Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478440 | XP_003603701.1 | 90.202 | 347 | 12 | 4 | 1 | 337 | 1 | 335 | 0.0 | 617 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478440 | sp|Q9FGF0|PGML1_ARATH | 70.956 | 272 | 78 | 1 | 53 | 324 | 1 | 271 | 2.25e-145 | 414 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478440 | G7J452 | 90.202 | 347 | 12 | 4 | 1 | 337 | 1 | 335 | 0.0 | 617 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0384600 | Msa0478440 | 0.814922 | 1.203951e-51 | -8.615850e-47 |
Msa0434670 | Msa0478440 | 0.821090 | 4.856097e-53 | -8.615850e-47 |
Msa0478440 | Msa0522550 | 0.927387 | 1.261258e-91 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478440 | MtrunA17_Chr3g0141101 | 90.202 | 347 | 12 | 4 | 1 | 337 | 1 | 335 | 0.0 | 617 |
Msa0478440 | MtrunA17_Chr5g0428091 | 75.812 | 277 | 65 | 2 | 51 | 327 | 37 | 311 | 1.33e-156 | 441 |
Msa0478440 | MtrunA17_Chr4g0049431 | 69.258 | 283 | 85 | 2 | 53 | 334 | 1 | 282 | 3.82e-146 | 413 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478440 | AT5G64460.4 | 70.956 | 272 | 78 | 1 | 53 | 324 | 1 | 271 | 2.29e-146 | 414 |
Msa0478440 | AT5G64460.6 | 70.956 | 272 | 78 | 1 | 53 | 324 | 1 | 271 | 2.29e-146 | 414 |
Msa0478440 | AT5G64460.10 | 70.956 | 272 | 78 | 1 | 53 | 324 | 1 | 271 | 2.29e-146 | 414 |
Msa0478440 | AT5G64460.2 | 70.956 | 272 | 78 | 1 | 53 | 324 | 1 | 271 | 2.29e-146 | 414 |
Msa0478440 | AT5G64460.1 | 70.956 | 272 | 78 | 1 | 53 | 324 | 1 | 271 | 2.29e-146 | 414 |
Msa0478440 | AT5G64460.8 | 70.956 | 272 | 78 | 1 | 53 | 324 | 1 | 271 | 2.29e-146 | 414 |
Msa0478440 | AT5G64460.3 | 70.956 | 272 | 78 | 1 | 53 | 324 | 1 | 271 | 2.29e-146 | 414 |
Msa0478440 | AT1G58280.1 | 64.026 | 303 | 105 | 2 | 27 | 329 | 20 | 318 | 1.32e-139 | 398 |
Msa0478440 | AT1G58280.3 | 62.460 | 309 | 98 | 2 | 21 | 329 | 13 | 303 | 2.68e-139 | 397 |
Msa0478440 | AT1G58280.4 | 66.906 | 278 | 91 | 1 | 52 | 329 | 26 | 302 | 5.68e-139 | 396 |
Msa0478440 | AT1G58280.2 | 59.146 | 328 | 105 | 3 | 27 | 329 | 20 | 343 | 2.37e-133 | 384 |
Msa0478440 | AT2G17280.1 | 66.920 | 263 | 86 | 1 | 62 | 323 | 8 | 270 | 3.04e-133 | 380 |
Msa0478440 | AT2G17280.2 | 66.920 | 263 | 86 | 1 | 62 | 323 | 8 | 270 | 3.04e-133 | 380 |
Msa0478440 | AT5G64460.11 | 71.552 | 232 | 66 | 0 | 93 | 324 | 1 | 232 | 1.71e-124 | 357 |
Msa0478440 | AT5G64460.7 | 71.552 | 232 | 66 | 0 | 93 | 324 | 1 | 232 | 1.71e-124 | 357 |
Msa0478440 | AT5G64460.9 | 71.552 | 232 | 66 | 0 | 93 | 324 | 1 | 232 | 1.71e-124 | 357 |
Msa0478440 | AT5G64460.5 | 71.053 | 190 | 55 | 0 | 135 | 324 | 1 | 190 | 6.94e-101 | 296 |
Msa0478440 | AT1G09935.1 | 52.632 | 247 | 97 | 1 | 61 | 307 | 5 | 231 | 1.33e-89 | 268 |
Msa0478440 | AT1G09935.2 | 52.479 | 242 | 95 | 1 | 61 | 302 | 5 | 226 | 2.88e-88 | 265 |
Msa0478440 | AT1G09932.3 | 44.939 | 247 | 122 | 1 | 53 | 299 | 1 | 233 | 3.62e-67 | 211 |
Msa0478440 | AT1G09932.1 | 45.082 | 244 | 120 | 1 | 53 | 296 | 1 | 230 | 1.08e-66 | 211 |
Msa0478440 | AT1G09932.2 | 45.740 | 223 | 107 | 1 | 74 | 296 | 15 | 223 | 1.06e-62 | 200 |
Msa0478440 | AT1G09932.4 | 40.164 | 244 | 107 | 2 | 53 | 296 | 1 | 205 | 1.05e-49 | 166 |
Find 107 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGCTGACGAGAAACTTTC+TGG | 0.194341 | 3_3:+83176828 | Msa0478440:CDS |
CAATTGCCGGAAACATATTT+TGG | 0.207388 | 3_3:-83175286 | None:intergenic |
GCCATTGATGAATGTTAAAT+TGG | 0.230649 | 3_3:-83176958 | None:intergenic |
TATTTACTTCCCTTCTTTCT+AGG | 0.234668 | 3_3:-83177081 | None:intergenic |
CATCATGTTTGTTACTTTGA+TGG | 0.261267 | 3_3:-83176858 | None:intergenic |
CAAACAGCAGTTGGAGTCTT+TGG | 0.272032 | 3_3:+83174348 | Msa0478440:CDS |
TCATTCTTCTCTCTAATATC+AGG | 0.303717 | 3_3:-83175489 | None:intergenic |
TTCCGAAAGCACTTAGAGTA+TGG | 0.304941 | 3_3:-83176231 | None:intergenic |
AGTATTGGTGGTAGCCAAAA+AGG | 0.304949 | 3_3:+83177112 | Msa0478440:three_prime_UTR |
AATTATATGCTGATTTGATT+TGG | 0.310510 | 3_3:-83171831 | None:intergenic |
GAGAAAGCGGGAAGAGAATA+AGG | 0.311297 | 3_3:-83177024 | None:intergenic |
CTTTACTAAAACCATATAAC+TGG | 0.314598 | 3_3:-83176890 | None:intergenic |
TTCCATACTCTAAGTGCTTT+CGG | 0.324037 | 3_3:+83176229 | Msa0478440:CDS |
TGAGTACCAAAATATGTTTC+CGG | 0.340527 | 3_3:+83175280 | Msa0478440:CDS |
GCAGATATGGATACTTCTTC+AGG | 0.355326 | 3_3:+83172735 | Msa0478440:intron |
GTTCTTGTTTAATAAAATAG+TGG | 0.400783 | 3_3:-83171930 | None:intergenic |
AGAGCTTTGCCGCGAGCATT+TGG | 0.411847 | 3_3:+83174482 | Msa0478440:CDS |
TCATACGATAAGTACGCATC+AGG | 0.429296 | 3_3:-83172948 | None:intergenic |
TTCAGTGGTCATCATTGATA+GGG | 0.433878 | 3_3:+83176644 | Msa0478440:CDS |
GTTCAGTGGTCATCATTGAT+AGG | 0.440836 | 3_3:+83176643 | Msa0478440:CDS |
CTTCAACATTGTGAAACCCT+TGG | 0.441453 | 3_3:-83172914 | None:intergenic |
CAAGTCTCACCCCTCTCGGC+TGG | 0.443047 | 3_3:+83172982 | Msa0478440:CDS |
GAGTCCTCTACCAACTTTCC+TGG | 0.444606 | 3_3:+83176771 | Msa0478440:CDS |
ATTTACTTCCCTTCTTTCTA+GGG | 0.445222 | 3_3:-83177080 | None:intergenic |
TCCAATTTAACATTCATCAA+TGG | 0.461919 | 3_3:+83176957 | Msa0478440:three_prime_UTR |
TACAACGGTGCAACGGGTAA+AGG | 0.462790 | 3_3:-83172767 | None:intergenic |
TTCAACATTGTGAAACCCTT+GGG | 0.465042 | 3_3:-83172913 | None:intergenic |
CTTCTTTCACCCTAGAAAGA+AGG | 0.465149 | 3_3:+83177071 | Msa0478440:three_prime_UTR |
AGAATGAAGAAGTTGCTGCC+AGG | 0.468158 | 3_3:+83175505 | Msa0478440:CDS |
CACCCCTCTCGGCTGGAAGC+AGG | 0.471269 | 3_3:+83172989 | Msa0478440:CDS |
CTTTCCTGGCAAAATTCCAC+AGG | 0.484324 | 3_3:+83176785 | Msa0478440:CDS |
CAAGGGTTTCACAATGTTGA+AGG | 0.484805 | 3_3:+83172915 | Msa0478440:CDS |
GATGCAAGTCTCACCCCTCT+CGG | 0.486259 | 3_3:+83172978 | Msa0478440:CDS |
