Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477350 | XP_003603570.1 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.68e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477350 | sp|Q8LD27|PSB6_ARATH | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.39e-149 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477350 | B7FGZ8 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 8.01e-170 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0477310 | Msa0477350 | 0.908783 | 1.171856e-81 | -8.615850e-47 |
| Msa0477350 | Msa0680240 | 0.801841 | 7.444009e-49 | -8.615850e-47 |
| Msa0477350 | Msa0992020 | 0.800599 | 1.336510e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477350 | MtrunA17_Chr3g0139211 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.54e-173 | 476 |
| Msa0477350 | MtrunA17_Chr7g0226711 | 31.282 | 195 | 131 | 2 | 1 | 193 | 24 | 217 | 9.51e-29 | 109 |
| Msa0477350 | MtrunA17_Chr7g0228681 | 30.928 | 194 | 131 | 2 | 1 | 192 | 24 | 216 | 1.88e-28 | 108 |
| Msa0477350 | MtrunA17_Chr3g0116161 | 31.351 | 185 | 125 | 2 | 13 | 196 | 54 | 237 | 1.74e-21 | 90.1 |
| Msa0477350 | MtrunA17_Chr5g0435161 | 27.273 | 209 | 126 | 4 | 13 | 201 | 15 | 217 | 2.52e-16 | 75.1 |
| Msa0477350 | MtrunA17_Chr2g0328831 | 27.273 | 209 | 126 | 4 | 13 | 201 | 15 | 217 | 1.15e-15 | 73.2 |
| Msa0477350 | MtrunA17_Chr5g0394931 | 26.087 | 161 | 117 | 1 | 15 | 173 | 3 | 163 | 1.51e-11 | 61.6 |
| Msa0477350 | MtrunA17_Chr3g0138711 | 92.593 | 27 | 2 | 0 | 116 | 142 | 20 | 46 | 3.15e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477350 | AT4G31300.3 | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.41e-150 | 418 |
| Msa0477350 | AT4G31300.1 | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.41e-150 | 418 |
| Msa0477350 | AT4G31300.2 | 87.826 | 230 | 25 | 2 | 4 | 230 | 3 | 232 | 4.53e-149 | 414 |
| Msa0477350 | AT5G40580.1 | 34.254 | 181 | 118 | 1 | 13 | 193 | 39 | 218 | 2.06e-29 | 111 |
| Msa0477350 | AT5G40580.2 | 34.254 | 181 | 118 | 1 | 13 | 193 | 39 | 218 | 2.06e-29 | 111 |
| Msa0477350 | AT3G27430.2 | 33.702 | 181 | 119 | 1 | 13 | 193 | 39 | 218 | 7.35e-29 | 110 |
| Msa0477350 | AT3G27430.1 | 33.889 | 180 | 118 | 1 | 13 | 192 | 39 | 217 | 1.11e-28 | 109 |
| Msa0477350 | AT5G40580.4 | 33.529 | 170 | 112 | 1 | 24 | 193 | 44 | 212 | 3.18e-25 | 100 |
| Msa0477350 | AT5G40580.3 | 33.529 | 170 | 112 | 1 | 24 | 193 | 44 | 212 | 3.18e-25 | 100 |
| Msa0477350 | AT3G27430.3 | 32.941 | 170 | 113 | 1 | 24 | 193 | 44 | 212 | 9.82e-25 | 99.0 |
| Msa0477350 | AT1G13060.1 | 31.937 | 191 | 128 | 2 | 10 | 199 | 54 | 243 | 2.65e-24 | 97.8 |
| Msa0477350 | AT3G26340.1 | 30.851 | 188 | 128 | 2 | 13 | 199 | 57 | 243 | 1.11e-21 | 90.9 |
| Msa0477350 | AT1G13060.3 | 28.372 | 215 | 128 | 3 | 10 | 199 | 54 | 267 | 3.29e-19 | 84.7 |
| Msa0477350 | AT1G13060.2 | 28.372 | 215 | 128 | 3 | 10 | 199 | 54 | 267 | 3.29e-19 | 84.7 |
| Msa0477350 | AT3G60820.1 | 25.366 | 205 | 127 | 4 | 13 | 197 | 15 | 213 | 1.47e-13 | 67.8 |
| Msa0477350 | AT3G60820.3 | 25.366 | 205 | 127 | 4 | 13 | 197 | 15 | 213 | 1.47e-13 | 67.8 |
| Msa0477350 | AT4G14800.1 | 24.845 | 161 | 119 | 1 | 15 | 173 | 3 | 163 | 9.24e-11 | 59.7 |
Find 93 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGACCTTGTCCATGTTTC+TGG | 0.138949 | 3_3:-81512568 | None:intergenic |
| TACGAAGGTGGTCAGATTTA+TGG | 0.196345 | 3_3:+81514044 | Msa0477350:CDS |
| CATCCTCATGTTGTGTACTA+TGG | 0.245686 | 3_3:+81515893 | Msa0477350:three_prime_UTR |
| CTTCATATGTTCATTGGCTC+TGG | 0.254783 | 3_3:-81515748 | None:intergenic |
| TACAACGGCGGCGTTGTTCT+TGG | 0.277415 | 3_3:+81512636 | Msa0477350:CDS |
| GTTAATTACCAGTGCTGGTT+CGG | 0.311209 | 3_3:-81512668 | None:intergenic |
| AACTCATTGCTGGACATTCT+TGG | 0.313902 | 3_3:+81515721 | Msa0477350:CDS |
| CAATGAACATATGAAGAAAC+TGG | 0.327497 | 3_3:+81515755 | Msa0477350:exon |
| GCAGCAACCTTGACTGTTGC+AGG | 0.328240 | 3_3:-81513542 | None:intergenic |
| TGGCAGAATAACTTACAAAC+TGG | 0.333500 | 3_3:+81513996 | Msa0477350:intron |
| GTGTAATTGATTATATCTTT+TGG | 0.337229 | 3_3:+81515848 | Msa0477350:three_prime_UTR |
| TTCATATGTTCATTGGCTCT+GGG | 0.365565 | 3_3:-81515747 | None:intergenic |
| TCCAGTTCATCATGCCATAT+TGG | 0.366769 | 3_3:-81515691 | None:intergenic |
| TCCAATATGGCATGATGAAC+TGG | 0.367474 | 3_3:+81515690 | Msa0477350:CDS |
