGG+TGG | 0.591397 | 3_3:-79681610 | None:intergenic |
| CAAAGAGCAGCTTCATCTGA+AGG | 0.591587 | 3_3:-79680939 | None:intergenic |
| GGATGGTATGATCACATCCA+TGG | 0.613993 | 3_3:-79680962 | None:intergenic |
| TACTGGTGGATGATGAATCT+GGG | 0.618443 | 3_3:-79681384 | None:intergenic |
| TACCTGATTGAAACAATACC+TGG | 0.621076 | 3_3:+79681553 | Msa0475960:CDS |
| TTGCATGGCTGAAGACAACA+TGG | 0.623591 | 3_3:+79681489 | Msa0475960:CDS |
| CCTTACAGAAACCATTAGGT+GGG | 0.623605 | 3_3:-79681609 | None:intergenic |
| TCCTTCTAATATTAGCTCAG+TGG | 0.624133 | 3_3:+79682630 | Msa0475960:CDS |
| CTTGACAGATATCACAAAGA+GGG | 0.634180 | 3_3:-79681052 | None:intergenic |
| AAGTCTTCAAAACAGTAACC+AGG | 0.647020 | 3_3:-79681571 | None:intergenic |
| ACTTGACAGATATCACAAAG+AGG | 0.665459 | 3_3:-79681053 | None:intergenic |
| TTGCAAGCTTGTTAGCACGG+TGG | 0.731754 | 3_3:-79680983 | None:intergenic |
| TGATGTGTGTGAGAAAGCTG+AGG | 0.739027 | 3_3:+79680902 | Msa0475960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAGTTAATATATTTATA+AGG | - | chr3_3:79681917-79681936 | None:intergenic | 10.0% |
| !!! | TAAAAAATTCTAGTTTTTTT+TGG | + | chr3_3:79682186-79682205 | Msa0475960:intron | 10.0% |
| !!! | AAAAAATTCTAGTTTTTTTT+GGG | + | chr3_3:79682187-79682206 | Msa0475960:intron | 10.0% |
| !! | ACAAAAATTAACTTAAAAAT+AGG | + | chr3_3:79682260-79682279 | Msa0475960:intron | 10.0% |
| !! | CAAAAATTAACTTAAAAATA+GGG | + | chr3_3:79682261-79682280 | Msa0475960:intron | 10.0% |
| !! | TGAAAAATTAGTATATTTAT+AGG | + | chr3_3:79682351-79682370 | Msa0475960:intron | 10.0% |
| !! | GAAAAATTAGTATATTTATA+GGG | + | chr3_3:79682352-79682371 | Msa0475960:intron | 10.0% |
| !! | GAAAAGTTAATATATTTATA+AGG | - | chr3_3:79681917-79681936 | None:intergenic | 10.0% |
| !!! | TAAAAAATTCTAGTTTTTTT+TGG | + | chr3_3:79682186-79682205 | Msa0475960:intron | 10.0% |
| !!! | AAAAAATTCTAGTTTTTTTT+GGG | + | chr3_3:79682187-79682206 | Msa0475960:intron | 10.0% |
| !! | ACAAAAATTAACTTAAAAAT+AGG | + | chr3_3:79682260-79682279 | Msa0475960:intron | 10.0% |
| !! | CAAAAATTAACTTAAAAATA+GGG | + | chr3_3:79682261-79682280 | Msa0475960:intron | 10.0% |
| !! | TGAAAAATTAGTATATTTAT+AGG | + | chr3_3:79682351-79682370 | Msa0475960:intron | 10.0% |
| !! | GAAAAATTAGTATATTTATA+GGG | + | chr3_3:79682352-79682371 | Msa0475960:intron | 10.0% |
| !!! | AGTAGATAATTTTTTTTGAA+GGG | - | chr3_3:79681698-79681717 | None:intergenic | 15.0% |
| !!! | AAGTAGATAATTTTTTTTGA+AGG | - | chr3_3:79681699-79681718 | None:intergenic | 15.0% |
| !! | TGTTACAAAATATAAACAAA+AGG | + | chr3_3:79681738-79681757 | Msa0475960:intron | 15.0% |
| !!! | TACTTTTGTTTATATTTGTA+AGG | + | chr3_3:79681825-79681844 | Msa0475960:intron | 15.0% |