TAGAGTAATGCTTACTAGTA+CGG | 0.487552 | 3_3:+83177187 | Msa0478440:three_prime_UTR |
TTGCTGACGAGAAACTTTCT+GGG | 0.489770 | 3_3:+83176829 | Msa0478440:CDS |
TTTCTCGTCAGCAACATCAC+TGG | 0.499214 | 3_3:-83176820 | None:intergenic |
GACTCCAACTGCTGTTTGCA+TGG | 0.504794 | 3_3:-83174343 | None:intergenic |
GTAAATATCTGTGAAAGTAT+TGG | 0.508955 | 3_3:+83177097 | Msa0478440:three_prime_UTR |
TAAAATGTATCATGAGAAAG+CGG | 0.514134 | 3_3:-83177037 | None:intergenic |
GACGAGAAACTTTCTGGGAG+TGG | 0.517322 | 3_3:+83176834 | Msa0478440:CDS |
GAAGATACGCGAAGTGAATG+TGG | 0.521298 | 3_3:-83172025 | None:intergenic |
CTTCTTTCTAGGGTGAAAGA+AGG | 0.522353 | 3_3:-83177070 | None:intergenic |
GTTATGGACACGCAAAGAAA+AGG | 0.523784 | 3_3:+83176174 | Msa0478440:CDS |
CCGTTGTAAAACTCTTCACC+TGG | 0.524813 | 3_3:+83172782 | Msa0478440:CDS |
GAATGAAGAAGTTGCTGCCA+GGG | 0.525220 | 3_3:+83175506 | Msa0478440:CDS |
CAAAGCTCTACTGCTACAAA+TGG | 0.525638 | 3_3:-83174468 | None:intergenic |
AACGTTGAGATACGCGGGGA+TGG | 0.527877 | 3_3:-83172000 | None:intergenic |
TGTGGTGGTGCTGTTATAGT+TGG | 0.528369 | 3_3:-83171905 | None:intergenic |
TTCTCGTCAGCAACATCACT+GGG | 0.530667 | 3_3:-83176819 | None:intergenic |
TTCTTTCACCCTAGAAAGAA+GGG | 0.535795 | 3_3:+83177072 | Msa0478440:three_prime_UTR |
TAATCTGAGAGAGCATGTTA+AGG | 0.541064 | 3_3:+83173254 | Msa0478440:CDS |
CAAAATCGGAGCCATGGTAA+AGG | 0.543335 | 3_3:+83177139 | Msa0478440:three_prime_UTR |
AATATCTGTGAAAGTATTGG+TGG | 0.546036 | 3_3:+83177100 | Msa0478440:three_prime_UTR |
GGTTGTGATGAAATGAGTGT+GGG | 0.547053 | 3_3:-83171974 | None:intergenic |
AGGTTGTGATGAAATGAGTG+TGG | 0.547493 | 3_3:-83171975 | None:intergenic |
ACAGCAGTTGGAGTCTTTGG+TGG | 0.550104 | 3_3:+83174351 | Msa0478440:CDS |
AGTTGGAGTCTTTGGTGGTG+AGG | 0.551014 | 3_3:+83174356 | Msa0478440:CDS |
GGCAATCAAAATCGGAGCCA+TGG | 0.552136 | 3_3:+83177133 | Msa0478440:three_prime_UTR |
ACGAGAAACTTTCTGGGAGT+GGG | 0.556422 | 3_3:+83176835 | Msa0478440:CDS |
TGGTGCTGTTATAGTTGGCA+TGG | 0.557569 | 3_3:-83171900 | None:intergenic |
CTTCGCGTATCTTCTCGCTC+AGG | 0.567075 | 3_3:+83172034 | Msa0478440:CDS |
TTACCTGCTTCCAGCCGAGA+GGG | 0.567288 | 3_3:-83172992 | None:intergenic |
TTTGCCAGGAAAGTTGGTAG+AGG | 0.574696 | 3_3:-83176775 | None:intergenic |
TGGAGAACGTTGAGATACGC+GGG | 0.576761 | 3_3:-83172005 | None:intergenic |
TTTAATAAAATAGTGGAATG+TGG | 0.579461 | 3_3:-83171923 | None:intergenic |
GTGGAGAACGTTGAGATACG+CGG | 0.579514 | 3_3:-83172006 | None:intergenic |
ACATTCTCATTCATCAGAGG+AGG | 0.587925 | 3_3:-83174402 | None:intergenic |
TCCTCTGATGAATGAGAATG+TGG | 0.595062 | 3_3:+83174404 | Msa0478440:CDS |
ATTGCTGTTGTTAGCCACAG+TGG | 0.597876 | 3_3:+83176199 | Msa0478440:CDS |
GGTGGTGAGGCACACACTGA+TGG | 0.600230 | 3_3:+83174369 | Msa0478440:CDS |
CATTCTCATTCATCAGAGGA+GGG | 0.600745 | 3_3:-83174401 | None:intergenic |
TGAGATACGCGGGGATGGCG+AGG | 0.600976 | 3_3:-83171995 | None:intergenic |
ATAAAGTTATACCTCAACAA+GGG | 0.601532 | 3_3:-83173318 | None:intergenic |
TCCACATTCTCATTCATCAG+AGG | 0.604283 | 3_3:-83174405 | None:intergenic |
AGGACCATGCAAACAGCAGT+TGG | 0.604452 | 3_3:+83174339 | Msa0478440:intron |
TAAAGTTATACCTCAACAAG+GGG | 0.604692 | 3_3:-83173317 | None:intergenic |
CAACATCACTGGGAAGGTCA+AGG | 0.605658 | 3_3:-83176809 | None:intergenic |
AAAATGTATCATGAGAAAGC+GGG | 0.606668 | 3_3:-83177036 | None:intergenic |
CATCCTTGTGATAAGAGAAG+AGG | 0.612650 | 3_3:+83175251 | Msa0478440:CDS |
TCAGTGGTCATCATTGATAG+GGG | 0.614829 | 3_3:+83176645 | Msa0478440:CDS |
AGAGAGCATGTTAAGGCAAG+CGG | 0.615902 | 3_3:+83173261 | Msa0478440:CDS |
ATTCTCATTCATCAGAGGAG+GGG | 0.621059 | 3_3:-83174400 | None:intergenic |
CGTCAGCAACATCACTGGGA+AGG | 0.624278 | 3_3:-83176815 | None:intergenic |
AGCTCTACTGCTACAAATGG+TGG | 0.625499 | 3_3:-83174465 | None:intergenic |
TTGTGATGAAATGAGTGTGG+GGG | 0.627609 | 3_3:-83171972 | None:intergenic |
TGTGATGAAATGAGTGTGGG+GGG | 0.629004 | 3_3:-83171971 | None:intergenic |
ATGCAGGTTAGACATGCCCA+AGG | 0.629064 | 3_3:+83172897 | Msa0478440:intron |
AATAAAGTTATACCTCAACA+AGG | 0.644424 | 3_3:-83173319 | None:intergenic |
TACCTGCTTCCAGCCGAGAG+GGG | 0.644968 | 3_3:-83172991 | None:intergenic |
CTGGGAAGGTCAAGGCCCTG+TGG | 0.647778 | 3_3:-83176801 | None:intergenic |
TGCAGGTTAGACATGCCCAA+GGG | 0.651450 | 3_3:+83172898 | Msa0478440:intron |
ATGCCTCTTCTCTTATCACA+AGG | 0.652179 | 3_3:-83175254 | None:intergenic |
TAATTGTGAGCTGCGTTCAG+TGG | 0.658742 | 3_3:+83176629 | Msa0478440:CDS |
CATACGATAAGTACGCATCA+GGG | 0.659486 | 3_3:-83172947 | None:intergenic |
AATGAAGAAGTTGCTGCCAG+GGG | 0.664314 | 3_3:+83175507 | Msa0478440:CDS |
TTTCCTGGCAAAATTCCACA+GGG | 0.673235 | 3_3:+83176786 | Msa0478440:CDS |
GTTGTGATGAAATGAGTGTG+GGG | 0.677612 | 3_3:-83171973 | None:intergenic |
CAGTGGTCATCATTGATAGG+GGG | 0.678974 | 3_3:+83176646 | Msa0478440:CDS |
ATTACCTGCTTCCAGCCGAG+AGG | 0.685732 | 3_3:-83172993 | None:intergenic |
GTGATGAAATGAGTGTGGGG+GGG | 0.694618 | 3_3:-83171970 | None:intergenic |
AATAAAATAGTGGAATGTGG+TGG | 0.696828 | 3_3:-83171920 | None:intergenic |
CACCACATACCAAATGCTCG+CGG | 0.697669 | 3_3:-83174491 | None:intergenic |
AGGGTGAAAGAAGGTGCCAG+AGG | 0.702493 | 3_3:-83177061 | None:intergenic |
TGTTTAGATAGAGCGCGATG+AGG | 0.707425 | 3_3:+83175452 | Msa0478440:intron |
AAAGTTATACCTCAACAAGG+GGG | 0.748645 | 3_3:-83173316 | None:intergenic |
GGAGAACGTTGAGATACGCG+GGG | 0.751908 | 3_3:-83172004 | None:intergenic |
TATGGAATAGAAAACCACTG+TGG | 0.804378 | 3_3:-83176213 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTATTTTATAAAAAGTAAT+TGG | + | chr3_3:83175169-83175188 | Msa0478440:intron | 10.0% |
!! | TTTGCATTTAATTATTTCAA+TGG | - | chr3_3:83172342-83172361 | None:intergenic | 15.0% |