| GCAACAGGATCTAGTCAAAA+AGG | 0.375037 | 3_3:+81515462 | Msa0477350:intron |
| CAGTTTCTTCATATGTTCAT+TGG | 0.379854 | 3_3:-81515754 | None:intergenic |
| AGGTTGCTGCAAACCTTGTT+CGG | 0.383622 | 3_3:+81513555 | Msa0477350:CDS |
| AATTGAGGGTGTAGAAGTTA+AGG | 0.385628 | 3_3:-81512487 | None:intergenic |
| TTACAAACTGGGTTAATTGT+TGG | 0.391047 | 3_3:+81514008 | Msa0477350:CDS |
| TTAATTACCAGTGCTGGTTC+GGG | 0.413038 | 3_3:-81512667 | None:intergenic |
| TGGGTTAATTGTTGGTGGTT+GGG | 0.415254 | 3_3:+81514016 | Msa0477350:CDS |
| GGAGGCTCACAACTCATTGC+TGG | 0.419158 | 3_3:+81515711 | Msa0477350:CDS |
| TCATACCGTCTTTCCATGCT+TGG | 0.420597 | 3_3:-81515063 | None:intergenic |
| TTTGCAGGCTGCAGATTCTC+AGG | 0.422283 | 3_3:+81513325 | Msa0477350:intron |
| AATGTCTACGTCTGTCGCTC+TGG | 0.427619 | 3_3:+81512818 | Msa0477350:CDS |
| AAGAACAACGCCGCCGTTGT+AGG | 0.434923 | 3_3:-81512634 | None:intergenic |
| TCTGGGTCCAGTTACTTGTA+TGG | 0.446754 | 3_3:+81515031 | Msa0477350:CDS |
| ACAAATTCGATAAATAGTTC+AGG | 0.448665 | 3_3:-81515827 | None:intergenic |
| ATCACCTGGGTAGAAATTCC+TGG | 0.453082 | 3_3:-81515662 | None:intergenic |
| GATGGTGGTTCCCATGGAAT+GGG | 0.459908 | 3_3:-81512601 | None:intergenic |
| CTGGGTTAATTGTTGGTGGT+TGG | 0.462258 | 3_3:+81514015 | Msa0477350:CDS |
| CAGGTGATCAACTTCCAATA+TGG | 0.465504 | 3_3:+81515677 | Msa0477350:CDS |
| TGTAGAAGTTAAGGGGTACT+TGG | 0.470472 | 3_3:-81512478 | None:intergenic |
| ATTGAGGGTGTAGAAGTTAA+GGG | 0.473380 | 3_3:-81512486 | None:intergenic |
| CGATAAATAGTTCAGGGAAA+AGG | 0.481713 | 3_3:-81515820 | None:intergenic |
| CAGATTTATGGAGTTCCTCT+AGG | 0.481821 | 3_3:+81514056 | Msa0477350:CDS |
| AAGAAGTTAATTACCAGTGC+TGG | 0.483368 | 3_3:-81512673 | None:intergenic |
| TTTCAATGCTCCCCATTCCA+TGG | 0.486263 | 3_3:+81512590 | Msa0477350:CDS |
| CAAATTCGATAAATAGTTCA+GGG | 0.488124 | 3_3:-81515826 | None:intergenic |
| CAAATACCTCCAATAGCAAA+AGG | 0.491340 | 3_3:-81514098 | None:intergenic |
| CCATACCTCAGCTTCATCCT+TGG | 0.493435 | 3_3:-81515086 | None:intergenic |
| ACCGATGATGGTGGTTCCCA+TGG | 0.496891 | 3_3:-81512607 | None:intergenic |
| TGATGGTGGTTCCCATGGAA+TGG | 0.497886 | 3_3:-81512602 | None:intergenic |
| GCCGACTCCCGAACCAGCAC+TGG | 0.502146 | 3_3:+81512660 | Msa0477350:CDS |
| ATCCTCATGTTGTGTACTAT+GGG | 0.504406 | 3_3:+81515894 | Msa0477350:three_prime_UTR |
| ACCAGTGCTGGTTCGGGAGT+CGG | 0.510762 | 3_3:-81512661 | None:intergenic |
| TATAAACTGAATCGAATTGA+GGG | 0.510826 | 3_3:-81512501 | None:intergenic |
| TTATAAACTGAATCGAATTG+AGG | 0.513071 | 3_3:-81512502 | None:intergenic |
| CTACGTCTGTCGCTCTGGAT+CGG | 0.525400 | 3_3:+81512823 | Msa0477350:CDS |
| GATGTCTTACAATGACTGTT+CGG | 0.526951 | 3_3:-81515531 | None:intergenic |
| TTCAATGCTCCCCATTCCAT+GGG | 0.536391 | 3_3:+81512591 | Msa0477350:CDS |
| CAAACTGGGTTAATTGTTGG+TGG | 0.536602 | 3_3:+81514011 | Msa0477350:CDS |
| GCCAGAGAGAAGAAGAAAAG+AGG | 0.536867 | 3_3:-81512529 | None:intergenic |
| AAGCCACTTACGTGTGTTGG+TGG | 0.540050 | 3_3:-81513376 | None:intergenic |
| CATATTGGAAGTTGATCACC+TGG | 0.547295 | 3_3:-81515676 | None:intergenic |
| GAGAGAAGAAGAAAAGAGGC+TGG | 0.549204 | 3_3:-81512525 | None:intergenic |
| GGCAGAATAACTTACAAACT+GGG | 0.553451 | 3_3:+81513997 | Msa0477350:intron |
| TCACTTGCCATTGCTCGTGA+TGG | 0.553661 | 3_3:+81515490 | Msa0477350:CDS |
| TCATATGTTCATTGGCTCTG+GGG | 0.561140 | 3_3:-81515746 | None:intergenic |
| CCACTTACGTGTGTTGGTGG+AGG | 0.564272 | 3_3:-81513373 | None:intergenic |
| ATCGGTGTTACCTACAACGG+CGG | 0.569422 | 3_3:+81512624 | Msa0477350:CDS |
| TCCATGGGAACCACCATCAT+CGG | 0.570798 | 3_3:+81512606 | Msa0477350:CDS |
| GTTGTAGGTAACACCGATGA+TGG | 0.577085 | 3_3:-81512619 | None:intergenic |
| ACTAGCACCATCACGAGCAA+TGG | 0.588426 | 3_3:-81515497 | None:intergenic |
| TTTGACCAAGCATGGAAAGA+CGG | 0.597804 | 3_3:+81515058 | Msa0477350:CDS |
| AATAAGCCACTTACGTGTGT+TGG | 0.608764 | 3_3:-81513379 | None:intergenic |
| GAATCAATTTACCAGAAACA+TGG | 0.612730 | 3_3:+81512557 | Msa0477350:exon |
| TCCCTTGCAGATAAATTCAG+AGG | 0.616499 | 3_3:+81515633 | Msa0477350:intron |
| ATTGCTCGTGATGGTGCTAG+TGG | 0.618953 | 3_3:+81515499 | Msa0477350:CDS |
| TAAATTCAGAGGGAGTGACC+AGG | 0.622381 | 3_3:+81515644 | Msa0477350:CDS |
| CCCTTGCAGATAAATTCAGA+GGG | 0.623795 | 3_3:+81515634 | Msa0477350:intron |
| TACCCATAGTACACAACATG+AGG | 0.625208 | 3_3:-81515896 | None:intergenic |