| !!! | ACTTTTGTTTATATTTGTAA+GGG | + | chr3_3:79681826-79681845 | Msa0475960:intron | 15.0% |
| !!! | ATGAATTTTTGTATTTTTGA+AGG | + | chr3_3:79682133-79682152 | Msa0475960:intron | 15.0% |
| !!! | AGTAGATAATTTTTTTTGAA+GGG | - | chr3_3:79681698-79681717 | None:intergenic | 15.0% |
| !!! | AAGTAGATAATTTTTTTTGA+AGG | - | chr3_3:79681699-79681718 | None:intergenic | 15.0% |
| !! | TGTTACAAAATATAAACAAA+AGG | + | chr3_3:79681738-79681757 | Msa0475960:intron | 15.0% |
| !!! | TACTTTTGTTTATATTTGTA+AGG | + | chr3_3:79681825-79681844 | Msa0475960:intron | 15.0% |
| !!! | ACTTTTGTTTATATTTGTAA+GGG | + | chr3_3:79681826-79681845 | Msa0475960:intron | 15.0% |
| !!! | ATGAATTTTTGTATTTTTGA+AGG | + | chr3_3:79682133-79682152 | Msa0475960:intron | 15.0% |
| !!! | ATGTGACTAATGTTTTAAAA+TGG | + | chr3_3:79681170-79681189 | Msa0475960:intron | 20.0% |
| !!! | TTGTTTATATTTTGTAACAG+AGG | - | chr3_3:79681737-79681756 | None:intergenic | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | - | chr3_3:79681803-79681822 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr3_3:79682008-79682027 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr3_3:79682009-79682028 | None:intergenic | 20.0% |
| !!! | TGGTGATTGAAAATTTTATA+GGG | + | chr3_3:79682292-79682311 | Msa0475960:intron | 20.0% |
| !! | TCTTATAATAATAACTCTTC+TGG | + | chr3_3:79682484-79682503 | Msa0475960:intron | 20.0% |
| !! | CTTATAATAATAACTCTTCT+GGG | + | chr3_3:79682485-79682504 | Msa0475960:intron | 20.0% |
| !!! | ATGTGACTAATGTTTTAAAA+TGG | + | chr3_3:79681170-79681189 | Msa0475960:intron | 20.0% |
| !!! | TTGTTTATATTTTGTAACAG+AGG | - | chr3_3:79681737-79681756 | None:intergenic | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | - | chr3_3:79681803-79681822 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr3_3:79682008-79682027 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr3_3:79682009-79682028 | None:intergenic | 20.0% |
| !!! | TGGTGATTGAAAATTTTATA+GGG | + | chr3_3:79682292-79682311 | Msa0475960:intron | 20.0% |
| !! | TCTTATAATAATAACTCTTC+TGG | + | chr3_3:79682484-79682503 | Msa0475960:intron | 20.0% |
| !! | CTTATAATAATAACTCTTCT+GGG | + | chr3_3:79682485-79682504 | Msa0475960:intron | 20.0% |
| !!! | TTTTTTTATAAAAACGGTCG+CGG | + | chr3_3:79681094-79681113 | Msa0475960:intron | 25.0% |
| !! | TTATATTTTGTAACAGAGGA+AGG | - | chr3_3:79681733-79681752 | None:intergenic | 25.0% |
| !! | AAGAGTATAGTATTATGGAA+AGG | + | chr3_3:79681852-79681871 | Msa0475960:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr3_3:79681948-79681967 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr3_3:79681949-79681968 | None:intergenic | 25.0% |
