Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477310 | XP_003603570.1 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.68e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477310 | sp|Q8LD27|PSB6_ARATH | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.39e-149 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477310 | B7FGZ8 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 8.01e-170 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023440 | Msa0477310 | 0.830829 | 2.355397e-55 | -8.615850e-47 |
| Msa0031520 | Msa0477310 | 0.800136 | 1.659998e-48 | -8.615850e-47 |
| Msa0477310 | Msa0477350 | 0.908783 | 1.171856e-81 | -8.615850e-47 |
| Msa0477310 | Msa0680240 | 0.808134 | 3.595897e-50 | -8.615850e-47 |
| Msa0477310 | Msa0804810 | 0.800606 | 1.332109e-48 | -8.615850e-47 |
| Msa0477310 | Msa1349100 | 0.816219 | 6.190406e-52 | -8.615850e-47 |
| Msa0254940 | Msa0477310 | 0.810937 | 8.991256e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477310 | MtrunA17_Chr3g0139211 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.54e-173 | 476 |
| Msa0477310 | MtrunA17_Chr7g0226711 | 31.282 | 195 | 131 | 2 | 1 | 193 | 24 | 217 | 9.51e-29 | 109 |
| Msa0477310 | MtrunA17_Chr7g0228681 | 30.928 | 194 | 131 | 2 | 1 | 192 | 24 | 216 | 1.88e-28 | 108 |
| Msa0477310 | MtrunA17_Chr3g0116161 | 31.351 | 185 | 125 | 2 | 13 | 196 | 54 | 237 | 1.74e-21 | 90.1 |
| Msa0477310 | MtrunA17_Chr5g0435161 | 27.273 | 209 | 126 | 4 | 13 | 201 | 15 | 217 | 2.52e-16 | 75.1 |
| Msa0477310 | MtrunA17_Chr2g0328831 | 27.273 | 209 | 126 | 4 | 13 | 201 | 15 | 217 | 1.15e-15 | 73.2 |
| Msa0477310 | MtrunA17_Chr5g0394931 | 26.087 | 161 | 117 | 1 | 15 | 173 | 3 | 163 | 1.51e-11 | 61.6 |
| Msa0477310 | MtrunA17_Chr3g0138711 | 92.593 | 27 | 2 | 0 | 116 | 142 | 20 | 46 | 3.15e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477310 | AT4G31300.3 | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.41e-150 | 418 |
| Msa0477310 | AT4G31300.1 | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.41e-150 | 418 |
| Msa0477310 | AT4G31300.2 | 87.826 | 230 | 25 | 2 | 4 | 230 | 3 | 232 | 4.53e-149 | 414 |
| Msa0477310 | AT5G40580.1 | 34.254 | 181 | 118 | 1 | 13 | 193 | 39 | 218 | 2.06e-29 | 111 |
| Msa0477310 | AT5G40580.2 | 34.254 | 181 | 118 | 1 | 13 | 193 | 39 | 218 | 2.06e-29 | 111 |
| Msa0477310 | AT3G27430.2 | 33.702 | 181 | 119 | 1 | 13 | 193 | 39 | 218 | 7.35e-29 | 110 |
| Msa0477310 | AT3G27430.1 | 33.889 | 180 | 118 | 1 | 13 | 192 | 39 | 217 | 1.11e-28 | 109 |
| Msa0477310 | AT5G40580.4 | 33.529 | 170 | 112 | 1 | 24 | 193 | 44 | 212 | 3.18e-25 | 100 |
| Msa0477310 | AT5G40580.3 | 33.529 | 170 | 112 | 1 | 24 | 193 | 44 | 212 | 3.18e-25 | 100 |
| Msa0477310 | AT3G27430.3 | 32.941 | 170 | 113 | 1 | 24 | 193 | 44 | 212 | 9.82e-25 | 99.0 |
| Msa0477310 | AT1G13060.1 | 31.937 | 191 | 128 | 2 | 10 | 199 | 54 | 243 | 2.65e-24 | 97.8 |
| Msa0477310 | AT3G26340.1 | 30.851 | 188 | 128 | 2 | 13 | 199 | 57 | 243 | 1.11e-21 | 90.9 |
| Msa0477310 | AT1G13060.3 | 28.372 | 215 | 128 | 3 | 10 | 199 | 54 | 267 | 3.29e-19 | 84.7 |
| Msa0477310 | AT1G13060.2 | 28.372 | 215 | 128 | 3 | 10 | 199 | 54 | 267 | 3.29e-19 | 84.7 |
| Msa0477310 | AT3G60820.1 | 25.366 | 205 | 127 | 4 | 13 | 197 | 15 | 213 | 1.47e-13 | 67.8 |
| Msa0477310 | AT3G60820.3 | 25.366 | 205 | 127 | 4 | 13 | 197 | 15 | 213 | 1.47e-13 | 67.8 |
| Msa0477310 | AT4G14800.1 | 24.845 | 161 | 119 | 1 | 15 | 173 | 3 | 163 | 9.24e-11 | 59.7 |
Find 93 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGACCTTGTCCATGTTTC+TGG | 0.138949 | 3_3:+81454004 | None:intergenic |
| TACGAAGGTGGTCAGATTTA+TGG | 0.196345 | 3_3:-81452529 | Msa0477310:CDS |
| CATCCTCATGTTGTGTACTA+TGG | 0.245686 | 3_3:-81450682 | Msa0477310:three_prime_UTR |
| CTTCATATGTTCATTGGCTC+TGG | 0.254783 | 3_3:+81450827 | None:intergenic |
| TACAACGGCGGCGTTGTTCT+TGG | 0.277415 | 3_3:-81453936 | Msa0477310:CDS |
| AACTCATTGCTGGACATTCT+TGG | 0.313902 | 3_3:-81450854 | Msa0477310:CDS |
| CAATGAACATATGAAGAAAC+TGG | 0.327497 | 3_3:-81450820 | Msa0477310:exon |
| GCAGCAACCTTGACTGTTGC+AGG | 0.328240 | 3_3:+81453031 | None:intergenic |
| TGGCAGAATAACTTACAAAC+TGG | 0.333500 | 3_3:-81452577 | Msa0477310:intron |
| GTGTAATTGATTATATCTTT+TGG | 0.337229 | 3_3:-81450727 | Msa0477310:three_prime_UTR |
| AGTTATTACCAGTGCTGGTT+CGG | 0.340791 | 3_3:+81453904 | None:intergenic |
