Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478490 | XP_003603712.1 | 98.958 | 192 | 2 | 0 | 1 | 192 | 1 | 192 | 3.58e-139 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478490 | sp|Q99MM4|TRAD1_RAT | 33.333 | 141 | 92 | 2 | 1 | 140 | 1 | 140 | 4.28e-22 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478490 | G7J4M2 | 98.958 | 192 | 2 | 0 | 1 | 192 | 1 | 192 | 1.71e-139 | 396 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0414950 | Msa0478490 | 0.806871 | 6.664007e-50 | -8.615850e-47 |
| Msa0434720 | Msa0478490 | 0.863406 | 2.547613e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478490 | MtrunA17_Chr3g0141211 | 98.958 | 192 | 2 | 0 | 1 | 192 | 1 | 192 | 3.30e-143 | 396 |
| Msa0478490 | MtrunA17_Chr5g0427911 | 67.164 | 201 | 57 | 2 | 1 | 192 | 1 | 201 | 1.49e-100 | 288 |
| Msa0478490 | MtrunA17_Chr5g0439731 | 28.846 | 156 | 79 | 4 | 9 | 133 | 411 | 565 | 5.97e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478490 | AT1G09920.1 | 66.667 | 195 | 54 | 2 | 1 | 187 | 1 | 192 | 2.44e-90 | 263 |
| Msa0478490 | AT4G15420.2 | 27.381 | 168 | 90 | 4 | 1 | 137 | 515 | 681 | 1.27e-16 | 77.8 |
| Msa0478490 | AT4G15420.1 | 27.381 | 168 | 90 | 4 | 1 | 137 | 392 | 558 | 3.81e-14 | 70.5 |
Find 58 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATAACCATTGGGTATT+TGG | 0.116991 | 3_3:+83255459 | None:intergenic |
| ATGGGGAGATTTCGGAATTT+AGG | 0.232320 | 3_3:+83258710 | None:intergenic |
| ATTAGGTTATGGGGAGATTT+CGG | 0.255058 | 3_3:+83258702 | None:intergenic |
| CCTCTGCTAATGCACATTAC+TGG | 0.270494 | 3_3:+83255599 | None:intergenic |
| TAAATACATACGAGATTGTT+TGG | 0.284822 | 3_3:-83255174 | None:intergenic |
| TGATCTTGAGCATGTATCTT+TGG | 0.328151 | 3_3:+83258284 | None:intergenic |
| AATTATTGTAGTTCTGCATT+TGG | 0.335010 | 3_3:-83255418 | Msa0478490:three_prime_UTR |
| TTACAAAGGTTACGGGAATT+AGG | 0.337405 | 3_3:+83258685 | None:intergenic |
| TGCTCTGGCAGATCAATTGC+AGG | 0.385813 | 3_3:+83257073 | None:intergenic |
| AAATACATACGAGATTGTTT+GGG | 0.388614 | 3_3:-83255173 | None:intergenic |
| AGGTTACGGGAATTAGGTTA+TGG | 0.388918 | 3_3:+83258691 | None:intergenic |
| TATTCAACGAACTAATCTTC+AGG | 0.397027 | 3_3:+83258625 | None:intergenic |
| ATGTAAGCTTTGTGGTGATA+TGG | 0.405008 | 3_3:-83258309 | Msa0478490:CDS |
| AATGACTCAAATTTATCTCT+TGG | 0.410237 | 3_3:+83255386 | None:intergenic |
| TGTTTCACTGCACAATGAAC+AGG | 0.411626 | 3_3:+83257180 | None:intergenic |
| CTCTGCTAATGCACATTACT+GGG | 0.415693 | 3_3:+83255600 | None:intergenic |
| AATTGATCTGCCAGAGCATC+AGG | 0.420849 | 3_3:-83257068 | Msa0478490:intron |
| GAGAGTGATTACAAAGGTTA+CGG | 0.428574 | 3_3:+83258677 | None:intergenic |
| TTTGATAGATAAACAGCTAA+TGG | 0.429627 | 3_3:+83255349 | None:intergenic |
| TCGTTCGCATCTCTTTCAGC+TGG | 0.432058 | 3_3:+83255711 | None:intergenic |
| ACAATGCTGCAGGGTCTTCA+AGG | 0.432443 | 3_3:-83256847 | Msa0478490:intron |
| AGAGTGATTACAAAGGTTAC+GGG | 0.457009 | 3_3:+83258678 | None:intergenic |