!! | ACTAATATAACATTCAAAAT+TGG | + | chr3_3:83172433-83172452 | Msa0478440:intron | 15.0% |
!!! | AATAACTAGTTCAATTTTTT+TGG | - | chr3_3:83173292-83173311 | None:intergenic | 15.0% |
!! | AGTAAATTAGTAACAAAATT+AGG | - | chr3_3:83173360-83173379 | None:intergenic | 15.0% |
!! | TAAAATAAAGCAAAGTAAAT+TGG | - | chr3_3:83174820-83174839 | None:intergenic | 15.0% |
!!! | TTTTATAAAATAAGCAAGAA+AGG | - | chr3_3:83175163-83175182 | None:intergenic | 15.0% |
!! | GAAAAAAAATCACATTATTA+TGG | + | chr3_3:83175653-83175672 | Msa0478440:intron | 15.0% |
!! | ACACATAATTAATAATAAGA+CGG | + | chr3_3:83176363-83176382 | Msa0478440:intron | 15.0% |
!!! | AATTATATGCTGATTTGATT+TGG | - | chr3_3:83171834-83171853 | None:intergenic | 20.0% |
!!! | TTTAATAAAATAGTGGAATG+TGG | - | chr3_3:83171926-83171945 | None:intergenic | 20.0% |
!!! | GTTCTTGTTTAATAAAATAG+TGG | - | chr3_3:83171933-83171952 | None:intergenic | 20.0% |
!!! | TTGAAAAAATCATTTTCTTG+TGG | + | chr3_3:83172858-83172877 | Msa0478440:intron | 20.0% |
!!! | TATTCCAGGTTAATTTTTAA+TGG | + | chr3_3:83173199-83173218 | Msa0478440:intron | 20.0% |
!! | GGTATAACTTTATTGTAATT+TGG | + | chr3_3:83173328-83173347 | Msa0478440:intron | 20.0% |
!!! | ATTTTCTGTTATAAAAGAGA+GGG | + | chr3_3:83173552-83173571 | Msa0478440:intron | 20.0% |
!!! | TTGTTGTTTCATTTCATATA+TGG | - | chr3_3:83173892-83173911 | None:intergenic | 20.0% |
!! | TCTTAAACATAAAACTGTAT+GGG | - | chr3_3:83174170-83174189 | None:intergenic | 20.0% |
!! | ATCTTAAACATAAAACTGTA+TGG | - | chr3_3:83174171-83174190 | None:intergenic | 20.0% |
!!! | CTCTTTAAAGCATTTATAAA+GGG | - | chr3_3:83174599-83174618 | None:intergenic | 20.0% |
!!! | CTTTATAAATGCTTTAAAGA+GGG | + | chr3_3:83174598-83174617 | Msa0478440:intron | 20.0% |
!! | TCCTAATTAATTAACAAAGA+AGG | - | chr3_3:83174702-83174721 | None:intergenic | 20.0% |
!!! | AGTTAGTTTGAGTATTTTTA+TGG | + | chr3_3:83175207-83175226 | Msa0478440:intron | 20.0% |
!!! | AGTCTTATTGAAAAAGAAAT+AGG | + | chr3_3:83175606-83175625 | Msa0478440:intron | 20.0% |
!!! | GTCTTATTGAAAAAGAAATA+GGG | + | chr3_3:83175607-83175626 | Msa0478440:intron | 20.0% |
!!! | AAACAAGAGGTAAATTTTTA+TGG | - | chr3_3:83175831-83175850 | None:intergenic | 20.0% |
!! | TTGAAACAAATAGTTGTATT+AGG | + | chr3_3:83176107-83176126 | Msa0478440:intron | 20.0% |
!!! | AATAAGACGGTTTTTTTTTT+TGG | + | chr3_3:83176376-83176395 | Msa0478440:intron | 20.0% |
!!! | GTTTGATTTTAATTTGTTGT+TGG | + | chr3_3:83176470-83176489 | Msa0478440:intron | 20.0% |
!! | GTATAAGTTATTCTGTAAAT+AGG | - | chr3_3:83176683-83176702 | None:intergenic | 20.0% |
!!! | TTTTGTGTATTCATTTTTAC+AGG | + | chr3_3:83176733-83176752 | Msa0478440:intron | 20.0% |
!! | TGTTTACATGTAAAAATCAA+TGG | - | chr3_3:83176983-83177002 | None:intergenic | 20.0% |
! | TGATCTAATTAAGCAAAGAA+GGG | - | chr3_3:83172132-83172151 | None:intergenic | 25.0% |
! | TTGATCTAATTAAGCAAAGA+AGG | - | chr3_3:83172133-83172152 | None:intergenic | 25.0% |
! | TGTTCAAGAAGACAATATAT+GGG | + | chr3_3:83172542-83172561 | Msa0478440:intron | 25.0% |
! | AAAATTAACCTGGAATATTG+CGG | - | chr3_3:83173196-83173215 | None:intergenic | 25.0% |
! | ATAAAGTTATACCTCAACAA+GGG | - | chr3_3:83173321-83173340 | None:intergenic | 25.0% |
! | AATAAAGTTATACCTCAACA+AGG | - | chr3_3:83173322-83173341 | None:intergenic | 25.0% |
!!! | GTCAAAGATTTGTTACTTAT+TGG | + | chr3_3:83173390-83173409 | Msa0478440:intron | 25.0% |
!! | GATTTTCTGTTATAAAAGAG+AGG | + | chr3_3:83173551-83173570 | Msa0478440:intron | 25.0% |
!! | TTTTCTGTTATAAAAGAGAG+GGG | + | chr3_3:83173553-83173572 | Msa0478440:intron | 25.0% |
! | TTGACAAATATTGTTAGAGT+TGG | + | chr3_3:83173594-83173613 | Msa0478440:intron | 25.0% |
!! | AAATATTGTTAGAGTTGGTT+AGG | + | chr3_3:83173599-83173618 | Msa0478440:intron | 25.0% |
! | AACAACTATATATCATGGAA+TGG | - | chr3_3:83173737-83173756 | None:intergenic | 25.0% |
! | CAAGAAACAACTATATATCA+TGG | - | chr3_3:83173742-83173761 | None:intergenic | 25.0% |
!!! | ATAGTTGTTTCTTGACTTTA+CGG | + | chr3_3:83173748-83173767 | Msa0478440:intron | 25.0% |
! | AAGAGTCATAAACTAGATAT+TGG | - | chr3_3:83173986-83174005 | None:intergenic | 25.0% |
! | ATAAGCTCAATCATATTTGA+GGG | - | chr3_3:83174133-83174152 | None:intergenic | 25.0% |
! | TATAAGCTCAATCATATTTG+AGG | - | chr3_3:83174134-83174153 | None:intergenic | 25.0% |
!!! | ACAGTTTTATGTTTAAGATG+TGG | + | chr3_3:83174172-83174191 | Msa0478440:intron | 25.0% |
!!! | TCCTCTAGATTATTTTTTTC+CGG | + | chr3_3:83174279-83174298 | Msa0478440:intron | 25.0% |
! | ATTGCTAAATATTTCATTGC+AGG | + | chr3_3:83174319-83174338 | Msa0478440:intron | 25.0% |
!! | AATTTTATTGCTTTGCAGTT+TGG | + | chr3_3:83174519-83174538 | Msa0478440:intron | 25.0% |
!! | TTTAAAGCATTTATAAAGGG+AGG | - | chr3_3:83174596-83174615 | None:intergenic | 25.0% |
!!! | CCTCTTTAAAGCATTTATAA+AGG | - | chr3_3:83174600-83174619 | None:intergenic | 25.0% |
!!! | CCTTTATAAATGCTTTAAAG+AGG | + | chr3_3:83174597-83174616 | Msa0478440:intron | 25.0% |
! | GAAATGCTTAAATTACATGT+AGG | + | chr3_3:83174653-83174672 | Msa0478440:intron | 25.0% |
! | GCCTTCTTTGTTAATTAATT+AGG | + | chr3_3:83174698-83174717 | Msa0478440:intron | 25.0% |
! | GGATTAAGGAGTAAAATTAA+GGG | - | chr3_3:83174799-83174818 | None:intergenic | 25.0% |
! | TGGATTAAGGAGTAAAATTA+AGG | - | chr3_3:83174800-83174819 | None:intergenic | 25.0% |
! | AAGCAAAGTAAATTGGATTA+AGG | - | chr3_3:83174813-83174832 | None:intergenic | 25.0% |
!!! | ACCATATTTCTAGTTAATGT+GGG | - | chr3_3:83174940-83174959 | None:intergenic | 25.0% |
!!! | TACCATATTTCTAGTTAATG+TGG | - | chr3_3:83174941-83174960 | None:intergenic | 25.0% |
!!! | TTAGATTTTGGATTTGAGTT+TGG | + | chr3_3:83175003-83175022 | Msa0478440:intron | 25.0% |