| TTCATATGTTCATTGGCTCT+GGG | 0.365565 | 3_3:+81450828 | None:intergenic |
| TCCAGTTCATCATGCCATAT+TGG | 0.366769 | 3_3:+81450884 | None:intergenic |
| TCCAATATGGCATGATGAAC+TGG | 0.367474 | 3_3:-81450885 | Msa0477310:CDS |
| GCAACAGGATCTAGTCAAAA+AGG | 0.375037 | 3_3:-81451113 | Msa0477310:intron |
| CAGTTTCTTCATATGTTCAT+TGG | 0.379854 | 3_3:+81450821 | None:intergenic |
| AGGTTGCTGCAAACCTTGTT+CGG | 0.383622 | 3_3:-81453018 | Msa0477310:CDS |
| AATTGAGGGTGTAGAAGTTA+AGG | 0.385628 | 3_3:+81454085 | None:intergenic |
| TTACAAACTGGGTTAATTGT+TGG | 0.391047 | 3_3:-81452565 | Msa0477310:CDS |
| GTTATTACCAGTGCTGGTTC+GGG | 0.405581 | 3_3:+81453905 | None:intergenic |
| TGGGTTAATTGTTGGTGGTT+GGG | 0.415254 | 3_3:-81452557 | Msa0477310:CDS |
| GGAGGCTCACAACTCATTGC+TGG | 0.419158 | 3_3:-81450864 | Msa0477310:CDS |
| TCATACCGTCTTTCCATGCT+TGG | 0.420597 | 3_3:+81451512 | None:intergenic |
| TTTGCAGGCTGCAGATTCTC+AGG | 0.422283 | 3_3:-81453248 | Msa0477310:intron |
| AATGTCTACGTCTGTCGCTC+TGG | 0.427619 | 3_3:-81453755 | Msa0477310:CDS |
| AAGAACAACGCCGCCGTTGT+AGG | 0.434923 | 3_3:+81453938 | None:intergenic |
| TCTGGGTCCAGTTACTTGTA+TGG | 0.446754 | 3_3:-81451544 | Msa0477310:CDS |
| ACAAATTCGATAAATAGTTC+AGG | 0.448665 | 3_3:+81450748 | None:intergenic |
| ATCACCTGGGTAGAAATTCC+TGG | 0.453082 | 3_3:+81450913 | None:intergenic |
| AAAGAAGTTATTACCAGTGC+TGG | 0.457197 | 3_3:+81453899 | None:intergenic |
| GATGGTGGTTCCCATGGAAT+GGG | 0.459908 | 3_3:+81453971 | None:intergenic |
| CTGGGTTAATTGTTGGTGGT+TGG | 0.462258 | 3_3:-81452558 | Msa0477310:CDS |
| CAGGTGATCAACTTCCAATA+TGG | 0.465504 | 3_3:-81450898 | Msa0477310:CDS |
| TGTAGAAGTTAAGGGGTACT+TGG | 0.470472 | 3_3:+81454094 | None:intergenic |
| ATTGAGGGTGTAGAAGTTAA+GGG | 0.473380 | 3_3:+81454086 | None:intergenic |
| CGATAAATAGTTCAGGGAAA+AGG | 0.481713 | 3_3:+81450755 | None:intergenic |
| CAGATTTATGGAGTTCCTCT+AGG | 0.481821 | 3_3:-81452517 | Msa0477310:CDS |
| TTTCAATGCTCCCCATTCCA+TGG | 0.486263 | 3_3:-81453982 | Msa0477310:CDS |
| CAAATTCGATAAATAGTTCA+GGG | 0.488124 | 3_3:+81450749 | None:intergenic |
| CAAATACCTCCAATAGCAAA+AGG | 0.491340 | 3_3:+81452475 | None:intergenic |
| CCATACCTCAGCTTCATCCT+TGG | 0.493435 | 3_3:+81451489 | None:intergenic |
| ACCAGTGCTGGTTCGGGAGT+CGG | 0.493835 | 3_3:+81453911 | None:intergenic |
| ACCGATGATGGTGGTTCCCA+TGG | 0.496891 | 3_3:+81453965 | None:intergenic |
| TGATGGTGGTTCCCATGGAA+TGG | 0.497886 | 3_3:+81453970 | None:intergenic |
| GCCGACTCCCGAACCAGCAC+TGG | 0.502146 | 3_3:-81453912 | Msa0477310:intron |
| ATCCTCATGTTGTGTACTAT+GGG | 0.504406 | 3_3:-81450681 | Msa0477310:three_prime_UTR |
| TATAAACTGAATCGAATTGA+GGG | 0.510826 | 3_3:+81454071 | None:intergenic |
| TTATAAACTGAATCGAATTG+AGG | 0.513071 | 3_3:+81454070 | None:intergenic |
| CTACGTCTGTCGCTCTGGAT+CGG | 0.525400 | 3_3:-81453750 | Msa0477310:intron |
| GATGTCTTACAATGACTGTT+CGG | 0.526951 | 3_3:+81451044 | None:intergenic |
| TTCAATGCTCCCCATTCCAT+GGG | 0.536391 | 3_3:-81453981 | Msa0477310:CDS |
| CAAACTGGGTTAATTGTTGG+TGG | 0.536602 | 3_3:-81452562 | Msa0477310:CDS |
| GCCAGAGAGAAGAAGAAAAG+AGG | 0.536867 | 3_3:+81454043 | None:intergenic |
| AAGCCACTTACGTGTGTTGG+TGG | 0.540050 | 3_3:+81453197 | None:intergenic |
| CATATTGGAAGTTGATCACC+TGG | 0.547295 | 3_3:+81450899 | None:intergenic |
| GAGAGAAGAAGAAAAGAGGC+TGG | 0.549204 | 3_3:+81454047 | None:intergenic |
| GGCAGAATAACTTACAAACT+GGG | 0.553451 | 3_3:-81452576 | Msa0477310:intron |
| TCACTTGCCATTGCTCGTGA+TGG | 0.553661 | 3_3:-81451085 | Msa0477310:CDS |
| TCATATGTTCATTGGCTCTG+GGG | 0.561140 | 3_3:+81450829 | None:intergenic |
| CCACTTACGTGTGTTGGTGG+AGG | 0.564272 | 3_3:+81453200 | None:intergenic |
| ATCGGTGTTACCTACAACGG+CGG | 0.569422 | 3_3:-81453948 | Msa0477310:CDS |
| TCCATGGGAACCACCATCAT+CGG | 0.570798 | 3_3:-81453966 | Msa0477310:CDS |
| GTTGTAGGTAACACCGATGA+TGG | 0.577085 | 3_3:+81453953 | None:intergenic |
| ACTAGCACCATCACGAGCAA+TGG | 0.588426 | 3_3:+81451078 | None:intergenic |
| TTTGACCAAGCATGGAAAGA+CGG | 0.597804 | 3_3:-81451517 | Msa0477310:CDS |
| AATAAGCCACTTACGTGTGT+TGG | 0.608764 | 3_3:+81453194 | None:intergenic |
| GAATCAATTTACCAGAAACA+TGG | 0.612730 | 3_3:-81454015 | Msa0477310:exon |
| TCCCTTGCAGATAAATTCAG+AGG | 0.616499 | 3_3:-81450942 | Msa0477310:intron |
| ATTGCTCGTGATGGTGCTAG+TGG | 0.618953 | 3_3:-81451076 | Msa0477310:CDS |