| TGCACTCTGTTCATTGCGCT+CGG | 0.459032 | 3_3:-83258343 | Msa0478490:CDS |
| ACTCACAGGTGACAATCCTC+TGG | 0.461845 | 3_3:+83257113 | None:intergenic |
| TGCAAATCAATATTTGCAGC+TGG | 0.468442 | 3_3:+83258362 | None:intergenic |
| GACCACTACACCTGATGCTC+TGG | 0.469028 | 3_3:+83257058 | None:intergenic |
| AAATACTGCATAATGTCTGT+TGG | 0.485861 | 3_3:-83255329 | Msa0478490:three_prime_UTR |
| GGCAGATCAATTGCAGGCAA+TGG | 0.486110 | 3_3:+83257079 | None:intergenic |
| TGAATACGAATGAATTATAC+AGG | 0.487152 | 3_3:+83255536 | None:intergenic |
| GGTTACGGGAATTAGGTTAT+GGG | 0.491009 | 3_3:+83258692 | None:intergenic |
| AATACTGCATAATGTCTGTT+GGG | 0.496531 | 3_3:-83255328 | Msa0478490:three_prime_UTR |
| GCATATGCTAGTGGCTTGAT+CGG | 0.497634 | 3_3:+83258556 | None:intergenic |
| CATATGCTAGTGGCTTGATC+GGG | 0.536358 | 3_3:+83258557 | None:intergenic |
| AACGAAGTCTTTACCAGTGA+GGG | 0.541665 | 3_3:+83258534 | None:intergenic |
| GGAATACAAGACAATGCTGC+AGG | 0.543487 | 3_3:-83256857 | Msa0478490:CDS |
| ACTGGTATTGCTGTCATACT+CGG | 0.564517 | 3_3:-83255651 | Msa0478490:CDS |
| CTCACAGGTGACAATCCTCT+GGG | 0.566762 | 3_3:+83257114 | None:intergenic |
| GCAAATCAATATTTGCAGCT+GGG | 0.574261 | 3_3:+83258363 | None:intergenic |
| CCACTAGCATATGCCCTCAC+TGG | 0.575285 | 3_3:-83258547 | Msa0478490:intron |
| AATCATGAATTCAATTGCAA+CGG | 0.578333 | 3_3:-83256878 | Msa0478490:CDS |
| CTATTTAAACACCCATGCAC+CGG | 0.581826 | 3_3:-83258261 | Msa0478490:intron |
| AATTGTGACATACCGGTGCA+TGG | 0.591733 | 3_3:+83258249 | None:intergenic |
| TTCATTGTGCAGTGAAACAA+TGG | 0.598362 | 3_3:-83257176 | Msa0478490:CDS |
| ATTAAAGAGAGTGATTACAA+AGG | 0.599545 | 3_3:+83258671 | None:intergenic |
| CGGAATTTAGGAATGAAACA+CGG | 0.603093 | 3_3:+83258722 | None:intergenic |
| GTCTGACATATTTGTTACAG+AGG | 0.611676 | 3_3:+83256915 | None:intergenic |
| CCAGTGAGGGCATATGCTAG+TGG | 0.613863 | 3_3:+83258547 | None:intergenic |
| TGGAAACTCACAGAACTCAC+AGG | 0.615594 | 3_3:+83257099 | None:intergenic |
| GACTGTCACCAAATACCCAA+TGG | 0.630717 | 3_3:-83255467 | Msa0478490:three_prime_UTR |
| AATGTGCATTAGCAGAGGAG+AGG | 0.637785 | 3_3:-83255594 | Msa0478490:exon |
| GTTACGGGAATTAGGTTATG+GGG | 0.642926 | 3_3:+83258693 | None:intergenic |
| ATTGTGACATACCGGTGCAT+GGG | 0.646887 | 3_3:+83258250 | None:intergenic |
| TGAAACACGGAACCAGAACA+CGG | 0.651719 | 3_3:+83258735 | None:intergenic |
| CCAGTAATGTGCATTAGCAG+AGG | 0.653614 | 3_3:-83255599 | Msa0478490:exon |
| CACAGGTGACAATCCTCTGG+GGG | 0.654397 | 3_3:+83257116 | None:intergenic |
| GAATACAAGACAATGCTGCA+GGG | 0.679707 | 3_3:-83256856 | Msa0478490:CDS |
| AAACGAAGTCTTTACCAGTG+AGG | 0.695221 | 3_3:+83258533 | None:intergenic |
| TCACAGGTGACAATCCTCTG+GGG | 0.714936 | 3_3:+83257115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAACCAATTTTAATAAAA+TGG | - | chr3_3:83255760-83255779 | Msa0478490:intron | 10.0% |
| !!! | TTAACCAATTTTAATAAAAT+GGG | - | chr3_3:83255761-83255780 | Msa0478490:intron | 10.0% |
