Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438450 | XP_003591971.1 | 97.773 | 494 | 11 | 0 | 1 | 494 | 1 | 494 | 0.0 | 996 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438450 | G7I9M5 | 97.773 | 494 | 11 | 0 | 1 | 494 | 1 | 494 | 0.0 | 996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1438450 | -0.802109 | 6.556589e-49 | -8.615850e-47 |
| Msa0000940 | Msa1438450 | 0.805240 | 1.469025e-49 | -8.615850e-47 |
| Msa0005000 | Msa1438450 | -0.840920 | 6.501504e-58 | -8.615850e-47 |
| Msa0010770 | Msa1438450 | 0.813578 | 2.383960e-51 | -8.615850e-47 |
| Msa0016740 | Msa1438450 | -0.802283 | 6.038298e-49 | -8.615850e-47 |
| Msa0026660 | Msa1438450 | 0.802518 | 5.401639e-49 | -8.615850e-47 |
| Msa0027420 | Msa1438450 | 0.816081 | 6.646089e-52 | -8.615850e-47 |
| Msa0027580 | Msa1438450 | 0.808424 | 3.118398e-50 | -8.615850e-47 |
| Msa0032370 | Msa1438450 | 0.826880 | 2.128190e-54 | -8.615850e-47 |
| Msa0047250 | Msa1438450 | 0.810104 | 1.360945e-50 | -8.615850e-47 |
| Msa0075340 | Msa1438450 | 0.809098 | 2.238165e-50 | -8.615850e-47 |
| Msa0090030 | Msa1438450 | 0.822042 | 2.926999e-53 | -8.615850e-47 |
| Msa0092170 | Msa1438450 | 0.819202 | 1.314514e-52 | -8.615850e-47 |
| Msa0092440 | Msa1438450 | 0.804332 | 2.272822e-49 | -8.615850e-47 |
| Msa0094010 | Msa1438450 | 0.839008 | 2.049016e-57 | -8.615850e-47 |
| Msa0098390 | Msa1438450 | -0.845401 | 4.155470e-59 | -8.615850e-47 |
| Msa0119320 | Msa1438450 | 0.818737 | 1.676643e-52 | -8.615850e-47 |
| Msa1344850 | Msa1438450 | 0.811930 | 5.471690e-51 | -8.615850e-47 |
| Msa1353800 | Msa1438450 | 0.806646 | 7.433819e-50 | -8.615850e-47 |
| Msa1363700 | Msa1438450 | 0.802154 | 6.419207e-49 | -8.615850e-47 |
| Msa1364060 | Msa1438450 | 0.823175 | 1.595705e-53 | -8.615850e-47 |
| Msa1373880 | Msa1438450 | 0.804276 | 2.334938e-49 | -8.615850e-47 |
| Msa1393800 | Msa1438450 | 0.866401 | 2.929809e-65 | -8.615850e-47 |
| Msa1397940 | Msa1438450 | 0.824511 | 7.756552e-54 | -8.615850e-47 |
| Msa1398860 | Msa1438450 | 0.819075 | 1.404717e-52 | -8.615850e-47 |
| Msa1422840 | Msa1438450 | 0.840850 | 6.782710e-58 | -8.615850e-47 |
| Msa1425340 | Msa1438450 | 0.836112 | 1.132481e-56 | -8.615850e-47 |
| Msa1426910 | Msa1438450 | 0.814481 | 1.507420e-51 | -8.615850e-47 |
| Msa1438450 | Msa1438640 | 0.804406 | 2.193785e-49 | -8.615850e-47 |
| Msa1438450 | Msa1458030 | 0.800469 | 1.420216e-48 | -8.615850e-47 |
| Msa1438450 | Msa1459910 | 0.814155 | 1.779579e-51 | -8.615850e-47 |
| Msa1438450 | Msa1463470 | 0.841772 | 3.879159e-58 | -8.615850e-47 |
| Msa1438450 | Msa1464290 | 0.802467 | 5.532347e-49 | -8.615850e-47 |
| Msa0606740 | Msa1438450 | 0.814481 | 1.507251e-51 | -8.615850e-47 |
| Msa0606810 | Msa1438450 | 0.801572 | 8.451447e-49 | -8.615850e-47 |
| Msa0607290 | Msa1438450 | -0.820410 | 6.960056e-53 | -8.615850e-47 |
| Msa0608910 | Msa1438450 | 0.807574 | 4.729886e-50 | -8.615850e-47 |
| Msa0614210 | Msa1438450 | 0.828704 | 7.751406e-55 | -8.615850e-47 |
| Msa0615660 | Msa1438450 | 0.800364 | 1.492022e-48 | -8.615850e-47 |
| Msa0618200 | Msa1438450 | -0.801924 | 7.157058e-49 | -8.615850e-47 |
| Msa0621240 | Msa1438450 | 0.827687 | 1.363425e-54 | -8.615850e-47 |
| Msa0625790 | Msa1438450 | 0.825423 | 4.726037e-54 | -8.615850e-47 |
| Msa0638690 | Msa1438450 | 0.805527 | 1.278950e-49 | -8.615850e-47 |
| Msa0639120 | Msa1438450 | 0.816501 | 5.353402e-52 | -8.615850e-47 |
| Msa0649410 | Msa1438450 | 0.810478 | 1.129837e-50 | -8.615850e-47 |
| Msa0649450 | Msa1438450 | 0.813033 | 3.141052e-51 | -8.615850e-47 |
| Msa0658480 | Msa1438450 | 0.815384 | 9.505862e-52 | -8.615850e-47 |
| Msa0659990 | Msa1438450 | 0.815311 | 9.863770e-52 | -8.615850e-47 |
| Msa0664760 | Msa1438450 | 0.815067 | 1.117673e-51 | -8.615850e-47 |
| Msa0687230 | Msa1438450 | 0.843996 | 9.938076e-59 | -8.615850e-47 |
| Msa0687450 | Msa1438450 | 0.831521 | 1.592840e-55 | -8.615850e-47 |
| Msa0697400 | Msa1438450 | 0.803649 | 3.152213e-49 | -8.615850e-47 |
| Msa0697690 | Msa1438450 | 0.814566 | 1.443338e-51 | -8.615850e-47 |
| Msa0699810 | Msa1438450 | 0.809155 | 2.175783e-50 | -8.615850e-47 |
| Msa0707390 | Msa1438450 | 0.843115 | 1.708382e-58 | -8.615850e-47 |
| Msa0711490 | Msa1438450 | 0.811780 | 5.897841e-51 | -8.615850e-47 |
| Msa0716860 | Msa1438450 | 0.801112 | 1.049817e-48 | -8.615850e-47 |
| Msa0730640 | Msa1438450 | 0.814139 | 1.793876e-51 | -8.615850e-47 |
| Msa0734960 | Msa1438450 | 0.812500 | 4.109698e-51 | -8.615850e-47 |
| Msa0742510 | Msa1438450 | 0.801188 | 1.013191e-48 | -8.615850e-47 |
| Msa0747720 | Msa1438450 | -0.835023 | 2.135462e-56 | -8.615850e-47 |
| Msa0749400 | Msa1438450 | 0.813789 | 2.142150e-51 | -8.615850e-47 |
| Msa0756930 | Msa1438450 | 0.815841 | 7.518237e-52 | -8.615850e-47 |
| Msa0768810 | Msa1438450 | 0.814235 | 1.708120e-51 | -8.615850e-47 |
| Msa0784620 | Msa1438450 | 0.803547 | 3.309708e-49 | -8.615850e-47 |
| Msa0795660 | Msa1438450 | 0.827632 | 1.405346e-54 | -8.615850e-47 |
| Msa0798810 | Msa1438450 | -0.814714 | 1.338626e-51 | -8.615850e-47 |
| Msa0813930 | Msa1438450 | 0.804908 | 1.723695e-49 | -8.615850e-47 |
| Msa0818630 | Msa1438450 | 0.802542 | 5.341087e-49 | -8.615850e-47 |
| Msa0820530 | Msa1438450 | -0.807966 | 3.904866e-50 | -8.615850e-47 |
| Msa0820890 | Msa1438450 | 0.807846 | 4.141247e-50 | -8.615850e-47 |