| TAAATTCAGAGGGAGTGACC+AGG | 0.622381 | 3_3:-81450931 | Msa0477310:CDS |
| CCCTTGCAGATAAATTCAGA+GGG | 0.623795 | 3_3:-81450941 | Msa0477310:intron |
| TACCCATAGTACACAACATG+AGG | 0.625208 | 3_3:+81450679 | None:intergenic |
| TGGACAACCTGCAACAGTCA+AGG | 0.625376 | 3_3:-81453038 | Msa0477310:CDS |
| TCAGGGAAAAGGTCAACAGA+GGG | 0.626144 | 3_3:+81450766 | None:intergenic |
| TATATGCGAGAAGCCGAACA+AGG | 0.628109 | 3_3:+81453005 | None:intergenic |
| ATTTATGGAGTTCCTCTAGG+TGG | 0.628981 | 3_3:-81452514 | Msa0477310:CDS |
| TGTACAATTGTTCCACCTAG+AGG | 0.635768 | 3_3:+81452502 | None:intergenic |
| ATGGTGGTTCCCATGGAATG+GGG | 0.644231 | 3_3:+81453972 | None:intergenic |
| TTGAGGGTGTAGAAGTTAAG+GGG | 0.644793 | 3_3:+81454087 | None:intergenic |
| AATGAACATATGAAGAAACT+GGG | 0.650022 | 3_3:-81450819 | Msa0477310:exon |
| GCTCGTGATGGTGCTAGTGG+CGG | 0.657121 | 3_3:-81451073 | Msa0477310:CDS |
| GGTTGGGACAAGTACGAAGG+TGG | 0.663068 | 3_3:-81452541 | Msa0477310:CDS |
| ATCATCGGTGTTACCTACAA+CGG | 0.663396 | 3_3:-81453951 | Msa0477310:CDS |
| AATATGGCATGATGAACTGG+AGG | 0.666663 | 3_3:-81450882 | Msa0477310:CDS |
| ATGGAAAGACGGTATGACCA+AGG | 0.668497 | 3_3:-81451506 | Msa0477310:CDS |
| TATGACCAAGGATGAAGCTG+AGG | 0.674602 | 3_3:-81451494 | Msa0477310:intron |
| TTCAGGGAAAAGGTCAACAG+AGG | 0.676661 | 3_3:+81450765 | None:intergenic |
| GTGACCAGGAATTTCTACCC+AGG | 0.683522 | 3_3:-81450917 | Msa0477310:CDS |
| GTAGGTAACACCGATGATGG+TGG | 0.683839 | 3_3:+81453956 | None:intergenic |
| GGTGGTTGGGACAAGTACGA+AGG | 0.709093 | 3_3:-81452544 | Msa0477310:CDS |
| GCTTCTCGCATATAACAACA+AGG | 0.720146 | 3_3:-81452996 | Msa0477310:intron |
| ATTTACCAGAAACATGGACA+AGG | 0.720322 | 3_3:-81454009 | Msa0477310:exon |
| ATATTGGAAGTTGATCACCT+GGG | 0.757859 | 3_3:+81450900 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATATATAGTCATTTA+GGG | - | chr3_3:81453330-81453349 | Msa0477310:intron | 10.0% |
| !!! | TGAATTTGTAATTCATTTTT+TGG | - | chr3_3:81451099-81451118 | Msa0477310:CDS | 15.0% |
| !! | ATAAATACCTATAAACATAT+AGG | - | chr3_3:81451274-81451293 | Msa0477310:intron | 15.0% |
| !! | TAAATACCTATAAACATATA+GGG | - | chr3_3:81451275-81451294 | Msa0477310:intron | 15.0% |
| !! | TCTCAAATAAATTAAGTTTA+TGG | + | chr3_3:81451321-81451340 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAATGCTTTAGAA+AGG | + | chr3_3:81452884-81452903 | None:intergenic | 15.0% |
| !! | CATAATATATATAGTCATTT+AGG | - | chr3_3:81453329-81453348 | Msa0477310:intron | 15.0% |
| !!! | AGGTAAATTGATTTTGATTA+GGG | + | chr3_3:81450831-81450850 | None:intergenic | 20.0% |
| !!! | AAGGTAAATTGATTTTGATT+AGG | + | chr3_3:81450832-81450851 | None:intergenic | 20.0% |
| !!! | TTTGTAATTGTTGTTTCTAA+AGG | - | chr3_3:81451018-81451037 | Msa0477310:intron | 20.0% |
| !! | AAGAAATTGATTAAACTCAT+CGG | + | chr3_3:81451210-81451229 | None:intergenic | 20.0% |
| !! | AAATACCTATAAACATATAG+GGG | - | chr3_3:81451276-81451295 | Msa0477310:intron | 20.0% |
| !!! | GTTTTATTTCAAGATTTTGA+AGG | + | chr3_3:81451843-81451862 | None:intergenic | 20.0% |
| !! | TATATTTCAAGAGAATTACT+TGG | - | chr3_3:81451871-81451890 | Msa0477310:intron | 20.0% |
| !!! | TAATACACATTAACTTGAAA+AGG | + | chr3_3:81451952-81451971 | None:intergenic | 20.0% |
| !! | TGATGTAAATTTATTCTCAT+TGG | - | chr3_3:81452101-81452120 | Msa0477310:intron | 20.0% |
| !! | TTATGAATACAATCTCTATT+AGG | - | chr3_3:81452262-81452281 | Msa0477310:intron | 20.0% |
| !! | ATGAAAAGAAGAAAAGTAAA+AGG | - | chr3_3:81452547-81452566 | Msa0477310:CDS | 20.0% |
| !! | TGAAAAGAAGAAAAGTAAAA+GGG | - | chr3_3:81452548-81452567 | Msa0477310:CDS | 20.0% |
| !! | TGTAAGAATTATAGTAACTT+CGG | + | chr3_3:81452582-81452601 | None:intergenic | 20.0% |
| !! | TTTGCATAGATAAAAAATCT+AGG | + | chr3_3:81453032-81453051 | None:intergenic | 20.0% |
| !!! | GTGTAATTGATTATATCTTT+TGG | - | chr3_3:81453971-81453990 | Msa0477310:CDS | 20.0% |
| !!! | TTAAGATGATGATTTTTAAG+TGG | + | chr3_3:81454101-81454120 | None:intergenic | 20.0% |
| ! | TATAAACTGAATCGAATTGA+GGG | + | chr3_3:81450630-81450649 | None:intergenic | 25.0% |
| ! | TTATAAACTGAATCGAATTG+AGG | + | chr3_3:81450631-81450650 | None:intergenic | 25.0% |
| ! | CGAATCGAAAATTCAAAAAA+GGG | + | chr3_3:81450856-81450875 | None:intergenic | 25.0% |
| ! | TCGAATCGAAAATTCAAAAA+AGG | + | chr3_3:81450857-81450876 | None:intergenic | 25.0% |
