Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992020 | XP_013452347.2 | 60.326 | 184 | 23 | 3 | 1 | 135 | 1 | 183 | 1.66e-56 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992020 | sp|Q9FLX7|NDUA5_ARATH | 73.077 | 104 | 27 | 1 | 1 | 104 | 1 | 103 | 1.22e-43 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992020 | I3SP15 | 60.326 | 184 | 23 | 3 | 1 | 135 | 1 | 183 | 7.91e-57 | 184 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0992020 | 0.815559 | 8.689336e-52 | -8.615850e-47 |
| Msa0011660 | Msa0992020 | -0.801550 | 8.539147e-49 | -8.615850e-47 |
| Msa0044000 | Msa0992020 | 0.819506 | 1.120884e-52 | -8.615850e-47 |
| Msa0602870 | Msa0992020 | 0.828568 | 8.362518e-55 | -8.615850e-47 |
| Msa0607050 | Msa0992020 | 0.807881 | 4.069278e-50 | -8.615850e-47 |
| Msa0610430 | Msa0992020 | 0.813032 | 3.142749e-51 | -8.615850e-47 |
| Msa0610840 | Msa0992020 | -0.808434 | 3.103388e-50 | -8.615850e-47 |
| Msa0643890 | Msa0992020 | 0.823708 | 1.197818e-53 | -8.615850e-47 |
| Msa0683730 | Msa0992020 | 0.813990 | 1.934970e-51 | -8.615850e-47 |
| Msa0709400 | Msa0992020 | 0.802121 | 6.520551e-49 | -8.615850e-47 |
| Msa0729720 | Msa0992020 | 0.818614 | 1.787809e-52 | -8.615850e-47 |
| Msa0740510 | Msa0992020 | 0.804655 | 1.946372e-49 | -8.615850e-47 |
| Msa0743720 | Msa0992020 | 0.816519 | 5.302921e-52 | -8.615850e-47 |
| Msa0749290 | Msa0992020 | 0.802627 | 5.128169e-49 | -8.615850e-47 |
| Msa0803620 | Msa0992020 | 0.802539 | 5.346672e-49 | -8.615850e-47 |
| Msa0808080 | Msa0992020 | 0.834297 | 3.252092e-56 | -8.615850e-47 |
| Msa0820770 | Msa0992020 | 0.806066 | 9.854132e-50 | -8.615850e-47 |
| Msa0820850 | Msa0992020 | 0.822382 | 2.440781e-53 | -8.615850e-47 |
| Msa0837600 | Msa0992020 | 0.809456 | 1.875322e-50 | -8.615850e-47 |
| Msa0127800 | Msa0992020 | 0.818643 | 1.761046e-52 | -8.615850e-47 |
| Msa0140820 | Msa0992020 | 0.816850 | 4.471293e-52 | -8.615850e-47 |
| Msa0211150 | Msa0992020 | 0.806183 | 9.310579e-50 | -8.615850e-47 |
| Msa0218780 | Msa0992020 | 0.807437 | 5.058231e-50 | -8.615850e-47 |
| Msa0440750 | Msa0992020 | 0.808874 | 2.499817e-50 | -8.615850e-47 |
| Msa0453350 | Msa0992020 | 0.822700 | 2.058336e-53 | -8.615850e-47 |
| Msa0477350 | Msa0992020 | 0.800599 | 1.336510e-48 | -8.615850e-47 |
| Msa0992020 | Msa0993730 | 0.993215 | 3.232535e-198 | -8.615850e-47 |
| Msa0992020 | Msa0993750 | 0.987826 | 1.110285e-171 | -8.615850e-47 |
| Msa0992020 | Msa1005990 | 0.819716 | 1.003403e-52 | -8.615850e-47 |
| Msa0992020 | Msa1014540 | 0.804369 | 2.232945e-49 | -8.615850e-47 |
| Msa0992020 | Msa1046280 | 0.803888 | 2.811999e-49 | -8.615850e-47 |
| Msa0992020 | Msa1048160 | 0.816471 | 5.435936e-52 | -8.615850e-47 |
| Msa0992020 | Msa1075540 | 0.803942 | 2.740475e-49 | -8.615850e-47 |
| Msa0992020 | Msa1100050 | 0.824465 | 7.955187e-54 | -8.615850e-47 |
| Msa0992020 | Msa1124960 | 0.811924 | 5.488921e-51 | -8.615850e-47 |
| Msa0992020 | Msa1135470 | 0.840746 | 7.219876e-58 | -8.615850e-47 |
| Msa0992020 | Msa1137570 | 0.809652 | 1.701854e-50 | -8.615850e-47 |
| Msa0992020 | Msa1174040 | 0.815894 | 7.318046e-52 | -8.615850e-47 |
| Msa0992020 | Msa1244600 | 0.806650 | 7.420864e-50 | -8.615850e-47 |
| Msa0992020 | Msa1253020 | 0.813491 | 2.492144e-51 | -8.615850e-47 |
| Msa0992020 | Msa1254730 | 0.801717 | 7.892915e-49 | -8.615850e-47 |
| Msa0992020 | Msa1274520 | 0.805696 | 1.178205e-49 | -8.615850e-47 |
| Msa0992020 | Msa1275360 | 0.804845 | 1.776774e-49 | -8.615850e-47 |
| Msa0992020 | Msa1279400 | 0.800340 | 1.509239e-48 | -8.615850e-47 |
| Msa0992020 | Msa1284550 | 0.800975 | 1.119978e-48 | -8.615850e-47 |
| Msa0992020 | Msa1284680 | 0.806992 | 6.281643e-50 | -8.615850e-47 |
| Msa0992020 | Msa1319800 | 0.812101 | 5.022228e-51 | -8.615850e-47 |
| Msa0992020 | Msa1342900 | 0.809929 | 1.483899e-50 | -8.615850e-47 |
| Msa0992020 | Msa1353470 | 0.820953 | 5.223669e-53 | -8.615850e-47 |
| Msa0992020 | Msa1370070 | -0.825574 | 4.351260e-54 | -8.615850e-47 |
| Msa0992020 | Msa1386780 | 0.806153 | 9.446483e-50 | -8.615850e-47 |
| Msa0992020 | Msa1451550 | 0.801290 | 9.656088e-49 | -8.615850e-47 |
| Msa0257460 | Msa0992020 | 0.803725 | 3.039487e-49 | -8.615850e-47 |
| Msa0261550 | Msa0992020 | 0.806297 | 8.809654e-50 | -8.615850e-47 |
| Msa0273900 | Msa0992020 | 0.808202 | 3.477096e-50 | -8.615850e-47 |