| Msa0824730 | Msa1438450 | 0.822215 | 2.668512e-53 | -8.615850e-47 |
| Msa0826510 | Msa1438450 | 0.818140 | 2.290147e-52 | -8.615850e-47 |
| Msa0832820 | Msa1438450 | 0.804046 | 2.607239e-49 | -8.615850e-47 |
| Msa0126230 | Msa1438450 | 0.811951 | 5.414832e-51 | -8.615850e-47 |
| Msa0127040 | Msa1438450 | 0.834041 | 3.768355e-56 | -8.615850e-47 |
| Msa0133720 | Msa1438450 | 0.801639 | 8.190150e-49 | -8.615850e-47 |
| Msa0133820 | Msa1438450 | 0.803499 | 3.386040e-49 | -8.615850e-47 |
| Msa0138210 | Msa1438450 | 0.830203 | 3.351361e-55 | -8.615850e-47 |
| Msa0140400 | Msa1438450 | 0.801584 | 8.404802e-49 | -8.615850e-47 |
| Msa0145150 | Msa1438450 | 0.807092 | 5.985562e-50 | -8.615850e-47 |
| Msa0165330 | Msa1438450 | 0.817855 | 2.655762e-52 | -8.615850e-47 |
| Msa0179000 | Msa1438450 | 0.803659 | 3.136131e-49 | -8.615850e-47 |
| Msa0193600 | Msa1438450 | 0.835589 | 1.536442e-56 | -8.615850e-47 |
| Msa0194720 | Msa1438450 | 0.824433 | 8.093264e-54 | -8.615850e-47 |
| Msa0212750 | Msa1438450 | -0.820286 | 7.431203e-53 | -8.615850e-47 |
| Msa0215360 | Msa1438450 | 0.818332 | 2.072021e-52 | -8.615850e-47 |
| Msa0224150 | Msa1438450 | 0.808238 | 3.416197e-50 | -8.615850e-47 |
| Msa0227310 | Msa1438450 | -0.804698 | 1.906986e-49 | -8.615850e-47 |
| Msa0229940 | Msa1438450 | 0.853251 | 2.704138e-61 | -8.615850e-47 |
| Msa0236740 | Msa1438450 | 0.804257 | 2.355985e-49 | -8.615850e-47 |
| Msa1227690 | Msa1438450 | 0.800266 | 1.562333e-48 | -8.615850e-47 |
| Msa1246530 | Msa1438450 | -0.803373 | 3.595844e-49 | -8.615850e-47 |
| Msa1262960 | Msa1438450 | 0.806539 | 7.830946e-50 | -8.615850e-47 |
| Msa1294840 | Msa1438450 | 0.840448 | 8.643165e-58 | -8.615850e-47 |
| Msa1294960 | Msa1438450 | 0.819858 | 9.311557e-53 | -8.615850e-47 |
| Msa1296300 | Msa1438450 | 0.858299 | 9.062937e-63 | -8.615850e-47 |
| Msa1299360 | Msa1438450 | 0.814762 | 1.306000e-51 | -8.615850e-47 |
| Msa1329450 | Msa1438450 | 0.819083 | 1.398830e-52 | -8.615850e-47 |
| Msa1330890 | Msa1438450 | -0.823795 | 1.142608e-53 | -8.615850e-47 |
| Msa1338250 | Msa1438450 | 0.821134 | 4.744214e-53 | -8.615850e-47 |
| Msa0403190 | Msa1438450 | 0.814000 | 1.925307e-51 | -8.615850e-47 |
| Msa0431410 | Msa1438450 | 0.826392 | 2.781351e-54 | -8.615850e-47 |
| Msa0431770 | Msa1438450 | 0.817206 | 3.718779e-52 | -8.615850e-47 |
| Msa0432070 | Msa1438450 | 0.836766 | 7.718367e-57 | -8.615850e-47 |
| Msa0436200 | Msa1438450 | 0.828953 | 6.750565e-55 | -8.615850e-47 |
| Msa0439230 | Msa1438450 | 0.814308 | 1.646010e-51 | -8.615850e-47 |
| Msa0442310 | Msa1438450 | 0.831256 | 1.850347e-55 | -8.615850e-47 |
| Msa0465920 | Msa1438450 | 0.829936 | 3.894822e-55 | -8.615850e-47 |
| Msa0465960 | Msa1438450 | 0.828665 | 7.922675e-55 | -8.615850e-47 |
| Msa0475960 | Msa1438450 | 0.800588 | 1.343513e-48 | -8.615850e-47 |
| Msa0478580 | Msa1438450 | 0.806111 | 9.638524e-50 | -8.615850e-47 |
| Msa0980940 | Msa1438450 | 0.802319 | 5.936415e-49 | -8.615850e-47 |
| Msa0985550 | Msa1438450 | 0.843202 | 1.619662e-58 | -8.615850e-47 |
| Msa1010460 | Msa1438450 | 0.820311 | 7.333056e-53 | -8.615850e-47 |
| Msa1036740 | Msa1438450 | 0.847120 | 1.413452e-59 | -8.615850e-47 |
| Msa1048750 | Msa1438450 | -0.806889 | 6.604955e-50 | -8.615850e-47 |
| Msa1063700 | Msa1438450 | 0.832554 | 8.847224e-56 | -8.615850e-47 |
| Msa1070390 | Msa1438450 | 0.821937 | 3.095889e-53 | -8.615850e-47 |
| Msa1076600 | Msa1438450 | 0.810040 | 1.404520e-50 | -8.615850e-47 |
| Msa1078000 | Msa1438450 | 0.820533 | 6.524215e-53 | -8.615850e-47 |
| Msa1083880 | Msa1438450 | 0.809684 | 1.675629e-50 | -8.615850e-47 |
| Msa1085970 | Msa1438450 | 0.802946 | 4.406986e-49 | -8.615850e-47 |
| Msa1095790 | Msa1438450 | 0.820022 | 8.540611e-53 | -8.615850e-47 |
| Msa1098720 | Msa1438450 | -0.814296 | 1.655863e-51 | -8.615850e-47 |
| Msa1100520 | Msa1438450 | -0.802008 | 6.876921e-49 | -8.615850e-47 |
| Msa0241540 | Msa1438450 | 0.801616 | 8.279323e-49 | -8.615850e-47 |
| Msa0252240 | Msa1438450 | 0.801430 | 9.038732e-49 | -8.615850e-47 |
| Msa0262480 | Msa1438450 | 0.808969 | 2.384503e-50 | -8.615850e-47 |
| Msa0269520 | Msa1438450 | 0.806877 | 6.645577e-50 | -8.615850e-47 |
| Msa0273650 | Msa1438450 | 0.832142 | 1.119286e-55 | -8.615850e-47 |
| Msa0281360 | Msa1438450 | 0.809857 | 1.538125e-50 | -8.615850e-47 |
| Msa0291020 | Msa1438450 | 0.820677 | 6.043848e-53 | -8.615850e-47 |
| Msa0301810 | Msa1438450 | 0.801583 | 8.407341e-49 | -8.615850e-47 |
| Msa0322590 | Msa1438450 | 0.814980 | 1.168818e-51 | -8.615850e-47 |
| Msa0346990 | Msa1438450 | 0.803978 | 2.692937e-49 | -8.615850e-47 |
| Msa1113590 | Msa1438450 | 0.821036 | 4.998774e-53 | -8.615850e-47 |
| Msa1113880 | Msa1438450 | 0.809918 | 1.491802e-50 | -8.615850e-47 |
| Msa1122780 | Msa1438450 | 0.801604 | 8.325251e-49 | -8.615850e-47 |
| Msa1127540 | Msa1438450 | 0.838280 | 3.157890e-57 | -8.615850e-47 |
| Msa1133630 | Msa1438450 | 0.801320 | 9.520040e-49 | -8.615850e-47 |
| Msa1136790 | Msa1438450 | 0.819864 | 9.285081e-53 | -8.615850e-47 |
| Msa1140590 | Msa1438450 | 0.801897 | 7.250510e-49 | -8.615850e-47 |
| Msa1163870 | Msa1438450 | 0.802203 | 6.271556e-49 | -8.615850e-47 |
| Msa1172130 | Msa1438450 | -0.834065 | 3.716711e-56 | -8.615850e-47 |