| ! | TTCTTTCTCTATCTCTAATT+AGG | - | chr3_3:81450976-81450995 | Msa0477310:intron | 25.0% |
| ! | TCTTTCTCTATCTCTAATTA+GGG | - | chr3_3:81450977-81450996 | Msa0477310:intron | 25.0% |
| ! | TATATAAACTGTAGCTATCA+TGG | + | chr3_3:81451134-81451153 | None:intergenic | 25.0% |
| ! | AAAATCTTGAATAAGATTCC+AGG | + | chr3_3:81451157-81451176 | None:intergenic | 25.0% |
| !!! | AAAGATGAGATTTTTGTTTG+TGG | - | chr3_3:81451407-81451426 | Msa0477310:intron | 25.0% |
| !!! | ATCAAACTATTTCTTTTTGC+AGG | - | chr3_3:81451435-81451454 | Msa0477310:intron | 25.0% |
| !! | CTTTTTCTTGTTAATTAGAG+TGG | - | chr3_3:81451738-81451757 | Msa0477310:intron | 25.0% |
| ! | ACTTCTATTAACATTGTCAA+CGG | + | chr3_3:81451903-81451922 | None:intergenic | 25.0% |
| ! | TCTAGATCAACTTTAGTAAA+AGG | + | chr3_3:81452417-81452436 | None:intergenic | 25.0% |
| ! | GATGTTAGAAAATACTTATC+AGG | + | chr3_3:81452612-81452631 | None:intergenic | 25.0% |
| ! | CAATAAATCTAGCATCAAAA+AGG | + | chr3_3:81452643-81452662 | None:intergenic | 25.0% |
| !! | CTTTTTGATGCTAGATTTAT+TGG | - | chr3_3:81452641-81452660 | Msa0477310:intron | 25.0% |
| ! | TATTTACAGTTATATTGACG+TGG | - | chr3_3:81452676-81452695 | Msa0477310:intron | 25.0% |
| ! | TATGCTTTCTCTATAACTAA+AGG | + | chr3_3:81452763-81452782 | None:intergenic | 25.0% |
| !!! | TGTTGAATGTGAATTTGTTA+AGG | - | chr3_3:81452954-81452973 | Msa0477310:intron | 25.0% |
| !! | TGCTTTCTTTTATAAACCTA+TGG | - | chr3_3:81453105-81453124 | Msa0477310:intron | 25.0% |
| !!! | TACGTGAGTTGTTTTTTTAT+AGG | - | chr3_3:81453130-81453149 | Msa0477310:intron | 25.0% |
| !!! | AGTTGTTTTTTTATAGGATC+TGG | - | chr3_3:81453136-81453155 | Msa0477310:intron | 25.0% |
| !!! | GTTGTTTTTTTATAGGATCT+GGG | - | chr3_3:81453137-81453156 | Msa0477310:intron | 25.0% |
| ! | AAAAAATCCATACAAGTAAC+TGG | + | chr3_3:81453164-81453183 | None:intergenic | 25.0% |
| !!! | TGATTTGTGTTTTAAAGACA+AGG | - | chr3_3:81453685-81453704 | Msa0477310:intron | 25.0% |
| ! | AATGAACATATGAAGAAACT+GGG | - | chr3_3:81453879-81453898 | Msa0477310:intron | 25.0% |
| ! | CAAATTCGATAAATAGTTCA+GGG | + | chr3_3:81453952-81453971 | None:intergenic | 25.0% |
| ! | ACAAATTCGATAAATAGTTC+AGG | + | chr3_3:81453953-81453972 | None:intergenic | 25.0% |
| GAATCAATTTACCAGAAACA+TGG | - | chr3_3:81450683-81450702 | Msa0477310:three_prime_UTR | 30.0% | |
| CGAAAATTCAAAAAAGGGAA+AGG | + | chr3_3:81450851-81450870 | None:intergenic | 30.0% | |
| !!! | TTAGGGTTTAGCGTTTTTTT+AGG | - | chr3_3:81450994-81451013 | Msa0477310:intron | 30.0% |
| !!! | TAGGGTTTAGCGTTTTTTTA+GGG | - | chr3_3:81450995-81451014 | Msa0477310:intron | 30.0% |
| ! | ATGATTGAGATTTGAGCTTT+TGG | - | chr3_3:81451062-81451081 | Msa0477310:CDS | 30.0% |
| ATAGCTACAGTTTATATACC+TGG | - | chr3_3:81451136-81451155 | Msa0477310:intron | 30.0% | |
| TCATCGGAGAATAATGTTAT+TGG | + | chr3_3:81451194-81451213 | None:intergenic | 30.0% | |
| TATTTATGCCCAGGTTAAAT+GGG | + | chr3_3:81451257-81451276 | None:intergenic | 30.0% | |
| TTATTTATGCCCAGGTTAAA+TGG | + | chr3_3:81451258-81451277 | None:intergenic | 30.0% | |
| ATAGGTATTTATTTATGCCC+AGG | + | chr3_3:81451266-81451285 | None:intergenic | 30.0% | |
| TAAAGCCCCTATATGTTTAT+AGG | + | chr3_3:81451284-81451303 | None:intergenic | 30.0% | |
| ! | ATTTTATGCAGAATTCAGCT+TGG | - | chr3_3:81451640-81451659 | Msa0477310:intron | 30.0% |
| !!! | ACTAGCATTTTGGAATTTAG+TGG | + | chr3_3:81451777-81451796 | None:intergenic | 30.0% |
| !! | CAATTGAGTTGATGATTAAC+AGG | - | chr3_3:81451997-81452016 | Msa0477310:intron | 30.0% |
| TGTATGTCCACTTAAGTATT+TGG | - | chr3_3:81452075-81452094 | Msa0477310:intron | 30.0% | |
| TTACAAACTGGGTTAATTGT+TGG | - | chr3_3:81452133-81452152 | Msa0477310:intron | 30.0% | |
| GATGTCAAATCTTGATATCA+AGG | + | chr3_3:81452346-81452365 | None:intergenic | 30.0% | |
| TGATATCAAGATTTGACATC+TGG | - | chr3_3:81452346-81452365 | Msa0477310:intron | 30.0% | |
| AAACTTGTGTAAACAAGAGA+TGG | - | chr3_3:81452454-81452473 | Msa0477310:intron | 30.0% | |
| CTCTCTCTTTCAGTTTAATA+TGG | - | chr3_3:81452524-81452543 | Msa0477310:CDS | 30.0% | |
| ! | ACATGATTGGTTCATATACA+TGG | - | chr3_3:81452706-81452725 | Msa0477310:intron | 30.0% |
| GGTTCATATACATGGATAAA+TGG | - | chr3_3:81452714-81452733 | Msa0477310:intron | 30.0% | |
| CATGGATAAATGGAAAAACA+TGG | - | chr3_3:81452724-81452743 | Msa0477310:intron | 30.0% | |
| TAACTAAAGGTTTCCATGAA+AGG | + | chr3_3:81452750-81452769 | None:intergenic | 30.0% | |