| !! | GTGGTGATTGAAAATTTTAT+AGG | + | chr3_3:79682291-79682310 | Msa0475960:intron | 25.0% |
| !! | TTCAGTACCAAGTTTTTATT+CGG | + | chr3_3:79682564-79682583 | Msa0475960:CDS | 25.0% |
| ! | ACTTCAAAATGGAAAGATTA+TGG | + | chr3_3:79682682-79682701 | Msa0475960:CDS | 25.0% |
| !!! | TTTTTTTATAAAAACGGTCG+CGG | + | chr3_3:79681094-79681113 | Msa0475960:intron | 25.0% |
| !! | TTATATTTTGTAACAGAGGA+AGG | - | chr3_3:79681733-79681752 | None:intergenic | 25.0% |
| !! | AAGAGTATAGTATTATGGAA+AGG | + | chr3_3:79681852-79681871 | Msa0475960:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr3_3:79681948-79681967 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr3_3:79681949-79681968 | None:intergenic | 25.0% |
| !! | GTGGTGATTGAAAATTTTAT+AGG | + | chr3_3:79682291-79682310 | Msa0475960:intron | 25.0% |
| !! | TTCAGTACCAAGTTTTTATT+CGG | + | chr3_3:79682564-79682583 | Msa0475960:CDS | 25.0% |
| ! | ACTTCAAAATGGAAAGATTA+TGG | + | chr3_3:79682682-79682701 | Msa0475960:CDS | 25.0% |
| ATTAAAGATCCAGATGCAAA+CGG | - | chr3_3:79681129-79681148 | None:intergenic | 30.0% | |
| AACATACACAGAAACATAAC+AGG | + | chr3_3:79681320-79681339 | Msa0475960:CDS | 30.0% | |
| ! | TTTTCATTGGAAACTGATCT+TGG | - | chr3_3:79681457-79681476 | None:intergenic | 30.0% |
| ! | AGAAGAACTTGCATTTTCAT+TGG | - | chr3_3:79681470-79681489 | None:intergenic | 30.0% |
| TAAACCTTACAGAAACCATT+AGG | - | chr3_3:79681616-79681635 | None:intergenic | 30.0% | |
| ! | GGTCTAAGAGTATAGTATTA+TGG | + | chr3_3:79681847-79681866 | Msa0475960:intron | 30.0% |
| TGAAGATGGGAAAATTTGAA+GGG | - | chr3_3:79681977-79681996 | None:intergenic | 30.0% | |
| ! | AATTTTCCCATCTTCACTTT+TGG | + | chr3_3:79681981-79682000 | Msa0475960:intron | 30.0% |
| TTAAAAATAGGGAGCAAAAG+TGG | + | chr3_3:79682272-79682291 | Msa0475960:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr3_3:79682307-79682326 | Msa0475960:intron | 30.0% | |
| TATAGGGACTAAAAGTTGAA+GGG | + | chr3_3:79682308-79682327 | Msa0475960:intron | 30.0% | |
| ! | AAGTTGAAGGGAAATTTTAG+AGG | + | chr3_3:79682320-79682339 | Msa0475960:intron | 30.0% |
| ! | AGTTGAAGGGAAATTTTAGA+GGG | + | chr3_3:79682321-79682340 | Msa0475960:intron | 30.0% |
| CAAAAGTGAACACTTCAAAA+TGG | + | chr3_3:79682671-79682690 | Msa0475960:CDS | 30.0% | |
| ATTAAAGATCCAGATGCAAA+CGG | - | chr3_3:79681129-79681148 | None:intergenic | 30.0% | |
| AACATACACAGAAACATAAC+AGG | + | chr3_3:79681320-79681339 | Msa0475960:CDS | 30.0% | |
| ! | TTTTCATTGGAAACTGATCT+TGG | - | chr3_3:79681457-79681476 | None:intergenic | 30.0% |
| ! | AGAAGAACTTGCATTTTCAT+TGG | - | chr3_3:79681470-79681489 | None:intergenic | 30.0% |