| Msa0326480 | Msa0992020 | 0.812679 | 3.754949e-51 | -8.615850e-47 |
| Msa0343850 | Msa0992020 | 0.801711 | 7.916961e-49 | -8.615850e-47 |
| Msa0547890 | Msa0992020 | 0.803591 | 3.240776e-49 | -8.615850e-47 |
| Msa0847770 | Msa0992020 | 0.810762 | 9.808136e-51 | -8.615850e-47 |
| Msa0849030 | Msa0992020 | 0.835805 | 1.355238e-56 | -8.615850e-47 |
| Msa0861090 | Msa0992020 | 0.806334 | 8.651174e-50 | -8.615850e-47 |
| Msa0861130 | Msa0992020 | 0.817466 | 3.250392e-52 | -8.615850e-47 |
| Msa0876190 | Msa0992020 | 0.813691 | 2.251761e-51 | -8.615850e-47 |
| Msa0881460 | Msa0992020 | 0.812059 | 5.128077e-51 | -8.615850e-47 |
| Msa0958360 | Msa0992020 | 0.987978 | 2.987692e-172 | -8.615850e-47 |
| Msa0963270 | Msa0992020 | 0.800375 | 1.484603e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992020 | MtrunA17_Chr6g0470231 | 60.326 | 184 | 23 | 3 | 1 | 135 | 87 | 269 | 3.51e-60 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992020 | AT5G52840.2 | 72.642 | 106 | 28 | 1 | 1 | 106 | 1 | 105 | 6.80e-46 | 145 |
| Msa0992020 | AT5G52840.1 | 73.077 | 104 | 27 | 1 | 1 | 104 | 1 | 103 | 1.24e-44 | 144 |
Find 30 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGATTCAACAGTCTTTC+AGG | 0.170090 | 6_4:+58755751 | Msa0992020:three_prime_UTR |
| ATTTAGTTTGATGAAATAAA+AGG | 0.246089 | 6_4:-58755711 | None:intergenic |
| TTACGATACCCTTTGTCTTC+TGG | 0.257585 | 6_4:-58753770 | None:intergenic |
| TCAACCAGTTCAAGTTGTTT+TGG | 0.282704 | 6_4:-58755789 | None:intergenic |
| CTTTACGCGTCTTGGACTTA+AGG | 0.317074 | 6_4:+58753808 | Msa0992020:CDS |
| TGCTCCAAAACAACTTGAAC+TGG | 0.351627 | 6_4:+58755785 | Msa0992020:three_prime_UTR |
| ATTAACACTTCTCTTGCGTT+TGG | 0.354432 | 6_4:-58753707 | None:intergenic |
| TTAACACTTCTCTTGCGTTT+GGG | 0.383857 | 6_4:-58753706 | None:intergenic |
| TTTGTCAAGAAGAAGAATAT+TGG | 0.391623 | 6_4:+58753831 | Msa0992020:CDS |
| TCTAATATAGCTGACGTTCA+TGG | 0.401029 | 6_4:-58755658 | None:intergenic |
| TATTGAGAATCGTCTTGGTT+GGG | 0.401668 | 6_4:+58753859 | Msa0992020:CDS |
| GTTGAAAGCTTTACGCGTCT+TGG | 0.426516 | 6_4:+58753800 | Msa0992020:CDS |
| GACACTAGACGAGATCAAAA+AGG | 0.435244 | 6_4:+58753745 | Msa0992020:CDS |
| AAACTTATTTGCCTTATGAA+TGG | 0.436503 | 6_4:+58753923 | Msa0992020:CDS |
| GAATCGTCTTGGTTGGGGTC+AGG | 0.444696 | 6_4:+58753865 | Msa0992020:CDS |
| CGTCTAGTGTCTTACTATAG+AGG | 0.468796 | 6_4:-58753733 | None:intergenic |
| TCAATGGCCGCGCCGTCGCT+CGG | 0.471122 | 6_4:-58753637 | None:intergenic |
| TCAGATTCAACAGTCTTTCA+GGG | 0.476603 | 6_4:+58755752 | Msa0992020:three_prime_UTR |
| ACAAGAAAAGATGGTGCTGC+TGG | 0.493227 | 6_4:+58755610 | Msa0992020:CDS |
| AAAGGAAAACCACATTCAAA+AGG | 0.501827 | 6_4:-58755693 | None:intergenic |
| ATTGAGAATCGTCTTGGTTG+GGG | 0.506457 | 6_4:+58753860 | Msa0992020:CDS |
| ATGAATATTGAGAATCGTCT+TGG | 0.525507 | 6_4:+58753854 | Msa0992020:CDS |
| ATATTGAGAATCGTCTTGGT+TGG | 0.528056 | 6_4:+58753858 | Msa0992020:CDS |
| AAAAGGTTCCAGAAGACAAA+GGG | 0.534276 | 6_4:+58753762 | Msa0992020:CDS |
| GTAAAATACAGGTTTGTCGA+TGG | 0.573538 | 6_4:+58755561 | Msa0992020:intron |
| AAAACAACAACAGGAATCGT+AGG | 0.600187 | 6_4:+58753671 | Msa0992020:CDS |
| GTGGCTGAAACAAGAAAAGA+TGG | 0.607028 | 6_4:+58755601 | Msa0992020:CDS |
| GGCAAAGATAGAAGAACTTG+TGG | 0.623499 | 6_4:+58755582 | Msa0992020:CDS |
| GAAGATGTTTCTCCGAGCGA+CGG | 0.629217 | 6_4:+58753625 | Msa0992020:exon |
| TGTTTCTCCGAGCGACGGCG+CGG | 0.688196 | 6_4:+58753630 | Msa0992020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATTTAATCATATGAT+AGG | - | chr6_4:58754134-58754153 | None:intergenic | 15.0% |
| !!! | ATTTAGTTTGATGAAATAAA+AGG | - | chr6_4:58755714-58755733 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAATCATATGAT+AGG | - | chr6_4:58754134-58754153 | None:intergenic | 15.0% |
| !!! | ATTTAGTTTGATGAAATAAA+AGG | - | chr6_4:58755714-58755733 | None:intergenic | 15.0% |
| !! | CAAAAAAAATACCATTCATA+AGG | - | chr6_4:58753937-58753956 | None:intergenic | 20.0% |
| !! | TTAAGTAGATTATTAGTAAG+TGG | + | chr6_4:58754108-58754127 | Msa0992020:intron | 20.0% |
| !! | TCATATGATTAAATAACAAG+AGG | + | chr6_4:58754135-58754154 | Msa0992020:intron | 20.0% |
| !! | TTCTAGTATTTAACTCTAAT+GGG | - | chr6_4:58754162-58754181 | None:intergenic | 20.0% |
| !! | ATTCTAGTATTTAACTCTAA+TGG | - | chr6_4:58754163-58754182 | None:intergenic | 20.0% |