| ! | TAGCATAAGAGTATAGTATG+GGG | + | chr3_3:81452791-81452810 | None:intergenic | 30.0% |
| ! | CTAGCATAAGAGTATAGTAT+GGG | + | chr3_3:81452792-81452811 | None:intergenic | 30.0% |
| ! | ACTAGCATAAGAGTATAGTA+TGG | + | chr3_3:81452793-81452812 | None:intergenic | 30.0% |
| ATAAAGACAGCACAATACAA+GGG | + | chr3_3:81452823-81452842 | None:intergenic | 30.0% | |
| AATAAAGACAGCACAATACA+AGG | + | chr3_3:81452824-81452843 | None:intergenic | 30.0% | |
| ! | TTGTGCTGTCTTTATTTAAC+TGG | - | chr3_3:81452828-81452847 | Msa0477310:intron | 30.0% |
| ATCCAAAGAATAGCGTTAAA+GGG | + | chr3_3:81453081-81453100 | None:intergenic | 30.0% | |
| AATCCAAAGAATAGCGTTAA+AGG | + | chr3_3:81453082-81453101 | None:intergenic | 30.0% | |
| TTAGTTGTAGTTAGTTGTGT+TGG | - | chr3_3:81453271-81453290 | Msa0477310:intron | 30.0% | |
| ATTGAGATAGAAACCCTTAA+GGG | + | chr3_3:81453537-81453556 | None:intergenic | 30.0% | |
| !! | AGTGTATTTTTATGTGCAAC+AGG | - | chr3_3:81453570-81453589 | Msa0477310:intron | 30.0% |
| CAGTTTCTTCATATGTTCAT+TGG | + | chr3_3:81453880-81453899 | None:intergenic | 30.0% | |
| CAATGAACATATGAAGAAAC+TGG | - | chr3_3:81453878-81453897 | Msa0477310:intron | 30.0% | |
| !! | ATCTTTTGGTTAGATGTTGT+TGG | - | chr3_3:81453985-81454004 | Msa0477310:CDS | 30.0% |
| ! | ATTGAGGGTGTAGAAGTTAA+GGG | + | chr3_3:81450615-81450634 | None:intergenic | 35.0% |
| ! | AATTGAGGGTGTAGAAGTTA+AGG | + | chr3_3:81450616-81450635 | None:intergenic | 35.0% |
| ATTTACCAGAAACATGGACA+AGG | - | chr3_3:81450689-81450708 | Msa0477310:three_prime_UTR | 35.0% | |
| AAAGAAGTTATTACCAGTGC+TGG | + | chr3_3:81450802-81450821 | None:intergenic | 35.0% | |
| CTAATCTAAACTGAGCTTCA+AGG | - | chr3_3:81451360-81451379 | Msa0477310:intron | 35.0% | |
| AACAACAAGGTATGACTTTG+AGG | - | chr3_3:81451715-81451734 | Msa0477310:intron | 35.0% | |
| TTCCAAAATGCTAGTTGCAA+TGG | - | chr3_3:81451782-81451801 | Msa0477310:intron | 35.0% | |
| GTGACATTATGTCTTCTTGA+TGG | - | chr3_3:81452019-81452038 | Msa0477310:intron | 35.0% | |
| ATCAGAGCCAAATACTTAAG+TGG | + | chr3_3:81452085-81452104 | None:intergenic | 35.0% | |
| TGGCAGAATAACTTACAAAC+TGG | - | chr3_3:81452121-81452140 | Msa0477310:intron | 35.0% | |
| GGCAGAATAACTTACAAACT+GGG | - | chr3_3:81452122-81452141 | Msa0477310:intron | 35.0% | |
| CAAATACCTCCAATAGCAAA+AGG | + | chr3_3:81452226-81452245 | None:intergenic | 35.0% | |
| !! | TCCTAGCATCATTGATTCTT+GGG | + | chr3_3:81452391-81452410 | None:intergenic | 35.0% |
| !! | TTCCTAGCATCATTGATTCT+TGG | + | chr3_3:81452392-81452411 | None:intergenic | 35.0% |
| AAATCCAAGCAATTGCTGAT+AGG | - | chr3_3:81452488-81452507 | Msa0477310:CDS | 35.0% | |
| TGATGCTAGATTTATTGGAG+TGG | - | chr3_3:81452646-81452665 | Msa0477310:intron | 35.0% | |
| CAGTTATATTGACGTGGAAA+AGG | - | chr3_3:81452682-81452701 | Msa0477310:intron | 35.0% | |
| TAAAGACAGCACAATACAAG+GGG | + | chr3_3:81452822-81452841 | None:intergenic | 35.0% | |
| TGACTCAACTTTGTAGGAAA+AGG | - | chr3_3:81452912-81452931 | Msa0477310:intron | 35.0% | |
| TCAACTTTGTAGGAAAAGGT+TGG | - | chr3_3:81452916-81452935 | Msa0477310:intron | 35.0% | |
| ! | AAAAGGTTGGTTCTTCCATT+GGG | - | chr3_3:81452929-81452948 | Msa0477310:intron | 35.0% |
| TTCACATTCAACATTCCCAA+TGG | + | chr3_3:81452947-81452966 | None:intergenic | 35.0% | |
| TACCCTTTAACGCTATTCTT+TGG | - | chr3_3:81453076-81453095 | Msa0477310:intron | 35.0% | |
| AAACAACTCACGTAAACCAT+AGG | + | chr3_3:81453124-81453143 | None:intergenic | 35.0% | |
| !!! | ATGGATTTTTTGACCAAGCA+TGG | - | chr3_3:81453173-81453192 | Msa0477310:intron | 35.0% |
| GTCTCTATTCTTGCAAAATG+AGG | - | chr3_3:81453232-81453251 | Msa0477310:CDS | 35.0% | |
| !!! | TGTGTTTGCGAGTTGATTTT+TGG | - | chr3_3:81453353-81453372 | Msa0477310:intron | 35.0% |
| !!! | TTTGCGAGTTGATTTTTGGA+GGG | - | chr3_3:81453357-81453376 | Msa0477310:intron | 35.0% |
| !! | TGATTTTTGGAGGGATTTGT+AGG | - | chr3_3:81453366-81453385 | Msa0477310:intron | 35.0% |
| !! | GATTTTTGGAGGGATTTGTA+GGG | - | chr3_3:81453367-81453386 | Msa0477310:intron | 35.0% |
| !! | TGTTTTTGCAAGTTGGGATT+TGG | + | chr3_3:81453514-81453533 | None:intergenic | 35.0% |
| !!! | TAAGGGTGTTTTTGCAAGTT+GGG | + | chr3_3:81453520-81453539 | None:intergenic | 35.0% |
| !!! | TTAAGGGTGTTTTTGCAAGT+TGG | + | chr3_3:81453521-81453540 | None:intergenic | 35.0% |
| AACTTGCAAAAACACCCTTA+AGG | - | chr3_3:81453520-81453539 | Msa0477310:intron | 35.0% | |