| TAAACCTTACAGAAACCATT+AGG | - | chr3_3:79681616-79681635 | None:intergenic | 30.0% | |
| ! | GGTCTAAGAGTATAGTATTA+TGG | + | chr3_3:79681847-79681866 | Msa0475960:intron | 30.0% |
| TGAAGATGGGAAAATTTGAA+GGG | - | chr3_3:79681977-79681996 | None:intergenic | 30.0% | |
| ! | AATTTTCCCATCTTCACTTT+TGG | + | chr3_3:79681981-79682000 | Msa0475960:intron | 30.0% |
| TTAAAAATAGGGAGCAAAAG+TGG | + | chr3_3:79682272-79682291 | Msa0475960:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr3_3:79682307-79682326 | Msa0475960:intron | 30.0% | |
| TATAGGGACTAAAAGTTGAA+GGG | + | chr3_3:79682308-79682327 | Msa0475960:intron | 30.0% | |
| ! | AAGTTGAAGGGAAATTTTAG+AGG | + | chr3_3:79682320-79682339 | Msa0475960:intron | 30.0% |
| ! | AGTTGAAGGGAAATTTTAGA+GGG | + | chr3_3:79682321-79682340 | Msa0475960:intron | 30.0% |
| CAAAAGTGAACACTTCAAAA+TGG | + | chr3_3:79682671-79682690 | Msa0475960:CDS | 30.0% | |
| CTTGACAGATATCACAAAGA+GGG | - | chr3_3:79681055-79681074 | None:intergenic | 35.0% | |
| ACTTGACAGATATCACAAAG+AGG | - | chr3_3:79681056-79681075 | None:intergenic | 35.0% | |
| ATAGAATCGCTCTATCTTCT+TGG | - | chr3_3:79681264-79681283 | None:intergenic | 35.0% | |
| GAAGCTTTCAAGCAATTCTT+TGG | + | chr3_3:79681360-79681379 | Msa0475960:CDS | 35.0% | |
| ! | TTTGATCTAGAGTGGTTTCT+TGG | - | chr3_3:79681421-79681440 | None:intergenic | 35.0% |
| !! | TGTTTGCTTTTGATCTAGAG+TGG | - | chr3_3:79681429-79681448 | None:intergenic | 35.0% |
| AAATGCAAGTTCTTCTTGCA+TGG | + | chr3_3:79681474-79681493 | Msa0475960:CDS | 35.0% | |
| TACCTGATTGAAACAATACC+TGG | + | chr3_3:79681553-79681572 | Msa0475960:CDS | 35.0% | |
| ! | AACCAGGTATTGTTTCAATC+AGG | - | chr3_3:79681558-79681577 | None:intergenic | 35.0% |
| AAGTCTTCAAAACAGTAACC+AGG | - | chr3_3:79681574-79681593 | None:intergenic | 35.0% | |
| TTGAAGGGACTAAAAGTTGA+AGG | - | chr3_3:79681962-79681981 | None:intergenic | 35.0% | |
| GTGAAGATGGGAAAATTTGA+AGG | - | chr3_3:79681978-79681997 | None:intergenic | 35.0% | |
| TGAAATTGTGCAGAAATACG+TGG | - | chr3_3:79682231-79682250 | None:intergenic | 35.0% | |
| !! | GTTGAAGGGAAATTTTAGAG+GGG | + | chr3_3:79682322-79682341 | Msa0475960:intron | 35.0% |
| GCAGAAGCAGAATCATTATT+CGG | + | chr3_3:79682538-79682557 | Msa0475960:intron | 35.0% | |
| GAGCTAATATTAGAAGGAGT+AGG | - | chr3_3:79682628-79682647 | None:intergenic | 35.0% | |
| TCCTTCTAATATTAGCTCAG+TGG | + | chr3_3:79682630-79682649 | Msa0475960:CDS | 35.0% | |
| ACCACTGAGCTAATATTAGA+AGG | - | chr3_3:79682634-79682653 | None:intergenic | 35.0% | |
| TCTAATATTAGCTCAGTGGT+TGG | + | chr3_3:79682634-79682653 | Msa0475960:CDS | 35.0% | |
| GATTATGGATGTACAGTTTC+AGG | + | chr3_3:79682697-79682716 | Msa0475960:CDS | 35.0% | |