| !! | GATGGTAATTAAATAAAACA+TGG | - | chr6_4:58754356-58754375 | None:intergenic | 20.0% |
| !! | CAAACAAAAAAATAAACAGA+TGG | - | chr6_4:58754374-58754393 | None:intergenic | 20.0% |
| !!! | CATCTGTTTATTTTTTTGTT+TGG | + | chr6_4:58754372-58754391 | Msa0992020:intron | 20.0% |
| !!! | TTGTTTTTCTTTTGTATCAT+CGG | + | chr6_4:58754501-58754520 | Msa0992020:intron | 20.0% |
| !!! | TTTGTTTTCTCATTGAAAAA+AGG | - | chr6_4:58755119-58755138 | None:intergenic | 20.0% |
| !!! | TTCTATGTTGATTAATATGT+GGG | - | chr6_4:58755161-58755180 | None:intergenic | 20.0% |
| !!! | TTTCTATGTTGATTAATATG+TGG | - | chr6_4:58755162-58755181 | None:intergenic | 20.0% |
| !! | CAAAAAAAATACCATTCATA+AGG | - | chr6_4:58753937-58753956 | None:intergenic | 20.0% |
| !! | TTAAGTAGATTATTAGTAAG+TGG | + | chr6_4:58754108-58754127 | Msa0992020:intron | 20.0% |
| !! | TCATATGATTAAATAACAAG+AGG | + | chr6_4:58754135-58754154 | Msa0992020:intron | 20.0% |
| !! | TTCTAGTATTTAACTCTAAT+GGG | - | chr6_4:58754162-58754181 | None:intergenic | 20.0% |
| !! | ATTCTAGTATTTAACTCTAA+TGG | - | chr6_4:58754163-58754182 | None:intergenic | 20.0% |
| !! | GATGGTAATTAAATAAAACA+TGG | - | chr6_4:58754356-58754375 | None:intergenic | 20.0% |
| !! | CAAACAAAAAAATAAACAGA+TGG | - | chr6_4:58754374-58754393 | None:intergenic | 20.0% |
| !!! | CATCTGTTTATTTTTTTGTT+TGG | + | chr6_4:58754372-58754391 | Msa0992020:intron | 20.0% |
| !!! | TTGTTTTTCTTTTGTATCAT+CGG | + | chr6_4:58754501-58754520 | Msa0992020:intron | 20.0% |
| !!! | TTTGTTTTCTCATTGAAAAA+AGG | - | chr6_4:58755119-58755138 | None:intergenic | 20.0% |
| !!! | TTCTATGTTGATTAATATGT+GGG | - | chr6_4:58755161-58755180 | None:intergenic | 20.0% |
| !!! | TTTCTATGTTGATTAATATG+TGG | - | chr6_4:58755162-58755181 | None:intergenic | 20.0% |
| !! | GTTTTTATTCTTGTCATCAA+TGG | - | chr6_4:58753656-58753675 | None:intergenic | 25.0% |
| ! | ACAAGAATAAAAACAACAAC+AGG | + | chr6_4:58753662-58753681 | Msa0992020:CDS | 25.0% |
| ! | TTTGTCAAGAAGAAGAATAT+TGG | + | chr6_4:58753831-58753850 | Msa0992020:CDS | 25.0% |
| ! | AAACTTATTTGCCTTATGAA+TGG | + | chr6_4:58753923-58753942 | Msa0992020:CDS | 25.0% |
| !!! | ATGGTATTTTTTTTGTGATC+TGG | + | chr6_4:58753942-58753961 | Msa0992020:intron | 25.0% |
| !! | TTCTACTATTTGTTGCAAAT+TGG | + | chr6_4:58754030-58754049 | Msa0992020:intron | 25.0% |
| ! | TAATTAGTAGGTCGTTAATT+AGG | + | chr6_4:58754084-58754103 | Msa0992020:intron | 25.0% |
| ! | TCTAGTATTTAACTCTAATG+GGG | - | chr6_4:58754161-58754180 | None:intergenic | 25.0% |
| ! | AGAATGTTCTCTATATAAAG+CGG | + | chr6_4:58754178-58754197 | Msa0992020:intron | 25.0% |
| ! | ATTTCCATTCGTATGAATAA+AGG | + | chr6_4:58754328-58754347 | Msa0992020:intron | 25.0% |
| !! | TGTTTTTCTTTTGTATCATC+GGG | + | chr6_4:58754502-58754521 | Msa0992020:intron | 25.0% |
| !! | GTAACTTATCATATTTTACC+TGG | + | chr6_4:58754578-58754597 | Msa0992020:intron | 25.0% |
| ! | ATGTGGTTACATTCAATTAT+TGG | + | chr6_4:58754959-58754978 | Msa0992020:intron | 25.0% |
| !!! | TAAGAAAATAGGTTTTTCGA+AGG | - | chr6_4:58755228-58755247 | None:intergenic | 25.0% |
| !!! | TTAAGAGACTGTATTTTAGA+AGG | - | chr6_4:58755443-58755462 | None:intergenic | 25.0% |
| !!! | TCATTTGTTGTGTAAAATAC+AGG | + | chr6_4:58755550-58755569 | Msa0992020:intron | 25.0% |
| ! | AAATAACATTGAACTTTGCA+TGG | + | chr6_4:58755821-58755840 | Msa0992020:three_prime_UTR | 25.0% |
| !! | GTTTTTATTCTTGTCATCAA+TGG | - | chr6_4:58753656-58753675 | None:intergenic | 25.0% |
| ! | ACAAGAATAAAAACAACAAC+AGG | + | chr6_4:58753662-58753681 | Msa0992020:CDS | 25.0% |
| ! | TTTGTCAAGAAGAAGAATAT+TGG | + | chr6_4:58753831-58753850 | Msa0992020:CDS | 25.0% |
| ! | AAACTTATTTGCCTTATGAA+TGG | + | chr6_4:58753923-58753942 | Msa0992020:CDS | 25.0% |
| !!! | ATGGTATTTTTTTTGTGATC+TGG | + | chr6_4:58753942-58753961 | Msa0992020:intron | 25.0% |
| !! | TTCTACTATTTGTTGCAAAT+TGG | + | chr6_4:58754030-58754049 | Msa0992020:intron | 25.0% |
| ! | TAATTAGTAGGTCGTTAATT+AGG | + | chr6_4:58754084-58754103 | Msa0992020:intron | 25.0% |
| ! | TCTAGTATTTAACTCTAATG+GGG | - | chr6_4:58754161-58754180 | None:intergenic | 25.0% |
| ! | AGAATGTTCTCTATATAAAG+CGG | + | chr6_4:58754178-58754197 | Msa0992020:intron | 25.0% |
| ! | ATTTCCATTCGTATGAATAA+AGG | + | chr6_4:58754328-58754347 | Msa0992020:intron | 25.0% |
| !! | TGTTTTTCTTTTGTATCATC+GGG | + | chr6_4:58754502-58754521 | Msa0992020:intron | 25.0% |