| Msa1176980 | Msa1438450 | 0.802726 | 4.893961e-49 | -8.615850e-47 |
| Msa1178050 | Msa1438450 | 0.804257 | 2.356410e-49 | -8.615850e-47 |
| Msa1181170 | Msa1438450 | -0.846183 | 2.549380e-59 | -8.615850e-47 |
| Msa1185130 | Msa1438450 | 0.804075 | 2.571172e-49 | -8.615850e-47 |
| Msa1192850 | Msa1438450 | 0.803593 | 3.237367e-49 | -8.615850e-47 |
| Msa1198880 | Msa1438450 | 0.813637 | 2.314701e-51 | -8.615850e-47 |
| Msa1199290 | Msa1438450 | 0.816262 | 6.053361e-52 | -8.615850e-47 |
| Msa1201810 | Msa1438450 | 0.814410 | 1.562447e-51 | -8.615850e-47 |
| Msa1201830 | Msa1438450 | 0.842876 | 1.978799e-58 | -8.615850e-47 |
| Msa1205480 | Msa1438450 | 0.809513 | 1.823452e-50 | -8.615850e-47 |
| Msa1207730 | Msa1438450 | 0.815945 | 7.128825e-52 | -8.615850e-47 |
| Msa0495220 | Msa1438450 | 0.804864 | 1.760674e-49 | -8.615850e-47 |
| Msa0506940 | Msa1438450 | 0.830669 | 2.577646e-55 | -8.615850e-47 |
| Msa0518960 | Msa1438450 | 0.825440 | 4.683462e-54 | -8.615850e-47 |
| Msa0524590 | Msa1438450 | 0.814150 | 1.784142e-51 | -8.615850e-47 |
| Msa0529320 | Msa1438450 | 0.802278 | 6.051286e-49 | -8.615850e-47 |
| Msa0534080 | Msa1438450 | 0.814942 | 1.191444e-51 | -8.615850e-47 |
| Msa0547680 | Msa1438450 | 0.818354 | 2.047670e-52 | -8.615850e-47 |
| Msa0550570 | Msa1438450 | 0.806702 | 7.235553e-50 | -8.615850e-47 |
| Msa0554180 | Msa1438450 | -0.801530 | 8.619924e-49 | -8.615850e-47 |
| Msa0560470 | Msa1438450 | 0.813870 | 2.056364e-51 | -8.615850e-47 |
| Msa0578090 | Msa1438450 | 0.843360 | 1.469932e-58 | -8.615850e-47 |
| Msa0586850 | Msa1438450 | 0.805848 | 1.094718e-49 | -8.615850e-47 |
| Msa0588120 | Msa1438450 | 0.813743 | 2.192725e-51 | -8.615850e-47 |
| Msa0599900 | Msa1438450 | 0.803228 | 3.852949e-49 | -8.615850e-47 |
| Msa0850150 | Msa1438450 | 0.801799 | 7.592975e-49 | -8.615850e-47 |
| Msa0865620 | Msa1438450 | 0.815475 | 9.070384e-52 | -8.615850e-47 |
| Msa0869010 | Msa1438450 | 0.862416 | 5.147490e-64 | -8.615850e-47 |
| Msa0910670 | Msa1438450 | 0.803554 | 3.297690e-49 | -8.615850e-47 |
| Msa0947530 | Msa1438450 | -0.828693 | 7.803212e-55 | -8.615850e-47 |
| Msa0957450 | Msa1438450 | -0.803757 | 2.993190e-49 | -8.615850e-47 |
| Msa0959010 | Msa1438450 | 0.815950 | 7.109031e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438450 | MtrunA17_Chr1g0200171 | 97.773 | 494 | 11 | 0 | 1 | 494 | 1 | 494 | 0.0 | 996 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438450 | AT2G35800.1 | 53.618 | 539 | 180 | 15 | 1 | 494 | 1 | 514 | 5.77e-177 | 518 |
Find 98 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAATATTATTAAAGTATT+TGG | 0.099574 | tig0028560:+3864 | None:intergenic |
| AGACGCTCCACATTCGTTAA+AGG | 0.220841 | tig0028560:+2653 | None:intergenic |
| CTCTTCTTCACGGATTTAAA+AGG | 0.234062 | tig0028560:+3187 | None:intergenic |
| GAGAATAGCTTCTTCTTATC+AGG | 0.257088 | tig0028560:+2551 | None:intergenic |
| ATGGTATATGAGATTGTTTA+TGG | 0.275201 | tig0028560:+3701 | None:intergenic |
| GAATGCATTCACTAGCTTCT+TGG | 0.277439 | tig0028560:-2867 | Msa1438450:CDS |
| TATGAGATTGTTTATGGAAA+TGG | 0.301480 | tig0028560:+3707 | None:intergenic |
| ACCGATGAAGATTGAACATT+TGG | 0.303810 | tig0028560:+3762 | None:intergenic |
| AATAATATTAAACTATATAT+AGG | 0.304324 | tig0028560:-3853 | Msa1438450:five_prime_UTR |
| GAAAATTGAAAGAGAGTATA+TGG | 0.312221 | tig0028560:+3682 | None:intergenic |
| ATTGAAGAAAAGTGAAATAT+TGG | 0.312509 | tig0028560:-212 | Msa1438450:CDS |
| TTCACGGATTTAAAAGGAAT+TGG | 0.314673 | tig0028560:+3193 | None:intergenic |
| GTCAAAGGGTAGAACAATTA+AGG | 0.322923 | tig0028560:-3074 | Msa1438450:CDS |
| TTCTGTGACTTGGTCTTTGT+TGG | 0.332990 | tig0028560:-3239 | Msa1438450:CDS |
| GAAACAATTCTTATCATTCA+TGG | 0.336176 | tig0028560:-296 | Msa1438450:CDS |
| ATGAGATTGTTTATGGAAAT+GGG | 0.342077 | tig0028560:+3708 | None:intergenic |
| CGAGATCTTCTAAAGTTACT+TGG | 0.343696 | tig0028560:+413 | None:intergenic |
| AGAGATTTAAGCGGTGGTTT+TGG | 0.343981 | tig0028560:+3909 | None:intergenic |
| TAGTGGTGATGATGAAAATA+AGG | 0.346277 | tig0028560:-2729 | Msa1438450:CDS |
| TCTTCTCCAGCTACACTTGA+TGG | 0.346331 | tig0028560:+2779 | None:intergenic |
| GGAAGAAAGTGTGGGAATTT+CGG | 0.348843 | tig0028560:-2708 | Msa1438450:CDS |
| TTAAAGTATTTGGATAAGAT+TGG | 0.353210 | tig0028560:+3874 | None:intergenic |
| TTCAAAGGATTGATCAGAAA+TGG | 0.357137 | tig0028560:-3587 | Msa1438450:exon |
| AATTGCTTCACAAAATGAAA+TGG | 0.373871 | tig0028560:-2756 | Msa1438450:CDS |
| TCGTTGGATTCAGCTCCTTT+TGG | 0.376525 | tig0028560:-2896 | Msa1438450:CDS |
| TTGGAGTCACTAAAGAATTC+AGG | 0.377697 | tig0028560:-193 | Msa1438450:CDS |
| TAAAGTATTTGGATAAGATT+GGG | 0.396451 | tig0028560:+3875 | None:intergenic |
| CTTATCATTCATGGAACAAA+AGG | 0.396866 | tig0028560:-287 | Msa1438450:CDS |
| GAATAAAACTCAAGTGGTTA+AGG | 0.397540 | tig0028560:-3296 | Msa1438450:CDS |
| TCTCTGTGTTTAACCAAGTC+AGG | 0.397953 | tig0028560:-238 | Msa1438450:CDS |
| CTTGGTCTTTGTTGGTTAGT+GGG | 0.402561 | tig0028560:-3231 | Msa1438450:CDS |
| AGTGGATGTGAATGGATTCT+TGG | 0.414809 | tig0028560:-2834 | Msa1438450:CDS |
| ACTTGGTCTTTGTTGGTTAG+TGG | 0.416178 | tig0028560:-3232 | Msa1438450:CDS |
| ACAGCATTGTCTTCATTTGC+AGG | 0.418278 | tig0028560:+166 | None:intergenic |
| GTCAATGAAAGTTCCTTTGA+AGG | 0.419182 | tig0028560:-3356 | Msa1438450:CDS |