| ACTTGCAAAAACACCCTTAA+GGG | - | chr3_3:81453521-81453540 | Msa0477310:intron | 35.0% | |
| GATTGAGATAGAAACCCTTA+AGG | + | chr3_3:81453538-81453557 | None:intergenic | 35.0% | |
| GGTTTCTATCTCAATCCTTA+CGG | - | chr3_3:81453542-81453561 | Msa0477310:intron | 35.0% | |
| GATGTCTTACAATGACTGTT+CGG | + | chr3_3:81453657-81453676 | None:intergenic | 35.0% | |
| ! | ATATTGGAAGTTGATCACCT+GGG | + | chr3_3:81453801-81453820 | None:intergenic | 35.0% |
| !! | TTCATATGTTCATTGGCTCT+GGG | + | chr3_3:81453873-81453892 | None:intergenic | 35.0% |
| CGATAAATAGTTCAGGGAAA+AGG | + | chr3_3:81453946-81453965 | None:intergenic | 35.0% | |
| ATCCTCATGTTGTGTACTAT+GGG | - | chr3_3:81454017-81454036 | Msa0477310:exon | 35.0% | |
| !! | TGTAGAAGTTAAGGGGTACT+TGG | + | chr3_3:81450607-81450626 | None:intergenic | 40.0% |
| ! | TTGAGGGTGTAGAAGTTAAG+GGG | + | chr3_3:81450614-81450633 | None:intergenic | 40.0% |
| !! | ATCATCGGTGTTACCTACAA+CGG | - | chr3_3:81450747-81450766 | Msa0477310:three_prime_UTR | 40.0% |
| !! | AGTTATTACCAGTGCTGGTT+CGG | + | chr3_3:81450797-81450816 | None:intergenic | 40.0% |
| ATTCGATCTCTCTCACTTTC+AGG | - | chr3_3:81450871-81450890 | Msa0477310:CDS | 40.0% | |
| ! | GATTTTGTCAGATGCACGAT+TGG | + | chr3_3:81450908-81450927 | None:intergenic | 40.0% |
| TAAACTGTAGCTATCATGGC+TGG | + | chr3_3:81451130-81451149 | None:intergenic | 40.0% | |
| AAAAACCCTCCCATTTAACC+TGG | - | chr3_3:81451245-81451264 | Msa0477310:intron | 40.0% | |
| AAAACCCTCCCATTTAACCT+GGG | - | chr3_3:81451246-81451265 | Msa0477310:intron | 40.0% | |
| ! | GAGCTTCAAGGTATCAATGA+AGG | - | chr3_3:81451372-81451391 | Msa0477310:intron | 40.0% |
| AATAAGCCACTTACGTGTGT+TGG | + | chr3_3:81451507-81451526 | None:intergenic | 40.0% | |
| GCTTCTCGCATATAACAACA+AGG | - | chr3_3:81451702-81451721 | Msa0477310:intron | 40.0% | |
| ! | CACCATTGCAACTAGCATTT+TGG | + | chr3_3:81451787-81451806 | None:intergenic | 40.0% |
| CAAAATGCTAGTTGCAATGG+TGG | - | chr3_3:81451785-81451804 | Msa0477310:intron | 40.0% | |
| CAAACTGGGTTAATTGTTGG+TGG | - | chr3_3:81452136-81452155 | Msa0477310:intron | 40.0% | |
| !! | TGGGTTAATTGTTGGTGGTT+GGG | - | chr3_3:81452141-81452160 | Msa0477310:intron | 40.0% |
| TACGAAGGTGGTCAGATTTA+TGG | - | chr3_3:81452169-81452188 | Msa0477310:intron | 40.0% | |
| CAGATTTATGGAGTTCCTCT+AGG | - | chr3_3:81452181-81452200 | Msa0477310:intron | 40.0% | |
| ATTTATGGAGTTCCTCTAGG+TGG | - | chr3_3:81452184-81452203 | Msa0477310:intron | 40.0% | |
| TGTACAATTGTTCCACCTAG+AGG | + | chr3_3:81452199-81452218 | None:intergenic | 40.0% | |
| !! | GTACAGCAACCTTTTGCTAT+TGG | - | chr3_3:81452214-81452233 | Msa0477310:intron | 40.0% |
| TCCCAAGAATCAATGATGCT+AGG | - | chr3_3:81452387-81452406 | Msa0477310:intron | 40.0% | |
| TGGAAAAACATGGCCTTTCA+TGG | - | chr3_3:81452734-81452753 | Msa0477310:intron | 40.0% | |
| TACAAAGTTGAGTCAGCTAG+AGG | + | chr3_3:81452907-81452926 | None:intergenic | 40.0% | |
| ! | TCTAGCTGACTCAACTTTGT+AGG | - | chr3_3:81452906-81452925 | Msa0477310:intron | 40.0% |
| ! | GAAAAGGTTGGTTCTTCCAT+TGG | - | chr3_3:81452928-81452947 | Msa0477310:intron | 40.0% |
| !! | TGACTTGCTTGTCAATTTGC+AGG | - | chr3_3:81452983-81453002 | Msa0477310:intron | 40.0% |
| GAATAGCGTTAAAGGGTAAC+TGG | + | chr3_3:81453074-81453093 | None:intergenic | 40.0% | |
| TTTGACCAAGCATGGAAAGA+CGG | - | chr3_3:81453181-81453200 | Msa0477310:intron | 40.0% | |
| ! | TTGCAAAATGAGGTGTCTGT+TGG | - | chr3_3:81453242-81453261 | Msa0477310:CDS | 40.0% |
| !! | TGTAGTTAGTTGTGTTGGCT+TGG | - | chr3_3:81453276-81453295 | Msa0477310:intron | 40.0% |
| !!! | GTTTGCGAGTTGATTTTTGG+AGG | - | chr3_3:81453356-81453375 | Msa0477310:intron | 40.0% |
| ! | TTGCAAGTTGGGATTTGGAA+GGG | + | chr3_3:81453509-81453528 | None:intergenic | 40.0% |
| ! | TTTGCAAGTTGGGATTTGGA+AGG | + | chr3_3:81453510-81453529 | None:intergenic | 40.0% |
| AAAATACACTGTCAGCCGTA+AGG | + | chr3_3:81453560-81453579 | None:intergenic | 40.0% | |
| GCAACAGGATCTAGTCAAAA+AGG | - | chr3_3:81453585-81453604 | Msa0477310:intron | 40.0% | |
| CAAGGGATTCAAAATGAAGC+AGG | + | chr3_3:81453743-81453762 | None:intergenic | 40.0% | |
| TCCCTTGCAGATAAATTCAG+AGG | - | chr3_3:81453756-81453775 | Msa0477310:CDS | 40.0% | |
| CCCTCTGAATTTATCTGCAA+GGG | + | chr3_3:81453760-81453779 | None:intergenic | 40.0% | |