| !! | GTAACTTATCATATTTTACC+TGG | + | chr6_4:58754578-58754597 | Msa0992020:intron | 25.0% |
| ! | ATGTGGTTACATTCAATTAT+TGG | + | chr6_4:58754959-58754978 | Msa0992020:intron | 25.0% |
| !!! | TAAGAAAATAGGTTTTTCGA+AGG | - | chr6_4:58755228-58755247 | None:intergenic | 25.0% |
| !!! | TTAAGAGACTGTATTTTAGA+AGG | - | chr6_4:58755443-58755462 | None:intergenic | 25.0% |
| !!! | TCATTTGTTGTGTAAAATAC+AGG | + | chr6_4:58755550-58755569 | Msa0992020:intron | 25.0% |
| ATGAATATTGAGAATCGTCT+TGG | + | chr6_4:58753854-58753873 | Msa0992020:CDS | 30.0% | |
| !! | TTGTGTTTTTGTGAGCTTAT+TGG | + | chr6_4:58753966-58753985 | Msa0992020:intron | 30.0% |
| TGAGCTTATTGGCAATTATT+TGG | + | chr6_4:58753977-58753996 | Msa0992020:intron | 30.0% | |
| ! | TTTGTTGCAAATTGGTAGTT+AGG | + | chr6_4:58754038-58754057 | Msa0992020:intron | 30.0% |
| TAGTTAGGATCTAATATGAG+AGG | + | chr6_4:58754053-58754072 | Msa0992020:intron | 30.0% | |
| AGTTAGGATCTAATATGAGA+GGG | + | chr6_4:58754054-58754073 | Msa0992020:intron | 30.0% | |
| CTATATAAAGCGGAATTCTT+AGG | + | chr6_4:58754188-58754207 | Msa0992020:intron | 30.0% | |
| !!! | ATTCTTAGGTGTTTTAGAGT+AGG | + | chr6_4:58754202-58754221 | Msa0992020:intron | 30.0% |
| ! | ACGGAATAACTTTTCTGTTT+AGG | + | chr6_4:58754225-58754244 | Msa0992020:intron | 30.0% |
| ! | CGGAATAACTTTTCTGTTTA+GGG | + | chr6_4:58754226-58754245 | Msa0992020:intron | 30.0% |
| GTTACTGTTAATTCGATTCT+AGG | + | chr6_4:58754404-58754423 | Msa0992020:intron | 30.0% | |
| ! | TCATTCACACAATTCTAGAA+AGG | - | chr6_4:58754681-58754700 | None:intergenic | 30.0% |
| AATTGTGTGAATGAATACTG+AGG | + | chr6_4:58754687-58754706 | Msa0992020:intron | 30.0% | |
| ATTGTGTGAATGAATACTGA+GGG | + | chr6_4:58754688-58754707 | Msa0992020:intron | 30.0% | |
| ACAATAGATACGGTATAACA+AGG | - | chr6_4:58754741-58754760 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTTACACAGAA+TGG | - | chr6_4:58754766-58754785 | None:intergenic | 30.0% |
| CCATTCTGTGTAACAAAAAA+TGG | + | chr6_4:58754763-58754782 | Msa0992020:intron | 30.0% | |
| ATTTGTCACACCAAATTACA+GGG | + | chr6_4:58754807-58754826 | Msa0992020:intron | 30.0% | |
| GTCGAAATTACATCAAAAGT+GGG | - | chr6_4:58755076-58755095 | None:intergenic | 30.0% | |
| TGTCGAAATTACATCAAAAG+TGG | - | chr6_4:58755077-58755096 | None:intergenic | 30.0% | |
| AAAAAGGTAGTGACTTATGA+AGG | - | chr6_4:58755103-58755122 | None:intergenic | 30.0% | |
| AGGAAAAATGAAGTTGAACT+TGG | - | chr6_4:58755208-58755227 | None:intergenic | 30.0% | |
| ! | AAACAGATTGGTGTTCTATT+TGG | - | chr6_4:58755273-58755292 | None:intergenic | 30.0% |
| GTTACTAGAGAAAAACAGAT+TGG | - | chr6_4:58755285-58755304 | None:intergenic | 30.0% | |
| ! | AGTCTCTTAATTTTGTTCAG+TGG | + | chr6_4:58755453-58755472 | Msa0992020:intron | 30.0% |
| !!! | TTCAGTGGTTCTTATTTTTC+TGG | + | chr6_4:58755468-58755487 | Msa0992020:intron | 30.0% |
| ! | TTGAATTCTCCTTTTGAATG+TGG | + | chr6_4:58755684-58755703 | Msa0992020:three_prime_UTR | 30.0% |
| AAAGGAAAACCACATTCAAA+AGG | - | chr6_4:58755696-58755715 | None:intergenic | 30.0% | |
| ATGAATATTGAGAATCGTCT+TGG | + | chr6_4:58753854-58753873 | Msa0992020:CDS | 30.0% | |
| !! | TTGTGTTTTTGTGAGCTTAT+TGG | + | chr6_4:58753966-58753985 | Msa0992020:intron | 30.0% |
| TGAGCTTATTGGCAATTATT+TGG | + | chr6_4:58753977-58753996 | Msa0992020:intron | 30.0% | |
| ! | TTTGTTGCAAATTGGTAGTT+AGG | + | chr6_4:58754038-58754057 | Msa0992020:intron | 30.0% |
| TAGTTAGGATCTAATATGAG+AGG | + | chr6_4:58754053-58754072 | Msa0992020:intron | 30.0% | |
| AGTTAGGATCTAATATGAGA+GGG | + | chr6_4:58754054-58754073 | Msa0992020:intron | 30.0% | |
| CTATATAAAGCGGAATTCTT+AGG | + | chr6_4:58754188-58754207 | Msa0992020:intron | 30.0% | |
| !!! | ATTCTTAGGTGTTTTAGAGT+AGG | + | chr6_4:58754202-58754221 | Msa0992020:intron | 30.0% |
| ! | ACGGAATAACTTTTCTGTTT+AGG | + | chr6_4:58754225-58754244 | Msa0992020:intron | 30.0% |
| ! | CGGAATAACTTTTCTGTTTA+GGG | + | chr6_4:58754226-58754245 | Msa0992020:intron | 30.0% |
| GTTACTGTTAATTCGATTCT+AGG | + | chr6_4:58754404-58754423 | Msa0992020:intron | 30.0% | |
| ! | TCATTCACACAATTCTAGAA+AGG | - | chr6_4:58754681-58754700 | None:intergenic | 30.0% |
| AATTGTGTGAATGAATACTG+AGG | + | chr6_4:58754687-58754706 | Msa0992020:intron | 30.0% | |
| ATTGTGTGAATGAATACTGA+GGG | + | chr6_4:58754688-58754707 | Msa0992020:intron | 30.0% | |