| TGGACAACCTGCAACAGTCA+AGG | 0.625376 | 3_3:+81513535 | Msa0477350:CDS |
| TCAGGGAAAAGGTCAACAGA+GGG | 0.626144 | 3_3:-81515809 | None:intergenic |
| TATATGCGAGAAGCCGAACA+AGG | 0.628109 | 3_3:-81513568 | None:intergenic |
| ATTTATGGAGTTCCTCTAGG+TGG | 0.628981 | 3_3:+81514059 | Msa0477350:CDS |
| TGTACAATTGTTCCACCTAG+AGG | 0.635768 | 3_3:-81514071 | None:intergenic |
| ATGGTGGTTCCCATGGAATG+GGG | 0.644231 | 3_3:-81512600 | None:intergenic |
| TTGAGGGTGTAGAAGTTAAG+GGG | 0.644793 | 3_3:-81512485 | None:intergenic |
| AATGAACATATGAAGAAACT+GGG | 0.650022 | 3_3:+81515756 | Msa0477350:exon |
| GCTCGTGATGGTGCTAGTGG+CGG | 0.657121 | 3_3:+81515502 | Msa0477350:CDS |
| GGTTGGGACAAGTACGAAGG+TGG | 0.663068 | 3_3:+81514032 | Msa0477350:CDS |
| ATCATCGGTGTTACCTACAA+CGG | 0.663396 | 3_3:+81512621 | Msa0477350:CDS |
| AATATGGCATGATGAACTGG+AGG | 0.666663 | 3_3:+81515693 | Msa0477350:CDS |
| ATGGAAAGACGGTATGACCA+AGG | 0.668497 | 3_3:+81515069 | Msa0477350:CDS |
| TATGACCAAGGATGAAGCTG+AGG | 0.674602 | 3_3:+81515081 | Msa0477350:CDS |
| TTCAGGGAAAAGGTCAACAG+AGG | 0.676661 | 3_3:-81515810 | None:intergenic |
| GTGACCAGGAATTTCTACCC+AGG | 0.683522 | 3_3:+81515658 | Msa0477350:CDS |
| GTAGGTAACACCGATGATGG+TGG | 0.683839 | 3_3:-81512616 | None:intergenic |
| GGTGGTTGGGACAAGTACGA+AGG | 0.709093 | 3_3:+81514029 | Msa0477350:CDS |
| GCTTCTCGCATATAACAACA+AGG | 0.720146 | 3_3:+81513577 | Msa0477350:CDS |
| ATTTACCAGAAACATGGACA+AGG | 0.720322 | 3_3:+81512563 | Msa0477350:exon |
| ATATTGGAAGTTGATCACCT+GGG | 0.757859 | 3_3:-81515675 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATATATAGTCATTTA+GGG | + | chr3_3:81515207-81515226 | Msa0477350:intron | 10.0% |
| !!! | TGAATTTGTAATTCATTTTT+TGG | + | chr3_3:81512974-81512993 | Msa0477350:intron | 15.0% |
| !! | ATAAATACCTATAAACATAT+AGG | + | chr3_3:81513149-81513168 | Msa0477350:intron | 15.0% |
| !! | TAAATACCTATAAACATATA+GGG | + | chr3_3:81513150-81513169 | Msa0477350:intron | 15.0% |
| !! | TCTCAAATAAATTAAGTTTA+TGG | - | chr3_3:81513196-81513215 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAATGCTTTAGAA+AGG | - | chr3_3:81514761-81514780 | None:intergenic | 15.0% |
| !! | CATAATATATATAGTCATTT+AGG | + | chr3_3:81515206-81515225 | Msa0477350:intron | 15.0% |
| !!! | AGGTAAATTGATTTTGATTA+GGG | - | chr3_3:81512706-81512725 | None:intergenic | 20.0% |
| !!! | AAGGTAAATTGATTTTGATT+AGG | - | chr3_3:81512707-81512726 | None:intergenic | 20.0% |
| !!! | TTTGTAATTGTTGTTTCTAA+AGG | + | chr3_3:81512893-81512912 | Msa0477350:intron | 20.0% |
| !! | AAGAAATTGATTAAACTCAT+CGG | - | chr3_3:81513085-81513104 | None:intergenic | 20.0% |
| !! | AAATACCTATAAACATATAG+GGG | + | chr3_3:81513151-81513170 | Msa0477350:intron | 20.0% |
| !!! | GTTTTATTTCAAGATTTTGA+AGG | - | chr3_3:81513718-81513737 | None:intergenic | 20.0% |
| !! | TATATTTCAAGAGAATTACT+TGG | + | chr3_3:81513746-81513765 | Msa0477350:intron | 20.0% |
| !!! | TAATACACATTAACTTGAAA+AGG | - | chr3_3:81513827-81513846 | None:intergenic | 20.0% |
| !! | TGATGTAAATTTATTCTCAT+TGG | + | chr3_3:81513976-81513995 | Msa0477350:intron | 20.0% |
| !! | TTATGAATACAATCTCTATT+AGG | + | chr3_3:81514137-81514156 | Msa0477350:intron | 20.0% |
| !! | ATGAAAAGAAGAAAAGTAAA+AGG | + | chr3_3:81514424-81514443 | Msa0477350:intron | 20.0% |
| !! | TGAAAAGAAGAAAAGTAAAA+GGG | + | chr3_3:81514425-81514444 | Msa0477350:intron | 20.0% |
| !! | TGTAAGAATTATAGTAACTT+CGG | - | chr3_3:81514459-81514478 | None:intergenic | 20.0% |
| !! | TTTGCATAGATAAAAAATCT+AGG | - | chr3_3:81514909-81514928 | None:intergenic | 20.0% |
| !!! | GTGTAATTGATTATATCTTT+TGG | + | chr3_3:81515848-81515867 | Msa0477350:three_prime_UTR | 20.0% |
| !!! | TTAAGATGATGATTTTTAAG+TGG | - | chr3_3:81515978-81515997 | None:intergenic | 20.0% |
| ! | TATAAACTGAATCGAATTGA+GGG | - | chr3_3:81512504-81512523 | None:intergenic | 25.0% |
| ! | TTATAAACTGAATCGAATTG+AGG | - | chr3_3:81512505-81512524 | None:intergenic | 25.0% |
| ! | CGAATCGAAAATTCAAAAAA+GGG | - | chr3_3:81512731-81512750 | None:intergenic | 25.0% |
| ! | TCGAATCGAAAATTCAAAAA+AGG | - | chr3_3:81512732-81512751 | None:intergenic | 25.0% |
| ! | TTCTTTCTCTATCTCTAATT+AGG | + | chr3_3:81512851-81512870 | Msa0477350:intron | 25.0% |
| ! | TCTTTCTCTATCTCTAATTA+GGG | + | chr3_3:81512852-81512871 | Msa0477350:intron | 25.0% |