!!! | TAGATTTTGGATTTGAGTTT+GGG | + | chr3_3:83175004-83175023 | Msa0478440:intron | 25.0% |
!! | ATTTTCCAGATTTTCTCAAT+CGG | + | chr3_3:83175047-83175066 | Msa0478440:intron | 25.0% |
! | AGTGACTAGATTATTAGATT+AGG | + | chr3_3:83175086-83175105 | Msa0478440:intron | 25.0% |
! | TATAAAATAAGCAAGAAAGG+AGG | - | chr3_3:83175160-83175179 | None:intergenic | 25.0% |
!!! | ATTGATTTTTCACTGGTAAA+TGG | + | chr3_3:83175305-83175324 | Msa0478440:intron | 25.0% |
!! | ATTTGTTGGTAAGTTATGAA+TGG | + | chr3_3:83175392-83175411 | Msa0478440:intron | 25.0% |
! | AAATCACATTATTATGGTTG+AGG | + | chr3_3:83175659-83175678 | Msa0478440:intron | 25.0% |
! | ATTGGTTAAGAGGTAATAAA+AGG | + | chr3_3:83175735-83175754 | Msa0478440:intron | 25.0% |
! | TTTACTATGTTGCTCTTATA+CGG | + | chr3_3:83175918-83175937 | Msa0478440:intron | 25.0% |
! | TTCTATTCATATCTCTGTAT+TGG | + | chr3_3:83176146-83176165 | Msa0478440:intron | 25.0% |
! | GAATTATCACATTCACATTT+CGG | + | chr3_3:83176332-83176351 | Msa0478440:intron | 25.0% |
!!! | AATTTGCTAATGAACACTAA+AGG | + | chr3_3:83176406-83176425 | Msa0478440:intron | 25.0% |
! | TTTACTCAAAGGATTTCAAT+CGG | - | chr3_3:83176433-83176452 | None:intergenic | 25.0% |
! | AAATCCTTTGAGTAAAAAAC+TGG | + | chr3_3:83176437-83176456 | Msa0478440:intron | 25.0% |
!! | TTTTCCAGTTTTTTACTCAA+AGG | - | chr3_3:83176444-83176463 | None:intergenic | 25.0% |
! | TTAAAAGTCCAATACAAGAA+AGG | - | chr3_3:83176572-83176591 | None:intergenic | 25.0% |
! | AAGTTATTCTGTAAATAGGA+TGG | - | chr3_3:83176679-83176698 | None:intergenic | 25.0% |
!!! | ATTCATTTTTACAGGATGAT+TGG | + | chr3_3:83176741-83176760 | Msa0478440:intron | 25.0% |
! | CTTTACTAAAACCATATAAC+TGG | - | chr3_3:83176893-83176912 | None:intergenic | 25.0% |
! | TCCAATTTAACATTCATCAA+TGG | + | chr3_3:83176957-83176976 | Msa0478440:three_prime_UTR | 25.0% |
! | TAAAATGTATCATGAGAAAG+CGG | - | chr3_3:83177040-83177059 | None:intergenic | 25.0% |
!! | GTAAATATCTGTGAAAGTAT+TGG | + | chr3_3:83177097-83177116 | Msa0478440:three_prime_UTR | 25.0% |
!!! | TTTTAAAACTACCTTTACCA+TGG | - | chr3_3:83177153-83177172 | None:intergenic | 25.0% |
! | AATAAAATAGTGGAATGTGG+TGG | - | chr3_3:83171923-83171942 | None:intergenic | 30.0% |
! | AAGCAAATCATCGATTAAAC+TGG | - | chr3_3:83172238-83172257 | None:intergenic | 30.0% |
CTGTTCAAGAAGACAATATA+TGG | + | chr3_3:83172541-83172560 | Msa0478440:intron | 30.0% | |
GCAGATATAGTGATATACTA+AGG | - | chr3_3:83173096-83173115 | None:intergenic | 30.0% | |
AAATTAACCTGGAATATTGC+GGG | - | chr3_3:83173195-83173214 | None:intergenic | 30.0% | |
! | TCCAGGTTAATTTTTAATGG+TGG | + | chr3_3:83173202-83173221 | Msa0478440:intron | 30.0% |
TCCACCATTAAAAATTAACC+TGG | - | chr3_3:83173206-83173225 | None:intergenic | 30.0% | |
! | TATTTGTTGCTCTATATGAC+AGG | + | chr3_3:83173227-83173246 | Msa0478440:intron | 30.0% |
TAAAGTTATACCTCAACAAG+GGG | - | chr3_3:83173320-83173339 | None:intergenic | 30.0% | |
ATGTGTATAAGAAGTCTGAT+AGG | + | chr3_3:83173448-83173467 | Msa0478440:intron | 30.0% | |
AACAGAAAATCCCCTAAATT+CGG | - | chr3_3:83173542-83173561 | None:intergenic | 30.0% | |
!! | TAGTTGTTTCTTGACTTTAC+GGG | + | chr3_3:83173749-83173768 | Msa0478440:intron | 30.0% |
GATTTGTAAAGGACTTTGAT+AGG | - | chr3_3:83173826-83173845 | None:intergenic | 30.0% | |
ATCAAAGTCCTTTACAAATC+AGG | + | chr3_3:83173826-83173845 | Msa0478440:intron | 30.0% | |
! | CGATTATTCCTGATTTGTAA+AGG | - | chr3_3:83173837-83173856 | None:intergenic | 30.0% |
ATTGCAGAATCGAACTTAAA+TGG | + | chr3_3:83173866-83173885 | Msa0478440:intron | 30.0% | |
! | TTTAGAGTTTCATTCATCCT+AGG | - | chr3_3:83173956-83173975 | None:intergenic | 30.0% |
ATGATTGAGCTTATAAAGAG+TGG | + | chr3_3:83174139-83174158 | Msa0478440:intron | 30.0% | |
ACCGGAAAAAAATAATCTAG+AGG | - | chr3_3:83174283-83174302 | None:intergenic | 30.0% | |
!!! | TCTAGATTATTTTTTTCCGG+TGG | + | chr3_3:83174282-83174301 | Msa0478440:intron | 30.0% |
TAACAAAGAAGGCTTAAAGA+TGG | - | chr3_3:83174691-83174710 | None:intergenic | 30.0% | |
CAAACTATTGTACATGACTT+TGG | - | chr3_3:83174858-83174877 | None:intergenic | 30.0% | |
AGTCATGTACAATAGTTTGA+AGG | + | chr3_3:83174859-83174878 | Msa0478440:intron | 30.0% | |
TCCCACATTAACTAGAAATA+TGG | + | chr3_3:83174936-83174955 | Msa0478440:intron | 30.0% | |
AAGTAGTCCTTATATAACTC+AGG | + | chr3_3:83174962-83174981 | Msa0478440:intron | 30.0% | |
AGAATTGCCTGAGTTATATA+AGG | - | chr3_3:83174972-83174991 | None:intergenic | 30.0% | |
AATCCAAAATCTAACTCAAG+TGG | - | chr3_3:83174997-83175016 | None:intergenic | 30.0% | |
AGAAAATCTGGAAAATCCTT+GGG | - | chr3_3:83175043-83175062 | None:intergenic | 30.0% | |
TGAGTACCAAAATATGTTTC+CGG | + | chr3_3:83175280-83175299 | Msa0478440:CDS | 30.0% | |
! | TTTTGTTCTGATGCATTTGT+TGG | + | chr3_3:83175378-83175397 | Msa0478440:intron | 30.0% |
GGTAAGTTATGAATGGTATT+TGG | + | chr3_3:83175399-83175418 | Msa0478440:intron | 30.0% | |
TCATTCTTCTCTCTAATATC+AGG | - | chr3_3:83175492-83175511 | None:intergenic | 30.0% | |
CATTATTATGGTTGAGGTTT+AGG | + | chr3_3:83175665-83175684 | Msa0478440:intron | 30.0% | |
! | CTTTTCCTTAGGGTAATTTA+GGG | + | chr3_3:83175693-83175712 | Msa0478440:intron | 30.0% |
TATTACCCTAAATTACCCTA+AGG | - | chr3_3:83175701-83175720 | None:intergenic | 30.0% | |
CCTTTCTGACGAATAAAAAA+AGG | - | chr3_3:83175891-83175910 | None:intergenic | 30.0% | |
!!! | CCTTTTTTTATTCGTCAGAA+AGG | + | chr3_3:83175888-83175907 | Msa0478440:intron | 30.0% |
! | TATACGGAGTATTTATGAGT+TGG | + | chr3_3:83175934-83175953 | Msa0478440:intron | 30.0% |
! | TTATGAGTTGGATAGGAATA+TGG | + | chr3_3:83175946-83175965 | Msa0478440:intron | 30.0% |
! | TAAGGTTTGGTTGTTATTGT+TGG | + | chr3_3:83176027-83176046 | Msa0478440:intron | 30.0% |