| TGATTCCTTCATAACTTGAA+TGG | 0.420963 | tig0028560:+3528 | None:intergenic |
| TTTCTGACCTCTCTTCTTCA+CGG | 0.427959 | tig0028560:+3177 | None:intergenic |
| GTGTATGCACGAAGAATTGT+AGG | 0.430731 | tig0028560:+262 | None:intergenic |
| GTGGATGTGAATGGATTCTT+GGG | 0.432151 | tig0028560:-2833 | Msa1438450:CDS |
| ACAGAAGAATCTATTTCATA+TGG | 0.444548 | tig0028560:-115 | Msa1438450:CDS |
| CAATTCCATTCAAGTTATGA+AGG | 0.451409 | tig0028560:-3533 | Msa1438450:CDS |
| TTTCTTCAATGTCCCTGACT+TGG | 0.451924 | tig0028560:+225 | None:intergenic |
| ATTTCACATGATGATAAACT+TGG | 0.457870 | tig0028560:+3109 | None:intergenic |
| CAAAATGAAATGGGAGATAG+TGG | 0.459763 | tig0028560:-2746 | Msa1438450:CDS |
| CAGCATTCCTTTAACGAATG+TGG | 0.461713 | tig0028560:-2660 | Msa1438450:CDS |
| TTTCATGCTTCTGCTTCCCT+CGG | 0.465640 | tig0028560:-80 | Msa1438450:CDS |
| ATTGCTTCACAAAATGAAAT+GGG | 0.469755 | tig0028560:-2755 | Msa1438450:CDS |
| AGTCTTGATCAAGGAATCAA+TGG | 0.475940 | tig0028560:-2959 | Msa1438450:CDS |
| GAGGAGATTCTTTGAAGAGC+TGG | 0.480794 | tig0028560:-452 | Msa1438450:CDS |
| GGATCGTCTTCAGAGGATCT+AGG | 0.497963 | tig0028560:-59 | Msa1438450:exon |
| TGAAAATAAGGAAGAAAGTG+TGG | 0.499198 | tig0028560:-2717 | Msa1438450:CDS |
| AAAGTTGTGAAGAGGAAAGA+TGG | 0.499219 | tig0028560:-3049 | Msa1438450:CDS |
| GTGTGATGAAGATAGTCATA+AGG | 0.501226 | tig0028560:-3152 | Msa1438450:CDS |
| TTGAACTGCTACCGCAGCTC+GGG | 0.502310 | tig0028560:-2592 | Msa1438450:CDS |
| TGTGGGAATTTCGGCGCAGA+AGG | 0.505380 | tig0028560:-2699 | Msa1438450:CDS |
| ATCACTGTCACCACTTGAAG+TGG | 0.518363 | tig0028560:-3509 | Msa1438450:CDS |
| CTTCAGAGGATCTAGGTAAG+AGG | 0.520735 | tig0028560:-52 | Msa1438450:exon |
| AATGAAGCATAATGAGTCAA+AGG | 0.521403 | tig0028560:-3089 | Msa1438450:CDS |
| GGTGTGCCATCAAGTGTAGC+TGG | 0.522373 | tig0028560:-2785 | Msa1438450:CDS |
| AATGCATTCACATGACCAAA+AGG | 0.522414 | tig0028560:+2881 | None:intergenic |
| GGGCATAAAGTGGATGTGAA+TGG | 0.523224 | tig0028560:-2842 | Msa1438450:CDS |
| ACCAAATGTTCAATCTTCAT+CGG | 0.527282 | tig0028560:-3763 | Msa1438450:five_prime_UTR |
| AAGAGTGATATGAATGGCAG+AGG | 0.532976 | tig0028560:+3953 | None:intergenic |
| ATCTCGAAATTGCAATGAGA+AGG | 0.533355 | tig0028560:-396 | Msa1438450:CDS |
| AATTCTTTAGCATACCTTCG+TGG | 0.537687 | tig0028560:+364 | None:intergenic |
| GCATTCACTAGCTTCTTGGA+AGG | 0.539593 | tig0028560:-2863 | Msa1438450:CDS |
| AAAACAAGTGACTTCTAGTA+CGG | 0.542113 | tig0028560:+335 | None:intergenic |
| ATGAAGCATAATGAGTCAAA+GGG | 0.546005 | tig0028560:-3088 | Msa1438450:CDS |
| TTAATTGCTCAAGTGAAAGA+TGG | 0.547646 | tig0028560:-3421 | Msa1438450:CDS |
| TTGCGAAAACCCACTTCAAG+TGG | 0.550319 | tig0028560:+3499 | None:intergenic |
| ATTGAACTGCTACCGCAGCT+CGG | 0.552137 | tig0028560:-2593 | Msa1438450:CDS |
| ATGTTAAAGAGTGATATGAA+TGG | 0.566797 | tig0028560:+3947 | None:intergenic |
| TCTGAAGACTACACTTTCCA+CGG | 0.567675 | tig0028560:-2633 | Msa1438450:CDS |
| AGGAATGCTGAATATGTTCG+AGG | 0.569544 | tig0028560:+2673 | None:intergenic |
| TGAATGTGGGAAAAGCTCGT+TGG | 0.573132 | tig0028560:-2912 | Msa1438450:CDS |
| GAAAATAAGGAAGAAAGTGT+GGG | 0.574640 | tig0028560:-2716 | Msa1438450:CDS |
| CGGTAGCAGTTCAATCAACT+CGG | 0.575732 | tig0028560:+2601 | None:intergenic |
| CTTCTTGGAAGGGCATAAAG+TGG | 0.578934 | tig0028560:-2852 | Msa1438450:CDS |
| TTTGAAGAGCTGGATAGAGA+TGG | 0.579924 | tig0028560:-442 | Msa1438450:CDS |
| ATCCTCTGAAGACGATCCGA+GGG | 0.582223 | tig0028560:+64 | None:intergenic |
| CTCTGTGTTTAACCAAGTCA+GGG | 0.584014 | tig0028560:-237 | Msa1438450:CDS |
| CATTCACTAGCTTCTTGGAA+GGG | 0.589715 | tig0028560:-2862 | Msa1438450:CDS |
| TTCCCTCGGATCGTCTTCAG+AGG | 0.591340 | tig0028560:-66 | Msa1438450:CDS |
| TTTAAATCCGTGAAGAAGAG+AGG | 0.592984 | tig0028560:-3184 | Msa1438450:CDS |
| AAAATGATGAACTTGAATGT+GGG | 0.594166 | tig0028560:-2925 | Msa1438450:CDS |
| GATCCTCTGAAGACGATCCG+AGG | 0.594754 | tig0028560:+63 | None:intergenic |
| ACACTTCAGAGTCTTGATCA+AGG | 0.597217 | tig0028560:-2968 | Msa1438450:CDS |
| TTTAGATACACAGAGTCTGA+AGG | 0.600767 | tig0028560:-2515 | Msa1438450:intron |
| TTCGTTGTTCTCCCGAGCTG+CGG | 0.604220 | tig0028560:+2581 | None:intergenic |
| ATAGCTTCTTCTTATCAGGA+TGG | 0.609676 | tig0028560:+2555 | None:intergenic |
| TCACTGTCACCACTTGAAGT+GGG | 0.638556 | tig0028560:-3508 | Msa1438450:CDS |
| GAAGCAGAAGCATGAAATTG+CGG | 0.652940 | tig0028560:+86 | None:intergenic |
| GAAGGAGAAAGCTTCCACGA+AGG | 0.673828 | tig0028560:-378 | Msa1438450:CDS |
| CAACTCGGTCAATGAAACCG+TGG | 0.674897 | tig0028560:+2616 | None:intergenic |
| TTTGCAAAGAATAAGACACA+AGG | 0.690260 | tig0028560:-3451 | Msa1438450:CDS |
| ATTGCTCAAGTGAAAGATGG+TGG | 0.690784 | tig0028560:-3418 | Msa1438450:CDS |
| GAGCTGGATAGAGATGGTGA+TGG | 0.691808 | tig0028560:-436 | Msa1438450:CDS |
| TGGATGTGAATGGATTCTTG+GGG | 0.752399 | tig0028560:-2832 | Msa1438450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATCATATTGTAAAAT+AGG | + | tig0028560:1838-1857 | None:intergenic | 10.0% |
| !!! | TTTAAAATATTCATAAAAGA+CGG | - | tig0028560:3370-3389 | Msa1438450:CDS | 10.0% |
| !!! | TTATTTTTCAAATTTTTGTG+TGG | - | tig0028560:339-358 | Msa1438450:CDS | 15.0% |
| !!! | GCACAATTTTAAATAATAAA+AGG | + | tig0028560:1599-1618 | None:intergenic | 15.0% |
| !! | ACAATATGATATAATGTAAA+TGG | - | tig0028560:1843-1862 | Msa1438450:intron | 15.0% |