| ! | TATATAAACTGTAGCTATCA+TGG | - | chr3_3:81513009-81513028 | None:intergenic | 25.0% |
| ! | AAAATCTTGAATAAGATTCC+AGG | - | chr3_3:81513032-81513051 | None:intergenic | 25.0% |
| !!! | AAAGATGAGATTTTTGTTTG+TGG | + | chr3_3:81513282-81513301 | Msa0477350:intron | 25.0% |
| !!! | ATCAAACTATTTCTTTTTGC+AGG | + | chr3_3:81513310-81513329 | Msa0477350:intron | 25.0% |
| !! | CTTTTTCTTGTTAATTAGAG+TGG | + | chr3_3:81513613-81513632 | Msa0477350:intron | 25.0% |
| ! | ACTTCTATTAACATTGTCAA+CGG | - | chr3_3:81513778-81513797 | None:intergenic | 25.0% |
| ! | TCTAGATCAACTTTAGTAAA+AGG | - | chr3_3:81514292-81514311 | None:intergenic | 25.0% |
| ! | GATGTTAGAAAATACTTATC+AGG | - | chr3_3:81514489-81514508 | None:intergenic | 25.0% |
| ! | CAATAAATCTAGCATCAAAA+AGG | - | chr3_3:81514520-81514539 | None:intergenic | 25.0% |
| !! | CTTTTTGATGCTAGATTTAT+TGG | + | chr3_3:81514518-81514537 | Msa0477350:intron | 25.0% |
| ! | TATTTACAGTTATATTGACG+TGG | + | chr3_3:81514553-81514572 | Msa0477350:intron | 25.0% |
| ! | TATGCTTTCTCTATAACTAA+AGG | - | chr3_3:81514640-81514659 | None:intergenic | 25.0% |
| !!! | TGTTGAATGTGAATTTGTTA+AGG | + | chr3_3:81514831-81514850 | Msa0477350:intron | 25.0% |
| !! | TGCTTTCTTTTATAAACCTA+TGG | + | chr3_3:81514982-81515001 | Msa0477350:intron | 25.0% |
| !!! | TACGTGAGTTGTTTTTTTAT+AGG | + | chr3_3:81515007-81515026 | Msa0477350:intron | 25.0% |
| !!! | AGTTGTTTTTTTATAGGATC+TGG | + | chr3_3:81515013-81515032 | Msa0477350:intron | 25.0% |
| !!! | GTTGTTTTTTTATAGGATCT+GGG | + | chr3_3:81515014-81515033 | Msa0477350:intron | 25.0% |
| ! | AAAAAATCCATACAAGTAAC+TGG | - | chr3_3:81515041-81515060 | None:intergenic | 25.0% |
| !!! | TGATTTGTGTTTTAAAGACA+AGG | + | chr3_3:81515562-81515581 | Msa0477350:intron | 25.0% |
| ! | AATGAACATATGAAGAAACT+GGG | + | chr3_3:81515756-81515775 | Msa0477350:exon | 25.0% |
| ! | CAAATTCGATAAATAGTTCA+GGG | - | chr3_3:81515829-81515848 | None:intergenic | 25.0% |
| ! | ACAAATTCGATAAATAGTTC+AGG | - | chr3_3:81515830-81515849 | None:intergenic | 25.0% |
| GAATCAATTTACCAGAAACA+TGG | + | chr3_3:81512557-81512576 | Msa0477350:exon | 30.0% | |
| CGAAAATTCAAAAAAGGGAA+AGG | - | chr3_3:81512726-81512745 | None:intergenic | 30.0% | |
| !!! | TTAGGGTTTAGCGTTTTTTT+AGG | + | chr3_3:81512869-81512888 | Msa0477350:intron | 30.0% |
| !!! | TAGGGTTTAGCGTTTTTTTA+GGG | + | chr3_3:81512870-81512889 | Msa0477350:intron | 30.0% |
| ! | ATGATTGAGATTTGAGCTTT+TGG | + | chr3_3:81512937-81512956 | Msa0477350:intron | 30.0% |
| ATAGCTACAGTTTATATACC+TGG | + | chr3_3:81513011-81513030 | Msa0477350:intron | 30.0% | |
| TCATCGGAGAATAATGTTAT+TGG | - | chr3_3:81513069-81513088 | None:intergenic | 30.0% | |
| TATTTATGCCCAGGTTAAAT+GGG | - | chr3_3:81513132-81513151 | None:intergenic | 30.0% | |
| TTATTTATGCCCAGGTTAAA+TGG | - | chr3_3:81513133-81513152 | None:intergenic | 30.0% | |
| ATAGGTATTTATTTATGCCC+AGG | - | chr3_3:81513141-81513160 | None:intergenic | 30.0% | |
| TAAAGCCCCTATATGTTTAT+AGG | - | chr3_3:81513159-81513178 | None:intergenic | 30.0% | |
| ! | ATTTTATGCAGAATTCAGCT+TGG | + | chr3_3:81513515-81513534 | Msa0477350:intron | 30.0% |
| !!! | ACTAGCATTTTGGAATTTAG+TGG | - | chr3_3:81513652-81513671 | None:intergenic | 30.0% |
| TGTATGTCCACTTAAGTATT+TGG | + | chr3_3:81513950-81513969 | Msa0477350:intron | 30.0% | |
| TTACAAACTGGGTTAATTGT+TGG | + | chr3_3:81514008-81514027 | Msa0477350:CDS | 30.0% | |
| GATGTCAAATCTTGATATCA+AGG | - | chr3_3:81514221-81514240 | None:intergenic | 30.0% | |
| TGATATCAAGATTTGACATC+TGG | + | chr3_3:81514221-81514240 | Msa0477350:intron | 30.0% | |
| AAACTTGTGTAAACAAGAGA+TGG | + | chr3_3:81514329-81514348 | Msa0477350:intron | 30.0% | |
| CTCTCTCTTTCAGTTTAATA+TGG | + | chr3_3:81514401-81514420 | Msa0477350:intron | 30.0% | |
| ! | ACATGATTGGTTCATATACA+TGG | + | chr3_3:81514583-81514602 | Msa0477350:intron | 30.0% |
| GGTTCATATACATGGATAAA+TGG | + | chr3_3:81514591-81514610 | Msa0477350:intron | 30.0% | |
| CATGGATAAATGGAAAAACA+TGG | + | chr3_3:81514601-81514620 | Msa0477350:intron | 30.0% | |
| TAACTAAAGGTTTCCATGAA+AGG | - | chr3_3:81514627-81514646 | None:intergenic | 30.0% | |
| ! | TAGCATAAGAGTATAGTATG+GGG | - | chr3_3:81514668-81514687 | None:intergenic | 30.0% |
| ! | CTAGCATAAGAGTATAGTAT+GGG | - | chr3_3:81514669-81514688 | None:intergenic | 30.0% |