AGACATTCAGATTATGCATA+TGG | + | chr3_3:83176073-83176092 | Msa0478440:intron | 30.0% | |
ATAGTTGTATTAGGCCATAA+TGG | + | chr3_3:83176116-83176135 | Msa0478440:intron | 30.0% | |
AATAGAACACATGACCATTA+TGG | - | chr3_3:83176133-83176152 | None:intergenic | 30.0% | |
!! | CATCATGTTTGTTACTTTGA+TGG | - | chr3_3:83176861-83176880 | None:intergenic | 30.0% |
GCCATTGATGAATGTTAAAT+TGG | - | chr3_3:83176961-83176980 | None:intergenic | 30.0% | |
AAAATGTATCATGAGAAAGC+GGG | - | chr3_3:83177039-83177058 | None:intergenic | 30.0% | |
!! | TCATGATACATTTTAACCTC+TGG | + | chr3_3:83177045-83177064 | Msa0478440:three_prime_UTR | 30.0% |
ATTTACTTCCCTTCTTTCTA+GGG | - | chr3_3:83177083-83177102 | None:intergenic | 30.0% | |
TATTTACTTCCCTTCTTTCT+AGG | - | chr3_3:83177084-83177103 | None:intergenic | 30.0% | |
!! | AATATCTGTGAAAGTATTGG+TGG | + | chr3_3:83177100-83177119 | Msa0478440:three_prime_UTR | 30.0% |
TAGAGTAATGCTTACTAGTA+CGG | + | chr3_3:83177187-83177206 | Msa0478440:three_prime_UTR | 30.0% | |
AAGAAGGGAGAAAACGAAAT+TGG | - | chr3_3:83172117-83172136 | None:intergenic | 35.0% | |
TTCTGTTATGTACTCGTCAT+TGG | + | chr3_3:83172194-83172213 | Msa0478440:intron | 35.0% | |
TCTGTTATGTACTCGTCATT+GGG | + | chr3_3:83172195-83172214 | Msa0478440:intron | 35.0% | |
! | AAAAGCACACAACACAAGTT+TGG | - | chr3_3:83172517-83172536 | None:intergenic | 35.0% |
CTTTCATGTCATTGCAGATA+TGG | + | chr3_3:83172722-83172741 | Msa0478440:intron | 35.0% | |
!!! | GCAATTTTAGCTTTGTGCAT+TGG | + | chr3_3:83172811-83172830 | Msa0478440:intron | 35.0% |
ACTTATCCAAACTTGTATGC+AGG | + | chr3_3:83172881-83172900 | Msa0478440:intron | 35.0% | |
TTCAACATTGTGAAACCCTT+GGG | - | chr3_3:83172916-83172935 | None:intergenic | 35.0% | |
! | CTGTGAGAGTATGCATAATA+AGG | - | chr3_3:83173021-83173040 | None:intergenic | 35.0% |
TTCAAACATTCTGCAGAGAT+TGG | + | chr3_3:83173057-83173076 | Msa0478440:intron | 35.0% | |
AAGCGTTATGCTAGAATAAG+AGG | - | chr3_3:83173155-83173174 | None:intergenic | 35.0% | |
! | TAATCTGAGAGAGCATGTTA+AGG | + | chr3_3:83173254-83173273 | Msa0478440:CDS | 35.0% |
AAAGTTATACCTCAACAAGG+GGG | - | chr3_3:83173319-83173338 | None:intergenic | 35.0% | |
AAGTTGTGTTTGCATGACTT+GGG | - | chr3_3:83173483-83173502 | None:intergenic | 35.0% | |
ACAGAAAATCCCCTAAATTC+GGG | - | chr3_3:83173541-83173560 | None:intergenic | 35.0% | |
CGAATATGAGTCTTTGATTC+TGG | + | chr3_3:83173653-83173672 | Msa0478440:intron | 35.0% | |
! | AACGTTTTACCAATTGTCCT+AGG | + | chr3_3:83173936-83173955 | Msa0478440:intron | 35.0% |
TTCATTCATCCTAGGACAAT+TGG | - | chr3_3:83173948-83173967 | None:intergenic | 35.0% | |
! | TTATGTCTCGTGTTACTCTT+CGG | + | chr3_3:83174026-83174045 | Msa0478440:intron | 35.0% |
TTGAGCTTATAAAGAGTGGT+TGG | + | chr3_3:83174143-83174162 | Msa0478440:intron | 35.0% | |
TGAGCTTATAAAGAGTGGTT+GGG | + | chr3_3:83174144-83174163 | Msa0478440:intron | 35.0% | |
!!! | AGATTATTTTTTTCCGGTGG+TGG | + | chr3_3:83174285-83174304 | Msa0478440:intron | 35.0% |
!!! | GATTATTTTTTTCCGGTGGT+GGG | + | chr3_3:83174286-83174305 | Msa0478440:intron | 35.0% |
!!! | ATTATTTTTTTCCGGTGGTG+GGG | + | chr3_3:83174287-83174306 | Msa0478440:intron | 35.0% |
CTTAAAGATGGTAAGGTAGA+CGG | - | chr3_3:83174679-83174698 | None:intergenic | 35.0% | |
AAGAAGGCTTAAAGATGGTA+AGG | - | chr3_3:83174686-83174705 | None:intergenic | 35.0% | |
ACTTACTGTGTTTGTTTCCT+GGG | + | chr3_3:83174746-83174765 | Msa0478440:intron | 35.0% | |
AGGAGTAAAATTAAGGGACT+AGG | - | chr3_3:83174793-83174812 | None:intergenic | 35.0% | |
!! | TGTTGATTCATTGTAGGATG+AGG | + | chr3_3:83174883-83174902 | Msa0478440:intron | 35.0% |
! | TCACCACTTGAGTTAGATTT+TGG | + | chr3_3:83174991-83175010 | Msa0478440:intron | 35.0% |
GGGAATTCTAATTTAACCCA+AGG | + | chr3_3:83175024-83175043 | Msa0478440:intron | 35.0% | |
GAGAAAATCTGGAAAATCCT+TGG | - | chr3_3:83175044-83175063 | None:intergenic | 35.0% | |
ATGAACCGATTGAGAAAATC+TGG | - | chr3_3:83175055-83175074 | None:intergenic | 35.0% | |
!! | TTTATGGTGTTGCGTATTTC+AGG | + | chr3_3:83175223-83175242 | Msa0478440:intron | 35.0% |
!! | TTATGGTGTTGCGTATTTCA+GGG | + | chr3_3:83175224-83175243 | Msa0478440:intron | 35.0% |
! | CAATTGCCGGAAACATATTT+TGG | - | chr3_3:83175289-83175308 | None:intergenic | 35.0% |
ACCAGTGAAAAATCAATTGC+CGG | - | chr3_3:83175302-83175321 | None:intergenic | 35.0% | |
TCACTGGTAAATGGAAAAAG+TGG | + | chr3_3:83175314-83175333 | Msa0478440:intron | 35.0% | |
ATTATGGTTGAGGTTTAGGA+TGG | + | chr3_3:83175669-83175688 | Msa0478440:intron | 35.0% | |
CCTAAATTACCCTAAGGAAA+AGG | - | chr3_3:83175695-83175714 | None:intergenic | 35.0% | |
! | CCTTTTCCTTAGGGTAATTT+AGG | + | chr3_3:83175692-83175711 | Msa0478440:intron | 35.0% |
TTAGGGTAATAAGTGTCCTA+AGG | + | chr3_3:83175710-83175729 | Msa0478440:intron | 35.0% | |
AATAAGTGTCCTAAGGACAT+TGG | + | chr3_3:83175717-83175736 | Msa0478440:intron | 35.0% | |
GGATTGTTTAAGGAAACAAG+AGG | - | chr3_3:83175844-83175863 | None:intergenic | 35.0% | |
TTTCCTTAAACAATCCCCTT+AGG | + | chr3_3:83175848-83175867 | Msa0478440:intron | 35.0% | |
TTCCTTAAACAATCCCCTTA+GGG | + | chr3_3:83175849-83175868 | Msa0478440:intron | 35.0% | |
AACGTTAATAAGTGCCCTAA+GGG | - | chr3_3:83175866-83175885 | None:intergenic | 35.0% | |
! | GGAGTATTTATGAGTTGGAT+AGG | + | chr3_3:83175939-83175958 | Msa0478440:intron | 35.0% |
!! | TTAAGTGGGATTAGCTACAT+GGG | - | chr3_3:83176002-83176021 | None:intergenic | 35.0% |
!! | ATTAAGTGGGATTAGCTACA+TGG | - | chr3_3:83176003-83176022 | None:intergenic | 35.0% |
ATGTAGCTAATCCCACTTAA+TGG | + | chr3_3:83176002-83176021 | Msa0478440:intron | 35.0% | |
TGTAGCTAATCCCACTTAAT+GGG | + | chr3_3:83176003-83176022 | Msa0478440:intron | 35.0% | |