| CTTGACAGATATCACAAAGA+GGG | - | chr3_3:79681055-79681074 | None:intergenic | 35.0% | |
| ACTTGACAGATATCACAAAG+AGG | - | chr3_3:79681056-79681075 | None:intergenic | 35.0% | |
| ATAGAATCGCTCTATCTTCT+TGG | - | chr3_3:79681264-79681283 | None:intergenic | 35.0% | |
| GAAGCTTTCAAGCAATTCTT+TGG | + | chr3_3:79681360-79681379 | Msa0475960:CDS | 35.0% | |
| ! | TTTGATCTAGAGTGGTTTCT+TGG | - | chr3_3:79681421-79681440 | None:intergenic | 35.0% |
| !! | TGTTTGCTTTTGATCTAGAG+TGG | - | chr3_3:79681429-79681448 | None:intergenic | 35.0% |
| AAATGCAAGTTCTTCTTGCA+TGG | + | chr3_3:79681474-79681493 | Msa0475960:CDS | 35.0% | |
| TACCTGATTGAAACAATACC+TGG | + | chr3_3:79681553-79681572 | Msa0475960:CDS | 35.0% | |
| ! | AACCAGGTATTGTTTCAATC+AGG | - | chr3_3:79681558-79681577 | None:intergenic | 35.0% |
| AAGTCTTCAAAACAGTAACC+AGG | - | chr3_3:79681574-79681593 | None:intergenic | 35.0% | |
| TTGAAGGGACTAAAAGTTGA+AGG | - | chr3_3:79681962-79681981 | None:intergenic | 35.0% | |
| GTGAAGATGGGAAAATTTGA+AGG | - | chr3_3:79681978-79681997 | None:intergenic | 35.0% | |
| TGAAATTGTGCAGAAATACG+TGG | - | chr3_3:79682231-79682250 | None:intergenic | 35.0% | |
| !! | GTTGAAGGGAAATTTTAGAG+GGG | + | chr3_3:79682322-79682341 | Msa0475960:intron | 35.0% |
| GCAGAAGCAGAATCATTATT+CGG | + | chr3_3:79682538-79682557 | Msa0475960:intron | 35.0% | |
| GAGCTAATATTAGAAGGAGT+AGG | - | chr3_3:79682628-79682647 | None:intergenic | 35.0% | |
| TCCTTCTAATATTAGCTCAG+TGG | + | chr3_3:79682630-79682649 | Msa0475960:CDS | 35.0% | |
| ACCACTGAGCTAATATTAGA+AGG | - | chr3_3:79682634-79682653 | None:intergenic | 35.0% | |
| TCTAATATTAGCTCAGTGGT+TGG | + | chr3_3:79682634-79682653 | Msa0475960:CDS | 35.0% | |
| GATTATGGATGTACAGTTTC+AGG | + | chr3_3:79682697-79682716 | Msa0475960:CDS | 35.0% | |
| CTTTCTCACACACATCACAT+TGG | - | chr3_3:79680899-79680918 | None:intergenic | 40.0% | |
| TTCATCTGAAGGACAGAACA+TGG | - | chr3_3:79680931-79680950 | None:intergenic | 40.0% | |
| GAGAGAAAAACGAGTGTGTT+TGG | - | chr3_3:79681009-79681028 | None:intergenic | 40.0% | |
| ATCACAAAGAGGGTAGTCTT+TGG | - | chr3_3:79681045-79681064 | None:intergenic | 40.0% | |
| TATAAAAACGGTCGCGGTAA+AGG | + | chr3_3:79681100-79681119 | Msa0475960:intron | 40.0% | |
| ! | AATATCGTGCGCTTTTGTAC+AGG | + | chr3_3:79681216-79681235 | Msa0475960:intron | 40.0% |
| TGTTCATTTGCTCCATGGAT+TGG | - | chr3_3:79681304-79681323 | None:intergenic | 40.0% | |
| GTGTATGTTCATTTGCTCCA+TGG | - | chr3_3:79681309-79681328 | None:intergenic | 40.0% | |
| CATAACAGGTTTCTTCTCTC+TGG | + | chr3_3:79681334-79681353 | Msa0475960:CDS | 40.0% | |
| ! | TACTGGTGGATGATGAATCT+GGG | - | chr3_3:79681387-79681406 | None:intergenic | 40.0% |