| !!! | TTTTTCTAATTTTTTATGTT+AGG | + | chr3_3:83256649-83256668 | None:intergenic | 10.0% |
| !! | CATAAAAAATTAGAAAAAAT+TGG | - | chr3_3:83256651-83256670 | Msa0478490:intron | 10.0% |
| !!! | ATTGAAAGTCTTATTTTTTA+TGG | - | chr3_3:83255557-83255576 | Msa0478490:three_prime_UTR | 15.0% |
| !!! | TTTGATCTTTAATAACTTTT+AGG | - | chr3_3:83256996-83257015 | Msa0478490:intron | 15.0% |
| !!! | AAAAATAATAGACTTCATTT+TGG | + | chr3_3:83257447-83257466 | None:intergenic | 15.0% |
| !!! | AAATGAAGTCTATTATTTTT+AGG | - | chr3_3:83257447-83257466 | Msa0478490:intron | 15.0% |
| !! | AAAAAAGAAATAGAAGTAAA+TGG | + | chr3_3:83258216-83258235 | None:intergenic | 15.0% |
| !! | ATTCAAAAACAAGTTTGATT+AGG | + | chr3_3:83255516-83255535 | None:intergenic | 20.0% |
| !!! | TTATGGTTTATTTTAGTGAT+CGG | - | chr3_3:83255574-83255593 | Msa0478490:three_prime_UTR | 20.0% |
| !! | GATGGTTTATAATTATAGAT+TGG | + | chr3_3:83255821-83255840 | None:intergenic | 20.0% |
| !! | AAATGAAATAGTAGATTGAT+AGG | - | chr3_3:83255892-83255911 | Msa0478490:intron | 20.0% |
| !!! | TGATATACTCAAATTGATTT+AGG | - | chr3_3:83255936-83255955 | Msa0478490:intron | 20.0% |
| !!! | GATATACTCAAATTGATTTA+GGG | - | chr3_3:83255937-83255956 | Msa0478490:intron | 20.0% |
| !! | AATTAAGTATCAATGAAGAT+TGG | - | chr3_3:83256208-83256227 | Msa0478490:intron | 20.0% |
| !!! | TAAGCAACATTTTTTGTAAT+GGG | + | chr3_3:83256319-83256338 | None:intergenic | 20.0% |
| !!! | AATATTTTATATATGCACGA+AGG | - | chr3_3:83256817-83256836 | Msa0478490:intron | 20.0% |
| !! | ATGCAAATTTCTTAATTCAA+AGG | + | chr3_3:83256941-83256960 | None:intergenic | 20.0% |
| !! | AATAAGCAAATAGAATAGTT+AGG | + | chr3_3:83257214-83257233 | None:intergenic | 20.0% |
| !!! | CTATTTGCTTATTCAAATTT+TGG | - | chr3_3:83257221-83257240 | Msa0478490:intron | 20.0% |
| !!! | TCTATTATTTTTAGGTGATT+GGG | - | chr3_3:83257455-83257474 | Msa0478490:intron | 20.0% |
| !! | AAGTTTAAATTAACAAGTCA+AGG | - | chr3_3:83257957-83257976 | Msa0478490:intron | 20.0% |
| !!! | GGATTATGAATTTATGATTT+TGG | - | chr3_3:83258024-83258043 | Msa0478490:intron | 20.0% |
| !!! | ATCTATTTTTATTCAGAGAA+AGG | - | chr3_3:83258337-83258356 | Msa0478490:CDS | 20.0% |
| !! | AAAAAAAATGCATAACCATT+GGG | + | chr3_3:83258516-83258535 | None:intergenic | 20.0% |
| !! | AAAAAAAAATGCATAACCAT+TGG | + | chr3_3:83258517-83258536 | None:intergenic | 20.0% |
| ! | ATTAAAGAGAGTGATTACAA+AGG | + | chr3_3:83255297-83255316 | None:intergenic | 25.0% |
| !!! | TATGGTTTATTTTAGTGATC+GGG | - | chr3_3:83255575-83255594 | Msa0478490:three_prime_UTR | 25.0% |
| !! | GAAGCCCATTTTATTAAAAT+TGG | + | chr3_3:83255768-83255787 | None:intergenic | 25.0% |
| ! | GGTTTATAATTATAGATTGG+TGG | + | chr3_3:83255818-83255837 | None:intergenic | 25.0% |
| ! | AAATAGTAGATTGATAGGAT+GGG | - | chr3_3:83255897-83255916 | Msa0478490:intron | 25.0% |
| !!! | TTTTTAAGCGAAACTTGAAT+AGG | - | chr3_3:83255990-83256009 | Msa0478490:intron | 25.0% |