| ! | ACTAGCATAAGAGTATAGTA+TGG | - | chr3_3:81514670-81514689 | None:intergenic | 30.0% |
| ATAAAGACAGCACAATACAA+GGG | - | chr3_3:81514700-81514719 | None:intergenic | 30.0% | |
| AATAAAGACAGCACAATACA+AGG | - | chr3_3:81514701-81514720 | None:intergenic | 30.0% | |
| ! | TTGTGCTGTCTTTATTTAAC+TGG | + | chr3_3:81514705-81514724 | Msa0477350:intron | 30.0% |
| ATCCAAAGAATAGCGTTAAA+GGG | - | chr3_3:81514958-81514977 | None:intergenic | 30.0% | |
| AATCCAAAGAATAGCGTTAA+AGG | - | chr3_3:81514959-81514978 | None:intergenic | 30.0% | |
| TTAGTTGTAGTTAGTTGTGT+TGG | + | chr3_3:81515148-81515167 | Msa0477350:intron | 30.0% | |
| ATTGAGATAGAAACCCTTAA+GGG | - | chr3_3:81515414-81515433 | None:intergenic | 30.0% | |
| !! | AGTGTATTTTTATGTGCAAC+AGG | + | chr3_3:81515447-81515466 | Msa0477350:intron | 30.0% |
| CAGTTTCTTCATATGTTCAT+TGG | - | chr3_3:81515757-81515776 | None:intergenic | 30.0% | |
| CAATGAACATATGAAGAAAC+TGG | + | chr3_3:81515755-81515774 | Msa0477350:exon | 30.0% | |
| !! | ATCTTTTGGTTAGATGTTGT+TGG | + | chr3_3:81515862-81515881 | Msa0477350:three_prime_UTR | 30.0% |
| ! | ATTGAGGGTGTAGAAGTTAA+GGG | - | chr3_3:81512489-81512508 | None:intergenic | 35.0% |
| ! | AATTGAGGGTGTAGAAGTTA+AGG | - | chr3_3:81512490-81512509 | None:intergenic | 35.0% |
| ATTTACCAGAAACATGGACA+AGG | + | chr3_3:81512563-81512582 | Msa0477350:exon | 35.0% | |
| AAGAAGTTAATTACCAGTGC+TGG | - | chr3_3:81512676-81512695 | None:intergenic | 35.0% | |
| CTAATCTAAACTGAGCTTCA+AGG | + | chr3_3:81513235-81513254 | Msa0477350:intron | 35.0% | |
| AACAACAAGGTATGACTTTG+AGG | + | chr3_3:81513590-81513609 | Msa0477350:intron | 35.0% | |
| TTCCAAAATGCTAGTTGCAA+TGG | + | chr3_3:81513657-81513676 | Msa0477350:intron | 35.0% | |
| ! | TCATCATTGCAATTGAGTTG+AGG | + | chr3_3:81513863-81513882 | Msa0477350:intron | 35.0% |
| !! | CAATTGAGTTGAGGATTAAC+AGG | + | chr3_3:81513872-81513891 | Msa0477350:intron | 35.0% |
| GTGACATTATGTCTTCTTGA+TGG | + | chr3_3:81513894-81513913 | Msa0477350:intron | 35.0% | |
| ATCAGAGCCAAATACTTAAG+TGG | - | chr3_3:81513960-81513979 | None:intergenic | 35.0% | |
| TGGCAGAATAACTTACAAAC+TGG | + | chr3_3:81513996-81514015 | Msa0477350:intron | 35.0% | |
| GGCAGAATAACTTACAAACT+GGG | + | chr3_3:81513997-81514016 | Msa0477350:intron | 35.0% | |
| CAAATACCTCCAATAGCAAA+AGG | - | chr3_3:81514101-81514120 | None:intergenic | 35.0% | |
| !! | TCCTAGCATCATTGATTCTT+GGG | - | chr3_3:81514266-81514285 | None:intergenic | 35.0% |
| !! | TTCCTAGCATCATTGATTCT+TGG | - | chr3_3:81514267-81514286 | None:intergenic | 35.0% |
| AAATCCAAGCAATTGCTGAT+AGG | + | chr3_3:81514363-81514382 | Msa0477350:intron | 35.0% | |
| TGATGCTAGATTTATTGGAG+TGG | + | chr3_3:81514523-81514542 | Msa0477350:intron | 35.0% | |
| CAGTTATATTGACGTGGAAA+AGG | + | chr3_3:81514559-81514578 | Msa0477350:intron | 35.0% | |
| TAAAGACAGCACAATACAAG+GGG | - | chr3_3:81514699-81514718 | None:intergenic | 35.0% | |
| TGACTCAACTTTGTAGGAAA+AGG | + | chr3_3:81514789-81514808 | Msa0477350:intron | 35.0% | |
| TCAACTTTGTAGGAAAAGGT+TGG | + | chr3_3:81514793-81514812 | Msa0477350:intron | 35.0% | |
| ! | AAAAGGTTGGTTCTTCCATT+GGG | + | chr3_3:81514806-81514825 | Msa0477350:intron | 35.0% |
| TTCACATTCAACATTCCCAA+TGG | - | chr3_3:81514824-81514843 | None:intergenic | 35.0% | |
| TACCCTTTAACGCTATTCTT+TGG | + | chr3_3:81514953-81514972 | Msa0477350:intron | 35.0% | |
| AAACAACTCACGTAAACCAT+AGG | - | chr3_3:81515001-81515020 | None:intergenic | 35.0% | |
| !!! | ATGGATTTTTTGACCAAGCA+TGG | + | chr3_3:81515050-81515069 | Msa0477350:CDS | 35.0% |
| GTCTCTATTCTTGCAAAATG+AGG | + | chr3_3:81515109-81515128 | Msa0477350:intron | 35.0% | |
| !!! | TGTGTTTGCGAGTTGATTTT+TGG | + | chr3_3:81515230-81515249 | Msa0477350:intron | 35.0% |
| !!! | TTTGCGAGTTGATTTTTGGA+GGG | + | chr3_3:81515234-81515253 | Msa0477350:intron | 35.0% |
| !! | TGATTTTTGGAGGGATTTGT+AGG | + | chr3_3:81515243-81515262 | Msa0477350:intron | 35.0% |
| !! | GATTTTTGGAGGGATTTGTA+GGG | + | chr3_3:81515244-81515263 | Msa0477350:intron | 35.0% |
| !! | TGTTTTTGCAAGTTGGGATT+TGG | - | chr3_3:81515391-81515410 | None:intergenic | 35.0% |
| !!! | TAAGGGTGTTTTTGCAAGTT+GGG | - | chr3_3:81515397-81515416 | None:intergenic | 35.0% |
| !!! | TTAAGGGTGTTTTTGCAAGT+TGG | - | chr3_3:81515398-81515417 | None:intergenic | 35.0% |
| AACTTGCAAAAACACCCTTA+AGG | + | chr3_3:81515397-81515416 | Msa0477350:intron | 35.0% | |