| ! | ATACTGGTGGATGATGAATC+TGG | - | chr3_3:79681388-79681407 | None:intergenic | 40.0% |
| GATTCATCATCCACCAGTAT+TGG | + | chr3_3:79681388-79681407 | Msa0475960:CDS | 40.0% | |
| CCTTACAGAAACCATTAGGT+GGG | - | chr3_3:79681612-79681631 | None:intergenic | 40.0% | |
| ACCTTACAGAAACCATTAGG+TGG | - | chr3_3:79681613-79681632 | None:intergenic | 40.0% | |
| !! | AGAGGTGCCGAATAAAAACT+TGG | - | chr3_3:79682574-79682593 | None:intergenic | 40.0% |
| CTTTCTCACACACATCACAT+TGG | - | chr3_3:79680899-79680918 | None:intergenic | 40.0% | |
| TTCATCTGAAGGACAGAACA+TGG | - | chr3_3:79680931-79680950 | None:intergenic | 40.0% | |
| GAGAGAAAAACGAGTGTGTT+TGG | - | chr3_3:79681009-79681028 | None:intergenic | 40.0% | |
| ATCACAAAGAGGGTAGTCTT+TGG | - | chr3_3:79681045-79681064 | None:intergenic | 40.0% | |
| TATAAAAACGGTCGCGGTAA+AGG | + | chr3_3:79681100-79681119 | Msa0475960:intron | 40.0% | |
| ! | AATATCGTGCGCTTTTGTAC+AGG | + | chr3_3:79681216-79681235 | Msa0475960:intron | 40.0% |
| TGTTCATTTGCTCCATGGAT+TGG | - | chr3_3:79681304-79681323 | None:intergenic | 40.0% | |
| GTGTATGTTCATTTGCTCCA+TGG | - | chr3_3:79681309-79681328 | None:intergenic | 40.0% | |
| CATAACAGGTTTCTTCTCTC+TGG | + | chr3_3:79681334-79681353 | Msa0475960:CDS | 40.0% | |
| ! | TACTGGTGGATGATGAATCT+GGG | - | chr3_3:79681387-79681406 | None:intergenic | 40.0% |
| ! | ATACTGGTGGATGATGAATC+TGG | - | chr3_3:79681388-79681407 | None:intergenic | 40.0% |
| GATTCATCATCCACCAGTAT+TGG | + | chr3_3:79681388-79681407 | Msa0475960:CDS | 40.0% | |
| CCTTACAGAAACCATTAGGT+GGG | - | chr3_3:79681612-79681631 | None:intergenic | 40.0% | |
| ACCTTACAGAAACCATTAGG+TGG | - | chr3_3:79681613-79681632 | None:intergenic | 40.0% | |
| !! | AGAGGTGCCGAATAAAAACT+TGG | - | chr3_3:79682574-79682593 | None:intergenic | 40.0% |
| TGATGTGTGTGAGAAAGCTG+AGG | + | chr3_3:79680902-79680921 | Msa0475960:CDS | 45.0% | |
| CAAAGAGCAGCTTCATCTGA+AGG | - | chr3_3:79680942-79680961 | None:intergenic | 45.0% | |
| GGATGGTATGATCACATCCA+TGG | - | chr3_3:79680965-79680984 | None:intergenic | 45.0% | |
| !! | TGGTTGCAAGCTTGTTAGCA+CGG | - | chr3_3:79680989-79681008 | None:intergenic | 45.0% |
| ! | TAAAGGTTGCCGTTTGCATC+TGG | + | chr3_3:79681117-79681136 | Msa0475960:intron | 45.0% |
| GAATGTGACCTTCCAATCCA+TGG | + | chr3_3:79681289-79681308 | Msa0475960:CDS | 45.0% | |
| !! | CATTTGCTCCATGGATTGGA+AGG | - | chr3_3:79681300-79681319 | None:intergenic | 45.0% |
| TCTTGGTTCAGAGCCAATAC+TGG | - | chr3_3:79681404-79681423 | None:intergenic | 45.0% | |
| TTGCATGGCTGAAGACAACA+TGG | + | chr3_3:79681489-79681508 | Msa0475960:CDS | 45.0% | |
| GATGCTTCTTTCCCACCTAA+TGG | + | chr3_3:79681598-79681617 | Msa0475960:CDS | 45.0% | |