| !! | GGTTAATTTGAAATGTTCAT+TGG | - | chr3_3:83256018-83256037 | Msa0478490:intron | 25.0% |
| !!! | AGTTTCTTTCTTTAACTTGT+CGG | - | chr3_3:83256240-83256259 | Msa0478490:intron | 25.0% |
| !!! | AAGCAACATTTTTTGTAATG+GGG | + | chr3_3:83256318-83256337 | None:intergenic | 25.0% |
| !!! | CTAAGCAACATTTTTTGTAA+TGG | + | chr3_3:83256320-83256339 | None:intergenic | 25.0% |
| !! | TAGCTTTTGTAATGTTTTCT+TGG | - | chr3_3:83256398-83256417 | Msa0478490:intron | 25.0% |
| ! | GTAATCATGTATGTACTATT+TGG | - | chr3_3:83256468-83256487 | Msa0478490:intron | 25.0% |
| ! | AAGATTCATATCAGTCATAA+AGG | - | chr3_3:83256587-83256606 | Msa0478490:intron | 25.0% |
| ! | AGATTCATATCAGTCATAAA+GGG | - | chr3_3:83256588-83256607 | Msa0478490:intron | 25.0% |
| !! | TCAATAAGTCAAAGTTTGTT+AGG | + | chr3_3:83256720-83256739 | None:intergenic | 25.0% |
| !!! | AATAACTTTTAGGAAGTATG+TGG | - | chr3_3:83257006-83257025 | Msa0478490:intron | 25.0% |
| !!! | ATAACTTTTAGGAAGTATGT+GGG | - | chr3_3:83257007-83257026 | Msa0478490:intron | 25.0% |
| ! | AATCATGAATTCAATTGCAA+CGG | - | chr3_3:83257087-83257106 | Msa0478490:CDS | 25.0% |
| ! | ATTTCAACTTAAGCCTAATA+GGG | + | chr3_3:83257333-83257352 | None:intergenic | 25.0% |
| !!! | TCACTTAAGTTTGTTATTGT+AGG | - | chr3_3:83257390-83257409 | Msa0478490:intron | 25.0% |
| !! | ATAATAGACTTCATTTTGGA+CGG | + | chr3_3:83257443-83257462 | None:intergenic | 25.0% |
| !!! | GTCTATTATTTTTAGGTGAT+TGG | - | chr3_3:83257454-83257473 | Msa0478490:intron | 25.0% |
| !!! | CTATTATTTTTAGGTGATTG+GGG | - | chr3_3:83257456-83257475 | Msa0478490:intron | 25.0% |
| !!! | GTTTAGCAACTGTTTTTTTA+AGG | - | chr3_3:83257478-83257497 | Msa0478490:intron | 25.0% |
| !!! | AACTGTTTTTTTAAGGTTGT+TGG | - | chr3_3:83257485-83257504 | Msa0478490:intron | 25.0% |
| ! | ACTCATAAATATTAACCAGT+TGG | + | chr3_3:83257569-83257588 | None:intergenic | 25.0% |
| ! | AGGCTTAATGCTAAATAATA+GGG | - | chr3_3:83257660-83257679 | Msa0478490:intron | 25.0% |
| !!! | AACATTTTTAAGCAGATCAA+AGG | + | chr3_3:83257693-83257712 | None:intergenic | 25.0% |
| ! | AACTGGTCATACTATTATTA+TGG | + | chr3_3:83257813-83257832 | None:intergenic | 25.0% |
| !!! | GTAATCGATTTTCTTTTGTT+AGG | - | chr3_3:83258003-83258022 | Msa0478490:intron | 25.0% |
| !! | CCACAATAGAATAACAATTT+TGG | + | chr3_3:83258053-83258072 | None:intergenic | 25.0% |
| !! | CCAAAATTGTTATTCTATTG+TGG | - | chr3_3:83258050-83258069 | Msa0478490:intron | 25.0% |
| ! | TTAGTGTCATAAATCTTACT+TGG | - | chr3_3:83258109-83258128 | Msa0478490:intron | 25.0% |
| !!! | TCTATTTCTTTTTTCTGTGA+AGG | - | chr3_3:83258222-83258241 | Msa0478490:intron | 25.0% |
| !! | TTTTTCACAATAGCTATAAC+TGG | - | chr3_3:83258296-83258315 | Msa0478490:CDS | 25.0% |
| ! | TGAATACGAATGAATTATAC+AGG | + | chr3_3:83258432-83258451 | None:intergenic | 25.0% |
| !! | AATTATTGTAGTTCTGCATT+TGG | - | chr3_3:83258547-83258566 | Msa0478490:intron | 25.0% |
| ! | AATGACTCAAATTTATCTCT+TGG | + | chr3_3:83258582-83258601 | None:intergenic | 25.0% |