| ACTTGCAAAAACACCCTTAA+GGG | + | chr3_3:81515398-81515417 | Msa0477350:intron | 35.0% | |
| GATTGAGATAGAAACCCTTA+AGG | - | chr3_3:81515415-81515434 | None:intergenic | 35.0% | |
| GGTTTCTATCTCAATCCTTA+CGG | + | chr3_3:81515419-81515438 | Msa0477350:intron | 35.0% | |
| GATGTCTTACAATGACTGTT+CGG | - | chr3_3:81515534-81515553 | None:intergenic | 35.0% | |
| ! | ATATTGGAAGTTGATCACCT+GGG | - | chr3_3:81515678-81515697 | None:intergenic | 35.0% |
| !! | TTCATATGTTCATTGGCTCT+GGG | - | chr3_3:81515750-81515769 | None:intergenic | 35.0% |
| CGATAAATAGTTCAGGGAAA+AGG | - | chr3_3:81515823-81515842 | None:intergenic | 35.0% | |
| ATCCTCATGTTGTGTACTAT+GGG | + | chr3_3:81515894-81515913 | Msa0477350:three_prime_UTR | 35.0% | |
| !! | TGTAGAAGTTAAGGGGTACT+TGG | - | chr3_3:81512481-81512500 | None:intergenic | 40.0% |
| ! | TTGAGGGTGTAGAAGTTAAG+GGG | - | chr3_3:81512488-81512507 | None:intergenic | 40.0% |
| !! | ATCATCGGTGTTACCTACAA+CGG | + | chr3_3:81512621-81512640 | Msa0477350:CDS | 40.0% |
| !! | TTAATTACCAGTGCTGGTTC+GGG | - | chr3_3:81512670-81512689 | None:intergenic | 40.0% |
| !! | GTTAATTACCAGTGCTGGTT+CGG | - | chr3_3:81512671-81512690 | None:intergenic | 40.0% |
| ATTCGATCTCTCTCACTTTC+AGG | + | chr3_3:81512746-81512765 | Msa0477350:intron | 40.0% | |
| ! | GATTTTGTCAGATGCACGAT+TGG | - | chr3_3:81512783-81512802 | None:intergenic | 40.0% |
| TAAACTGTAGCTATCATGGC+TGG | - | chr3_3:81513005-81513024 | None:intergenic | 40.0% | |
| AAAAACCCTCCCATTTAACC+TGG | + | chr3_3:81513120-81513139 | Msa0477350:intron | 40.0% | |
| AAAACCCTCCCATTTAACCT+GGG | + | chr3_3:81513121-81513140 | Msa0477350:intron | 40.0% | |
| ! | GAGCTTCAAGGTATCAATGA+AGG | + | chr3_3:81513247-81513266 | Msa0477350:intron | 40.0% |
| AATAAGCCACTTACGTGTGT+TGG | - | chr3_3:81513382-81513401 | None:intergenic | 40.0% | |
| GCTTCTCGCATATAACAACA+AGG | + | chr3_3:81513577-81513596 | Msa0477350:CDS | 40.0% | |
| ! | CACCATTGCAACTAGCATTT+TGG | - | chr3_3:81513662-81513681 | None:intergenic | 40.0% |
| CAAAATGCTAGTTGCAATGG+TGG | + | chr3_3:81513660-81513679 | Msa0477350:intron | 40.0% | |
| CAAACTGGGTTAATTGTTGG+TGG | + | chr3_3:81514011-81514030 | Msa0477350:CDS | 40.0% | |
| !! | TGGGTTAATTGTTGGTGGTT+GGG | + | chr3_3:81514016-81514035 | Msa0477350:CDS | 40.0% |
| TACGAAGGTGGTCAGATTTA+TGG | + | chr3_3:81514044-81514063 | Msa0477350:CDS | 40.0% | |
| CAGATTTATGGAGTTCCTCT+AGG | + | chr3_3:81514056-81514075 | Msa0477350:CDS | 40.0% | |
| ATTTATGGAGTTCCTCTAGG+TGG | + | chr3_3:81514059-81514078 | Msa0477350:CDS | 40.0% | |
| TGTACAATTGTTCCACCTAG+AGG | - | chr3_3:81514074-81514093 | None:intergenic | 40.0% | |
| !! | GTACAGCAACCTTTTGCTAT+TGG | + | chr3_3:81514089-81514108 | Msa0477350:CDS | 40.0% |
| TCCCAAGAATCAATGATGCT+AGG | + | chr3_3:81514262-81514281 | Msa0477350:intron | 40.0% | |
| TGGAAAAACATGGCCTTTCA+TGG | + | chr3_3:81514611-81514630 | Msa0477350:intron | 40.0% | |
| TACAAAGTTGAGTCAGCTAG+AGG | - | chr3_3:81514784-81514803 | None:intergenic | 40.0% | |
| ! | TCTAGCTGACTCAACTTTGT+AGG | + | chr3_3:81514783-81514802 | Msa0477350:intron | 40.0% |
| ! | GAAAAGGTTGGTTCTTCCAT+TGG | + | chr3_3:81514805-81514824 | Msa0477350:intron | 40.0% |
| !! | TGACTTGCTTGTCAATTTGC+AGG | + | chr3_3:81514860-81514879 | Msa0477350:intron | 40.0% |
| GAATAGCGTTAAAGGGTAAC+TGG | - | chr3_3:81514951-81514970 | None:intergenic | 40.0% | |
| TTTGACCAAGCATGGAAAGA+CGG | + | chr3_3:81515058-81515077 | Msa0477350:CDS | 40.0% | |
| ! | TTGCAAAATGAGGTGTCTGT+TGG | + | chr3_3:81515119-81515138 | Msa0477350:intron | 40.0% |
| !! | TGTAGTTAGTTGTGTTGGCT+TGG | + | chr3_3:81515153-81515172 | Msa0477350:intron | 40.0% |
| !!! | GTTTGCGAGTTGATTTTTGG+AGG | + | chr3_3:81515233-81515252 | Msa0477350:intron | 40.0% |
| ! | TTGCAAGTTGGGATTTGGAA+GGG | - | chr3_3:81515386-81515405 | None:intergenic | 40.0% |
| ! | TTTGCAAGTTGGGATTTGGA+AGG | - | chr3_3:81515387-81515406 | None:intergenic | 40.0% |
| AAAATACACTGTCAGCCGTA+AGG | - | chr3_3:81515437-81515456 | None:intergenic | 40.0% | |
| GCAACAGGATCTAGTCAAAA+AGG | + | chr3_3:81515462-81515481 | Msa0477350:intron | 40.0% | |
| CAAGGGATTCAAAATGAAGC+AGG | - | chr3_3:81515620-81515639 | None:intergenic | 40.0% | |
| TCCCTTGCAGATAAATTCAG+AGG | + | chr3_3:81515633-81515652 | Msa0477350:intron | 40.0% | |