| !!! | TCTATCTTTAGATTTATTTT+TGG | - | tig0028560:1967-1986 | Msa1438450:intron | 15.0% |
| !! | TAATGAGTTAATAGTAATTT+CGG | - | tig0028560:2447-2466 | Msa1438450:intron | 15.0% |
| !! | TTAATGAATCTTCTTAATTT+AGG | - | tig0028560:2475-2494 | Msa1438450:intron | 15.0% |
| !! | TAATGAATCTTCTTAATTTA+GGG | - | tig0028560:2476-2495 | Msa1438450:intron | 15.0% |
| !!! | AAATATCAAAATTTAAAACC+AGG | - | tig0028560:2804-2823 | Msa1438450:CDS | 15.0% |
| !! | TAATAACAAAATTACTTCTT+TGG | + | tig0028560:2832-2851 | None:intergenic | 15.0% |
| !!! | ATTTTCATTATCATCAAAAA+GGG | - | tig0028560:3514-3533 | Msa1438450:CDS | 15.0% |
| !! | AAGATAAAAAGAGATTTAAG+CGG | + | tig0028560:91-110 | None:intergenic | 20.0% |
| !!! | TAAAGTATTTGGATAAGATT+GGG | + | tig0028560:116-135 | None:intergenic | 20.0% |
| !!! | TTAAAGTATTTGGATAAGAT+TGG | + | tig0028560:117-136 | None:intergenic | 20.0% |
| !!! | AAATATTAGAGGTTTTTGAT+TGG | + | tig0028560:189-208 | None:intergenic | 20.0% |
| !! | TTGATGAAGAAAAATATTAG+AGG | + | tig0028560:200-219 | None:intergenic | 20.0% |
| !!! | AAAAATTTCGACTTTTTCAA+AGG | - | tig0028560:386-405 | Msa1438450:CDS | 20.0% |
| !! | AAAAATGAATAAAACTCAAG+TGG | - | tig0028560:686-705 | Msa1438450:intron | 20.0% |
| !! | ATTAGTATAAGCATGTATAT+AGG | - | tig0028560:1623-1642 | Msa1438450:intron | 20.0% |
| !! | AAAACTATACATCAAATCAT+TGG | - | tig0028560:1923-1942 | Msa1438450:intron | 20.0% |
| !!! | GTTCTTGTGTATTTTAATTA+TGG | + | tig0028560:2040-2059 | None:intergenic | 20.0% |
| !! | TTAAAATACACAAGAACAAT+AGG | - | tig0028560:2043-2062 | Msa1438450:intron | 20.0% |
| !! | ATTCAGATGATGATATTTAT+TGG | - | tig0028560:2379-2398 | Msa1438450:intron | 20.0% |
| !!! | ATTTCTCTTTTTCATTACTA+TGG | - | tig0028560:2653-2672 | Msa1438450:CDS | 20.0% |
| !! | ATCTTAAAAGTTAACTGTAT+AGG | - | tig0028560:2680-2699 | Msa1438450:CDS | 20.0% |
| !! | TTATTAGTATTTCTTTCTGA+AGG | - | tig0028560:2748-2767 | Msa1438450:CDS | 20.0% |
| !! | TATTAGATATGATACCTTAA+TGG | - | tig0028560:2847-2866 | Msa1438450:CDS | 20.0% |
| !!! | AATTTGTATTAGTTCTTTAG+TGG | - | tig0028560:2961-2980 | Msa1438450:CDS | 20.0% |
| !! | TTTAGTGGTCAAATTTATTT+GGG | - | tig0028560:2976-2995 | Msa1438450:CDS | 20.0% |
| !! | ATGATCATTACTCTAAATAA+TGG | - | tig0028560:3184-3203 | Msa1438450:CDS | 20.0% |
| !! | TATCAGCTTATAAAAATGAA+AGG | + | tig0028560:3225-3244 | None:intergenic | 20.0% |
| !!! | CATTTTCATTATCATCAAAA+AGG | - | tig0028560:3513-3532 | Msa1438450:CDS | 20.0% |
| !! | ATTGAAGAAAAGTGAAATAT+TGG | - | tig0028560:3776-3795 | Msa1438450:five_prime_UTR | 20.0% |
| ! | ATGTTAAAGAGTGATATGAA+TGG | + | tig0028560:44-63 | None:intergenic | 25.0% |
| ! | ATGAGATTGTTTATGGAAAT+GGG | + | tig0028560:283-302 | None:intergenic | 25.0% |
| ! | TATGAGATTGTTTATGGAAA+TGG | + | tig0028560:284-303 | None:intergenic | 25.0% |
| ! | ATGGTATATGAGATTGTTTA+TGG | + | tig0028560:290-309 | None:intergenic | 25.0% |
| !! | GAAAATTGAAAGAGAGTATA+TGG | + | tig0028560:309-328 | None:intergenic | 25.0% |
| ! | AATTGAAAAAAGACTCAACT+GGG | + | tig0028560:440-459 | None:intergenic | 25.0% |
| ! | TGTGATGTTAAGAAGAAAAA+AGG | - | tig0028560:606-625 | Msa1438450:intron | 25.0% |
| ! | GTGATGTTAAGAAGAAAAAA+GGG | - | tig0028560:607-626 | Msa1438450:intron | 25.0% |
| ! | ATTTCACATGATGATAAACT+TGG | + | tig0028560:882-901 | None:intergenic | 25.0% |
| ! | AAAAATGATGAACTTGAATG+TGG | - | tig0028560:1062-1081 | Msa1438450:intron | 25.0% |
| ! | AAAATGATGAACTTGAATGT+GGG | - | tig0028560:1063-1082 | Msa1438450:intron | 25.0% |
| !! | AATTTGAATTTTGCAAAGGT+GGG | - | tig0028560:1179-1198 | Msa1438450:intron | 25.0% |
| ! | AATTGCTTCACAAAATGAAA+TGG | - | tig0028560:1232-1251 | Msa1438450:intron | 25.0% |
| ! | ATTGCTTCACAAAATGAAAT+GGG | - | tig0028560:1233-1252 | Msa1438450:intron | 25.0% |
| !!! | TTTAATTTTTGCTTGCAACT+TGG | - | tig0028560:1529-1548 | Msa1438450:intron | 25.0% |
| !! | TTAATTTTTGCTTGCAACTT+GGG | - | tig0028560:1530-1549 | Msa1438450:intron | 25.0% |
| ! | GTATAATAACATAGAACCTT+TGG | - | tig0028560:1563-1582 | Msa1438450:intron | 25.0% |
| ! | ATAAGCATGTATATAGGAAT+AGG | - | tig0028560:1629-1648 | Msa1438450:intron | 25.0% |
| !!! | GCTATCTTATTTTTCTCTAA+AGG | + | tig0028560:1814-1833 | None:intergenic | 25.0% |
| ! | TCAAATCATTGGAAAAGATT+TGG | - | tig0028560:1934-1953 | Msa1438450:intron | 25.0% |
| ! | ATAGAATAATTCAAAGCACA+AGG | - | tig0028560:2010-2029 | Msa1438450:intron | 25.0% |
| ! | CTTTAGATATGATTCATGAT+AGG | - | tig0028560:2222-2241 | Msa1438450:intron | 25.0% |
| ! | TGATTCATGATAGGATATTA+TGG | - | tig0028560:2231-2250 | Msa1438450:intron | 25.0% |
| !! | TAATCTATGCTCAATTTTTC+AGG | - | tig0028560:2413-2432 | Msa1438450:intron | 25.0% |
| !! | AATCTATGCTCAATTTTTCA+GGG | - | tig0028560:2414-2433 | Msa1438450:intron | 25.0% |
| !!! | ATGTAGATTGTGGTTTTAAA+AGG | - | tig0028560:2533-2552 | Msa1438450:CDS | 25.0% |
| ! | AGAAAATAGTTACTCATTCT+TGG | - | tig0028560:2569-2588 | Msa1438450:CDS | 25.0% |
| ! | AAAATTAAGTAGGATACTTG+AGG | - | tig0028560:2610-2629 | Msa1438450:CDS | 25.0% |
| ! | AAATTAAGTAGGATACTTGA+GGG | - | tig0028560:2611-2630 | Msa1438450:CDS | 25.0% |
| ! | CTTTAGTGGTCAAATTTATT+TGG | - | tig0028560:2975-2994 | Msa1438450:CDS | 25.0% |
| !!! | ACAAAGATGATTCTTTTTTG+AGG | - | tig0028560:3452-3471 | Msa1438450:CDS | 25.0% |