| ! | TTTGATAGATAAACAGCTAA+TGG | + | chr3_3:83258619-83258638 | None:intergenic | 25.0% |
| TATTCAACGAACTAATCTTC+AGG | + | chr3_3:83255343-83255362 | None:intergenic | 30.0% | |
| ! | TTCGTTGAATAACGTTTTGT+TGG | - | chr3_3:83255352-83255371 | Msa0478490:three_prime_UTR | 30.0% |
| CTTGAAAAATGTAAGCTTTG+TGG | - | chr3_3:83255648-83255667 | Msa0478490:CDS | 30.0% | |
| !!! | TGGGCTTCACAATTTTAATT+AGG | - | chr3_3:83255780-83255799 | Msa0478490:intron | 30.0% |
| GAAATAGTAGATTGATAGGA+TGG | - | chr3_3:83255896-83255915 | Msa0478490:intron | 30.0% | |
| ! | TACTCAAATTGATTTAGGGA+TGG | - | chr3_3:83255941-83255960 | Msa0478490:intron | 30.0% |
| ! | ACTCAAATTGATTTAGGGAT+GGG | - | chr3_3:83255942-83255961 | Msa0478490:intron | 30.0% |
| TGTTAATGATGGTAACTGAA+TGG | + | chr3_3:83256057-83256076 | None:intergenic | 30.0% | |
| TTACCATCATTAACATAAGC+CGG | - | chr3_3:83256062-83256081 | Msa0478490:intron | 30.0% | |
| !!! | TTTTTGAAACTCTTGACAGT+TGG | - | chr3_3:83256152-83256171 | Msa0478490:intron | 30.0% |
| CAATTAGTGCTTCAGTTTAT+AGG | - | chr3_3:83256352-83256371 | Msa0478490:intron | 30.0% | |
| ! | CAACACGGATTATATATTGT+CGG | - | chr3_3:83256431-83256450 | Msa0478490:intron | 30.0% |
| CATGTATGTACTATTTGGAA+CGG | - | chr3_3:83256473-83256492 | Msa0478490:intron | 30.0% | |
| ! | ATGTATGTACTATTTGGAAC+GGG | - | chr3_3:83256474-83256493 | Msa0478490:intron | 30.0% |
| TGATACAACGAAAATAAGAC+TGG | + | chr3_3:83256548-83256567 | None:intergenic | 30.0% | |
| GATTCATATCAGTCATAAAG+GGG | - | chr3_3:83256589-83256608 | Msa0478490:intron | 30.0% | |
| ATTAGAAAAAATTGGGAGTC+TGG | - | chr3_3:83256659-83256678 | Msa0478490:intron | 30.0% | |
| AAAGAAAATGTGAATTGTGC+AGG | - | chr3_3:83256759-83256778 | Msa0478490:intron | 30.0% | |
| TAATCTATGTAGTATAACCG+AGG | - | chr3_3:83256961-83256980 | Msa0478490:intron | 30.0% | |
| TCAAACTAAAATTAGTGCCT+CGG | + | chr3_3:83256981-83257000 | None:intergenic | 30.0% | |
| CATGTAATACTTGCACAAAA+TGG | + | chr3_3:83257248-83257267 | None:intergenic | 30.0% | |
| CATTTCAACTTAAGCCTAAT+AGG | + | chr3_3:83257334-83257353 | None:intergenic | 30.0% | |
| CTTACAAGTACAATCTTTAG+TGG | - | chr3_3:83257637-83257656 | Msa0478490:intron | 30.0% | |
| GAGGCTTAATGCTAAATAAT+AGG | - | chr3_3:83257659-83257678 | Msa0478490:intron | 30.0% | |
| !! | AGTACTGAGGTATATTTTGA+AGG | - | chr3_3:83257853-83257872 | Msa0478490:intron | 30.0% |
| ! | GTATCTTTAGAGGAGTAAAA+TGG | - | chr3_3:83258153-83258172 | Msa0478490:intron | 30.0% |
| AGAAGTAAATGGTTTACTCA+AGG | + | chr3_3:83258205-83258224 | None:intergenic | 30.0% | |
| ! | GAAAAAAAGACGTCTTTTTG+AGG | + | chr3_3:83258282-83258301 | None:intergenic | 30.0% |
| AAATACTGCATAATGTCTGT+TGG | - | chr3_3:83258636-83258655 | Msa0478490:five_prime_UTR | 30.0% | |
| AATACTGCATAATGTCTGTT+GGG | - | chr3_3:83258637-83258656 | Msa0478490:five_prime_UTR | 30.0% | |
| ! | GAACACGGATTTTTGTACTT+AGG | + | chr3_3:83255218-83255237 | None:intergenic | 35.0% |