| ACAATAGATACGGTATAACA+AGG | - | chr6_4:58754741-58754760 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTTACACAGAA+TGG | - | chr6_4:58754766-58754785 | None:intergenic | 30.0% |
| CCATTCTGTGTAACAAAAAA+TGG | + | chr6_4:58754763-58754782 | Msa0992020:intron | 30.0% | |
| ATTTGTCACACCAAATTACA+GGG | + | chr6_4:58754807-58754826 | Msa0992020:intron | 30.0% | |
| GTCGAAATTACATCAAAAGT+GGG | - | chr6_4:58755076-58755095 | None:intergenic | 30.0% | |
| TGTCGAAATTACATCAAAAG+TGG | - | chr6_4:58755077-58755096 | None:intergenic | 30.0% | |
| AAAAAGGTAGTGACTTATGA+AGG | - | chr6_4:58755103-58755122 | None:intergenic | 30.0% | |
| AGGAAAAATGAAGTTGAACT+TGG | - | chr6_4:58755208-58755227 | None:intergenic | 30.0% | |
| ! | AAACAGATTGGTGTTCTATT+TGG | - | chr6_4:58755273-58755292 | None:intergenic | 30.0% |
| GTTACTAGAGAAAAACAGAT+TGG | - | chr6_4:58755285-58755304 | None:intergenic | 30.0% | |
| ! | AGTCTCTTAATTTTGTTCAG+TGG | + | chr6_4:58755453-58755472 | Msa0992020:intron | 30.0% |
| !!! | TTCAGTGGTTCTTATTTTTC+TGG | + | chr6_4:58755468-58755487 | Msa0992020:intron | 30.0% |
| ! | TTGAATTCTCCTTTTGAATG+TGG | + | chr6_4:58755684-58755703 | Msa0992020:three_prime_UTR | 30.0% |
| AAAGGAAAACCACATTCAAA+AGG | - | chr6_4:58755696-58755715 | None:intergenic | 30.0% | |
| AAAACAACAACAGGAATCGT+AGG | + | chr6_4:58753671-58753690 | Msa0992020:CDS | 35.0% | |
| TTAACACTTCTCTTGCGTTT+GGG | - | chr6_4:58753709-58753728 | None:intergenic | 35.0% | |
| ATTAACACTTCTCTTGCGTT+TGG | - | chr6_4:58753710-58753729 | None:intergenic | 35.0% | |
| AAAAAGGTTCCAGAAGACAA+AGG | + | chr6_4:58753761-58753780 | Msa0992020:CDS | 35.0% | |
| AAAAGGTTCCAGAAGACAAA+GGG | + | chr6_4:58753762-58753781 | Msa0992020:CDS | 35.0% | |
| ATATTGAGAATCGTCTTGGT+TGG | + | chr6_4:58753858-58753877 | Msa0992020:CDS | 35.0% | |
| TATTGAGAATCGTCTTGGTT+GGG | + | chr6_4:58753859-58753878 | Msa0992020:CDS | 35.0% | |
| GCTTATTGGCAATTATTTGG+AGG | + | chr6_4:58753980-58753999 | Msa0992020:intron | 35.0% | |
| !! | GAGGGTGTTAAGTAATTAGT+AGG | + | chr6_4:58754072-58754091 | Msa0992020:intron | 35.0% |
| !!! | TTAGGTGTTTTAGAGTAGGA+CGG | + | chr6_4:58754206-58754225 | Msa0992020:intron | 35.0% |
| !! | TAATTCGATTCTAGGATCCA+TGG | + | chr6_4:58754412-58754431 | Msa0992020:intron | 35.0% |
| !! | AATTCGATTCTAGGATCCAT+GGG | + | chr6_4:58754413-58754432 | Msa0992020:intron | 35.0% |
| ! | TTTTCAGCATCCCAAATGAT+AGG | - | chr6_4:58754441-58754460 | None:intergenic | 35.0% |
| ! | ATTTGGGATGCTGAAAAACT+GGG | + | chr6_4:58754444-58754463 | Msa0992020:intron | 35.0% |
| ! | TTTCTTTTGTATCATCGGGT+TGG | + | chr6_4:58754506-58754525 | Msa0992020:intron | 35.0% |
| ! | AACATAGAGCATTATGTACC+AGG | - | chr6_4:58754599-58754618 | None:intergenic | 35.0% |
| CTCTATGTTGTTCATTCATG+TGG | + | chr6_4:58754610-58754629 | Msa0992020:intron | 35.0% | |
| TTCATGTGGTGTGATGAATT+TGG | + | chr6_4:58754624-58754643 | Msa0992020:intron | 35.0% | |
| TCATGTGGTGTGATGAATTT+GGG | + | chr6_4:58754625-58754644 | Msa0992020:intron | 35.0% | |
| CAGAATGGACACAATAGATA+CGG | - | chr6_4:58754751-58754770 | None:intergenic | 35.0% | |
| GATTTGTCACACCAAATTAC+AGG | + | chr6_4:58754806-58754825 | Msa0992020:intron | 35.0% | |
| CTGTAATCTTCCCTGTAATT+TGG | - | chr6_4:58754820-58754839 | None:intergenic | 35.0% | |
| !! | TGTGGGTTTTATAGTCTTGA+TGG | - | chr6_4:58755144-58755163 | None:intergenic | 35.0% |
| AGTTGAACTTGGCGATTAAT+TGG | - | chr6_4:58755197-58755216 | None:intergenic | 35.0% | |
| ! | GTTCTAGGCTGTAAGAAAAT+AGG | - | chr6_4:58755239-58755258 | None:intergenic | 35.0% |
| GTTCTATTTGGATACAGTTG+TGG | - | chr6_4:58755261-58755280 | None:intergenic | 35.0% | |
| GAACAGAAATGTTGACAAAG+AGG | - | chr6_4:58755358-58755377 | None:intergenic | 35.0% | |
| CAGATAACGACAGACAAATA+GGG | - | chr6_4:58755407-58755426 | None:intergenic | 35.0% | |
| TCAGATAACGACAGACAAAT+AGG | - | chr6_4:58755408-58755427 | None:intergenic | 35.0% | |
| GTCGTTATCTGATATTATCG+AGG | + | chr6_4:58755416-58755435 | Msa0992020:intron | 35.0% | |
| !!! | GTGGTTCTTATTTTTCTGGT+TGG | + | chr6_4:58755472-58755491 | Msa0992020:intron | 35.0% |
| GTAAAATACAGGTTTGTCGA+TGG | + | chr6_4:58755561-58755580 | Msa0992020:intron | 35.0% | |
| !!! | GCTTTTTGGGTTCTTCATTA+GGG | - | chr6_4:58755639-58755658 | None:intergenic | 35.0% |
| TCTAATATAGCTGACGTTCA+TGG | - | chr6_4:58755661-58755680 | None:intergenic | 35.0% | |