| ! | GAAACAATTCTTATCATTCA+TGG | - | tig0028560:3692-3711 | Msa1438450:five_prime_UTR | 25.0% |
| ! | ACAGAAGAATCTATTTCATA+TGG | - | tig0028560:3873-3892 | Msa1438450:five_prime_UTR | 25.0% |
| ATAAAAAGAGATTTAAGCGG+TGG | + | tig0028560:88-107 | None:intergenic | 30.0% | |
| !! | ATTAGAGGTTTTTGATTGGA+CGG | + | tig0028560:185-204 | None:intergenic | 30.0% |
| ACCAAATGTTCAATCTTCAT+CGG | - | tig0028560:225-244 | Msa1438450:CDS | 30.0% | |
| TTCAAAGGATTGATCAGAAA+TGG | - | tig0028560:401-420 | Msa1438450:CDS | 30.0% | |
| GAATTGAAAAAAGACTCAAC+TGG | + | tig0028560:441-460 | None:intergenic | 30.0% | |
| ! | CAATTCCATTCAAGTTATGA+AGG | - | tig0028560:455-474 | Msa1438450:CDS | 30.0% |
| TGATTCCTTCATAACTTGAA+TGG | + | tig0028560:463-482 | None:intergenic | 30.0% | |
| TTTGCAAAGAATAAGACACA+AGG | - | tig0028560:537-556 | Msa1438450:intron | 30.0% | |
| TTAATTGCTCAAGTGAAAGA+TGG | - | tig0028560:567-586 | Msa1438450:intron | 30.0% | |
| GAATAAAACTCAAGTGGTTA+AGG | - | tig0028560:692-711 | Msa1438450:intron | 30.0% | |
| TTCACGGATTTAAAAGGAAT+TGG | + | tig0028560:798-817 | None:intergenic | 30.0% | |
| AATGAAGCATAATGAGTCAA+AGG | - | tig0028560:899-918 | Msa1438450:intron | 30.0% | |
| ATGAAGCATAATGAGTCAAA+GGG | - | tig0028560:900-919 | Msa1438450:intron | 30.0% | |
| TTAAGGAAAAAGTTGTGAAG+AGG | - | tig0028560:931-950 | Msa1438450:intron | 30.0% | |
| ! | GAATTTGAATTTTGCAAAGG+TGG | - | tig0028560:1178-1197 | Msa1438450:intron | 30.0% |
| ! | TAGTGGTGATGATGAAAATA+AGG | - | tig0028560:1259-1278 | Msa1438450:intron | 30.0% |
| TGAAAATAAGGAAGAAAGTG+TGG | - | tig0028560:1271-1290 | Msa1438450:intron | 30.0% | |
| ! | GAAAATAAGGAAGAAAGTGT+GGG | - | tig0028560:1272-1291 | Msa1438450:intron | 30.0% |
| TCAGAAAATAAGAACAGTGT+TGG | - | tig0028560:1722-1741 | Msa1438450:intron | 30.0% | |
| ! | ATTTTGCTCTGATAGATTAG+TGG | - | tig0028560:1754-1773 | Msa1438450:intron | 30.0% |
| ACACAAGCAAAGATAAGATT+AGG | - | tig0028560:1781-1800 | Msa1438450:intron | 30.0% | |
| TTTGACTCTATAGCTTCTAT+AGG | + | tig0028560:1897-1916 | None:intergenic | 30.0% | |
| ! | GGAAAAGATTTGGAGTTAAA+TGG | - | tig0028560:1944-1963 | Msa1438450:intron | 30.0% |
| ACTCAACCTCTAGTTAATTT+GGG | + | tig0028560:2175-2194 | None:intergenic | 30.0% | |
| TACTCAACCTCTAGTTAATT+TGG | + | tig0028560:2176-2195 | None:intergenic | 30.0% | |
| !! | TACTTCATTGGTTCAAATGT+AGG | - | tig0028560:2194-2213 | Msa1438450:intron | 30.0% |
| !! | ATCTATGCTCAATTTTTCAG+GGG | - | tig0028560:2415-2434 | Msa1438450:intron | 30.0% |
| TTGTTCTGTAATGTAGATTG+TGG | - | tig0028560:2523-2542 | Msa1438450:CDS | 30.0% | |
| TCTGCAGCTTAAAATTAAGT+AGG | - | tig0028560:2600-2619 | Msa1438450:CDS | 30.0% | |
| AATTAAGTAGGATACTTGAG+GGG | - | tig0028560:2612-2631 | Msa1438450:CDS | 30.0% | |
| !!! | GTGGTTTTTTCCAAATCTTT+TGG | - | tig0028560:2718-2737 | Msa1438450:CDS | 30.0% |
| !! | TAATTTGCTGCCAAAAGATT+TGG | + | tig0028560:2731-2750 | None:intergenic | 30.0% |
| !! | AAAATTACTTCTTTGGAACC+TGG | + | tig0028560:2825-2844 | None:intergenic | 30.0% |
| TTCAATATGTACTCGTATGA+TGG | + | tig0028560:2887-2906 | None:intergenic | 30.0% | |
| AATCACATTTACAGCAACTA+TGG | - | tig0028560:3006-3025 | Msa1438450:CDS | 30.0% | |
| TATTTCGATTATGTCCATGT+AGG | - | tig0028560:3103-3122 | Msa1438450:CDS | 30.0% | |
| ACAAGCAAAATTGTTCTCTT+TGG | + | tig0028560:3283-3302 | None:intergenic | 30.0% | |
| TAATATGTCATTCCAGAGTT+CGG | + | tig0028560:3481-3500 | None:intergenic | 30.0% | |
| TTCATTATCATCAAAAAGGG+AGG | - | tig0028560:3517-3536 | Msa1438450:CDS | 30.0% | |
| AAAACAAGTGACTTCTAGTA+CGG | + | tig0028560:3656-3675 | None:intergenic | 30.0% | |
| CTTATCATTCATGGAACAAA+AGG | - | tig0028560:3701-3720 | Msa1438450:five_prime_UTR | 30.0% | |
| ACCGATGAAGATTGAACATT+TGG | + | tig0028560:229-248 | None:intergenic | 35.0% | |
| GTCAATGAAAGTTCCTTTGA+AGG | - | tig0028560:632-651 | Msa1438450:intron | 35.0% | |
| !!! | AGTTCCTTTGAAGGCTTTTT+TGG | - | tig0028560:641-660 | Msa1438450:intron | 35.0% |
| !!! | GTTCCTTTGAAGGCTTTTTT+GGG | - | tig0028560:642-661 | Msa1438450:intron | 35.0% |
| ATACCCAAAAAAGCCTTCAA+AGG | + | tig0028560:648-667 | None:intergenic | 35.0% | |
| !! | GTTTGAAGTTTTCTGTGACT+TGG | - | tig0028560:739-758 | Msa1438450:intron | 35.0% |
| CTCTTCTTCACGGATTTAAA+AGG | + | tig0028560:804-823 | None:intergenic | 35.0% | |
| TTTAAATCCGTGAAGAAGAG+AGG | - | tig0028560:804-823 | Msa1438450:intron | 35.0% | |
| GTGTGATGAAGATAGTCATA+AGG | - | tig0028560:836-855 | Msa1438450:intron | 35.0% | |
| GTCAAAGGGTAGAACAATTA+AGG | - | tig0028560:914-933 | Msa1438450:intron | 35.0% | |
| AAAGTTGTGAAGAGGAAAGA+TGG | - | tig0028560:939-958 | Msa1438450:intron | 35.0% | |
| AGTCTTGATCAAGGAATCAA+TGG | - | tig0028560:1029-1048 | Msa1438450:intron | 35.0% | |
| AATGCATTCACATGACCAAA+AGG | + | tig0028560:1110-1129 | None:intergenic | 35.0% | |
| ! | GGGGAATTTGAATTTTGCAA+AGG | - | tig0028560:1175-1194 | Msa1438450:intron | 35.0% |
| CAAAATGAAATGGGAGATAG+TGG | - | tig0028560:1242-1261 | Msa1438450:intron | 35.0% | |
| ATAGCTTCTTCTTATCAGGA+TGG | + | tig0028560:1436-1455 | None:intergenic | 35.0% | |
| GAGAATAGCTTCTTCTTATC+AGG | + | tig0028560:1440-1459 | None:intergenic | 35.0% | |
| TTTAGATACACAGAGTCTGA+AGG | - | tig0028560:1473-1492 | Msa1438450:intron | 35.0% | |