| CCCTCTGAATTTATCTGCAA+GGG | - | chr3_3:81515637-81515656 | None:intergenic | 40.0% | |
| CCCTTGCAGATAAATTCAGA+GGG | + | chr3_3:81515634-81515653 | Msa0477350:intron | 40.0% | |
| TCCCTCTGAATTTATCTGCA+AGG | - | chr3_3:81515638-81515657 | None:intergenic | 40.0% | |
| ! | CATATTGGAAGTTGATCACC+TGG | - | chr3_3:81515679-81515698 | None:intergenic | 40.0% |
| CAGGTGATCAACTTCCAATA+TGG | + | chr3_3:81515677-81515696 | Msa0477350:CDS | 40.0% | |
| TCCAATATGGCATGATGAAC+TGG | + | chr3_3:81515690-81515709 | Msa0477350:CDS | 40.0% | |
| TCCAGTTCATCATGCCATAT+TGG | - | chr3_3:81515694-81515713 | None:intergenic | 40.0% | |
| AATATGGCATGATGAACTGG+AGG | + | chr3_3:81515693-81515712 | Msa0477350:CDS | 40.0% | |
| AACTCATTGCTGGACATTCT+TGG | + | chr3_3:81515721-81515740 | Msa0477350:CDS | 40.0% | |
| !! | TCATATGTTCATTGGCTCTG+GGG | - | chr3_3:81515749-81515768 | None:intergenic | 40.0% |
| !! | CTTCATATGTTCATTGGCTC+TGG | - | chr3_3:81515751-81515770 | None:intergenic | 40.0% |
| CATCCTCATGTTGTGTACTA+TGG | + | chr3_3:81515893-81515912 | Msa0477350:three_prime_UTR | 40.0% | |
| TACCCATAGTACACAACATG+AGG | - | chr3_3:81515899-81515918 | None:intergenic | 40.0% | |
| GAGAGAAGAAGAAAAGAGGC+TGG | - | chr3_3:81512528-81512547 | None:intergenic | 45.0% | |
| ! | GCCTCTTTTCTTCTTCTCTC+TGG | + | chr3_3:81512528-81512547 | Msa0477350:five_prime_UTR | 45.0% |
| GCCAGAGAGAAGAAGAAAAG+AGG | - | chr3_3:81512532-81512551 | None:intergenic | 45.0% | |
| ATCGACCTTGTCCATGTTTC+TGG | - | chr3_3:81512571-81512590 | None:intergenic | 45.0% | |
| TTTCAATGCTCCCCATTCCA+TGG | + | chr3_3:81512590-81512609 | Msa0477350:CDS | 45.0% | |
| TTCAATGCTCCCCATTCCAT+GGG | + | chr3_3:81512591-81512610 | Msa0477350:CDS | 45.0% | |
| GTTGTAGGTAACACCGATGA+TGG | - | chr3_3:81512622-81512641 | None:intergenic | 45.0% | |
| TATGCCCAGGTTAAATGGGA+GGG | - | chr3_3:81513128-81513147 | None:intergenic | 45.0% | |
| TTATGCCCAGGTTAAATGGG+AGG | - | chr3_3:81513129-81513148 | None:intergenic | 45.0% | |
| AGGTTGCTGCAAACCTTGTT+CGG | + | chr3_3:81513555-81513574 | Msa0477350:CDS | 45.0% | |
| TATATGCGAGAAGCCGAACA+AGG | - | chr3_3:81513571-81513590 | None:intergenic | 45.0% | |
| !! | CTGGGTTAATTGTTGGTGGT+TGG | + | chr3_3:81514015-81514034 | Msa0477350:CDS | 45.0% |
| !!! | CAGCAACCTTTTGCTATTGG+AGG | + | chr3_3:81514092-81514111 | Msa0477350:CDS | 45.0% |
| ! | ACGTGGAAAAGGCACATGAT+TGG | + | chr3_3:81514570-81514589 | Msa0477350:intron | 45.0% |
| TTGTCAATTTGCAGGTCTCG+TGG | + | chr3_3:81514868-81514887 | Msa0477350:intron | 45.0% | |
| TCTGGGTCCAGTTACTTGTA+TGG | + | chr3_3:81515031-81515050 | Msa0477350:CDS | 45.0% | |
| TCATACCGTCTTTCCATGCT+TGG | - | chr3_3:81515066-81515085 | None:intergenic | 45.0% | |
| ATGGAAAGACGGTATGACCA+AGG | + | chr3_3:81515069-81515088 | Msa0477350:CDS | 45.0% | |
| TATGACCAAGGATGAAGCTG+AGG | + | chr3_3:81515081-81515100 | Msa0477350:CDS | 45.0% | |
| CAAGGATGAAGCTGAGGTAT+GGG | + | chr3_3:81515087-81515106 | Msa0477350:intron | 45.0% | |
| !!! | GGGAAGGCTTTGGAGTATTT+TGG | - | chr3_3:81515366-81515385 | None:intergenic | 45.0% |
| AAGTTGGGATTTGGAAGGGA+AGG | - | chr3_3:81515382-81515401 | None:intergenic | 45.0% | |
| TAAATTCAGAGGGAGTGACC+AGG | + | chr3_3:81515644-81515663 | Msa0477350:CDS | 45.0% | |
| ATCACCTGGGTAGAAATTCC+TGG | - | chr3_3:81515665-81515684 | None:intergenic | 45.0% | |
| TCAGGGAAAAGGTCAACAGA+GGG | - | chr3_3:81515812-81515831 | None:intergenic | 45.0% | |
| TTCAGGGAAAAGGTCAACAG+AGG | - | chr3_3:81515813-81515832 | None:intergenic | 45.0% | |
| ATGGTGGTTCCCATGGAATG+GGG | - | chr3_3:81512603-81512622 | None:intergenic | 50.0% | |
| ! | GATGGTGGTTCCCATGGAAT+GGG | - | chr3_3:81512604-81512623 | None:intergenic | 50.0% |
| !! | TGATGGTGGTTCCCATGGAA+TGG | - | chr3_3:81512605-81512624 | None:intergenic | 50.0% |
| TCCATGGGAACCACCATCAT+CGG | + | chr3_3:81512606-81512625 | Msa0477350:CDS | 50.0% | |
| ! | GTAGGTAACACCGATGATGG+TGG | - | chr3_3:81512619-81512638 | None:intergenic | 50.0% |
| !! | ATCGGTGTTACCTACAACGG+CGG | + | chr3_3:81512624-81512643 | Msa0477350:CDS | 50.0% |
| AATGTCTACGTCTGTCGCTC+TGG | + | chr3_3:81512818-81512837 | Msa0477350:CDS | 50.0% | |
| TTTGCAGGCTGCAGATTCTC+AGG | + | chr3_3:81513325-81513344 | Msa0477350:intron | 50.0% | |
| AAGCCACTTACGTGTGTTGG+TGG | - | chr3_3:81513379-81513398 | None:intergenic | 50.0% | |