TAATCCCACTTAATGGGATA+AGG | + | chr3_3:83176009-83176028 | Msa0478440:intron | 35.0% | |
CAAACCTTATCCCATTAAGT+GGG | - | chr3_3:83176016-83176035 | None:intergenic | 35.0% | |
TATGGAATAGAAAACCACTG+TGG | - | chr3_3:83176216-83176235 | None:intergenic | 35.0% | |
TTCCATACTCTAAGTGCTTT+CGG | + | chr3_3:83176229-83176248 | Msa0478440:CDS | 35.0% | |
TTGTCAAGCCTTTCTTGTAT+TGG | + | chr3_3:83176561-83176580 | Msa0478440:intron | 35.0% | |
GCAAAGCTGTGAAAATAGAA+GGG | - | chr3_3:83176609-83176628 | None:intergenic | 35.0% | |
AGCAAAGCTGTGAAAATAGA+AGG | - | chr3_3:83176610-83176629 | None:intergenic | 35.0% | |
TTCAGTGGTCATCATTGATA+GGG | + | chr3_3:83176644-83176663 | Msa0478440:CDS | 35.0% | |
! | TGAGCTTTTCTCCAGTTATA+TGG | + | chr3_3:83176879-83176898 | Msa0478440:three_prime_UTR | 35.0% |
TTCTTTCACCCTAGAAAGAA+GGG | + | chr3_3:83177072-83177091 | Msa0478440:three_prime_UTR | 35.0% | |
GCCAAAAAGGCAATCAAAAT+CGG | + | chr3_3:83177125-83177144 | Msa0478440:three_prime_UTR | 35.0% | |
!!! | TCCGATTTTGATTGCCTTTT+TGG | - | chr3_3:83177129-83177148 | None:intergenic | 35.0% |
TGCTTACTAGTACGGAAAAA+TGG | + | chr3_3:83177195-83177214 | Msa0478440:three_prime_UTR | 35.0% | |
TTGTGATGAAATGAGTGTGG+GGG | - | chr3_3:83171975-83171994 | None:intergenic | 40.0% | |
GTTGTGATGAAATGAGTGTG+GGG | - | chr3_3:83171976-83171995 | None:intergenic | 40.0% | |
GGTTGTGATGAAATGAGTGT+GGG | - | chr3_3:83171977-83171996 | None:intergenic | 40.0% | |
AGGTTGTGATGAAATGAGTG+TGG | - | chr3_3:83171978-83171997 | None:intergenic | 40.0% | |
GAGAGAAAGAGGATCGTAAT+TGG | - | chr3_3:83172062-83172081 | None:intergenic | 40.0% | |
AAGGTGAATGAGAGAGAAAG+AGG | - | chr3_3:83172073-83172092 | None:intergenic | 40.0% | |
TACTCCCTATCTCACAATGA+GGG | - | chr3_3:83172487-83172506 | None:intergenic | 40.0% | |
TTACTCCCTATCTCACAATG+AGG | - | chr3_3:83172488-83172507 | None:intergenic | 40.0% | |
! | GTGACTTGCAAAGTTCATCA+CGG | - | chr3_3:83172684-83172703 | None:intergenic | 40.0% |
! | TTGCAAGTCACGCTTTCTTT+TGG | + | chr3_3:83172693-83172712 | Msa0478440:intron | 40.0% |
! | TGCAAGTCACGCTTTCTTTT+GGG | + | chr3_3:83172694-83172713 | Msa0478440:intron | 40.0% |
GCAGATATGGATACTTCTTC+AGG | + | chr3_3:83172735-83172754 | Msa0478440:intron | 40.0% | |
! | AGAGTTTTACAACGGTGCAA+CGG | - | chr3_3:83172777-83172796 | None:intergenic | 40.0% |
! | CCAGGTGAAGAGTTTTACAA+CGG | - | chr3_3:83172785-83172804 | None:intergenic | 40.0% |
! | AAAACTCTTCACCTGGTTTG+TGG | + | chr3_3:83172789-83172808 | Msa0478440:intron | 40.0% |
AGCTAAAATTGCCACAAACC+AGG | - | chr3_3:83172803-83172822 | None:intergenic | 40.0% | |
GTCTAACCTGCATACAAGTT+TGG | - | chr3_3:83172890-83172909 | None:intergenic | 40.0% | |
CTTCAACATTGTGAAACCCT+TGG | - | chr3_3:83172917-83172936 | None:intergenic | 40.0% | |
CAAGGGTTTCACAATGTTGA+AGG | + | chr3_3:83172915-83172934 | Msa0478440:CDS | 40.0% | |
CATACGATAAGTACGCATCA+GGG | - | chr3_3:83172950-83172969 | None:intergenic | 40.0% | |
TCATACGATAAGTACGCATC+AGG | - | chr3_3:83172951-83172970 | None:intergenic | 40.0% | |
TTATTGTTTCCCCCTTGTTG+AGG | + | chr3_3:83173307-83173326 | Msa0478440:CDS | 40.0% | |
GAAGTTGTGTTTGCATGACT+TGG | - | chr3_3:83173484-83173503 | None:intergenic | 40.0% | |
TCTGTTATAAAAGAGAGGGG+AGG | + | chr3_3:83173556-83173575 | Msa0478440:intron | 40.0% | |
CTGTTATAAAAGAGAGGGGA+GGG | + | chr3_3:83173557-83173576 | Msa0478440:intron | 40.0% | |
TGTTATAAAAGAGAGGGGAG+GGG | + | chr3_3:83173558-83173577 | Msa0478440:intron | 40.0% | |
AGGAGAGTTTCTCTCTAGTT+AGG | + | chr3_3:83173619-83173638 | Msa0478440:intron | 40.0% | |
CAATGGTGGCAAAACAGAAA+AGG | - | chr3_3:83173689-83173708 | None:intergenic | 40.0% | |
GCTTAAGATCTCTACAATGG+TGG | - | chr3_3:83173703-83173722 | None:intergenic | 40.0% | |
CGAGCTTAAGATCTCTACAA+TGG | - | chr3_3:83173706-83173725 | None:intergenic | 40.0% | |
! | TATGTCTCGTGTTACTCTTC+GGG | + | chr3_3:83174027-83174046 | Msa0478440:intron | 40.0% |
ATTCTCATTCATCAGAGGAG+GGG | - | chr3_3:83174403-83174422 | None:intergenic | 40.0% | |
CATTCTCATTCATCAGAGGA+GGG | - | chr3_3:83174404-83174423 | None:intergenic | 40.0% | |
ACATTCTCATTCATCAGAGG+AGG | - | chr3_3:83174405-83174424 | None:intergenic | 40.0% | |
TCCTCTGATGAATGAGAATG+TGG | + | chr3_3:83174404-83174423 | Msa0478440:CDS | 40.0% | |
TCCACATTCTCATTCATCAG+AGG | - | chr3_3:83174408-83174427 | None:intergenic | 40.0% | |
CAAAGCTCTACTGCTACAAA+TGG | - | chr3_3:83174471-83174490 | None:intergenic | 40.0% | |
! | TTGCTTTGCAGTTTGGAATC+TGG | + | chr3_3:83174526-83174545 | Msa0478440:intron | 40.0% |
! | TGCTTTGCAGTTTGGAATCT+GGG | + | chr3_3:83174527-83174546 | Msa0478440:intron | 40.0% |
CACTTACTGTGTTTGTTTCC+TGG | + | chr3_3:83174745-83174764 | Msa0478440:intron | 40.0% | |
!! | GAAGGCTGTTGATTCATTGT+AGG | + | chr3_3:83174877-83174896 | Msa0478440:intron | 40.0% |
!! | TATGGTGTTGCGTATTTCAG+GGG | + | chr3_3:83175225-83175244 | Msa0478440:intron | 40.0% |
CATCCTTGTGATAAGAGAAG+AGG | + | chr3_3:83175251-83175270 | Msa0478440:CDS | 40.0% | |
ATGCCTCTTCTCTTATCACA+AGG | - | chr3_3:83175257-83175276 | None:intergenic | 40.0% | |
!! | TCCGGCAATTGATTTTTCAC+TGG | + | chr3_3:83175298-83175317 | Msa0478440:CDS | 40.0% |
TTCCAAAAATTTCAGTCCCC+TGG | - | chr3_3:83175526-83175545 | None:intergenic | 40.0% | |
!! | GGGGACTGAAATTTTTGGAA+TGG | + | chr3_3:83175526-83175545 | Msa0478440:CDS | 40.0% |
!! | TTTAGGATGGCCTTTTCCTT+AGG | + | chr3_3:83175682-83175701 | Msa0478440:intron | 40.0% |
! | TTAGGATGGCCTTTTCCTTA+GGG | + | chr3_3:83175683-83175702 | Msa0478440:intron | 40.0% |
! | TCCTAAGGACATTGGTTAAG+AGG | + | chr3_3:83175725-83175744 | Msa0478440:intron | 40.0% |
ACCTCTTAACCAATGTCCTT+AGG | - | chr3_3:83175729-83175748 | None:intergenic | 40.0% | |
