AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478440 MtrunA17_Chr3g0141101 90.202 347 12 4 1 337 1 335 0.0 617
Msa0478440 MtrunA17_Chr5g0428091 75.812 277 65 2 51 327 37 311 1.33e-156 441
Msa0478440 MtrunA17_Chr4g0049431 69.258 283 85 2 53 334 1 282 3.82e-146 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478440 AT5G64460.4 70.956 272 78 1 53 324 1 271 2.29e-146 414
Msa0478440 AT5G64460.6 70.956 272 78 1 53 324 1 271 2.29e-146 414
Msa0478440 AT5G64460.10 70.956 272 78 1 53 324 1 271 2.29e-146 414
Msa0478440 AT5G64460.2 70.956 272 78 1 53 324 1 271 2.29e-146 414
Msa0478440 AT5G64460.1 70.956 272 78 1 53 324 1 271 2.29e-146 414
Msa0478440 AT5G64460.8 70.956 272 78 1 53 324 1 271 2.29e-146 414
Msa0478440 AT5G64460.3 70.956 272 78 1 53 324 1 271 2.29e-146 414
Msa0478440 AT1G58280.1 64.026 303 105 2 27 329 20 318 1.32e-139 398
Msa0478440 AT1G58280.3 62.460 309 98 2 21 329 13 303 2.68e-139 397
Msa0478440 AT1G58280.4 66.906 278 91 1 52 329 26 302 5.68e-139 396
Msa0478440 AT1G58280.2 59.146 328 105 3 27 329 20 343 2.37e-133 384
Msa0478440 AT2G17280.1 66.920 263 86 1 62 323 8 270 3.04e-133 380
Msa0478440 AT2G17280.2 66.920 263 86 1 62 323 8 270 3.04e-133 380
Msa0478440 AT5G64460.11 71.552 232 66 0 93 324 1 232 1.71e-124 357
Msa0478440 AT5G64460.7 71.552 232 66 0 93 324 1 232 1.71e-124 357
Msa0478440 AT5G64460.9 71.552 232 66 0 93 324 1 232 1.71e-124 357
Msa0478440 AT5G64460.5 71.053 190 55 0 135 324 1 190 6.94e-101 296
Msa0478440 AT1G09935.1 52.632 247 97 1 61 307 5 231 1.33e-89 268
Msa0478440 AT1G09935.2 52.479 242 95 1 61 302 5 226 2.88e-88 265
Msa0478440 AT1G09932.3 44.939 247 122 1 53 299 1 233 3.62e-67 211
Msa0478440 AT1G09932.1 45.082 244 120 1 53 296 1 230 1.08e-66 211
Msa0478440 AT1G09932.2 45.740 223 107 1 74 296 15 223 1.06e-62 200
Msa0478440 AT1G09932.4 40.164 244 107 2 53 296 1 205 1.05e-49 166

Find 107 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCTGACGAGAAACTTTC+TGG 0.194341 3_3:+83176828 Msa0478440:CDS
CAATTGCCGGAAACATATTT+TGG 0.207388 3_3:-83175286 None:intergenic
GCCATTGATGAATGTTAAAT+TGG 0.230649 3_3:-83176958 None:intergenic
TATTTACTTCCCTTCTTTCT+AGG 0.234668 3_3:-83177081 None:intergenic
CATCATGTTTGTTACTTTGA+TGG 0.261267 3_3:-83176858 None:intergenic
CAAACAGCAGTTGGAGTCTT+TGG 0.272032 3_3:+83174348 Msa0478440:CDS
TCATTCTTCTCTCTAATATC+AGG 0.303717 3_3:-83175489 None:intergenic
TTCCGAAAGCACTTAGAGTA+TGG 0.304941 3_3:-83176231 None:intergenic
AGTATTGGTGGTAGCCAAAA+AGG 0.304949 3_3:+83177112 Msa0478440:three_prime_UTR
AATTATATGCTGATTTGATT+TGG 0.310510 3_3:-83171831 None:intergenic
GAGAAAGCGGGAAGAGAATA+AGG 0.311297 3_3:-83177024 None:intergenic
CTTTACTAAAACCATATAAC+TGG 0.314598 3_3:-83176890 None:intergenic
TTCCATACTCTAAGTGCTTT+CGG 0.324037 3_3:+83176229 Msa0478440:CDS
TGAGTACCAAAATATGTTTC+CGG 0.340527 3_3:+83175280 Msa0478440:CDS
GCAGATATGGATACTTCTTC+AGG 0.355326 3_3:+83172735 Msa0478440:intron
GTTCTTGTTTAATAAAATAG+TGG 0.400783 3_3:-83171930 None:intergenic
AGAGCTTTGCCGCGAGCATT+TGG 0.411847 3_3:+83174482 Msa0478440:CDS
TCATACGATAAGTACGCATC+AGG 0.429296 3_3:-83172948 None:intergenic
TTCAGTGGTCATCATTGATA+GGG 0.433878 3_3:+83176644 Msa0478440:CDS
GTTCAGTGGTCATCATTGAT+AGG 0.440836 3_3:+83176643 Msa0478440:CDS
CTTCAACATTGTGAAACCCT+TGG 0.441453 3_3:-83172914 None:intergenic
CAAGTCTCACCCCTCTCGGC+TGG 0.443047 3_3:+83172982 Msa0478440:CDS
GAGTCCTCTACCAACTTTCC+TGG 0.444606 3_3:+83176771 Msa0478440:CDS
ATTTACTTCCCTTCTTTCTA+GGG 0.445222 3_3:-83177080 None:intergenic
TCCAATTTAACATTCATCAA+TGG 0.461919 3_3:+83176957 Msa0478440:three_prime_UTR
TACAACGGTGCAACGGGTAA+AGG 0.462790 3_3:-83172767 None:intergenic
TTCAACATTGTGAAACCCTT+GGG 0.465042 3_3:-83172913 None:intergenic
CTTCTTTCACCCTAGAAAGA+AGG 0.465149 3_3:+83177071 Msa0478440:three_prime_UTR
AGAATGAAGAAGTTGCTGCC+AGG 0.468158 3_3:+83175505 Msa0478440:CDS
CACCCCTCTCGGCTGGAAGC+AGG 0.471269 3_3:+83172989 Msa0478440:CDS
CTTTCCTGGCAAAATTCCAC+AGG 0.484324 3_3:+83176785 Msa0478440:CDS
CAAGGGTTTCACAATGTTGA+AGG 0.484805 3_3:+83172915 Msa0478440:CDS
GATGCAAGTCTCACCCCTCT+CGG 0.486259 3_3:+83172978 Msa0478440:CDS
TAGAGTAATGCTTACTAGTA+CGG 0.487552 3_3:+83177187 Msa0478440:three_prime_UTR
TTGCTGACGAGAAACTTTCT+GGG 0.489770 3_3:+83176829 Msa0478440:CDS
TTTCTCGTCAGCAACATCAC+TGG 0.499214 3_3:-83176820 None:intergenic
GACTCCAACTGCTGTTTGCA+TGG 0.504794 3_3:-83174343 None:intergenic
GTAAATATCTGTGAAAGTAT+TGG 0.508955 3_3:+83177097 Msa0478440:three_prime_UTR
TAAAATGTATCATGAGAAAG+CGG 0.514134 3_3:-83177037 None:intergenic
GACGAGAAACTTTCTGGGAG+TGG 0.517322 3_3:+83176834 Msa0478440:CDS
GAAGATACGCGAAGTGAATG+TGG 0.521298 3_3:-83172025 None:intergenic
CTTCTTTCTAGGGTGAAAGA+AGG 0.522353 3_3:-83177070 None:intergenic
GTTATGGACACGCAAAGAAA+AGG 0.523784 3_3:+83176174 Msa0478440:CDS
CCGTTGTAAAACTCTTCACC+TGG 0.524813 3_3:+83172782 Msa0478440:CDS
GAATGAAGAAGTTGCTGCCA+GGG 0.525220 3_3:+83175506 Msa0478440:CDS
CAAAGCTCTACTGCTACAAA+TGG 0.525638 3_3:-83174468 None:intergenic
AACGTTGAGATACGCGGGGA+TGG 0.527877 3_3:-83172000 None:intergenic