| AAGTACAAAAATCCGTGTTC+TGG | - | chr3_3:83255218-83255237 | Msa0478490:intron | 35.0% | |
| CGGAATTTAGGAATGAAACA+CGG | + | chr3_3:83255246-83255265 | None:intergenic | 35.0% | |
| ATTAGGTTATGGGGAGATTT+CGG | + | chr3_3:83255266-83255285 | None:intergenic | 35.0% | |
| TTACAAAGGTTACGGGAATT+AGG | + | chr3_3:83255283-83255302 | None:intergenic | 35.0% | |
| AGAGTGATTACAAAGGTTAC+GGG | + | chr3_3:83255290-83255309 | None:intergenic | 35.0% | |
| GAGAGTGATTACAAAGGTTA+CGG | + | chr3_3:83255291-83255310 | None:intergenic | 35.0% | |
| GCAAATCAATATTTGCAGCT+GGG | + | chr3_3:83255605-83255624 | None:intergenic | 35.0% | |
| TGCAAATCAATATTTGCAGC+TGG | + | chr3_3:83255606-83255625 | None:intergenic | 35.0% | |
| ! | ATGTAAGCTTTGTGGTGATA+TGG | - | chr3_3:83255656-83255675 | Msa0478490:CDS | 35.0% |
| TGATCTTGAGCATGTATCTT+TGG | + | chr3_3:83255684-83255703 | None:intergenic | 35.0% | |
| AGCAAGTAATTGTGACATAC+CGG | + | chr3_3:83255726-83255745 | None:intergenic | 35.0% | |
| CTATTCTATCTCTACGAAAC+TGG | + | chr3_3:83255857-83255876 | None:intergenic | 35.0% | |
| CAGTTTCGTAGAGATAGAAT+AGG | - | chr3_3:83255855-83255874 | Msa0478490:intron | 35.0% | |
| ! | AAATTGATTTAGGGATGGGT+GGG | - | chr3_3:83255946-83255965 | Msa0478490:intron | 35.0% |
| GCGAAACTTGAATAGGAAAA+TGG | - | chr3_3:83255997-83256016 | Msa0478490:intron | 35.0% | |
| GCATTATGTTTGGCATCAAA+TGG | - | chr3_3:83256095-83256114 | Msa0478490:intron | 35.0% | |
| ATCTAATCCTTCTAGATGCT+TGG | + | chr3_3:83256124-83256143 | None:intergenic | 35.0% | |
| ! | AATTTTGCTAGCATCACTTC+TGG | - | chr3_3:83256177-83256196 | Msa0478490:intron | 35.0% |
| ! | ATTTTGCTAGCATCACTTCT+GGG | - | chr3_3:83256178-83256197 | Msa0478490:intron | 35.0% |
| !! | TTCTTTCTTTAACTTGTCGG+AGG | - | chr3_3:83256243-83256262 | Msa0478490:intron | 35.0% |
| ! | GGTTTTCCTGAAATGATTCT+AGG | - | chr3_3:83256275-83256294 | Msa0478490:intron | 35.0% |
| GGATATCCTAGAATCATTTC+AGG | + | chr3_3:83256284-83256303 | None:intergenic | 35.0% | |
| ! | TGTAATGGGGAATTACTAAG+AGG | + | chr3_3:83256305-83256324 | None:intergenic | 35.0% |
| AGTGCTTCAGTTTATAGGTT+TGG | - | chr3_3:83256357-83256376 | Msa0478490:intron | 35.0% | |
| !!! | CTTGGTAGTTTTGTTCAACA+CGG | - | chr3_3:83256416-83256435 | Msa0478490:intron | 35.0% |
| ! | TACTATTTGGAACGGGAATT+CGG | - | chr3_3:83256481-83256500 | Msa0478490:intron | 35.0% |
| TCGGTGGAAAATTTGTAGTA+AGG | - | chr3_3:83256500-83256519 | Msa0478490:intron | 35.0% | |
| TTCATTGTGCAGTGAAACAA+TGG | - | chr3_3:83256789-83256808 | Msa0478490:intron | 35.0% | |
| ! | GTCTGACATATTTGTTACAG+AGG | + | chr3_3:83257053-83257072 | None:intergenic | 35.0% |
| !! | TGCAAGTTTTAGTCTTTCTG+AGG | - | chr3_3:83257168-83257187 | Msa0478490:CDS | 35.0% |
| !! | GCAAGTTTTAGTCTTTCTGA+GGG | - | chr3_3:83257169-83257188 | Msa0478490:CDS | 35.0% |
| ! | TTAGTCTTTCTGAGGGTTAA+TGG | - | chr3_3:83257176-83257195 | Msa0478490:CDS | 35.0% |
| ! | GCTTTTGTTCCTGTTAGTTA+CGG | - | chr3_3:83257285-83257304 | Msa0478490:intron | 35.0% |