| TGGACAACCTGCAACAGTCA+AGG | + | chr3_3:81513535-81513554 | Msa0477350:CDS | 50.0% | |
| GCAGCCTATCAGCAATTGCT+TGG | - | chr3_3:81514370-81514389 | None:intergenic | 50.0% | |
| TGCAGGTCTCGTGGTCAAAT+TGG | + | chr3_3:81514877-81514896 | Msa0477350:intron | 50.0% | |
| CCATACCTCAGCTTCATCCT+TGG | - | chr3_3:81515089-81515108 | None:intergenic | 50.0% | |
| CCAAGGATGAAGCTGAGGTA+TGG | + | chr3_3:81515086-81515105 | Msa0477350:intron | 50.0% | |
| GGATTTGGAAGGGAAGGCTT+TGG | - | chr3_3:81515376-81515395 | None:intergenic | 50.0% | |
| TCACTTGCCATTGCTCGTGA+TGG | + | chr3_3:81515490-81515509 | Msa0477350:CDS | 50.0% | |
| ACTAGCACCATCACGAGCAA+TGG | - | chr3_3:81515500-81515519 | None:intergenic | 50.0% | |
| ! | ATTGCTCGTGATGGTGCTAG+TGG | + | chr3_3:81515499-81515518 | Msa0477350:CDS | 50.0% |
| GTGACCAGGAATTTCTACCC+AGG | + | chr3_3:81515658-81515677 | Msa0477350:CDS | 50.0% | |
| !! | ACCGATGATGGTGGTTCCCA+TGG | - | chr3_3:81512610-81512629 | None:intergenic | 55.0% |
| AAGAACAACGCCGCCGTTGT+AGG | - | chr3_3:81512637-81512656 | None:intergenic | 55.0% | |
| TACAACGGCGGCGTTGTTCT+TGG | + | chr3_3:81512636-81512655 | Msa0477350:CDS | 55.0% | |
| ! | CTACGTCTGTCGCTCTGGAT+CGG | + | chr3_3:81512823-81512842 | Msa0477350:CDS | 55.0% |
| ! | CCACTTACGTGTGTTGGTGG+AGG | - | chr3_3:81513376-81513395 | None:intergenic | 55.0% |
| CCTCCACCAACACACGTAAG+TGG | + | chr3_3:81513373-81513392 | Msa0477350:intron | 55.0% | |
| GCAGCAACCTTGACTGTTGC+AGG | - | chr3_3:81513545-81513564 | None:intergenic | 55.0% | |
| GGTGGTTGGGACAAGTACGA+AGG | + | chr3_3:81514029-81514048 | Msa0477350:CDS | 55.0% | |
| GGTTGGGACAAGTACGAAGG+TGG | + | chr3_3:81514032-81514051 | Msa0477350:CDS | 55.0% | |
| GGAGGCTCACAACTCATTGC+TGG | + | chr3_3:81515711-81515730 | Msa0477350:CDS | 55.0% | |
| !! | ACCAGTGCTGGTTCGGGAGT+CGG | - | chr3_3:81512664-81512683 | None:intergenic | 60.0% |
| ! | GCTCGTGATGGTGCTAGTGG+CGG | + | chr3_3:81515502-81515521 | Msa0477350:CDS | 60.0% |
| ! | GCCGACTCCCGAACCAGCAC+TGG | + | chr3_3:81512660-81512679 | Msa0477350:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 81512462 | 81516009 | 81512462 | ID=Msa0477350;Name=Msa0477350 |
| chr3_3 | mRNA | 81512462 | 81516009 | 81512462 | ID=Msa0477350-mRNA-1;Parent=Msa0477350;Name=Msa0477350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=114|1|1|1|1|1|8|241|232 |
| chr3_3 | exon | 81512462 | 81512681 | 81512462 | ID=Msa0477350-mRNA-1:exon:22505;Parent=Msa0477350-mRNA-1 |
| chr3_3 | exon | 81512768 | 81512844 | 81512768 | ID=Msa0477350-mRNA-1:exon:22506;Parent=Msa0477350-mRNA-1 |
| chr3_3 | exon | 81513332 | 81513387 | 81513332 | ID=Msa0477350-mRNA-1:exon:22507;Parent=Msa0477350-mRNA-1 |
| chr3_3 | exon | 81513526 | 81513598 | 81513526 | ID=Msa0477350-mRNA-1:exon:22508;Parent=Msa0477350-mRNA-1 |
| chr3_3 | exon | 81514002 | 81514113 | 81514002 | ID=Msa0477350-mRNA-1:exon:22509;Parent=Msa0477350-mRNA-1 |
| chr3_3 | exon | 81515029 | 81515102 | 81515029 | ID=Msa0477350-mRNA-1:exon:22510;Parent=Msa0477350-mRNA-1 |
| chr3_3 | exon | 81515469 | 81515543 | 81515469 | ID=Msa0477350-mRNA-1:exon:22511;Parent=Msa0477350-mRNA-1 |
| chr3_3 | exon | 81515643 | 81516009 | 81515643 | ID=Msa0477350-mRNA-1:exon:22512;Parent=Msa0477350-mRNA-1 |
| chr3_3 | five_prime_UTR | 81512462 | 81512575 | 81512462 | ID=Msa0477350-mRNA-1:five_prime_utr;Parent=Msa0477350-mRNA-1 |
| chr3_3 | CDS | 81512576 | 81512681 | 81512576 | ID=Msa0477350-mRNA-1:cds;Parent=Msa0477350-mRNA-1 |
| chr3_3 | CDS | 81512768 | 81512844 | 81512768 | ID=Msa0477350-mRNA-1:cds;Parent=Msa0477350-mRNA-1 |
| chr3_3 | CDS | 81513332 | 81513387 | 81513332 | ID=Msa0477350-mRNA-1:cds;Parent=Msa0477350-mRNA-1 |
| chr3_3 | CDS | 81513526 | 81513598 | 81513526 | ID=Msa0477350-mRNA-1:cds;Parent=Msa0477350-mRNA-1 |
| chr3_3 | CDS | 81514002 | 81514113 | 81514002 | ID=Msa0477350-mRNA-1:cds;Parent=Msa0477350-mRNA-1 |
| chr3_3 | CDS | 81515029 | 81515102 | 81515029 | ID=Msa0477350-mRNA-1:cds;Parent=Msa0477350-mRNA-1 |
| chr3_3 | CDS | 81515469 | 81515543 | 81515469 | ID=Msa0477350-mRNA-1:cds;Parent=Msa0477350-mRNA-1 |
| chr3_3 | CDS | 81515643 | 81515768 | 81515643 | ID=Msa0477350-mRNA-1:cds;Parent=Msa0477350-mRNA-1 |
| chr3_3 | three_prime_UTR | 81515769 | 81516009 | 81515769 | ID=Msa0477350-mRNA-1:three_prime_utr;Parent=Msa0477350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