| TTCAGATTCAACAGTCTTTC+AGG | + | chr6_4:58755751-58755770 | Msa0992020:three_prime_UTR | 35.0% | |
| TCAGATTCAACAGTCTTTCA+GGG | + | chr6_4:58755752-58755771 | Msa0992020:three_prime_UTR | 35.0% | |
| !!! | TTCAAGTTGTTTTGGAGCAA+AGG | - | chr6_4:58755784-58755803 | None:intergenic | 35.0% |
| !!! | TCAACCAGTTCAAGTTGTTT+TGG | - | chr6_4:58755792-58755811 | None:intergenic | 35.0% |
| AAAACAACAACAGGAATCGT+AGG | + | chr6_4:58753671-58753690 | Msa0992020:CDS | 35.0% | |
| TTAACACTTCTCTTGCGTTT+GGG | - | chr6_4:58753709-58753728 | None:intergenic | 35.0% | |
| ATTAACACTTCTCTTGCGTT+TGG | - | chr6_4:58753710-58753729 | None:intergenic | 35.0% | |
| AAAAAGGTTCCAGAAGACAA+AGG | + | chr6_4:58753761-58753780 | Msa0992020:CDS | 35.0% | |
| AAAAGGTTCCAGAAGACAAA+GGG | + | chr6_4:58753762-58753781 | Msa0992020:CDS | 35.0% | |
| ATATTGAGAATCGTCTTGGT+TGG | + | chr6_4:58753858-58753877 | Msa0992020:CDS | 35.0% | |
| TATTGAGAATCGTCTTGGTT+GGG | + | chr6_4:58753859-58753878 | Msa0992020:CDS | 35.0% | |
| GCTTATTGGCAATTATTTGG+AGG | + | chr6_4:58753980-58753999 | Msa0992020:intron | 35.0% | |
| !! | GAGGGTGTTAAGTAATTAGT+AGG | + | chr6_4:58754072-58754091 | Msa0992020:intron | 35.0% |
| !!! | TTAGGTGTTTTAGAGTAGGA+CGG | + | chr6_4:58754206-58754225 | Msa0992020:intron | 35.0% |
| !! | TAATTCGATTCTAGGATCCA+TGG | + | chr6_4:58754412-58754431 | Msa0992020:intron | 35.0% |
| !! | AATTCGATTCTAGGATCCAT+GGG | + | chr6_4:58754413-58754432 | Msa0992020:intron | 35.0% |
| ! | TTTTCAGCATCCCAAATGAT+AGG | - | chr6_4:58754441-58754460 | None:intergenic | 35.0% |
| ! | ATTTGGGATGCTGAAAAACT+GGG | + | chr6_4:58754444-58754463 | Msa0992020:intron | 35.0% |
| ! | TTTCTTTTGTATCATCGGGT+TGG | + | chr6_4:58754506-58754525 | Msa0992020:intron | 35.0% |
| ! | AACATAGAGCATTATGTACC+AGG | - | chr6_4:58754599-58754618 | None:intergenic | 35.0% |
| CTCTATGTTGTTCATTCATG+TGG | + | chr6_4:58754610-58754629 | Msa0992020:intron | 35.0% | |
| TTCATGTGGTGTGATGAATT+TGG | + | chr6_4:58754624-58754643 | Msa0992020:intron | 35.0% | |
| TCATGTGGTGTGATGAATTT+GGG | + | chr6_4:58754625-58754644 | Msa0992020:intron | 35.0% | |
| CAGAATGGACACAATAGATA+CGG | - | chr6_4:58754751-58754770 | None:intergenic | 35.0% | |
| GATTTGTCACACCAAATTAC+AGG | + | chr6_4:58754806-58754825 | Msa0992020:intron | 35.0% | |
| CTGTAATCTTCCCTGTAATT+TGG | - | chr6_4:58754820-58754839 | None:intergenic | 35.0% | |
| !! | TGTGGGTTTTATAGTCTTGA+TGG | - | chr6_4:58755144-58755163 | None:intergenic | 35.0% |
| AGTTGAACTTGGCGATTAAT+TGG | - | chr6_4:58755197-58755216 | None:intergenic | 35.0% | |
| ! | GTTCTAGGCTGTAAGAAAAT+AGG | - | chr6_4:58755239-58755258 | None:intergenic | 35.0% |
| GTTCTATTTGGATACAGTTG+TGG | - | chr6_4:58755261-58755280 | None:intergenic | 35.0% | |
| GAACAGAAATGTTGACAAAG+AGG | - | chr6_4:58755358-58755377 | None:intergenic | 35.0% | |
| CAGATAACGACAGACAAATA+GGG | - | chr6_4:58755407-58755426 | None:intergenic | 35.0% | |
| TCAGATAACGACAGACAAAT+AGG | - | chr6_4:58755408-58755427 | None:intergenic | 35.0% | |
| GTCGTTATCTGATATTATCG+AGG | + | chr6_4:58755416-58755435 | Msa0992020:intron | 35.0% | |
| !!! | GTGGTTCTTATTTTTCTGGT+TGG | + | chr6_4:58755472-58755491 | Msa0992020:intron | 35.0% |
| GTAAAATACAGGTTTGTCGA+TGG | + | chr6_4:58755561-58755580 | Msa0992020:intron | 35.0% | |
| !!! | GCTTTTTGGGTTCTTCATTA+GGG | - | chr6_4:58755639-58755658 | None:intergenic | 35.0% |
| TCTAATATAGCTGACGTTCA+TGG | - | chr6_4:58755661-58755680 | None:intergenic | 35.0% | |
| TTCAGATTCAACAGTCTTTC+AGG | + | chr6_4:58755751-58755770 | Msa0992020:three_prime_UTR | 35.0% | |
| TCAGATTCAACAGTCTTTCA+GGG | + | chr6_4:58755752-58755771 | Msa0992020:three_prime_UTR | 35.0% | |
| !!! | TTCAAGTTGTTTTGGAGCAA+AGG | - | chr6_4:58755784-58755803 | None:intergenic | 35.0% |
| !!! | TCAACCAGTTCAAGTTGTTT+TGG | - | chr6_4:58755792-58755811 | None:intergenic | 35.0% |
| CGTCTAGTGTCTTACTATAG+AGG | - | chr6_4:58753736-58753755 | None:intergenic | 40.0% | |
| GACACTAGACGAGATCAAAA+AGG | + | chr6_4:58753745-58753764 | Msa0992020:CDS | 40.0% | |
| TTACGATACCCTTTGTCTTC+TGG | - | chr6_4:58753773-58753792 | None:intergenic | 40.0% | |
| ATTGAGAATCGTCTTGGTTG+GGG | + | chr6_4:58753860-58753879 | Msa0992020:CDS | 40.0% | |
| ! | TTTCTGTTTAGGGTCAGAGT+AGG | + | chr6_4:58754236-58754255 | Msa0992020:intron | 40.0% |