| GTATTAACTCCGTAACTAAC+AGG | + | chr3_3:83257297-83257316 | None:intergenic | 35.0% | |
| ! | AGTGAGTGCTTTTCTTTAGA+GGG | + | chr3_3:83257375-83257394 | None:intergenic | 35.0% |
| ! | AAGTGAGTGCTTTTCTTTAG+AGG | + | chr3_3:83257376-83257395 | None:intergenic | 35.0% |
| ACAAGTACAATCTTTAGTGG+AGG | - | chr3_3:83257640-83257659 | Msa0478490:intron | 35.0% | |
| AATCACGAAGTTCACTTATG+TGG | + | chr3_3:83257755-83257774 | None:intergenic | 35.0% | |
| TTATTCTATTGTGGTCTACG+TGG | - | chr3_3:83258059-83258078 | Msa0478490:intron | 35.0% | |
| TATTCTATTGTGGTCTACGT+GGG | - | chr3_3:83258060-83258079 | Msa0478490:intron | 35.0% | |
| GTGTCATAAATCTTACTTGG+AGG | - | chr3_3:83258112-83258131 | Msa0478490:intron | 35.0% | |
| AGATACACTTGACATCAACT+TGG | + | chr3_3:83258139-83258158 | None:intergenic | 35.0% | |
| GATGTCAAGTGTATCTTTAG+AGG | - | chr3_3:83258143-83258162 | Msa0478490:intron | 35.0% | |
| ! | TTTTTCTGTGAAGGAATGAG+AGG | - | chr3_3:83258231-83258250 | Msa0478490:intron | 35.0% |
| ATGCATAACCATTGGGTATT+TGG | + | chr3_3:83258509-83258528 | None:intergenic | 35.0% | |
| ATGGGGAGATTTCGGAATTT+AGG | + | chr3_3:83255258-83255277 | None:intergenic | 40.0% | |
| GTTACGGGAATTAGGTTATG+GGG | + | chr3_3:83255275-83255294 | None:intergenic | 40.0% | |
| GGTTACGGGAATTAGGTTAT+GGG | + | chr3_3:83255276-83255295 | None:intergenic | 40.0% | |
| AGGTTACGGGAATTAGGTTA+TGG | + | chr3_3:83255277-83255296 | None:intergenic | 40.0% | |
| AACGAAGTCTTTACCAGTGA+GGG | + | chr3_3:83255434-83255453 | None:intergenic | 40.0% | |
| AAACGAAGTCTTTACCAGTG+AGG | + | chr3_3:83255435-83255454 | None:intergenic | 40.0% | |
| CTATTTAAACACCCATGCAC+CGG | - | chr3_3:83255704-83255723 | Msa0478490:CDS | 40.0% | |
| AGTAGATTGATAGGATGGGT+TGG | - | chr3_3:83255901-83255920 | Msa0478490:intron | 40.0% | |
| ! | GTAGATTGATAGGATGGGTT+GGG | - | chr3_3:83255902-83255921 | Msa0478490:intron | 40.0% |
| ! | CAAATTGATTTAGGGATGGG+TGG | - | chr3_3:83255945-83255964 | Msa0478490:intron | 40.0% |
| CATCCGGCTTATGTTAATGA+TGG | + | chr3_3:83256068-83256087 | None:intergenic | 40.0% | |
| CATCATTAACATAAGCCGGA+TGG | - | chr3_3:83256066-83256085 | Msa0478490:intron | 40.0% | |
| ! | ATGGACCAAGGCATTATGTT+TGG | - | chr3_3:83256085-83256104 | Msa0478490:intron | 40.0% |
| TGATGCCAAACATAATGCCT+TGG | + | chr3_3:83256093-83256112 | None:intergenic | 40.0% | |
| TGGGGAACTGAATCAACTAT+GGG | + | chr3_3:83256692-83256711 | None:intergenic | 40.0% | |
| ! | ATAGTTGATTCAGTTCCCCA+GGG | - | chr3_3:83256692-83256711 | Msa0478490:intron | 40.0% |
| TGTTTCACTGCACAATGAAC+AGG | + | chr3_3:83256788-83256807 | None:intergenic | 40.0% | |
| GAATACAAGACAATGCTGCA+GGG | - | chr3_3:83257109-83257128 | Msa0478490:CDS | 40.0% | |
| ! | TCTTTCTGAGGGTTAATGGA+TGG | - | chr3_3:83257180-83257199 | Msa0478490:CDS | 40.0% |
| ! | CTTTCTGAGGGTTAATGGAT+GGG | - | chr3_3:83257181-83257200 | Msa0478490:CDS | 40.0% |
| ! | TTTCTGAGGGTTAATGGATG+GGG | - | chr3_3:83257182-83257201 | Msa0478490:CDS | 40.0% |