| CCCACCTAATGGTTTCTGTA+AGG | + | chr3_3:79681609-79681628 | Msa0475960:intron | 45.0% | |
| GAGGGACCAAAAGTGAAGAT+GGG | - | chr3_3:79681990-79682009 | None:intergenic | 45.0% | |
| AGAGGGACCAAAAGTGAAGA+TGG | - | chr3_3:79681991-79682010 | None:intergenic | 45.0% | |
| TGATGTGTGTGAGAAAGCTG+AGG | + | chr3_3:79680902-79680921 | Msa0475960:CDS | 45.0% | |
| CAAAGAGCAGCTTCATCTGA+AGG | - | chr3_3:79680942-79680961 | None:intergenic | 45.0% | |
| GGATGGTATGATCACATCCA+TGG | - | chr3_3:79680965-79680984 | None:intergenic | 45.0% | |
| !! | TGGTTGCAAGCTTGTTAGCA+CGG | - | chr3_3:79680989-79681008 | None:intergenic | 45.0% |
| ! | TAAAGGTTGCCGTTTGCATC+TGG | + | chr3_3:79681117-79681136 | Msa0475960:intron | 45.0% |
| GAATGTGACCTTCCAATCCA+TGG | + | chr3_3:79681289-79681308 | Msa0475960:CDS | 45.0% | |
| !! | CATTTGCTCCATGGATTGGA+AGG | - | chr3_3:79681300-79681319 | None:intergenic | 45.0% |
| TCTTGGTTCAGAGCCAATAC+TGG | - | chr3_3:79681404-79681423 | None:intergenic | 45.0% | |
| TTGCATGGCTGAAGACAACA+TGG | + | chr3_3:79681489-79681508 | Msa0475960:CDS | 45.0% | |
| GATGCTTCTTTCCCACCTAA+TGG | + | chr3_3:79681598-79681617 | Msa0475960:CDS | 45.0% | |
| CCCACCTAATGGTTTCTGTA+AGG | + | chr3_3:79681609-79681628 | Msa0475960:intron | 45.0% | |
| GAGGGACCAAAAGTGAAGAT+GGG | - | chr3_3:79681990-79682009 | None:intergenic | 45.0% | |
| AGAGGGACCAAAAGTGAAGA+TGG | - | chr3_3:79681991-79682010 | None:intergenic | 45.0% | |
| !!! | TCATTTTTTTTTTATAAAAA+CGG | + | chr3_3:79681088-79681107 | Msa0475960:intron | 5.0% |
| !! | ATAAATTTAAGTATAATAAA+GGG | - | chr3_3:79681651-79681670 | None:intergenic | 5.0% |
| !! | TATAAATTTAAGTATAATAA+AGG | - | chr3_3:79681652-79681671 | None:intergenic | 5.0% |
| !!! | ATAATGTAATATTTTAATAA+GGG | - | chr3_3:79682395-79682414 | None:intergenic | 5.0% |
| !!! | AATAATGTAATATTTTAATA+AGG | - | chr3_3:79682396-79682415 | None:intergenic | 5.0% |
| !!! | TCATTTTTTTTTTATAAAAA+CGG | + | chr3_3:79681088-79681107 | Msa0475960:intron | 5.0% |
| !! | ATAAATTTAAGTATAATAAA+GGG | - | chr3_3:79681651-79681670 | None:intergenic | 5.0% |
| !! | TATAAATTTAAGTATAATAA+AGG | - | chr3_3:79681652-79681671 | None:intergenic | 5.0% |
| !!! | ATAATGTAATATTTTAATAA+GGG | - | chr3_3:79682395-79682414 | None:intergenic | 5.0% |
| !!! | AATAATGTAATATTTTAATA+AGG | - | chr3_3:79682396-79682415 | None:intergenic | 5.0% |
| GATGAAGCTGCTCTTTGCCA+TGG | + | chr3_3:79680945-79680964 | Msa0475960:CDS | 50.0% | |
| !! | AAGCTTGTTAGCACGGTGGA+TGG | - | chr3_3:79680982-79681001 | None:intergenic | 50.0% |
| !! | TTGCAAGCTTGTTAGCACGG+TGG | - | chr3_3:79680986-79681005 | None:intergenic | 50.0% |