TGTGGTGGTGCTGTTATAGT+TGG 0.528369 3_3:-83171905 None:intergenic
TTCTCGTCAGCAACATCACT+GGG 0.530667 3_3:-83176819 None:intergenic
TTCTTTCACCCTAGAAAGAA+GGG 0.535795 3_3:+83177072 Msa0478440:three_prime_UTR
TAATCTGAGAGAGCATGTTA+AGG 0.541064 3_3:+83173254 Msa0478440:CDS
CAAAATCGGAGCCATGGTAA+AGG 0.543335 3_3:+83177139 Msa0478440:three_prime_UTR
AATATCTGTGAAAGTATTGG+TGG 0.546036 3_3:+83177100 Msa0478440:three_prime_UTR
GGTTGTGATGAAATGAGTGT+GGG 0.547053 3_3:-83171974 None:intergenic
AGGTTGTGATGAAATGAGTG+TGG 0.547493 3_3:-83171975 None:intergenic
ACAGCAGTTGGAGTCTTTGG+TGG 0.550104 3_3:+83174351 Msa0478440:CDS
AGTTGGAGTCTTTGGTGGTG+AGG 0.551014 3_3:+83174356 Msa0478440:CDS
GGCAATCAAAATCGGAGCCA+TGG 0.552136 3_3:+83177133 Msa0478440:three_prime_UTR
ACGAGAAACTTTCTGGGAGT+GGG 0.556422 3_3:+83176835 Msa0478440:CDS
TGGTGCTGTTATAGTTGGCA+TGG 0.557569 3_3:-83171900 None:intergenic
CTTCGCGTATCTTCTCGCTC+AGG 0.567075 3_3:+83172034 Msa0478440:CDS
TTACCTGCTTCCAGCCGAGA+GGG 0.567288 3_3:-83172992 None:intergenic
TTTGCCAGGAAAGTTGGTAG+AGG 0.574696 3_3:-83176775 None:intergenic
TGGAGAACGTTGAGATACGC+GGG 0.576761 3_3:-83172005 None:intergenic
TTTAATAAAATAGTGGAATG+TGG 0.579461 3_3:-83171923 None:intergenic
GTGGAGAACGTTGAGATACG+CGG 0.579514 3_3:-83172006 None:intergenic
ACATTCTCATTCATCAGAGG+AGG 0.587925 3_3:-83174402 None:intergenic
TCCTCTGATGAATGAGAATG+TGG 0.595062 3_3:+83174404 Msa0478440:CDS
ATTGCTGTTGTTAGCCACAG+TGG 0.597876 3_3:+83176199 Msa0478440:CDS
GGTGGTGAGGCACACACTGA+TGG 0.600230 3_3:+83174369 Msa0478440:CDS
CATTCTCATTCATCAGAGGA+GGG 0.600745 3_3:-83174401 None:intergenic
TGAGATACGCGGGGATGGCG+AGG 0.600976 3_3:-83171995 None:intergenic
ATAAAGTTATACCTCAACAA+GGG 0.601532 3_3:-83173318 None:intergenic
TCCACATTCTCATTCATCAG+AGG 0.604283 3_3:-83174405 None:intergenic
AGGACCATGCAAACAGCAGT+TGG 0.604452 3_3:+83174339 Msa0478440:intron
TAAAGTTATACCTCAACAAG+GGG 0.604692 3_3:-83173317 None:intergenic
CAACATCACTGGGAAGGTCA+AGG 0.605658 3_3:-83176809 None:intergenic
AAAATGTATCATGAGAAAGC+GGG 0.606668 3_3:-83177036 None:intergenic
CATCCTTGTGATAAGAGAAG+AGG 0.612650 3_3:+83175251 Msa0478440:CDS
TCAGTGGTCATCATTGATAG+GGG 0.614829 3_3:+83176645 Msa0478440:CDS
AGAGAGCATGTTAAGGCAAG+CGG 0.615902 3_3:+83173261 Msa0478440:CDS
ATTCTCATTCATCAGAGGAG+GGG 0.621059 3_3:-83174400 None:intergenic
CGTCAGCAACATCACTGGGA+AGG 0.624278 3_3:-83176815 None:intergenic
AGCTCTACTGCTACAAATGG+TGG 0.625499 3_3:-83174465 None:intergenic
TTGTGATGAAATGAGTGTGG+GGG 0.627609 3_3:-83171972 None:intergenic
TGTGATGAAATGAGTGTGGG+GGG 0.629004 3_3:-83171971 None:intergenic
ATGCAGGTTAGACATGCCCA+AGG 0.629064 3_3:+83172897 Msa0478440:intron
AATAAAGTTATACCTCAACA+AGG 0.644424 3_3:-83173319 None:intergenic
TACCTGCTTCCAGCCGAGAG+GGG 0.644968 3_3:-83172991 None:intergenic
CTGGGAAGGTCAAGGCCCTG+TGG 0.647778 3_3:-83176801 None:intergenic
TGCAGGTTAGACATGCCCAA+GGG 0.651450 3_3:+83172898 Msa0478440:intron
ATGCCTCTTCTCTTATCACA+AGG 0.652179 3_3:-83175254 None:intergenic
TAATTGTGAGCTGCGTTCAG+TGG 0.658742 3_3:+83176629 Msa0478440:CDS
CATACGATAAGTACGCATCA+GGG 0.659486 3_3:-83172947 None:intergenic
AATGAAGAAGTTGCTGCCAG+GGG 0.664314 3_3:+83175507 Msa0478440:CDS
TTTCCTGGCAAAATTCCACA+GGG 0.673235 3_3:+83176786 Msa0478440:CDS
GTTGTGATGAAATGAGTGTG+GGG 0.677612 3_3:-83171973 None:intergenic
CAGTGGTCATCATTGATAGG+GGG 0.678974 3_3:+83176646 Msa0478440:CDS
ATTACCTGCTTCCAGCCGAG+AGG 0.685732 3_3:-83172993 None:intergenic
GTGATGAAATGAGTGTGGGG+GGG 0.694618 3_3:-83171970 None:intergenic
AATAAAATAGTGGAATGTGG+TGG 0.696828 3_3:-83171920 None:intergenic
CACCACATACCAAATGCTCG+CGG 0.697669 3_3:-83174491 None:intergenic
AGGGTGAAAGAAGGTGCCAG+AGG 0.702493 3_3:-83177061 None:intergenic
TGTTTAGATAGAGCGCGATG+AGG 0.707425 3_3:+83175452 Msa0478440:intron
AAAGTTATACCTCAACAAGG+GGG 0.748645 3_3:-83173316 None:intergenic
GGAGAACGTTGAGATACGCG+GGG 0.751908 3_3:-83172004 None:intergenic
TATGGAATAGAAAACCACTG+TGG 0.804378 3_3:-83176213 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATTTTATAAAAAGTAAT+TGG + chr3_3:83175169-83175188 Msa0478440:intron 10.0%
!! TTTGCATTTAATTATTTCAA+TGG - chr3_3:83172342-83172361 None:intergenic 15.0%
!! ACTAATATAACATTCAAAAT+TGG + chr3_3:83172433-83172452 Msa0478440:intron 15.0%
!!! AATAACTAGTTCAATTTTTT+TGG - chr3_3:83173292-83173311 None:intergenic 15.0%
!! AGTAAATTAGTAACAAAATT+AGG - chr3_3:83173360-83173379 None:intergenic 15.0%
!! TAAAATAAAGCAAAGTAAAT+TGG - chr3_3:83174820-83174839 None:intergenic 15.0%
!!! TTTTATAAAATAAGCAAGAA+AGG - chr3_3:83175163-83175182 None:intergenic 15.0%
!! GAAAAAAAATCACATTATTA+TGG + chr3_3:83175653-83175672 Msa0478440:intron 15.0%
!! ACACATAATTAATAATAAGA+CGG + chr3_3:83176363-83176382 Msa0478440:intron 15.0%
!!! AATTATATGCTGATTTGATT+TGG - chr3_3:83171834-83171853 None:intergenic 20.0%
!!! TTTAATAAAATAGTGGAATG+TGG - chr3_3:83171926-83171945 None:intergenic 20.0%
!!! GTTCTTGTTTAATAAAATAG+TGG - chr3_3:83171933-83171952 None:intergenic 20.0%
!!! TTGAAAAAATCATTTTCTTG+TGG + chr3_3:83172858-83172877 Msa0478440:intron 20.0%