| !! | GATTCCTCTTTGAGTTGTGT+CGG | + | chr6_4:58754258-58754277 | Msa0992020:intron | 40.0% |
| GGTGCCTTTATTCATACGAA+TGG | - | chr6_4:58754335-58754354 | None:intergenic | 40.0% | |
| ATCCATGGGTTCCTATCATT+TGG | + | chr6_4:58754427-58754446 | Msa0992020:intron | 40.0% | |
| TCCATGGGTTCCTATCATTT+GGG | + | chr6_4:58754428-58754447 | Msa0992020:intron | 40.0% | |
| ! | CATTTGGGATGCTGAAAAAC+TGG | + | chr6_4:58754443-58754462 | Msa0992020:intron | 40.0% |
| ! | TTTGGGATGCTGAAAAACTG+GGG | + | chr6_4:58754445-58754464 | Msa0992020:intron | 40.0% |
| GAATGAATACTGAGGGAAAC+TGG | + | chr6_4:58754695-58754714 | Msa0992020:intron | 40.0% | |
| TGTCAGATACCAACACATGT+CGG | - | chr6_4:58754934-58754953 | None:intergenic | 40.0% | |
| TGGTATCTGACATCAACATG+TGG | + | chr6_4:58754942-58754961 | Msa0992020:intron | 40.0% | |
| TTGGATACAGTTGTGGTTCT+AGG | - | chr6_4:58755254-58755273 | None:intergenic | 40.0% | |
| TCACTAGTCGTCATAACACA+AGG | - | chr6_4:58755509-58755528 | None:intergenic | 40.0% | |
| GGCAAAGATAGAAGAACTTG+TGG | + | chr6_4:58755582-58755601 | Msa0992020:CDS | 40.0% | |
| GTGGCTGAAACAAGAAAAGA+TGG | + | chr6_4:58755601-58755620 | Msa0992020:CDS | 40.0% | |
| !!! | GGCTTTTTGGGTTCTTCATT+AGG | - | chr6_4:58755640-58755659 | None:intergenic | 40.0% |
| !!! | GTTGTTTTGGAGCAAAGGAT+TGG | - | chr6_4:58755779-58755798 | None:intergenic | 40.0% |
| TGCTCCAAAACAACTTGAAC+TGG | + | chr6_4:58755785-58755804 | Msa0992020:three_prime_UTR | 40.0% | |
| CGTCTAGTGTCTTACTATAG+AGG | - | chr6_4:58753736-58753755 | None:intergenic | 40.0% | |
| GACACTAGACGAGATCAAAA+AGG | + | chr6_4:58753745-58753764 | Msa0992020:CDS | 40.0% | |
| TTACGATACCCTTTGTCTTC+TGG | - | chr6_4:58753773-58753792 | None:intergenic | 40.0% | |
| ATTGAGAATCGTCTTGGTTG+GGG | + | chr6_4:58753860-58753879 | Msa0992020:CDS | 40.0% | |
| ! | TTTCTGTTTAGGGTCAGAGT+AGG | + | chr6_4:58754236-58754255 | Msa0992020:intron | 40.0% |
| !! | GATTCCTCTTTGAGTTGTGT+CGG | + | chr6_4:58754258-58754277 | Msa0992020:intron | 40.0% |
| GGTGCCTTTATTCATACGAA+TGG | - | chr6_4:58754335-58754354 | None:intergenic | 40.0% | |
| ATCCATGGGTTCCTATCATT+TGG | + | chr6_4:58754427-58754446 | Msa0992020:intron | 40.0% | |
| TCCATGGGTTCCTATCATTT+GGG | + | chr6_4:58754428-58754447 | Msa0992020:intron | 40.0% | |
| ! | CATTTGGGATGCTGAAAAAC+TGG | + | chr6_4:58754443-58754462 | Msa0992020:intron | 40.0% |
| ! | TTTGGGATGCTGAAAAACTG+GGG | + | chr6_4:58754445-58754464 | Msa0992020:intron | 40.0% |
| GAATGAATACTGAGGGAAAC+TGG | + | chr6_4:58754695-58754714 | Msa0992020:intron | 40.0% | |
| TGTCAGATACCAACACATGT+CGG | - | chr6_4:58754934-58754953 | None:intergenic | 40.0% | |
| TGGTATCTGACATCAACATG+TGG | + | chr6_4:58754942-58754961 | Msa0992020:intron | 40.0% | |
| TTGGATACAGTTGTGGTTCT+AGG | - | chr6_4:58755254-58755273 | None:intergenic | 40.0% | |
| TCACTAGTCGTCATAACACA+AGG | - | chr6_4:58755509-58755528 | None:intergenic | 40.0% | |
| GGCAAAGATAGAAGAACTTG+TGG | + | chr6_4:58755582-58755601 | Msa0992020:CDS | 40.0% | |
| GTGGCTGAAACAAGAAAAGA+TGG | + | chr6_4:58755601-58755620 | Msa0992020:CDS | 40.0% | |
| !!! | GGCTTTTTGGGTTCTTCATT+AGG | - | chr6_4:58755640-58755659 | None:intergenic | 40.0% |
| !!! | GTTGTTTTGGAGCAAAGGAT+TGG | - | chr6_4:58755779-58755798 | None:intergenic | 40.0% |
| TGCTCCAAAACAACTTGAAC+TGG | + | chr6_4:58755785-58755804 | Msa0992020:three_prime_UTR | 40.0% | |
| GTTGAAAGCTTTACGCGTCT+TGG | + | chr6_4:58753800-58753819 | Msa0992020:CDS | 45.0% | |
| CTTTACGCGTCTTGGACTTA+AGG | + | chr6_4:58753808-58753827 | Msa0992020:CDS | 45.0% | |
| TCCCAAATGATAGGAACCCA+TGG | - | chr6_4:58754432-58754451 | None:intergenic | 45.0% | |
| TCTAAGTGTCCGACATGTGT+TGG | + | chr6_4:58754922-58754941 | Msa0992020:intron | 45.0% | |
| AAAGTGGGCACAACTTGTGT+CGG | - | chr6_4:58755061-58755080 | None:intergenic | 45.0% | |
| TAGGGAGACTTGGAACAAAG+AGG | - | chr6_4:58755389-58755408 | None:intergenic | 45.0% | |
| GACAGACAAATAGGGAGACT+TGG | - | chr6_4:58755399-58755418 | None:intergenic | 45.0% | |
| !! | ACAAGAAAAGATGGTGCTGC+TGG | + | chr6_4:58755610-58755629 | Msa0992020:CDS | 45.0% |
| ! | GCTGACGTTCATGGCTTTTT+GGG | - | chr6_4:58755652-58755671 | None:intergenic | 45.0% |
| ! | AGCTGACGTTCATGGCTTTT+TGG | - | chr6_4:58755653-58755672 | None:intergenic | 45.0% |
| GTTGAAAGCTTTACGCGTCT+TGG | + | chr6_4:58753800-58753819 | Msa0992020:CDS | 45.0% | |