ACGTTAATAAGTGCCCTAAG+GGG | - | chr3_3:83175865-83175884 | None:intergenic | 40.0% | |
CAACGTTAATAAGTGCCCTA+AGG | - | chr3_3:83175867-83175886 | None:intergenic | 40.0% | |
CCAAACCTTATCCCATTAAG+TGG | - | chr3_3:83176017-83176036 | None:intergenic | 40.0% | |
CCACTTAATGGGATAAGGTT+TGG | + | chr3_3:83176014-83176033 | Msa0478440:intron | 40.0% | |
! | TCATATCTCTGTATTGGTCC+AGG | + | chr3_3:83176152-83176171 | Msa0478440:intron | 40.0% |
GTTATGGACACGCAAAGAAA+AGG | + | chr3_3:83176174-83176193 | Msa0478440:CDS | 40.0% | |
!! | TTCCGAAAGCACTTAGAGTA+TGG | - | chr3_3:83176234-83176253 | None:intergenic | 40.0% |
GTTCAGTGGTCATCATTGAT+AGG | + | chr3_3:83176643-83176662 | Msa0478440:CDS | 40.0% | |
TCAGTGGTCATCATTGATAG+GGG | + | chr3_3:83176645-83176664 | Msa0478440:CDS | 40.0% | |
! | TGGAATTTTGCCAGGAAAGT+TGG | - | chr3_3:83176784-83176803 | None:intergenic | 40.0% |
TTTCCTGGCAAAATTCCACA+GGG | + | chr3_3:83176786-83176805 | Msa0478440:CDS | 40.0% | |
TTGCTGACGAGAAACTTTCT+GGG | + | chr3_3:83176829-83176848 | Msa0478440:CDS | 40.0% | |
!! | CTTCTTTCTAGGGTGAAAGA+AGG | - | chr3_3:83177073-83177092 | None:intergenic | 40.0% |
CTTCTTTCACCCTAGAAAGA+AGG | + | chr3_3:83177071-83177090 | Msa0478440:three_prime_UTR | 40.0% | |
!! | AGTATTGGTGGTAGCCAAAA+AGG | + | chr3_3:83177112-83177131 | Msa0478440:three_prime_UTR | 40.0% |
!! | TGGTGCTGTTATAGTTGGCA+TGG | - | chr3_3:83171903-83171922 | None:intergenic | 45.0% |
!! | TGTGGTGGTGCTGTTATAGT+TGG | - | chr3_3:83171908-83171927 | None:intergenic | 45.0% |
TGTGATGAAATGAGTGTGGG+GGG | - | chr3_3:83171974-83171993 | None:intergenic | 45.0% | |
GAAGATACGCGAAGTGAATG+TGG | - | chr3_3:83172028-83172047 | None:intergenic | 45.0% | |
! | GCAAAGAAAGAGCGTGGAAA+AGG | - | chr3_3:83172092-83172111 | None:intergenic | 45.0% |
TTGGAAGCAAAGAAAGAGCG+TGG | - | chr3_3:83172098-83172117 | None:intergenic | 45.0% | |
TGTGTCCCTCATTGTGAGAT+AGG | + | chr3_3:83172479-83172498 | Msa0478440:intron | 45.0% | |
GTGTCCCTCATTGTGAGATA+GGG | + | chr3_3:83172480-83172499 | Msa0478440:intron | 45.0% | |
! | GAGTTTTACAACGGTGCAAC+GGG | - | chr3_3:83172776-83172795 | None:intergenic | 45.0% |
CCGTTGTAAAACTCTTCACC+TGG | + | chr3_3:83172782-83172801 | Msa0478440:CDS | 45.0% | |
CTTCATTCCCGCAATATTCC+AGG | + | chr3_3:83173185-83173204 | Msa0478440:intron | 45.0% | |
! | AGAGAGCATGTTAAGGCAAG+CGG | + | chr3_3:83173261-83173280 | Msa0478440:CDS | 45.0% |
! | TGTTTGCATGACTTGGGTCT+TGG | - | chr3_3:83173477-83173496 | None:intergenic | 45.0% |
TTAGTACCCTGCCCGAATTT+AGG | + | chr3_3:83173527-83173546 | Msa0478440:intron | 45.0% | |
TAGTACCCTGCCCGAATTTA+GGG | + | chr3_3:83173528-83173547 | Msa0478440:intron | 45.0% | |
AAATCCCCTAAATTCGGGCA+GGG | - | chr3_3:83173536-83173555 | None:intergenic | 45.0% | |
AAAATCCCCTAAATTCGGGC+AGG | - | chr3_3:83173537-83173556 | None:intergenic | 45.0% | |
AAGTCGTGCTTGCATGACTT+GGG | + | chr3_3:83173791-83173810 | Msa0478440:intron | 45.0% | |
ATTTGAATAGACCCCACCAC+CGG | - | chr3_3:83174301-83174320 | None:intergenic | 45.0% | |
CAAACAGCAGTTGGAGTCTT+TGG | + | chr3_3:83174348-83174367 | Msa0478440:CDS | 45.0% | |
AGCTCTACTGCTACAAATGG+TGG | - | chr3_3:83174468-83174487 | None:intergenic | 45.0% | |
ATAATCTTACAGCAGCTCCC+AGG | - | chr3_3:83174766-83174785 | None:intergenic | 45.0% | |
TGAGGACATGAAGTGTGTGT+TGG | + | chr3_3:83174901-83174920 | Msa0478440:intron | 45.0% | |
GAGGACATGAAGTGTGTGTT+GGG | + | chr3_3:83174902-83174921 | Msa0478440:intron | 45.0% | |
!! | ATGGTGTTGCGTATTTCAGG+GGG | + | chr3_3:83175226-83175245 | Msa0478440:intron | 45.0% |
TGTTTAGATAGAGCGCGATG+AGG | + | chr3_3:83175452-83175471 | Msa0478440:intron | 45.0% | |
AGAATGAAGAAGTTGCTGCC+AGG | + | chr3_3:83175505-83175524 | Msa0478440:CDS | 45.0% | |
GAATGAAGAAGTTGCTGCCA+GGG | + | chr3_3:83175506-83175525 | Msa0478440:CDS | 45.0% | |
AATGAAGAAGTTGCTGCCAG+GGG | + | chr3_3:83175507-83175526 | Msa0478440:CDS | 45.0% | |
! | TGCCAGGGGACTGAAATTTT+TGG | + | chr3_3:83175521-83175540 | Msa0478440:CDS | 45.0% |
TGCCCTAAGGGGATTGTTTA+AGG | - | chr3_3:83175854-83175873 | None:intergenic | 45.0% | |
! | CTCTGTATTGGTCCAGGTTA+TGG | + | chr3_3:83176158-83176177 | Msa0478440:intron | 45.0% |
TTCTTTGCGTGTCCATAACC+TGG | - | chr3_3:83176173-83176192 | None:intergenic | 45.0% | |
! | ATTGCTGTTGTTAGCCACAG+TGG | + | chr3_3:83176199-83176218 | Msa0478440:CDS | 45.0% |
TAATTGTGAGCTGCGTTCAG+TGG | + | chr3_3:83176629-83176648 | Msa0478440:CDS | 45.0% | |
CAGTGGTCATCATTGATAGG+GGG | + | chr3_3:83176646-83176665 | Msa0478440:CDS | 45.0% | |
!! | TTTGCCAGGAAAGTTGGTAG+AGG | - | chr3_3:83176778-83176797 | None:intergenic | 45.0% |
CTTTCCTGGCAAAATTCCAC+AGG | + | chr3_3:83176785-83176804 | Msa0478440:CDS | 45.0% | |
TTCTCGTCAGCAACATCACT+GGG | - | chr3_3:83176822-83176841 | None:intergenic | 45.0% | |
TTTCTCGTCAGCAACATCAC+TGG | - | chr3_3:83176823-83176842 | None:intergenic | 45.0% | |
GTTGCTGACGAGAAACTTTC+TGG | + | chr3_3:83176828-83176847 | Msa0478440:CDS | 45.0% | |
! | ACGAGAAACTTTCTGGGAGT+GGG | + | chr3_3:83176835-83176854 | Msa0478440:CDS | 45.0% |
GAGAAAGCGGGAAGAGAATA+AGG | - | chr3_3:83177027-83177046 | None:intergenic | 45.0% | |
CAAAATCGGAGCCATGGTAA+AGG | + | chr3_3:83177139-83177158 | Msa0478440:three_prime_UTR | 45.0% | |
!! | ATATATATATATATATATAC+TGG | + | chr3_3:83172656-83172675 | Msa0478440:intron | 5.0% |
GTGATGAAATGAGTGTGGGG+GGG | - | chr3_3:83171973-83171992 | None:intergenic | 50.0% | |
TGGAGAACGTTGAGATACGC+GGG | - | chr3_3:83172008-83172027 | None:intergenic | 50.0% | |
GTGGAGAACGTTGAGATACG+CGG | - | chr3_3:83172009-83172028 | None:intergenic | 50.0% | |
TACAACGGTGCAACGGGTAA+AGG | - | chr3_3:83172770-83172789 | None:intergenic | 50.0% | |