!!! TATTCCAGGTTAATTTTTAA+TGG + chr3_3:83173199-83173218 Msa0478440:intron 20.0%
!! GGTATAACTTTATTGTAATT+TGG + chr3_3:83173328-83173347 Msa0478440:intron 20.0%
!!! ATTTTCTGTTATAAAAGAGA+GGG + chr3_3:83173552-83173571 Msa0478440:intron 20.0%
!!! TTGTTGTTTCATTTCATATA+TGG - chr3_3:83173892-83173911 None:intergenic 20.0%
!! TCTTAAACATAAAACTGTAT+GGG - chr3_3:83174170-83174189 None:intergenic 20.0%
!! ATCTTAAACATAAAACTGTA+TGG - chr3_3:83174171-83174190 None:intergenic 20.0%
!!! CTCTTTAAAGCATTTATAAA+GGG - chr3_3:83174599-83174618 None:intergenic 20.0%
!!! CTTTATAAATGCTTTAAAGA+GGG + chr3_3:83174598-83174617 Msa0478440:intron 20.0%
!! TCCTAATTAATTAACAAAGA+AGG - chr3_3:83174702-83174721 None:intergenic 20.0%
!!! AGTTAGTTTGAGTATTTTTA+TGG + chr3_3:83175207-83175226 Msa0478440:intron 20.0%
!!! AGTCTTATTGAAAAAGAAAT+AGG + chr3_3:83175606-83175625 Msa0478440:intron 20.0%
!!! GTCTTATTGAAAAAGAAATA+GGG + chr3_3:83175607-83175626 Msa0478440:intron 20.0%
!!! AAACAAGAGGTAAATTTTTA+TGG - chr3_3:83175831-83175850 None:intergenic 20.0%
!! TTGAAACAAATAGTTGTATT+AGG + chr3_3:83176107-83176126 Msa0478440:intron 20.0%
!!! AATAAGACGGTTTTTTTTTT+TGG + chr3_3:83176376-83176395 Msa0478440:intron 20.0%
!!! GTTTGATTTTAATTTGTTGT+TGG + chr3_3:83176470-83176489 Msa0478440:intron 20.0%
!! GTATAAGTTATTCTGTAAAT+AGG - chr3_3:83176683-83176702 None:intergenic 20.0%
!!! TTTTGTGTATTCATTTTTAC+AGG + chr3_3:83176733-83176752 Msa0478440:intron 20.0%
!! TGTTTACATGTAAAAATCAA+TGG - chr3_3:83176983-83177002 None:intergenic 20.0%
! TGATCTAATTAAGCAAAGAA+GGG - chr3_3:83172132-83172151 None:intergenic 25.0%
! TTGATCTAATTAAGCAAAGA+AGG - chr3_3:83172133-83172152 None:intergenic 25.0%
! TGTTCAAGAAGACAATATAT+GGG + chr3_3:83172542-83172561 Msa0478440:intron 25.0%
! AAAATTAACCTGGAATATTG+CGG - chr3_3:83173196-83173215 None:intergenic 25.0%
! ATAAAGTTATACCTCAACAA+GGG - chr3_3:83173321-83173340 None:intergenic 25.0%
! AATAAAGTTATACCTCAACA+AGG - chr3_3:83173322-83173341 None:intergenic 25.0%
!!! GTCAAAGATTTGTTACTTAT+TGG + chr3_3:83173390-83173409 Msa0478440:intron 25.0%
!! GATTTTCTGTTATAAAAGAG+AGG + chr3_3:83173551-83173570 Msa0478440:intron 25.0%
!! TTTTCTGTTATAAAAGAGAG+GGG + chr3_3:83173553-83173572 Msa0478440:intron 25.0%
! TTGACAAATATTGTTAGAGT+TGG + chr3_3:83173594-83173613 Msa0478440:intron 25.0%
!! AAATATTGTTAGAGTTGGTT+AGG + chr3_3:83173599-83173618 Msa0478440:intron 25.0%
! AACAACTATATATCATGGAA+TGG - chr3_3:83173737-83173756 None:intergenic 25.0%
! CAAGAAACAACTATATATCA+TGG - chr3_3:83173742-83173761 None:intergenic 25.0%
!!! ATAGTTGTTTCTTGACTTTA+CGG + chr3_3:83173748-83173767 Msa0478440:intron 25.0%
! AAGAGTCATAAACTAGATAT+TGG - chr3_3:83173986-83174005 None:intergenic 25.0%
! ATAAGCTCAATCATATTTGA+GGG - chr3_3:83174133-83174152 None:intergenic 25.0%
! TATAAGCTCAATCATATTTG+AGG - chr3_3:83174134-83174153 None:intergenic 25.0%
!!! ACAGTTTTATGTTTAAGATG+TGG + chr3_3:83174172-83174191 Msa0478440:intron 25.0%
!!! TCCTCTAGATTATTTTTTTC+CGG + chr3_3:83174279-83174298 Msa0478440:intron 25.0%
! ATTGCTAAATATTTCATTGC+AGG + chr3_3:83174319-83174338 Msa0478440:intron 25.0%
!! AATTTTATTGCTTTGCAGTT+TGG + chr3_3:83174519-83174538 Msa0478440:intron 25.0%
!! TTTAAAGCATTTATAAAGGG+AGG - chr3_3:83174596-83174615 None:intergenic 25.0%
!!! CCTCTTTAAAGCATTTATAA+AGG - chr3_3:83174600-83174619 None:intergenic 25.0%
!!! CCTTTATAAATGCTTTAAAG+AGG + chr3_3:83174597-83174616 Msa0478440:intron 25.0%
! GAAATGCTTAAATTACATGT+AGG + chr3_3:83174653-83174672 Msa0478440:intron 25.0%
! GCCTTCTTTGTTAATTAATT+AGG + chr3_3:83174698-83174717 Msa0478440:intron 25.0%
! GGATTAAGGAGTAAAATTAA+GGG - chr3_3:83174799-83174818 None:intergenic 25.0%
! TGGATTAAGGAGTAAAATTA+AGG - chr3_3:83174800-83174819 None:intergenic 25.0%
! AAGCAAAGTAAATTGGATTA+AGG - chr3_3:83174813-83174832 None:intergenic 25.0%
!!! ACCATATTTCTAGTTAATGT+GGG - chr3_3:83174940-83174959 None:intergenic 25.0%
!!! TACCATATTTCTAGTTAATG+TGG - chr3_3:83174941-83174960 None:intergenic 25.0%
!!! TTAGATTTTGGATTTGAGTT+TGG + chr3_3:83175003-83175022 Msa0478440:intron 25.0%
!!! TAGATTTTGGATTTGAGTTT+GGG + chr3_3:83175004-83175023 Msa0478440:intron 25.0%
!! ATTTTCCAGATTTTCTCAAT+CGG + chr3_3:83175047-83175066 Msa0478440:intron 25.0%
! AGTGACTAGATTATTAGATT+AGG + chr3_3:83175086-83175105 Msa0478440:intron 25.0%
! TATAAAATAAGCAAGAAAGG+AGG - chr3_3:83175160-83175179 None:intergenic 25.0%
!!! ATTGATTTTTCACTGGTAAA+TGG + chr3_3:83175305-83175324 Msa0478440:intron 25.0%
!! ATTTGTTGGTAAGTTATGAA+TGG + chr3_3:83175392-83175411 Msa0478440:intron 25.0%
! AAATCACATTATTATGGTTG+AGG + chr3_3:83175659-83175678 Msa0478440:intron 25.0%
! ATTGGTTAAGAGGTAATAAA+AGG + chr3_3:83175735-83175754 Msa0478440:intron 25.0%
! TTTACTATGTTGCTCTTATA+CGG + chr3_3:83175918-83175937 Msa0478440:intron 25.0%
! TTCTATTCATATCTCTGTAT+TGG + chr3_3:83176146-83176165 Msa0478440:intron 25.0%
! GAATTATCACATTCACATTT+CGG + chr3_3:83176332-83176351 Msa0478440:intron 25.0%
!!! AATTTGCTAATGAACACTAA+AGG + chr3_3:83176406-83176425 Msa0478440:intron 25.0%