| CATAGAACCTTTGGTTAATG+TGG | - | tig0028560:1572-1591 | Msa1438450:intron | 35.0% | |
| AAAAGGTCCACATTAACCAA+AGG | + | tig0028560:1582-1601 | None:intergenic | 35.0% | |
| GTAGAACTTTATGTAGTACG+AGG | - | tig0028560:1673-1692 | Msa1438450:intron | 35.0% | |
| ! | AATGTAAATGGTCTTGAGTC+TGG | - | tig0028560:1855-1874 | Msa1438450:intron | 35.0% |
| AGAAGCTATAGAGTCAAATC+AGG | - | tig0028560:1899-1918 | Msa1438450:intron | 35.0% | |
| CTACAACCCAAATTAACTAG+AGG | - | tig0028560:2166-2185 | Msa1438450:intron | 35.0% | |
| TTGTCGCTGTATTCATTGAT+AGG | - | tig0028560:2308-2327 | Msa1438450:intron | 35.0% | |
| TGTCGCTGTATTCATTGATA+GGG | - | tig0028560:2309-2328 | Msa1438450:intron | 35.0% | |
| !!! | TCTATGCTCAATTTTTCAGG+GGG | - | tig0028560:2416-2435 | Msa1438450:intron | 35.0% |
| AGAACAAATTTGTGTACCCA+GGG | + | tig0028560:2510-2529 | None:intergenic | 35.0% | |
| TAGGAAGACAGAAGATAAAG+TGG | - | tig0028560:2699-2718 | Msa1438450:CDS | 35.0% | |
| TAGTACATGAGAAGCCATTA+AGG | + | tig0028560:2864-2883 | None:intergenic | 35.0% | |
| ACGAGTACATATTGAAGTTG+AGG | - | tig0028560:2891-2910 | Msa1438450:CDS | 35.0% | |
| CGAGTACATATTGAAGTTGA+GGG | - | tig0028560:2892-2911 | Msa1438450:CDS | 35.0% | |
| TACATATTGAAGTTGAGGGA+TGG | - | tig0028560:2896-2915 | Msa1438450:CDS | 35.0% | |
| !! | CGAGATCTTCTAAAGTTACT+TGG | + | tig0028560:3578-3597 | None:intergenic | 35.0% |
| ATCTCGAAATTGCAATGAGA+AGG | - | tig0028560:3592-3611 | Msa1438450:five_prime_UTR | 35.0% | |
| AATTCTTTAGCATACCTTCG+TGG | + | tig0028560:3627-3646 | None:intergenic | 35.0% | |
| !! | CTAGAAGTCACTTGTTTTCT+AGG | - | tig0028560:3658-3677 | Msa1438450:five_prime_UTR | 35.0% |
| !! | CACTTGTTTTCTAGGTCTTT+TGG | - | tig0028560:3666-3685 | Msa1438450:five_prime_UTR | 35.0% |
| ! | TGTTTTCTAGGTCTTTTGGT+TGG | - | tig0028560:3670-3689 | Msa1438450:five_prime_UTR | 35.0% |
| TTGGAGTCACTAAAGAATTC+AGG | - | tig0028560:3795-3814 | Msa1438450:five_prime_UTR | 35.0% | |
| !!! | TTAAGCGGTGGTTTTGGTTT+TGG | + | tig0028560:76-95 | None:intergenic | 40.0% |
| ! | AGAGATTTAAGCGGTGGTTT+TGG | + | tig0028560:82-101 | None:intergenic | 40.0% |
| ATTGCTCAAGTGAAAGATGG+TGG | - | tig0028560:570-589 | Msa1438450:intron | 40.0% | |
| !! | TTCTGTGACTTGGTCTTTGT+TGG | - | tig0028560:749-768 | Msa1438450:intron | 40.0% |
| ! | ACTTGGTCTTTGTTGGTTAG+TGG | - | tig0028560:756-775 | Msa1438450:intron | 40.0% |
| ! | CTTGGTCTTTGTTGGTTAGT+GGG | - | tig0028560:757-776 | Msa1438450:intron | 40.0% |
| TTTCTGACCTCTCTTCTTCA+CGG | + | tig0028560:814-833 | None:intergenic | 40.0% | |
| ACACTTCAGAGTCTTGATCA+AGG | - | tig0028560:1020-1039 | Msa1438450:intron | 40.0% | |
| ! | GAATGCATTCACTAGCTTCT+TGG | - | tig0028560:1121-1140 | Msa1438450:intron | 40.0% |
| ! | CATTCACTAGCTTCTTGGAA+GGG | - | tig0028560:1126-1145 | Msa1438450:intron | 40.0% |
| ! | AGTGGATGTGAATGGATTCT+TGG | - | tig0028560:1154-1173 | Msa1438450:intron | 40.0% |
| ! | GTGGATGTGAATGGATTCTT+GGG | - | tig0028560:1155-1174 | Msa1438450:intron | 40.0% |
| ! | TGGATGTGAATGGATTCTTG+GGG | - | tig0028560:1156-1175 | Msa1438450:intron | 40.0% |
| ! | TTGAATTTTGCAAAGGTGGG+TGG | - | tig0028560:1182-1201 | Msa1438450:intron | 40.0% |
| ! | GGAAGAAAGTGTGGGAATTT+CGG | - | tig0028560:1280-1299 | Msa1438450:intron | 40.0% |
| AGGAATGCTGAATATGTTCG+AGG | + | tig0028560:1318-1337 | None:intergenic | 40.0% | |
| CAGCATTCCTTTAACGAATG+TGG | - | tig0028560:1328-1347 | Msa1438450:intron | 40.0% | |
| TCTGAAGACTACACTTTCCA+CGG | - | tig0028560:1355-1374 | Msa1438450:intron | 40.0% | |
| ! | GGTTGTGGTGTTTTTCTTGT+GGG | + | tig0028560:2121-2140 | None:intergenic | 40.0% |
| ! | TGGTTGTGGTGTTTTTCTTG+TGG | + | tig0028560:2122-2141 | None:intergenic | 40.0% |
| !!! | CATTGCTGTTTTGTTGGTTG+TGG | + | tig0028560:2136-2155 | None:intergenic | 40.0% |
| !!! | GGTGATCATTGCTGTTTTGT+TGG | + | tig0028560:2142-2161 | None:intergenic | 40.0% |
| !! | GTTAATTTGGGTTGTAGCGA+GGG | + | tig0028560:2163-2182 | None:intergenic | 40.0% |
| !! | AGTTAATTTGGGTTGTAGCG+AGG | + | tig0028560:2164-2183 | None:intergenic | 40.0% |
| CTAGAGGTTGAGTACTTCAT+TGG | - | tig0028560:2182-2201 | Msa1438450:intron | 40.0% | |
| TATGGCGTTATTTGATCGCA+TGG | - | tig0028560:2249-2268 | Msa1438450:intron | 40.0% | |
| AAAGACTCTTCCCACTAGAT+GGG | + | tig0028560:2280-2299 | None:intergenic | 40.0% | |
| GCTGTATTCATTGATAGGGT+AGG | - | tig0028560:2313-2332 | Msa1438450:intron | 40.0% | |
| CATTGATAGGGTAGGATACT+AGG | - | tig0028560:2321-2340 | Msa1438450:intron | 40.0% | |
| GAATATTGATCCAATGAGCC+AGG | - | tig0028560:2352-2371 | Msa1438450:intron | 40.0% | |
| !!! | CTATGCTCAATTTTTCAGGG+GGG | - | tig0028560:2417-2436 | Msa1438450:intron | 40.0% |
| CAGAACAAATTTGTGTACCC+AGG | + | tig0028560:2511-2530 | None:intergenic | 40.0% | |
| ATATGCAGATGTGTCAGCAA+TGG | - | tig0028560:3245-3264 | Msa1438450:CDS | 40.0% | |
| TATGCAGATGTGTCAGCAAT+GGG | - | tig0028560:3246-3265 | Msa1438450:CDS | 40.0% | |
| TAAAAGACGGCTCAGTCTTA+TGG | - | tig0028560:3383-3402 | Msa1438450:CDS | 40.0% | |
| TTTGAAGAGCTGGATAGAGA+TGG | - | tig0028560:3546-3565 | Msa1438450:CDS | 40.0% | |
| GTGTATGCACGAAGAATTGT+AGG | + | tig0028560:3729-3748 | None:intergenic | 40.0% | |
| TCTCTGTGTTTAACCAAGTC+AGG | - | tig0028560:3750-3769 | Msa1438450:five_prime_UTR | 40.0% | |
| CTCTGTGTTTAACCAAGTCA+GGG | - | tig0028560:3751-3770 | Msa1438450:five_prime_UTR | 40.0% | |