| CCCTTGCAGATAAATTCAGA+GGG | - | chr3_3:81453757-81453776 | Msa0477310:CDS | 40.0% | |
| TCCCTCTGAATTTATCTGCA+AGG | + | chr3_3:81453761-81453780 | None:intergenic | 40.0% | |
| ! | CATATTGGAAGTTGATCACC+TGG | + | chr3_3:81453802-81453821 | None:intergenic | 40.0% |
| CAGGTGATCAACTTCCAATA+TGG | - | chr3_3:81453800-81453819 | Msa0477310:CDS | 40.0% | |
| TCCAATATGGCATGATGAAC+TGG | - | chr3_3:81453813-81453832 | Msa0477310:intron | 40.0% | |
| TCCAGTTCATCATGCCATAT+TGG | + | chr3_3:81453817-81453836 | None:intergenic | 40.0% | |
| AATATGGCATGATGAACTGG+AGG | - | chr3_3:81453816-81453835 | Msa0477310:intron | 40.0% | |
| AACTCATTGCTGGACATTCT+TGG | - | chr3_3:81453844-81453863 | Msa0477310:intron | 40.0% | |
| !! | TCATATGTTCATTGGCTCTG+GGG | + | chr3_3:81453872-81453891 | None:intergenic | 40.0% |
| !! | CTTCATATGTTCATTGGCTC+TGG | + | chr3_3:81453874-81453893 | None:intergenic | 40.0% |
| CATCCTCATGTTGTGTACTA+TGG | - | chr3_3:81454016-81454035 | Msa0477310:exon | 40.0% | |
| TACCCATAGTACACAACATG+AGG | + | chr3_3:81454022-81454041 | None:intergenic | 40.0% | |
| GAGAGAAGAAGAAAAGAGGC+TGG | + | chr3_3:81450654-81450673 | None:intergenic | 45.0% | |
| ! | GCCTCTTTTCTTCTTCTCTC+TGG | - | chr3_3:81450654-81450673 | Msa0477310:three_prime_UTR | 45.0% |
| GCCAGAGAGAAGAAGAAAAG+AGG | + | chr3_3:81450658-81450677 | None:intergenic | 45.0% | |
| ATCGACCTTGTCCATGTTTC+TGG | + | chr3_3:81450697-81450716 | None:intergenic | 45.0% | |
| TTTCAATGCTCCCCATTCCA+TGG | - | chr3_3:81450716-81450735 | Msa0477310:three_prime_UTR | 45.0% | |
| TTCAATGCTCCCCATTCCAT+GGG | - | chr3_3:81450717-81450736 | Msa0477310:three_prime_UTR | 45.0% | |
| GTTGTAGGTAACACCGATGA+TGG | + | chr3_3:81450748-81450767 | None:intergenic | 45.0% | |
| !! | GTTATTACCAGTGCTGGTTC+GGG | + | chr3_3:81450796-81450815 | None:intergenic | 45.0% |
| TATGCCCAGGTTAAATGGGA+GGG | + | chr3_3:81451253-81451272 | None:intergenic | 45.0% | |
| TTATGCCCAGGTTAAATGGG+AGG | + | chr3_3:81451254-81451273 | None:intergenic | 45.0% | |
| AGGTTGCTGCAAACCTTGTT+CGG | - | chr3_3:81451680-81451699 | Msa0477310:intron | 45.0% | |
| TATATGCGAGAAGCCGAACA+AGG | + | chr3_3:81451696-81451715 | None:intergenic | 45.0% | |
| !! | CTGGGTTAATTGTTGGTGGT+TGG | - | chr3_3:81452140-81452159 | Msa0477310:intron | 45.0% |
| !!! | CAGCAACCTTTTGCTATTGG+AGG | - | chr3_3:81452217-81452236 | Msa0477310:intron | 45.0% |
| ! | ACGTGGAAAAGGCACATGAT+TGG | - | chr3_3:81452693-81452712 | Msa0477310:intron | 45.0% |
| TTGTCAATTTGCAGGTCTCG+TGG | - | chr3_3:81452991-81453010 | Msa0477310:intron | 45.0% | |
| TCTGGGTCCAGTTACTTGTA+TGG | - | chr3_3:81453154-81453173 | Msa0477310:intron | 45.0% | |
| TCATACCGTCTTTCCATGCT+TGG | + | chr3_3:81453189-81453208 | None:intergenic | 45.0% | |
| ATGGAAAGACGGTATGACCA+AGG | - | chr3_3:81453192-81453211 | Msa0477310:intron | 45.0% | |
| TATGACCAAGGATGAAGCTG+AGG | - | chr3_3:81453204-81453223 | Msa0477310:intron | 45.0% | |
| CAAGGATGAAGCTGAGGTAT+GGG | - | chr3_3:81453210-81453229 | Msa0477310:CDS | 45.0% | |
| !!! | GGGAAGGCTTTGGAGTATTT+TGG | + | chr3_3:81453489-81453508 | None:intergenic | 45.0% |
| AAGTTGGGATTTGGAAGGGA+AGG | + | chr3_3:81453505-81453524 | None:intergenic | 45.0% | |
| TAAATTCAGAGGGAGTGACC+AGG | - | chr3_3:81453767-81453786 | Msa0477310:CDS | 45.0% | |
| ATCACCTGGGTAGAAATTCC+TGG | + | chr3_3:81453788-81453807 | None:intergenic | 45.0% | |
| TCAGGGAAAAGGTCAACAGA+GGG | + | chr3_3:81453935-81453954 | None:intergenic | 45.0% | |
| TTCAGGGAAAAGGTCAACAG+AGG | + | chr3_3:81453936-81453955 | None:intergenic | 45.0% | |
| ATGGTGGTTCCCATGGAATG+GGG | + | chr3_3:81450729-81450748 | None:intergenic | 50.0% | |
| ! | GATGGTGGTTCCCATGGAAT+GGG | + | chr3_3:81450730-81450749 | None:intergenic | 50.0% |
| !! | TGATGGTGGTTCCCATGGAA+TGG | + | chr3_3:81450731-81450750 | None:intergenic | 50.0% |
| TCCATGGGAACCACCATCAT+CGG | - | chr3_3:81450732-81450751 | Msa0477310:three_prime_UTR | 50.0% | |
| ! | GTAGGTAACACCGATGATGG+TGG | + | chr3_3:81450745-81450764 | None:intergenic | 50.0% |
| !! | ATCGGTGTTACCTACAACGG+CGG | - | chr3_3:81450750-81450769 | Msa0477310:three_prime_UTR | 50.0% |
| AATGTCTACGTCTGTCGCTC+TGG | - | chr3_3:81450943-81450962 | Msa0477310:intron | 50.0% | |
| TTTGCAGGCTGCAGATTCTC+AGG | - | chr3_3:81451450-81451469 | Msa0477310:intron | 50.0% | |
| AAGCCACTTACGTGTGTTGG+TGG | + | chr3_3:81451504-81451523 | None:intergenic | 50.0% | |