! TTTACTCAAAGGATTTCAAT+CGG - chr3_3:83176433-83176452 None:intergenic 25.0%
! AAATCCTTTGAGTAAAAAAC+TGG + chr3_3:83176437-83176456 Msa0478440:intron 25.0%
!! TTTTCCAGTTTTTTACTCAA+AGG - chr3_3:83176444-83176463 None:intergenic 25.0%
! TTAAAAGTCCAATACAAGAA+AGG - chr3_3:83176572-83176591 None:intergenic 25.0%
! AAGTTATTCTGTAAATAGGA+TGG - chr3_3:83176679-83176698 None:intergenic 25.0%
!!! ATTCATTTTTACAGGATGAT+TGG + chr3_3:83176741-83176760 Msa0478440:intron 25.0%
! CTTTACTAAAACCATATAAC+TGG - chr3_3:83176893-83176912 None:intergenic 25.0%
! TCCAATTTAACATTCATCAA+TGG + chr3_3:83176957-83176976 Msa0478440:three_prime_UTR 25.0%
! TAAAATGTATCATGAGAAAG+CGG - chr3_3:83177040-83177059 None:intergenic 25.0%
!! GTAAATATCTGTGAAAGTAT+TGG + chr3_3:83177097-83177116 Msa0478440:three_prime_UTR 25.0%
!!! TTTTAAAACTACCTTTACCA+TGG - chr3_3:83177153-83177172 None:intergenic 25.0%
! AATAAAATAGTGGAATGTGG+TGG - chr3_3:83171923-83171942 None:intergenic 30.0%
! AAGCAAATCATCGATTAAAC+TGG - chr3_3:83172238-83172257 None:intergenic 30.0%
CTGTTCAAGAAGACAATATA+TGG + chr3_3:83172541-83172560 Msa0478440:intron 30.0%
GCAGATATAGTGATATACTA+AGG - chr3_3:83173096-83173115 None:intergenic 30.0%
AAATTAACCTGGAATATTGC+GGG - chr3_3:83173195-83173214 None:intergenic 30.0%
! TCCAGGTTAATTTTTAATGG+TGG + chr3_3:83173202-83173221 Msa0478440:intron 30.0%
TCCACCATTAAAAATTAACC+TGG - chr3_3:83173206-83173225 None:intergenic 30.0%
! TATTTGTTGCTCTATATGAC+AGG + chr3_3:83173227-83173246 Msa0478440:intron 30.0%
TAAAGTTATACCTCAACAAG+GGG - chr3_3:83173320-83173339 None:intergenic 30.0%
ATGTGTATAAGAAGTCTGAT+AGG + chr3_3:83173448-83173467 Msa0478440:intron 30.0%
AACAGAAAATCCCCTAAATT+CGG - chr3_3:83173542-83173561 None:intergenic 30.0%
!! TAGTTGTTTCTTGACTTTAC+GGG + chr3_3:83173749-83173768 Msa0478440:intron 30.0%
GATTTGTAAAGGACTTTGAT+AGG - chr3_3:83173826-83173845 None:intergenic 30.0%
ATCAAAGTCCTTTACAAATC+AGG + chr3_3:83173826-83173845 Msa0478440:intron 30.0%
! CGATTATTCCTGATTTGTAA+AGG - chr3_3:83173837-83173856 None:intergenic 30.0%
ATTGCAGAATCGAACTTAAA+TGG + chr3_3:83173866-83173885 Msa0478440:intron 30.0%
! TTTAGAGTTTCATTCATCCT+AGG - chr3_3:83173956-83173975 None:intergenic 30.0%
ATGATTGAGCTTATAAAGAG+TGG + chr3_3:83174139-83174158 Msa0478440:intron 30.0%
ACCGGAAAAAAATAATCTAG+AGG - chr3_3:83174283-83174302 None:intergenic 30.0%
!!! TCTAGATTATTTTTTTCCGG+TGG + chr3_3:83174282-83174301 Msa0478440:intron 30.0%
TAACAAAGAAGGCTTAAAGA+TGG - chr3_3:83174691-83174710 None:intergenic 30.0%
CAAACTATTGTACATGACTT+TGG - chr3_3:83174858-83174877 None:intergenic 30.0%
AGTCATGTACAATAGTTTGA+AGG + chr3_3:83174859-83174878 Msa0478440:intron 30.0%
TCCCACATTAACTAGAAATA+TGG + chr3_3:83174936-83174955 Msa0478440:intron 30.0%
AAGTAGTCCTTATATAACTC+AGG + chr3_3:83174962-83174981 Msa0478440:intron 30.0%
AGAATTGCCTGAGTTATATA+AGG - chr3_3:83174972-83174991 None:intergenic 30.0%
AATCCAAAATCTAACTCAAG+TGG - chr3_3:83174997-83175016 None:intergenic 30.0%
AGAAAATCTGGAAAATCCTT+GGG - chr3_3:83175043-83175062 None:intergenic 30.0%
TGAGTACCAAAATATGTTTC+CGG + chr3_3:83175280-83175299 Msa0478440:CDS 30.0%
! TTTTGTTCTGATGCATTTGT+TGG + chr3_3:83175378-83175397 Msa0478440:intron 30.0%
GGTAAGTTATGAATGGTATT+TGG + chr3_3:83175399-83175418 Msa0478440:intron 30.0%
TCATTCTTCTCTCTAATATC+AGG - chr3_3:83175492-83175511 None:intergenic 30.0%
CATTATTATGGTTGAGGTTT+AGG + chr3_3:83175665-83175684 Msa0478440:intron 30.0%
! CTTTTCCTTAGGGTAATTTA+GGG + chr3_3:83175693-83175712 Msa0478440:intron 30.0%
TATTACCCTAAATTACCCTA+AGG - chr3_3:83175701-83175720 None:intergenic 30.0%
CCTTTCTGACGAATAAAAAA+AGG - chr3_3:83175891-83175910 None:intergenic 30.0%
!!! CCTTTTTTTATTCGTCAGAA+AGG + chr3_3:83175888-83175907 Msa0478440:intron 30.0%
! TATACGGAGTATTTATGAGT+TGG + chr3_3:83175934-83175953 Msa0478440:intron 30.0%
! TTATGAGTTGGATAGGAATA+TGG + chr3_3:83175946-83175965 Msa0478440:intron 30.0%
! TAAGGTTTGGTTGTTATTGT+TGG + chr3_3:83176027-83176046 Msa0478440:intron 30.0%
AGACATTCAGATTATGCATA+TGG + chr3_3:83176073-83176092 Msa0478440:intron 30.0%
ATAGTTGTATTAGGCCATAA+TGG + chr3_3:83176116-83176135 Msa0478440:intron 30.0%
AATAGAACACATGACCATTA+TGG - chr3_3:83176133-83176152 None:intergenic 30.0%
!! CATCATGTTTGTTACTTTGA+TGG - chr3_3:83176861-83176880 None:intergenic 30.0%
GCCATTGATGAATGTTAAAT+TGG - chr3_3:83176961-83176980 None:intergenic 30.0%
AAAATGTATCATGAGAAAGC+GGG - chr3_3:83177039-83177058 None:intergenic 30.0%
!! TCATGATACATTTTAACCTC+TGG + chr3_3:83177045-83177064 Msa0478440:three_prime_UTR 30.0%
ATTTACTTCCCTTCTTTCTA+GGG - chr3_3:83177083-83177102 None:intergenic 30.0%
TATTTACTTCCCTTCTTTCT+AGG - chr3_3:83177084-83177103 None:intergenic 30.0%
!! AATATCTGTGAAAGTATTGG+TGG + chr3_3:83177100-83177119 Msa0478440:three_prime_UTR 30.0%
TAGAGTAATGCTTACTAGTA+CGG + chr3_3:83177187-83177206 Msa0478440:three_prime_UTR 30.0%
AAGAAGGGAGAAAACGAAAT+TGG - chr3_3:83172117-83172136 None:intergenic 35.0%
TTCTGTTATGTACTCGTCAT+TGG + chr3_3:83172194-83172213 Msa0478440:intron 35.0%