| TTTCTTCAATGTCCCTGACT+TGG | + | tig0028560:3766-3785 | None:intergenic | 40.0% | |
| ACAGCATTGTCTTCATTTGC+AGG | + | tig0028560:3825-3844 | None:intergenic | 40.0% | |
| ! | GAAGCAGAAGCATGAAATTG+CGG | + | tig0028560:3905-3924 | None:intergenic | 40.0% |
| ATCACTGTCACCACTTGAAG+TGG | - | tig0028560:479-498 | Msa1438450:intron | 45.0% | |
| TCACTGTCACCACTTGAAGT+GGG | - | tig0028560:480-499 | Msa1438450:intron | 45.0% | |
| TTGCGAAAACCCACTTCAAG+TGG | + | tig0028560:492-511 | None:intergenic | 45.0% | |
| TGAATGTGGGAAAAGCTCGT+TGG | - | tig0028560:1076-1095 | Msa1438450:intron | 45.0% | |
| ! | TCGTTGGATTCAGCTCCTTT+TGG | - | tig0028560:1092-1111 | Msa1438450:intron | 45.0% |
| ! | GCATTCACTAGCTTCTTGGA+AGG | - | tig0028560:1125-1144 | Msa1438450:intron | 45.0% |
| ! | CTTCTTGGAAGGGCATAAAG+TGG | - | tig0028560:1136-1155 | Msa1438450:intron | 45.0% |
| GGGCATAAAGTGGATGTGAA+TGG | - | tig0028560:1146-1165 | Msa1438450:intron | 45.0% | |
| TCTTCTCCAGCTACACTTGA+TGG | + | tig0028560:1212-1231 | None:intergenic | 45.0% | |
| AGACGCTCCACATTCGTTAA+AGG | + | tig0028560:1338-1357 | None:intergenic | 45.0% | |
| CGGTAGCAGTTCAATCAACT+CGG | + | tig0028560:1390-1409 | None:intergenic | 45.0% | |
| TGTAGTACGAGGCTGAATGT+CGG | - | tig0028560:1684-1703 | Msa1438450:intron | 45.0% | |
| !!! | GCGCTTTTTTTTGTGCGTGT+AGG | + | tig0028560:2086-2105 | None:intergenic | 45.0% |
| AAGACTCTTCCCACTAGATG+GGG | + | tig0028560:2279-2298 | None:intergenic | 45.0% | |
| CAAAGACTCTTCCCACTAGA+TGG | + | tig0028560:2281-2300 | None:intergenic | 45.0% | |
| ATCATCATCTGAATCCAGCC+TGG | + | tig0028560:2373-2392 | None:intergenic | 45.0% | |
| ! | AATTTAGGGTTCTAGTGCCC+TGG | - | tig0028560:2490-2509 | Msa1438450:intron | 45.0% |
| ! | ATTTAGGGTTCTAGTGCCCT+GGG | - | tig0028560:2491-2510 | Msa1438450:intron | 45.0% |
| CAGAACTCTTGAGTCCTACA+TGG | + | tig0028560:3120-3139 | None:intergenic | 45.0% | |
| CATGTAGGACTCAAGAGTTC+TGG | - | tig0028560:3118-3137 | Msa1438450:CDS | 45.0% | |
| !!! | TTTTTGAGGTCACCGAACTC+TGG | - | tig0028560:3466-3485 | Msa1438450:CDS | 45.0% |
| ! | GAGGAGATTCTTTGAAGAGC+TGG | - | tig0028560:3536-3555 | Msa1438450:CDS | 45.0% |
| TTTCATGCTTCTGCTTCCCT+CGG | - | tig0028560:3908-3927 | Msa1438450:five_prime_UTR | 45.0% | |
| CTTCAGAGGATCTAGGTAAG+AGG | - | tig0028560:3936-3955 | Msa1438450:five_prime_UTR | 45.0% | |
| !!! | TTTAATATTATTAAAGTATT+TGG | + | tig0028560:127-146 | None:intergenic | 5.0% |
| !! | AATAATATTAAACTATATAT+AGG | - | tig0028560:135-154 | Msa1438450:CDS | 5.0% |
| !! | TATTCTATTAATATATTATT+TGG | + | tig0028560:1998-2017 | None:intergenic | 5.0% |
| ! | GGGTTTTCGCAAAGCTGCAA+AGG | - | tig0028560:500-519 | Msa1438450:intron | 50.0% |
| CAACTCGGTCAATGAAACCG+TGG | + | tig0028560:1375-1394 | None:intergenic | 50.0% | |
| ATTGAACTGCTACCGCAGCT+CGG | - | tig0028560:1395-1414 | Msa1438450:intron | 50.0% | |
| GTAGTACGAGGCTGAATGTC+GGG | - | tig0028560:1685-1704 | Msa1438450:intron | 50.0% | |
| GTCTTGAGTCTGGACATGTG+TGG | - | tig0028560:1865-1884 | Msa1438450:intron | 50.0% | |
| ATTGATCCAATGAGCCAGGC+TGG | - | tig0028560:2356-2375 | Msa1438450:intron | 50.0% | |
| GAGCTGGATAGAGATGGTGA+TGG | - | tig0028560:3552-3571 | Msa1438450:CDS | 50.0% | |
| GAAGGAGAAAGCTTCCACGA+AGG | - | tig0028560:3610-3629 | Msa1438450:five_prime_UTR | 50.0% | |
| ! | ATCCTCTGAAGACGATCCGA+GGG | + | tig0028560:3927-3946 | None:intergenic | 50.0% |
| GGATCGTCTTCAGAGGATCT+AGG | - | tig0028560:3929-3948 | Msa1438450:five_prime_UTR | 50.0% | |
| GGTGTGCCATCAAGTGTAGC+TGG | - | tig0028560:1203-1222 | Msa1438450:intron | 55.0% | |
| TGTGGGAATTTCGGCGCAGA+AGG | - | tig0028560:1289-1308 | Msa1438450:intron | 55.0% | |
| TTGAACTGCTACCGCAGCTC+GGG | - | tig0028560:1396-1415 | Msa1438450:intron | 55.0% | |
| TTCGTTGTTCTCCCGAGCTG+CGG | + | tig0028560:1410-1429 | None:intergenic | 55.0% | |
| CATGGCCAACCCCATCTAGT+GGG | - | tig0028560:2267-2286 | Msa1438450:intron | 55.0% | |
| CTCTTCCCACTAGATGGGGT+TGG | + | tig0028560:2275-2294 | None:intergenic | 55.0% | |
| CTGAATCCAGCCTGGCTCAT+TGG | + | tig0028560:2365-2384 | None:intergenic | 55.0% | |
| TTCCCTCGGATCGTCTTCAG+AGG | - | tig0028560:3922-3941 | Msa1438450:five_prime_UTR | 55.0% | |
| ! | GATCCTCTGAAGACGATCCG+AGG | + | tig0028560:3928-3947 | None:intergenic | 55.0% |
| GCATGGCCAACCCCATCTAG+TGG | - | tig0028560:2266-2285 | Msa1438450:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028560 | gene | 38 | 3972 | 38 | ID=Msa1438450;Name=Msa1438450 |
| tig0028560 | mRNA | 38 | 3972 | 38 | ID=Msa1438450-mRNA-1;Parent=Msa1438450;Name=Msa1438450-mRNA-1;_AED=0.01;_eAED=0.01;_QI=382|1|1|1|1|1|2|22|496 |
| tig0028560 | exon | 38 | 475 | 38 | ID=Msa1438450-mRNA-1:exon:11264;Parent=Msa1438450-mRNA-1 |
| tig0028560 | exon | 2516 | 3972 | 2516 | ID=Msa1438450-mRNA-1:exon:11263;Parent=Msa1438450-mRNA-1 |
| tig0028560 | five_prime_UTR | 3591 | 3972 | 3591 | ID=Msa1438450-mRNA-1:five_prime_utr;Parent=Msa1438450-mRNA-1 |
| tig0028560 | CDS | 2516 | 3590 | 2516 | ID=Msa1438450-mRNA-1:cds;Parent=Msa1438450-mRNA-1 |
| tig0028560 | CDS | 60 | 475 | 60 | ID=Msa1438450-mRNA-1:cds;Parent=Msa1438450-mRNA-1 |
| tig0028560 | three_prime_UTR | 38 | 59 | 38 | ID=Msa1438450-mRNA-1:three_prime_utr;Parent=Msa1438450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