| !! | GGTAGTCTTTGGAGTTGAGG+TGG | - | chr3_3:79681034-79681053 | None:intergenic | 50.0% |
| !! | GAGGGTAGTCTTTGGAGTTG+AGG | - | chr3_3:79681037-79681056 | None:intergenic | 50.0% |
| TGGTTCAGAGCCAATACTGG+TGG | - | chr3_3:79681401-79681420 | None:intergenic | 50.0% | |
| GACAACATGGCTAGTGACAC+TGG | + | chr3_3:79681502-79681521 | Msa0475960:CDS | 50.0% | |
| ! | TTATTCGGCACCTCTAGCTC+AGG | + | chr3_3:79682579-79682598 | Msa0475960:CDS | 50.0% |
| GATGAAGCTGCTCTTTGCCA+TGG | + | chr3_3:79680945-79680964 | Msa0475960:CDS | 50.0% | |
| !! | AAGCTTGTTAGCACGGTGGA+TGG | - | chr3_3:79680982-79681001 | None:intergenic | 50.0% |
| !! | TTGCAAGCTTGTTAGCACGG+TGG | - | chr3_3:79680986-79681005 | None:intergenic | 50.0% |
| !! | GGTAGTCTTTGGAGTTGAGG+TGG | - | chr3_3:79681034-79681053 | None:intergenic | 50.0% |
| !! | GAGGGTAGTCTTTGGAGTTG+AGG | - | chr3_3:79681037-79681056 | None:intergenic | 50.0% |
| TGGTTCAGAGCCAATACTGG+TGG | - | chr3_3:79681401-79681420 | None:intergenic | 50.0% | |
| GACAACATGGCTAGTGACAC+TGG | + | chr3_3:79681502-79681521 | Msa0475960:CDS | 50.0% | |
| ! | TTATTCGGCACCTCTAGCTC+AGG | + | chr3_3:79682579-79682598 | Msa0475960:CDS | 50.0% |
| ! | CGTGCGCTTTTGTACAGGAG+AGG | + | chr3_3:79681221-79681240 | Msa0475960:intron | 55.0% |
| ! | GCTTTTGTACAGGAGAGGCG+TGG | + | chr3_3:79681226-79681245 | Msa0475960:intron | 55.0% |
| ! | GCTGATTCAGCCTGAGCTAG+AGG | - | chr3_3:79682592-79682611 | None:intergenic | 55.0% |
| ! | CGTGCGCTTTTGTACAGGAG+AGG | + | chr3_3:79681221-79681240 | Msa0475960:intron | 55.0% |
| ! | GCTTTTGTACAGGAGAGGCG+TGG | + | chr3_3:79681226-79681245 | Msa0475960:intron | 55.0% |
| ! | GCTGATTCAGCCTGAGCTAG+AGG | - | chr3_3:79682592-79682611 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79680888 | 79682762 | 79680888 | ID=Msa0475960;Name=Msa0475960 |
| chr3_3 | mRNA | 79680888 | 79682762 | 79680888 | ID=Msa0475960-mRNA-1;Parent=Msa0475960;Name=Msa0475960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|262 |
| chr3_3 | exon | 79680888 | 79681073 | 79680888 | ID=Msa0475960-mRNA-1:exon:21561;Parent=Msa0475960-mRNA-1 |
| chr3_3 | exon | 79681238 | 79681619 | 79681238 | ID=Msa0475960-mRNA-1:exon:21562;Parent=Msa0475960-mRNA-1 |
| chr3_3 | exon | 79682542 | 79682762 | 79682542 | ID=Msa0475960-mRNA-1:exon:21563;Parent=Msa0475960-mRNA-1 |
| chr3_3 | CDS | 79680888 | 79681073 | 79680888 | ID=Msa0475960-mRNA-1:cds;Parent=Msa0475960-mRNA-1 |
| chr3_3 | CDS | 79681238 | 79681619 | 79681238 | ID=Msa0475960-mRNA-1:cds;Parent=Msa0475960-mRNA-1 |
| chr3_3 | CDS | 79682542 | 79682762 | 79682542 | ID=Msa0475960-mRNA-1:cds;Parent=Msa0475960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