TCTGTTATGTACTCGTCATT+GGG + chr3_3:83172195-83172214 Msa0478440:intron 35.0%
! AAAAGCACACAACACAAGTT+TGG - chr3_3:83172517-83172536 None:intergenic 35.0%
CTTTCATGTCATTGCAGATA+TGG + chr3_3:83172722-83172741 Msa0478440:intron 35.0%
!!! GCAATTTTAGCTTTGTGCAT+TGG + chr3_3:83172811-83172830 Msa0478440:intron 35.0%
ACTTATCCAAACTTGTATGC+AGG + chr3_3:83172881-83172900 Msa0478440:intron 35.0%
TTCAACATTGTGAAACCCTT+GGG - chr3_3:83172916-83172935 None:intergenic 35.0%
! CTGTGAGAGTATGCATAATA+AGG - chr3_3:83173021-83173040 None:intergenic 35.0%
TTCAAACATTCTGCAGAGAT+TGG + chr3_3:83173057-83173076 Msa0478440:intron 35.0%
AAGCGTTATGCTAGAATAAG+AGG - chr3_3:83173155-83173174 None:intergenic 35.0%
! TAATCTGAGAGAGCATGTTA+AGG + chr3_3:83173254-83173273 Msa0478440:CDS 35.0%
AAAGTTATACCTCAACAAGG+GGG - chr3_3:83173319-83173338 None:intergenic 35.0%
AAGTTGTGTTTGCATGACTT+GGG - chr3_3:83173483-83173502 None:intergenic 35.0%
ACAGAAAATCCCCTAAATTC+GGG - chr3_3:83173541-83173560 None:intergenic 35.0%
CGAATATGAGTCTTTGATTC+TGG + chr3_3:83173653-83173672 Msa0478440:intron 35.0%
! AACGTTTTACCAATTGTCCT+AGG + chr3_3:83173936-83173955 Msa0478440:intron 35.0%
TTCATTCATCCTAGGACAAT+TGG - chr3_3:83173948-83173967 None:intergenic 35.0%
! TTATGTCTCGTGTTACTCTT+CGG + chr3_3:83174026-83174045 Msa0478440:intron 35.0%
TTGAGCTTATAAAGAGTGGT+TGG + chr3_3:83174143-83174162 Msa0478440:intron 35.0%
TGAGCTTATAAAGAGTGGTT+GGG + chr3_3:83174144-83174163 Msa0478440:intron 35.0%
!!! AGATTATTTTTTTCCGGTGG+TGG + chr3_3:83174285-83174304 Msa0478440:intron 35.0%
!!! GATTATTTTTTTCCGGTGGT+GGG + chr3_3:83174286-83174305 Msa0478440:intron 35.0%
!!! ATTATTTTTTTCCGGTGGTG+GGG + chr3_3:83174287-83174306 Msa0478440:intron 35.0%
CTTAAAGATGGTAAGGTAGA+CGG - chr3_3:83174679-83174698 None:intergenic 35.0%
AAGAAGGCTTAAAGATGGTA+AGG - chr3_3:83174686-83174705 None:intergenic 35.0%
ACTTACTGTGTTTGTTTCCT+GGG + chr3_3:83174746-83174765 Msa0478440:intron 35.0%
AGGAGTAAAATTAAGGGACT+AGG - chr3_3:83174793-83174812 None:intergenic 35.0%
!! TGTTGATTCATTGTAGGATG+AGG + chr3_3:83174883-83174902 Msa0478440:intron 35.0%
! TCACCACTTGAGTTAGATTT+TGG + chr3_3:83174991-83175010 Msa0478440:intron 35.0%
GGGAATTCTAATTTAACCCA+AGG + chr3_3:83175024-83175043 Msa0478440:intron 35.0%
GAGAAAATCTGGAAAATCCT+TGG - chr3_3:83175044-83175063 None:intergenic 35.0%
ATGAACCGATTGAGAAAATC+TGG - chr3_3:83175055-83175074 None:intergenic 35.0%
!! TTTATGGTGTTGCGTATTTC+AGG + chr3_3:83175223-83175242 Msa0478440:intron 35.0%
!! TTATGGTGTTGCGTATTTCA+GGG + chr3_3:83175224-83175243 Msa0478440:intron 35.0%
! CAATTGCCGGAAACATATTT+TGG - chr3_3:83175289-83175308 None:intergenic 35.0%
ACCAGTGAAAAATCAATTGC+CGG - chr3_3:83175302-83175321 None:intergenic 35.0%
TCACTGGTAAATGGAAAAAG+TGG + chr3_3:83175314-83175333 Msa0478440:intron 35.0%
ATTATGGTTGAGGTTTAGGA+TGG + chr3_3:83175669-83175688 Msa0478440:intron 35.0%
CCTAAATTACCCTAAGGAAA+AGG - chr3_3:83175695-83175714 None:intergenic 35.0%
! CCTTTTCCTTAGGGTAATTT+AGG + chr3_3:83175692-83175711 Msa0478440:intron 35.0%
TTAGGGTAATAAGTGTCCTA+AGG + chr3_3:83175710-83175729 Msa0478440:intron 35.0%
AATAAGTGTCCTAAGGACAT+TGG + chr3_3:83175717-83175736 Msa0478440:intron 35.0%
GGATTGTTTAAGGAAACAAG+AGG - chr3_3:83175844-83175863 None:intergenic 35.0%
TTTCCTTAAACAATCCCCTT+AGG + chr3_3:83175848-83175867 Msa0478440:intron 35.0%
TTCCTTAAACAATCCCCTTA+GGG + chr3_3:83175849-83175868 Msa0478440:intron 35.0%
AACGTTAATAAGTGCCCTAA+GGG - chr3_3:83175866-83175885 None:intergenic 35.0%
! GGAGTATTTATGAGTTGGAT+AGG + chr3_3:83175939-83175958 Msa0478440:intron 35.0%
!! TTAAGTGGGATTAGCTACAT+GGG - chr3_3:83176002-83176021 None:intergenic 35.0%
!! ATTAAGTGGGATTAGCTACA+TGG - chr3_3:83176003-83176022 None:intergenic 35.0%
ATGTAGCTAATCCCACTTAA+TGG + chr3_3:83176002-83176021 Msa0478440:intron 35.0%
TGTAGCTAATCCCACTTAAT+GGG + chr3_3:83176003-83176022 Msa0478440:intron 35.0%
TAATCCCACTTAATGGGATA+AGG + chr3_3:83176009-83176028 Msa0478440:intron 35.0%
CAAACCTTATCCCATTAAGT+GGG - chr3_3:83176016-83176035 None:intergenic 35.0%
TATGGAATAGAAAACCACTG+TGG - chr3_3:83176216-83176235 None:intergenic 35.0%
TTCCATACTCTAAGTGCTTT+CGG + chr3_3:83176229-83176248 Msa0478440:CDS 35.0%
TTGTCAAGCCTTTCTTGTAT+TGG + chr3_3:83176561-83176580 Msa0478440:intron 35.0%
GCAAAGCTGTGAAAATAGAA+GGG - chr3_3:83176609-83176628 None:intergenic 35.0%
AGCAAAGCTGTGAAAATAGA+AGG - chr3_3:83176610-83176629 None:intergenic 35.0%
TTCAGTGGTCATCATTGATA+GGG + chr3_3:83176644-83176663 Msa0478440:CDS 35.0%
! TGAGCTTTTCTCCAGTTATA+TGG + chr3_3:83176879-83176898 Msa0478440:three_prime_UTR 35.0%
TTCTTTCACCCTAGAAAGAA+GGG + chr3_3:83177072-83177091 Msa0478440:three_prime_UTR 35.0%
GCCAAAAAGGCAATCAAAAT+CGG + chr3_3:83177125-83177144 Msa0478440:three_prime_UTR 35.0%
!!! TCCGATTTTGATTGCCTTTT+TGG - chr3_3:83177129-83177148 None:intergenic 35.0%
TGCTTACTAGTACGGAAAAA+TGG + chr3_3:83177195-83177214 Msa0478440:three_prime_UTR 35.0%
TTGTGATGAAATGAGTGTGG+GGG - chr3_3:83171975-83171994 None:intergenic 40.0%
GTTGTGATGAAATGAGTGTG+GGG - chr3_3:83171976-83171995 None:intergenic 40.0%