| CTTTACGCGTCTTGGACTTA+AGG | + | chr6_4:58753808-58753827 | Msa0992020:CDS | 45.0% | |
| TCCCAAATGATAGGAACCCA+TGG | - | chr6_4:58754432-58754451 | None:intergenic | 45.0% | |
| TCTAAGTGTCCGACATGTGT+TGG | + | chr6_4:58754922-58754941 | Msa0992020:intron | 45.0% | |
| AAAGTGGGCACAACTTGTGT+CGG | - | chr6_4:58755061-58755080 | None:intergenic | 45.0% | |
| TAGGGAGACTTGGAACAAAG+AGG | - | chr6_4:58755389-58755408 | None:intergenic | 45.0% | |
| GACAGACAAATAGGGAGACT+TGG | - | chr6_4:58755399-58755418 | None:intergenic | 45.0% | |
| !! | ACAAGAAAAGATGGTGCTGC+TGG | + | chr6_4:58755610-58755629 | Msa0992020:CDS | 45.0% |
| ! | GCTGACGTTCATGGCTTTTT+GGG | - | chr6_4:58755652-58755671 | None:intergenic | 45.0% |
| ! | AGCTGACGTTCATGGCTTTT+TGG | - | chr6_4:58755653-58755672 | None:intergenic | 45.0% |
| GAAGATGTTTCTCCGAGCGA+CGG | + | chr6_4:58753625-58753644 | Msa0992020:exon | 50.0% | |
| AGCTCCGACACAACTCAAAG+AGG | - | chr6_4:58754265-58754284 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr6_4:58754272-58754291 | Msa0992020:intron | 50.0% | |
| AAGTGGGCACAACTTGTGTC+GGG | - | chr6_4:58755060-58755079 | None:intergenic | 50.0% | |
| GAAGATGTTTCTCCGAGCGA+CGG | + | chr6_4:58753625-58753644 | Msa0992020:exon | 50.0% | |
| AGCTCCGACACAACTCAAAG+AGG | - | chr6_4:58754265-58754284 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr6_4:58754272-58754291 | Msa0992020:intron | 50.0% | |
| AAGTGGGCACAACTTGTGTC+GGG | - | chr6_4:58755060-58755079 | None:intergenic | 50.0% | |
| GAATCGTCTTGGTTGGGGTC+AGG | + | chr6_4:58753865-58753884 | Msa0992020:CDS | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr6_4:58754271-58754290 | Msa0992020:intron | 55.0% | |
| AACTTGTGTCGGGGACTCGA+GGG | - | chr6_4:58755050-58755069 | None:intergenic | 55.0% | |
| AGTGGGCACAACTTGTGTCG+GGG | - | chr6_4:58755059-58755078 | None:intergenic | 55.0% | |
| GAATCGTCTTGGTTGGGGTC+AGG | + | chr6_4:58753865-58753884 | Msa0992020:CDS | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr6_4:58754271-58754290 | Msa0992020:intron | 55.0% | |
| AACTTGTGTCGGGGACTCGA+GGG | - | chr6_4:58755050-58755069 | None:intergenic | 55.0% | |
| AGTGGGCACAACTTGTGTCG+GGG | - | chr6_4:58755059-58755078 | None:intergenic | 55.0% | |
| !! | GGGGACTCGAGGGTATCTAG+GGG | - | chr6_4:58755040-58755059 | None:intergenic | 60.0% |
| !! | CGGGGACTCGAGGGTATCTA+GGG | - | chr6_4:58755041-58755060 | None:intergenic | 60.0% |
| !! | TCGGGGACTCGAGGGTATCT+AGG | - | chr6_4:58755042-58755061 | None:intergenic | 60.0% |
| CAACTTGTGTCGGGGACTCG+AGG | - | chr6_4:58755051-58755070 | None:intergenic | 60.0% | |
| !! | GGGGACTCGAGGGTATCTAG+GGG | - | chr6_4:58755040-58755059 | None:intergenic | 60.0% |
| !! | CGGGGACTCGAGGGTATCTA+GGG | - | chr6_4:58755041-58755060 | None:intergenic | 60.0% |
| !! | TCGGGGACTCGAGGGTATCT+AGG | - | chr6_4:58755042-58755061 | None:intergenic | 60.0% |
| CAACTTGTGTCGGGGACTCG+AGG | - | chr6_4:58755051-58755070 | None:intergenic | 60.0% | |
| TGTTTCTCCGAGCGACGGCG+CGG | + | chr6_4:58753630-58753649 | Msa0992020:CDS | 65.0% | |
| TGTTTCTCCGAGCGACGGCG+CGG | + | chr6_4:58753630-58753649 | Msa0992020:CDS | 65.0% | |
| TCAATGGCCGCGCCGTCGCT+CGG | - | chr6_4:58753640-58753659 | None:intergenic | 70.0% | |
| TCAATGGCCGCGCCGTCGCT+CGG | - | chr6_4:58753640-58753659 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 58753607 | 58755842 | 58753607 | ID=Msa0992020;Name=Msa0992020 |
| chr6_4 | mRNA | 58753607 | 58755842 | 58753607 | ID=Msa0992020-mRNA-1;Parent=Msa0992020;Name=Msa0992020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=22|1|1|1|1|1|2|179|135 |
| chr6_4 | exon | 58753607 | 58753944 | 58753607 | ID=Msa0992020-mRNA-1:exon:11614;Parent=Msa0992020-mRNA-1 |
| chr6_4 | exon | 58755572 | 58755842 | 58755572 | ID=Msa0992020-mRNA-1:exon:11615;Parent=Msa0992020-mRNA-1 |
| chr6_4 | five_prime_UTR | 58753607 | 58753628 | 58753607 | ID=Msa0992020-mRNA-1:five_prime_utr;Parent=Msa0992020-mRNA-1 |
| chr6_4 | CDS | 58753629 | 58753944 | 58753629 | ID=Msa0992020-mRNA-1:cds;Parent=Msa0992020-mRNA-1 |
| chr6_4 | CDS | 58755572 | 58755663 | 58755572 | ID=Msa0992020-mRNA-1:cds;Parent=Msa0992020-mRNA-1 |
| chr6_4 | three_prime_UTR | 58755664 | 58755842 | 58755664 | ID=Msa0992020-mRNA-1:three_prime_utr;Parent=Msa0992020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