| TGGACAACCTGCAACAGTCA+AGG | - | chr3_3:81451660-81451679 | Msa0477310:intron | 50.0% | |
| GCAGCCTATCAGCAATTGCT+TGG | + | chr3_3:81452495-81452514 | None:intergenic | 50.0% | |
| TGCAGGTCTCGTGGTCAAAT+TGG | - | chr3_3:81453000-81453019 | Msa0477310:CDS | 50.0% | |
| CCATACCTCAGCTTCATCCT+TGG | + | chr3_3:81453212-81453231 | None:intergenic | 50.0% | |
| CCAAGGATGAAGCTGAGGTA+TGG | - | chr3_3:81453209-81453228 | Msa0477310:CDS | 50.0% | |
| GGATTTGGAAGGGAAGGCTT+TGG | + | chr3_3:81453499-81453518 | None:intergenic | 50.0% | |
| TCACTTGCCATTGCTCGTGA+TGG | - | chr3_3:81453613-81453632 | Msa0477310:intron | 50.0% | |
| ACTAGCACCATCACGAGCAA+TGG | + | chr3_3:81453623-81453642 | None:intergenic | 50.0% | |
| ! | ATTGCTCGTGATGGTGCTAG+TGG | - | chr3_3:81453622-81453641 | Msa0477310:intron | 50.0% |
| GTGACCAGGAATTTCTACCC+AGG | - | chr3_3:81453781-81453800 | Msa0477310:CDS | 50.0% | |
| !! | ACCGATGATGGTGGTTCCCA+TGG | + | chr3_3:81450736-81450755 | None:intergenic | 55.0% |
| AAGAACAACGCCGCCGTTGT+AGG | + | chr3_3:81450763-81450782 | None:intergenic | 55.0% | |
| TACAACGGCGGCGTTGTTCT+TGG | - | chr3_3:81450762-81450781 | Msa0477310:three_prime_UTR | 55.0% | |
| ! | CTACGTCTGTCGCTCTGGAT+CGG | - | chr3_3:81450948-81450967 | Msa0477310:intron | 55.0% |
| ! | CCACTTACGTGTGTTGGTGG+AGG | + | chr3_3:81451501-81451520 | None:intergenic | 55.0% |
| CCTCCACCAACACACGTAAG+TGG | - | chr3_3:81451498-81451517 | Msa0477310:CDS | 55.0% | |
| GCAGCAACCTTGACTGTTGC+AGG | + | chr3_3:81451670-81451689 | None:intergenic | 55.0% | |
| GGTGGTTGGGACAAGTACGA+AGG | - | chr3_3:81452154-81452173 | Msa0477310:intron | 55.0% | |
| GGTTGGGACAAGTACGAAGG+TGG | - | chr3_3:81452157-81452176 | Msa0477310:intron | 55.0% | |
| GGAGGCTCACAACTCATTGC+TGG | - | chr3_3:81453834-81453853 | Msa0477310:intron | 55.0% | |
| !! | ACCAGTGCTGGTTCGGGAGT+CGG | + | chr3_3:81450790-81450809 | None:intergenic | 60.0% |
| ! | GCTCGTGATGGTGCTAGTGG+CGG | - | chr3_3:81453625-81453644 | Msa0477310:intron | 60.0% |
| ! | GCCGACTCCCGAACCAGCAC+TGG | - | chr3_3:81450786-81450805 | Msa0477310:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 81450588 | 81454132 | 81450588 | ID=Msa0477310;Name=Msa0477310 |
| chr3_3 | mRNA | 81450588 | 81454132 | 81450588 | ID=Msa0477310-mRNA-1;Parent=Msa0477310;Name=Msa0477310-mRNA-1;_AED=0.10;_eAED=0.10;_QI=114|1|1|1|1|1|8|241|232 |
| chr3_3 | exon | 81450588 | 81450954 | 81450588 | ID=Msa0477310-mRNA-1:exon:22470;Parent=Msa0477310-mRNA-1 |
| chr3_3 | exon | 81451054 | 81451128 | 81451054 | ID=Msa0477310-mRNA-1:exon:22469;Parent=Msa0477310-mRNA-1 |
| chr3_3 | exon | 81451495 | 81451568 | 81451495 | ID=Msa0477310-mRNA-1:exon:22468;Parent=Msa0477310-mRNA-1 |
| chr3_3 | exon | 81452482 | 81452593 | 81452482 | ID=Msa0477310-mRNA-1:exon:22467;Parent=Msa0477310-mRNA-1 |
| chr3_3 | exon | 81452997 | 81453069 | 81452997 | ID=Msa0477310-mRNA-1:exon:22466;Parent=Msa0477310-mRNA-1 |
| chr3_3 | exon | 81453208 | 81453263 | 81453208 | ID=Msa0477310-mRNA-1:exon:22465;Parent=Msa0477310-mRNA-1 |
| chr3_3 | exon | 81453751 | 81453827 | 81453751 | ID=Msa0477310-mRNA-1:exon:22464;Parent=Msa0477310-mRNA-1 |
| chr3_3 | exon | 81453913 | 81454132 | 81453913 | ID=Msa0477310-mRNA-1:exon:22463;Parent=Msa0477310-mRNA-1 |
| chr3_3 | five_prime_UTR | 81454019 | 81454132 | 81454019 | ID=Msa0477310-mRNA-1:five_prime_utr;Parent=Msa0477310-mRNA-1 |
| chr3_3 | CDS | 81453913 | 81454018 | 81453913 | ID=Msa0477310-mRNA-1:cds;Parent=Msa0477310-mRNA-1 |
| chr3_3 | CDS | 81453751 | 81453827 | 81453751 | ID=Msa0477310-mRNA-1:cds;Parent=Msa0477310-mRNA-1 |
| chr3_3 | CDS | 81453208 | 81453263 | 81453208 | ID=Msa0477310-mRNA-1:cds;Parent=Msa0477310-mRNA-1 |
| chr3_3 | CDS | 81452997 | 81453069 | 81452997 | ID=Msa0477310-mRNA-1:cds;Parent=Msa0477310-mRNA-1 |
| chr3_3 | CDS | 81452482 | 81452593 | 81452482 | ID=Msa0477310-mRNA-1:cds;Parent=Msa0477310-mRNA-1 |
| chr3_3 | CDS | 81451495 | 81451568 | 81451495 | ID=Msa0477310-mRNA-1:cds;Parent=Msa0477310-mRNA-1 |
| chr3_3 | CDS | 81451054 | 81451128 | 81451054 | ID=Msa0477310-mRNA-1:cds;Parent=Msa0477310-mRNA-1 |
| chr3_3 | CDS | 81450829 | 81450954 | 81450829 | ID=Msa0477310-mRNA-1:cds;Parent=Msa0477310-mRNA-1 |
| chr3_3 | three_prime_UTR | 81450588 | 81450828 | 81450588 | ID=Msa0477310-mRNA-1:three_prime_utr;Parent=Msa0477310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