GGTTGTGATGAAATGAGTGT+GGG - chr3_3:83171977-83171996 None:intergenic 40.0%
AGGTTGTGATGAAATGAGTG+TGG - chr3_3:83171978-83171997 None:intergenic 40.0%
GAGAGAAAGAGGATCGTAAT+TGG - chr3_3:83172062-83172081 None:intergenic 40.0%
AAGGTGAATGAGAGAGAAAG+AGG - chr3_3:83172073-83172092 None:intergenic 40.0%
TACTCCCTATCTCACAATGA+GGG - chr3_3:83172487-83172506 None:intergenic 40.0%
TTACTCCCTATCTCACAATG+AGG - chr3_3:83172488-83172507 None:intergenic 40.0%
! GTGACTTGCAAAGTTCATCA+CGG - chr3_3:83172684-83172703 None:intergenic 40.0%
! TTGCAAGTCACGCTTTCTTT+TGG + chr3_3:83172693-83172712 Msa0478440:intron 40.0%
! TGCAAGTCACGCTTTCTTTT+GGG + chr3_3:83172694-83172713 Msa0478440:intron 40.0%
GCAGATATGGATACTTCTTC+AGG + chr3_3:83172735-83172754 Msa0478440:intron 40.0%
! AGAGTTTTACAACGGTGCAA+CGG - chr3_3:83172777-83172796 None:intergenic 40.0%
! CCAGGTGAAGAGTTTTACAA+CGG - chr3_3:83172785-83172804 None:intergenic 40.0%
! AAAACTCTTCACCTGGTTTG+TGG + chr3_3:83172789-83172808 Msa0478440:intron 40.0%
AGCTAAAATTGCCACAAACC+AGG - chr3_3:83172803-83172822 None:intergenic 40.0%
GTCTAACCTGCATACAAGTT+TGG - chr3_3:83172890-83172909 None:intergenic 40.0%
CTTCAACATTGTGAAACCCT+TGG - chr3_3:83172917-83172936 None:intergenic 40.0%
CAAGGGTTTCACAATGTTGA+AGG + chr3_3:83172915-83172934 Msa0478440:CDS 40.0%
CATACGATAAGTACGCATCA+GGG - chr3_3:83172950-83172969 None:intergenic 40.0%
TCATACGATAAGTACGCATC+AGG - chr3_3:83172951-83172970 None:intergenic 40.0%
TTATTGTTTCCCCCTTGTTG+AGG + chr3_3:83173307-83173326 Msa0478440:CDS 40.0%
GAAGTTGTGTTTGCATGACT+TGG - chr3_3:83173484-83173503 None:intergenic 40.0%
TCTGTTATAAAAGAGAGGGG+AGG + chr3_3:83173556-83173575 Msa0478440:intron 40.0%
CTGTTATAAAAGAGAGGGGA+GGG + chr3_3:83173557-83173576 Msa0478440:intron 40.0%
TGTTATAAAAGAGAGGGGAG+GGG + chr3_3:83173558-83173577 Msa0478440:intron 40.0%
AGGAGAGTTTCTCTCTAGTT+AGG + chr3_3:83173619-83173638 Msa0478440:intron 40.0%
CAATGGTGGCAAAACAGAAA+AGG - chr3_3:83173689-83173708 None:intergenic 40.0%
GCTTAAGATCTCTACAATGG+TGG - chr3_3:83173703-83173722 None:intergenic 40.0%
CGAGCTTAAGATCTCTACAA+TGG - chr3_3:83173706-83173725 None:intergenic 40.0%
! TATGTCTCGTGTTACTCTTC+GGG + chr3_3:83174027-83174046 Msa0478440:intron 40.0%
ATTCTCATTCATCAGAGGAG+GGG - chr3_3:83174403-83174422 None:intergenic 40.0%
CATTCTCATTCATCAGAGGA+GGG - chr3_3:83174404-83174423 None:intergenic 40.0%
ACATTCTCATTCATCAGAGG+AGG - chr3_3:83174405-83174424 None:intergenic 40.0%
TCCTCTGATGAATGAGAATG+TGG + chr3_3:83174404-83174423 Msa0478440:CDS 40.0%
TCCACATTCTCATTCATCAG+AGG - chr3_3:83174408-83174427 None:intergenic 40.0%
CAAAGCTCTACTGCTACAAA+TGG - chr3_3:83174471-83174490 None:intergenic 40.0%
! TTGCTTTGCAGTTTGGAATC+TGG + chr3_3:83174526-83174545 Msa0478440:intron 40.0%
! TGCTTTGCAGTTTGGAATCT+GGG + chr3_3:83174527-83174546 Msa0478440:intron 40.0%
CACTTACTGTGTTTGTTTCC+TGG + chr3_3:83174745-83174764 Msa0478440:intron 40.0%
!! GAAGGCTGTTGATTCATTGT+AGG + chr3_3:83174877-83174896 Msa0478440:intron 40.0%
!! TATGGTGTTGCGTATTTCAG+GGG + chr3_3:83175225-83175244 Msa0478440:intron 40.0%
CATCCTTGTGATAAGAGAAG+AGG + chr3_3:83175251-83175270 Msa0478440:CDS 40.0%
ATGCCTCTTCTCTTATCACA+AGG - chr3_3:83175257-83175276 None:intergenic 40.0%
!! TCCGGCAATTGATTTTTCAC+TGG + chr3_3:83175298-83175317 Msa0478440:CDS 40.0%
TTCCAAAAATTTCAGTCCCC+TGG - chr3_3:83175526-83175545 None:intergenic 40.0%
!! GGGGACTGAAATTTTTGGAA+TGG + chr3_3:83175526-83175545 Msa0478440:CDS 40.0%
!! TTTAGGATGGCCTTTTCCTT+AGG + chr3_3:83175682-83175701 Msa0478440:intron 40.0%
! TTAGGATGGCCTTTTCCTTA+GGG + chr3_3:83175683-83175702 Msa0478440:intron 40.0%
! TCCTAAGGACATTGGTTAAG+AGG + chr3_3:83175725-83175744 Msa0478440:intron 40.0%
ACCTCTTAACCAATGTCCTT+AGG - chr3_3:83175729-83175748 None:intergenic 40.0%
ACGTTAATAAGTGCCCTAAG+GGG - chr3_3:83175865-83175884 None:intergenic 40.0%
CAACGTTAATAAGTGCCCTA+AGG - chr3_3:83175867-83175886 None:intergenic 40.0%
CCAAACCTTATCCCATTAAG+TGG - chr3_3:83176017-83176036 None:intergenic 40.0%
CCACTTAATGGGATAAGGTT+TGG + chr3_3:83176014-83176033 Msa0478440:intron 40.0%
! TCATATCTCTGTATTGGTCC+AGG + chr3_3:83176152-83176171 Msa0478440:intron 40.0%
GTTATGGACACGCAAAGAAA+AGG + chr3_3:83176174-83176193 Msa0478440:CDS 40.0%
!! TTCCGAAAGCACTTAGAGTA+TGG - chr3_3:83176234-83176253 None:intergenic 40.0%
GTTCAGTGGTCATCATTGAT+AGG + chr3_3:83176643-83176662 Msa0478440:CDS 40.0%
TCAGTGGTCATCATTGATAG+GGG + chr3_3:83176645-83176664 Msa0478440:CDS 40.0%
! TGGAATTTTGCCAGGAAAGT+TGG - chr3_3:83176784-83176803 None:intergenic 40.0%
TTTCCTGGCAAAATTCCACA+GGG + chr3_3:83176786-83176805 Msa0478440:CDS 40.0%
TTGCTGACGAGAAACTTTCT+GGG + chr3_3:83176829-83176848 Msa0478440:CDS 40.0%
!! CTTCTTTCTAGGGTGAAAGA+AGG - chr3_3:83177073-83177092 None:intergenic 40.0%
CTTCTTTCACCCTAGAAAGA+AGG + chr3_3:83177071-83177090 Msa0478440:three_prime_UTR 40.0%
!! AGTATTGGTGGTAGCCAAAA+AGG + chr3_3:83177112-83177131 Msa0478440:three_prime_UTR 40.0%
!! TGGTGCTGTTATAGTTGGCA+TGG - chr3_3:83171903-83171922 None:intergenic 45.0%