ATGCAGGTTAGACATGCCCA+AGG | + | chr3_3:83172897-83172916 | Msa0478440:intron | 50.0% | |
TGCAGGTTAGACATGCCCAA+GGG | + | chr3_3:83172898-83172917 | Msa0478440:intron | 50.0% | |
AGTACCCTGCCCGAATTTAG+GGG | + | chr3_3:83173529-83173548 | Msa0478440:intron | 50.0% | |
GAAGTCGTGCTTGCATGACT+TGG | + | chr3_3:83173790-83173809 | Msa0478440:intron | 50.0% | |
! | TGCTTGCATGACTTGGGTCT+TGG | + | chr3_3:83173797-83173816 | Msa0478440:intron | 50.0% |
AGGACCATGCAAACAGCAGT+TGG | + | chr3_3:83174339-83174358 | Msa0478440:intron | 50.0% | |
! | GACTCCAACTGCTGTTTGCA+TGG | - | chr3_3:83174346-83174365 | None:intergenic | 50.0% |
ACAGCAGTTGGAGTCTTTGG+TGG | + | chr3_3:83174351-83174370 | Msa0478440:CDS | 50.0% | |
!! | AGTTGGAGTCTTTGGTGGTG+AGG | + | chr3_3:83174356-83174375 | Msa0478440:CDS | 50.0% |
CACCACATACCAAATGCTCG+CGG | - | chr3_3:83174494-83174513 | None:intergenic | 50.0% | |
! | TTGCAGTTTGGAATCTGGGC+TGG | + | chr3_3:83174531-83174550 | Msa0478440:intron | 50.0% |
! | AGCGCGATGAGGACATTTTG+TGG | + | chr3_3:83175463-83175482 | Msa0478440:CDS | 50.0% |
GAGTCCTCTACCAACTTTCC+TGG | + | chr3_3:83176771-83176790 | Msa0478440:CDS | 50.0% | |
CAACATCACTGGGAAGGTCA+AGG | - | chr3_3:83176812-83176831 | None:intergenic | 50.0% | |
! | GACGAGAAACTTTCTGGGAG+TGG | + | chr3_3:83176834-83176853 | Msa0478440:CDS | 50.0% |
GGCAATCAAAATCGGAGCCA+TGG | + | chr3_3:83177133-83177152 | Msa0478440:three_prime_UTR | 50.0% | |
GAGTGTGGGGGGGATAAAAC+TGG | - | chr3_3:83171963-83171982 | None:intergenic | 55.0% | |
AACGTTGAGATACGCGGGGA+TGG | - | chr3_3:83172003-83172022 | None:intergenic | 55.0% | |
GGAGAACGTTGAGATACGCG+GGG | - | chr3_3:83172007-83172026 | None:intergenic | 55.0% | |
CTTCGCGTATCTTCTCGCTC+AGG | + | chr3_3:83172034-83172053 | Msa0478440:CDS | 55.0% | |
GATGCAAGTCTCACCCCTCT+CGG | + | chr3_3:83172978-83172997 | Msa0478440:CDS | 55.0% | |
TTACCTGCTTCCAGCCGAGA+GGG | - | chr3_3:83172995-83173014 | None:intergenic | 55.0% | |
ATTACCTGCTTCCAGCCGAG+AGG | - | chr3_3:83172996-83173015 | None:intergenic | 55.0% | |
AGAGCTTTGCCGCGAGCATT+TGG | + | chr3_3:83174482-83174501 | Msa0478440:CDS | 55.0% | |
TGCCGCGAGCATTTGGTATG+TGG | + | chr3_3:83174489-83174508 | Msa0478440:intron | 55.0% | |
! | AGGCCCTGTGGAATTTTGCC+AGG | - | chr3_3:83176792-83176811 | None:intergenic | 55.0% |
CGTCAGCAACATCACTGGGA+AGG | - | chr3_3:83176818-83176837 | None:intergenic | 55.0% | |
!! | AGGGTGAAAGAAGGTGCCAG+AGG | - | chr3_3:83177064-83177083 | None:intergenic | 55.0% |
TACCTGCTTCCAGCCGAGAG+GGG | - | chr3_3:83172994-83173013 | None:intergenic | 60.0% | |
GGTGGTGAGGCACACACTGA+TGG | + | chr3_3:83174369-83174388 | Msa0478440:CDS | 60.0% | |
TGAGATACGCGGGGATGGCG+AGG | - | chr3_3:83171998-83172017 | None:intergenic | 65.0% | |
CAAGTCTCACCCCTCTCGGC+TGG | + | chr3_3:83172982-83173001 | Msa0478440:CDS | 65.0% | |
CTGGGAAGGTCAAGGCCCTG+TGG | - | chr3_3:83176804-83176823 | None:intergenic | 65.0% | |
CACCCCTCTCGGCTGGAAGC+AGG | + | chr3_3:83172989-83173008 | Msa0478440:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 83171814 | 83177223 | 83171814 | ID=Msa0478440;Name=Msa0478440 |
chr3_3 | mRNA | 83171814 | 83177223 | 83171814 | ID=Msa0478440-mRNA-1;Parent=Msa0478440;Name=Msa0478440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=88|1|1|1|1|1|10|354|337 |
chr3_3 | exon | 83171814 | 83172055 | 83171814 | ID=Msa0478440-mRNA-1:exon:23264;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83172739 | 83172803 | 83172739 | ID=Msa0478440-mRNA-1:exon:23265;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83172903 | 83173010 | 83172903 | ID=Msa0478440-mRNA-1:exon:23266;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83173249 | 83173328 | 83173249 | ID=Msa0478440-mRNA-1:exon:23267;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83174341 | 83174503 | 83174341 | ID=Msa0478440-mRNA-1:exon:23268;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83175245 | 83175319 | 83175245 | ID=Msa0478440-mRNA-1:exon:23269;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83175459 | 83175547 | 83175459 | ID=Msa0478440-mRNA-1:exon:23270;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83176174 | 83176293 | 83176174 | ID=Msa0478440-mRNA-1:exon:23271;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83176623 | 83176667 | 83176623 | ID=Msa0478440-mRNA-1:exon:23272;Parent=Msa0478440-mRNA-1 |
chr3_3 | exon | 83176755 | 83177223 | 83176755 | ID=Msa0478440-mRNA-1:exon:23273;Parent=Msa0478440-mRNA-1 |
chr3_3 | five_prime_UTR | 83171814 | 83171901 | 83171814 | ID=Msa0478440-mRNA-1:five_prime_utr;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83171902 | 83172055 | 83171902 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83172739 | 83172803 | 83172739 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83172903 | 83173010 | 83172903 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83173249 | 83173328 | 83173249 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83174341 | 83174503 | 83174341 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83175245 | 83175319 | 83175245 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83175459 | 83175547 | 83175459 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83176174 | 83176293 | 83176174 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83176623 | 83176667 | 83176623 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | CDS | 83176755 | 83176869 | 83176755 | ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1 |
chr3_3 | three_prime_UTR | 83176870 | 83177223 | 83176870 | ID=Msa0478440-mRNA-1:three_prime_utr;Parent=Msa0478440-mRNA-1 |
Gene Sequence |
Protein sequence |