!! TGTGGTGGTGCTGTTATAGT+TGG - chr3_3:83171908-83171927 None:intergenic 45.0%
TGTGATGAAATGAGTGTGGG+GGG - chr3_3:83171974-83171993 None:intergenic 45.0%
GAAGATACGCGAAGTGAATG+TGG - chr3_3:83172028-83172047 None:intergenic 45.0%
! GCAAAGAAAGAGCGTGGAAA+AGG - chr3_3:83172092-83172111 None:intergenic 45.0%
TTGGAAGCAAAGAAAGAGCG+TGG - chr3_3:83172098-83172117 None:intergenic 45.0%
TGTGTCCCTCATTGTGAGAT+AGG + chr3_3:83172479-83172498 Msa0478440:intron 45.0%
GTGTCCCTCATTGTGAGATA+GGG + chr3_3:83172480-83172499 Msa0478440:intron 45.0%
! GAGTTTTACAACGGTGCAAC+GGG - chr3_3:83172776-83172795 None:intergenic 45.0%
CCGTTGTAAAACTCTTCACC+TGG + chr3_3:83172782-83172801 Msa0478440:CDS 45.0%
CTTCATTCCCGCAATATTCC+AGG + chr3_3:83173185-83173204 Msa0478440:intron 45.0%
! AGAGAGCATGTTAAGGCAAG+CGG + chr3_3:83173261-83173280 Msa0478440:CDS 45.0%
! TGTTTGCATGACTTGGGTCT+TGG - chr3_3:83173477-83173496 None:intergenic 45.0%
TTAGTACCCTGCCCGAATTT+AGG + chr3_3:83173527-83173546 Msa0478440:intron 45.0%
TAGTACCCTGCCCGAATTTA+GGG + chr3_3:83173528-83173547 Msa0478440:intron 45.0%
AAATCCCCTAAATTCGGGCA+GGG - chr3_3:83173536-83173555 None:intergenic 45.0%
AAAATCCCCTAAATTCGGGC+AGG - chr3_3:83173537-83173556 None:intergenic 45.0%
AAGTCGTGCTTGCATGACTT+GGG + chr3_3:83173791-83173810 Msa0478440:intron 45.0%
ATTTGAATAGACCCCACCAC+CGG - chr3_3:83174301-83174320 None:intergenic 45.0%
CAAACAGCAGTTGGAGTCTT+TGG + chr3_3:83174348-83174367 Msa0478440:CDS 45.0%
AGCTCTACTGCTACAAATGG+TGG - chr3_3:83174468-83174487 None:intergenic 45.0%
ATAATCTTACAGCAGCTCCC+AGG - chr3_3:83174766-83174785 None:intergenic 45.0%
TGAGGACATGAAGTGTGTGT+TGG + chr3_3:83174901-83174920 Msa0478440:intron 45.0%
GAGGACATGAAGTGTGTGTT+GGG + chr3_3:83174902-83174921 Msa0478440:intron 45.0%
!! ATGGTGTTGCGTATTTCAGG+GGG + chr3_3:83175226-83175245 Msa0478440:intron 45.0%
TGTTTAGATAGAGCGCGATG+AGG + chr3_3:83175452-83175471 Msa0478440:intron 45.0%
AGAATGAAGAAGTTGCTGCC+AGG + chr3_3:83175505-83175524 Msa0478440:CDS 45.0%
GAATGAAGAAGTTGCTGCCA+GGG + chr3_3:83175506-83175525 Msa0478440:CDS 45.0%
AATGAAGAAGTTGCTGCCAG+GGG + chr3_3:83175507-83175526 Msa0478440:CDS 45.0%
! TGCCAGGGGACTGAAATTTT+TGG + chr3_3:83175521-83175540 Msa0478440:CDS 45.0%
TGCCCTAAGGGGATTGTTTA+AGG - chr3_3:83175854-83175873 None:intergenic 45.0%
! CTCTGTATTGGTCCAGGTTA+TGG + chr3_3:83176158-83176177 Msa0478440:intron 45.0%
TTCTTTGCGTGTCCATAACC+TGG - chr3_3:83176173-83176192 None:intergenic 45.0%
! ATTGCTGTTGTTAGCCACAG+TGG + chr3_3:83176199-83176218 Msa0478440:CDS 45.0%
TAATTGTGAGCTGCGTTCAG+TGG + chr3_3:83176629-83176648 Msa0478440:CDS 45.0%
CAGTGGTCATCATTGATAGG+GGG + chr3_3:83176646-83176665 Msa0478440:CDS 45.0%
!! TTTGCCAGGAAAGTTGGTAG+AGG - chr3_3:83176778-83176797 None:intergenic 45.0%
CTTTCCTGGCAAAATTCCAC+AGG + chr3_3:83176785-83176804 Msa0478440:CDS 45.0%
TTCTCGTCAGCAACATCACT+GGG - chr3_3:83176822-83176841 None:intergenic 45.0%
TTTCTCGTCAGCAACATCAC+TGG - chr3_3:83176823-83176842 None:intergenic 45.0%
GTTGCTGACGAGAAACTTTC+TGG + chr3_3:83176828-83176847 Msa0478440:CDS 45.0%
! ACGAGAAACTTTCTGGGAGT+GGG + chr3_3:83176835-83176854 Msa0478440:CDS 45.0%
GAGAAAGCGGGAAGAGAATA+AGG - chr3_3:83177027-83177046 None:intergenic 45.0%
CAAAATCGGAGCCATGGTAA+AGG + chr3_3:83177139-83177158 Msa0478440:three_prime_UTR 45.0%
!! ATATATATATATATATATAC+TGG + chr3_3:83172656-83172675 Msa0478440:intron 5.0%
GTGATGAAATGAGTGTGGGG+GGG - chr3_3:83171973-83171992 None:intergenic 50.0%
TGGAGAACGTTGAGATACGC+GGG - chr3_3:83172008-83172027 None:intergenic 50.0%
GTGGAGAACGTTGAGATACG+CGG - chr3_3:83172009-83172028 None:intergenic 50.0%
TACAACGGTGCAACGGGTAA+AGG - chr3_3:83172770-83172789 None:intergenic 50.0%
ATGCAGGTTAGACATGCCCA+AGG + chr3_3:83172897-83172916 Msa0478440:intron 50.0%
TGCAGGTTAGACATGCCCAA+GGG + chr3_3:83172898-83172917 Msa0478440:intron 50.0%
AGTACCCTGCCCGAATTTAG+GGG + chr3_3:83173529-83173548 Msa0478440:intron 50.0%
GAAGTCGTGCTTGCATGACT+TGG + chr3_3:83173790-83173809 Msa0478440:intron 50.0%
! TGCTTGCATGACTTGGGTCT+TGG + chr3_3:83173797-83173816 Msa0478440:intron 50.0%
AGGACCATGCAAACAGCAGT+TGG + chr3_3:83174339-83174358 Msa0478440:intron 50.0%
! GACTCCAACTGCTGTTTGCA+TGG - chr3_3:83174346-83174365 None:intergenic 50.0%
ACAGCAGTTGGAGTCTTTGG+TGG + chr3_3:83174351-83174370 Msa0478440:CDS 50.0%
!! AGTTGGAGTCTTTGGTGGTG+AGG + chr3_3:83174356-83174375 Msa0478440:CDS 50.0%
CACCACATACCAAATGCTCG+CGG - chr3_3:83174494-83174513 None:intergenic 50.0%
! TTGCAGTTTGGAATCTGGGC+TGG + chr3_3:83174531-83174550 Msa0478440:intron 50.0%
! AGCGCGATGAGGACATTTTG+TGG + chr3_3:83175463-83175482 Msa0478440:CDS 50.0%
GAGTCCTCTACCAACTTTCC+TGG + chr3_3:83176771-83176790 Msa0478440:CDS 50.0%
CAACATCACTGGGAAGGTCA+AGG - chr3_3:83176812-83176831 None:intergenic 50.0%
! GACGAGAAACTTTCTGGGAG+TGG + chr3_3:83176834-83176853 Msa0478440:CDS 50.0%
GGCAATCAAAATCGGAGCCA+TGG + chr3_3:83177133-83177152 Msa0478440:three_prime_UTR 50.0%
GAGTGTGGGGGGGATAAAAC+TGG - chr3_3:83171963-83171982 None:intergenic 55.0%
AACGTTGAGATACGCGGGGA+TGG - chr3_3:83172003-83172022 None:intergenic 55.0%
GGAGAACGTTGAGATACGCG+GGG - chr3_3:83172007-83172026 None:intergenic 55.0%
CTTCGCGTATCTTCTCGCTC+AGG + chr3_3:83172034-83172053 Msa0478440:CDS 55.0%
GATGCAAGTCTCACCCCTCT+CGG + chr3_3:83172978-83172997 Msa0478440:CDS 55.0%
TTACCTGCTTCCAGCCGAGA+GGG - chr3_3:83172995-83173014 None:intergenic 55.0%
ATTACCTGCTTCCAGCCGAG+AGG - chr3_3:83172996-83173015 None:intergenic 55.0%
AGAGCTTTGCCGCGAGCATT+TGG + chr3_3:83174482-83174501 Msa0478440:CDS 55.0%
TGCCGCGAGCATTTGGTATG+TGG + chr3_3:83174489-83174508 Msa0478440:intron 55.0%
! AGGCCCTGTGGAATTTTGCC+AGG - chr3_3:83176792-83176811 None:intergenic 55.0%
CGTCAGCAACATCACTGGGA+AGG - chr3_3:83176818-83176837 None:intergenic 55.0%
!! AGGGTGAAAGAAGGTGCCAG+AGG - chr3_3:83177064-83177083 None:intergenic 55.0%
TACCTGCTTCCAGCCGAGAG+GGG - chr3_3:83172994-83173013 None:intergenic 60.0%
GGTGGTGAGGCACACACTGA+TGG + chr3_3:83174369-83174388 Msa0478440:CDS 60.0%
TGAGATACGCGGGGATGGCG+AGG - chr3_3:83171998-83172017 None:intergenic 65.0%
CAAGTCTCACCCCTCTCGGC+TGG + chr3_3:83172982-83173001 Msa0478440:CDS 65.0%
CTGGGAAGGTCAAGGCCCTG+TGG - chr3_3:83176804-83176823 None:intergenic 65.0%
CACCCCTCTCGGCTGGAAGC+AGG + chr3_3:83172989-83173008 Msa0478440:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 83171814 83177223 83171814 ID=Msa0478440;Name=Msa0478440
chr3_3 mRNA 83171814 83177223 83171814 ID=Msa0478440-mRNA-1;Parent=Msa0478440;Name=Msa0478440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=88|1|1|1|1|1|10|354|337
chr3_3 exon 83171814 83172055 83171814 ID=Msa0478440-mRNA-1:exon:23264;Parent=Msa0478440-mRNA-1
chr3_3 exon 83172739 83172803 83172739 ID=Msa0478440-mRNA-1:exon:23265;Parent=Msa0478440-mRNA-1
chr3_3 exon 83172903 83173010 83172903 ID=Msa0478440-mRNA-1:exon:23266;Parent=Msa0478440-mRNA-1
chr3_3 exon 83173249 83173328 83173249 ID=Msa0478440-mRNA-1:exon:23267;Parent=Msa0478440-mRNA-1
chr3_3 exon 83174341 83174503 83174341 ID=Msa0478440-mRNA-1:exon:23268;Parent=Msa0478440-mRNA-1
chr3_3 exon 83175245 83175319 83175245 ID=Msa0478440-mRNA-1:exon:23269;Parent=Msa0478440-mRNA-1
chr3_3 exon 83175459 83175547 83175459 ID=Msa0478440-mRNA-1:exon:23270;Parent=Msa0478440-mRNA-1
chr3_3 exon 83176174 83176293 83176174 ID=Msa0478440-mRNA-1:exon:23271;Parent=Msa0478440-mRNA-1
chr3_3 exon 83176623 83176667 83176623 ID=Msa0478440-mRNA-1:exon:23272;Parent=Msa0478440-mRNA-1
chr3_3 exon 83176755 83177223 83176755 ID=Msa0478440-mRNA-1:exon:23273;Parent=Msa0478440-mRNA-1
chr3_3 five_prime_UTR 83171814 83171901 83171814 ID=Msa0478440-mRNA-1:five_prime_utr;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83171902 83172055 83171902 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83172739 83172803 83172739 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83172903 83173010 83172903 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83173249 83173328 83173249 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83174341 83174503 83174341 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83175245 83175319 83175245 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83175459 83175547 83175459 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83176174 83176293 83176174 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83176623 83176667 83176623 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 CDS 83176755 83176869 83176755 ID=Msa0478440-mRNA-1:cds;Parent=Msa0478440-mRNA-1
chr3_3 three_prime_UTR 83176870 83177223 83176870 ID=Msa0478440-mRNA-1:three_prime_utr;Parent=Msa0478440-mRNA-1
Gene Sequence

>Msa0478440

ATGCCAACTATAACAGCACCACCACATTCCACTATTTTATTAAACAAGAACAAGAATTCCAGTTTTATCCCCCCCACACTCATTTCATCACAACCTCGCCATCCCCGCGTATCTCAACGTTCTCCACATTCACTTCGCGTATCTTCTCGCTCAGATATGGATACTTCTTCAGGTCAAAGCATCCTTTACCCGTTGCACCGTTGTAAAACTCTTCACCTGGTTAGACATGCCCAAGGGTTTCACAATGTTGAAGGAGACAAGAACCCTGATGCGTACTTATCGTATGATCTTTTTGATGCAAGTCTCACCCCTCTCGGCTGGAAGCAGGTCGATAATCTGAGAGAGCATGTTAAGGCAAGCGGTCTTTCCAAAAAAATTGAACTAGTTATTGTTTCCCCCTTGTTGAGGACCATGCAAACAGCAGTTGGAGTCTTTGGTGGTGAGGCACACACTGATGGAGTTGATGCCCCTCCTCTGATGAATGAGAATGTGGAGAATAGCAGTCGTCATGCAATTTCTAGTCTGAATTCGCCACCATTTGTAGCAGTAGAGCTTTGCCGCGAGCATTTGGGGGTGCATCCTTGTGATAAGAGAAGAGGCATCAGTGAGTACCAAAATATGTTTCCGGCAATTGATTTTTCACTGATAGAGCGCGATGAGGACATTTTGTGGAAACCTGATATTAGAGAGAAGAATGAAGAAGTTGCTGCCAGGGGACTGAAATTTTTGGAATGGTTATGGACACGCAAAGAAAAGGAGATTGCTGTTGTTAGCCACAGTGGTTTTCTATTCCATACTCTAAGTGCTTTCGGAAATGATTGTCATGCAAATGTGAAGAGTGAAATCTGCACACACTTTGCTAATTGTGAGCTGCGTTCAGTGGTCATCATTGATAGGGGGATGATTGGATCAGATGAGTCCTCTACCAACTTTCCTGGCAAAATTCCACAGGGCCTTGACCTTCCCAGTGATGTTGCTGACGAGAAACTTTCTGGGAGTGGGCCATCAAAGTAA

Protein sequence

>Msa0478440

MPTITAPPHSTILLNKNKNSSFIPPTLISSQPRHPRVSQRSPHSLRVSSRSDMDTSSGQSILYPLHRCKTLHLVRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLREHVKASGLSKKIELVIVSPLLRTMQTAVGVFGGEAHTDGVDAPPLMNENVENSSRHAISSLNSPPFVAVELCREHLGVHPCDKRRGISEYQNMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKFLEWLWTRKEKEIAVVSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGMIGSDESSTNFPGKIPQGLDLPSDVADEKLSGSGPSK*