| TACGGAGTTAATACTTGCTC+AGG | - | chr3_3:83257303-83257322 | Msa0478490:intron | 40.0% | |
| !! | AGTGCTTTTCTTTAGAGGGA+GGG | + | chr3_3:83257371-83257390 | None:intergenic | 40.0% |
| TTAAGGTTGTTGGAAGCAAC+CGG | - | chr3_3:83257495-83257514 | Msa0478490:intron | 40.0% | |
| ! | TTGTTGTTGTTGGAACCAAC+TGG | - | chr3_3:83257551-83257570 | Msa0478490:intron | 40.0% |
| ! | TTTTCCACCTTTGTGTAGCT+CGG | + | chr3_3:83257732-83257751 | None:intergenic | 40.0% |
| CAGTACTCATCTTACTGCAT+CGG | + | chr3_3:83257840-83257859 | None:intergenic | 40.0% | |
| ! | ATGCAGTAAGATGAGTACTG+AGG | - | chr3_3:83257840-83257859 | Msa0478490:intron | 40.0% |
| CGTGGGATGTAAACATTTAC+TGG | - | chr3_3:83258077-83258096 | Msa0478490:intron | 40.0% | |
| ACTGGTATTGCTGTCATACT+CGG | - | chr3_3:83258314-83258333 | Msa0478490:CDS | 40.0% | |
| CTCTGCTAATGCACATTACT+GGG | + | chr3_3:83258368-83258387 | None:intergenic | 40.0% | |
| TGAAACACGGAACCAGAACA+CGG | + | chr3_3:83255233-83255252 | None:intergenic | 45.0% | |
| CATATGCTAGTGGCTTGATC+GGG | + | chr3_3:83255411-83255430 | None:intergenic | 45.0% | |
| GCATATGCTAGTGGCTTGAT+CGG | + | chr3_3:83255412-83255431 | None:intergenic | 45.0% | |
| ATTGTGACATACCGGTGCAT+GGG | + | chr3_3:83255718-83255737 | None:intergenic | 45.0% | |
| AATTGTGACATACCGGTGCA+TGG | + | chr3_3:83255719-83255738 | None:intergenic | 45.0% | |
| ACTGGATGAGTAGGATTGGA+TGG | + | chr3_3:83255839-83255858 | None:intergenic | 45.0% | |
| CGAAACTGGATGAGTAGGAT+TGG | + | chr3_3:83255843-83255862 | None:intergenic | 45.0% | |
| CTCTACGAAACTGGATGAGT+AGG | + | chr3_3:83255848-83255867 | None:intergenic | 45.0% | |
| !! | ATAGGATGGGTTGGGTACTT+GGG | - | chr3_3:83255910-83255929 | Msa0478490:intron | 45.0% |
| ACATAATGCCTTGGTCCATC+CGG | + | chr3_3:83256084-83256103 | None:intergenic | 45.0% | |
| ATGGTGACCAAGCATCTAGA+AGG | - | chr3_3:83256114-83256133 | Msa0478490:intron | 45.0% | |
| ! | TATTTGGAACGGGAATTCGG+TGG | - | chr3_3:83256484-83256503 | Msa0478490:intron | 45.0% |
| CTGGGGAACTGAATCAACTA+TGG | + | chr3_3:83256693-83256712 | None:intergenic | 45.0% | |
| ! | CATAGTTGATTCAGTTCCCC+AGG | - | chr3_3:83256691-83256710 | Msa0478490:intron | 45.0% |
| !! | AAAGTTTGTTAGGCACCCTG+GGG | + | chr3_3:83256710-83256729 | None:intergenic | 45.0% |
| !! | CAAAGTTTGTTAGGCACCCT+GGG | + | chr3_3:83256711-83256730 | None:intergenic | 45.0% |
| !! | TCAAAGTTTGTTAGGCACCC+TGG | + | chr3_3:83256712-83256731 | None:intergenic | 45.0% |
| TGGAAACTCACAGAACTCAC+AGG | + | chr3_3:83256869-83256888 | None:intergenic | 45.0% | |
| ! | AATTGATCTGCCAGAGCATC+AGG | - | chr3_3:83256897-83256916 | Msa0478490:CDS | 45.0% |
| GGAATACAAGACAATGCTGC+AGG | - | chr3_3:83257108-83257127 | Msa0478490:CDS | 45.0% | |
| ! | TTCTGAGGGTTAATGGATGG+GGG | - | chr3_3:83257183-83257202 | Msa0478490:CDS | 45.0% |
| GGAGTTAATACTTGCTCAGG+TGG | - | chr3_3:83257306-83257325 | Msa0478490:intron | 45.0% | |
| !! | GAGTGCTTTTCTTTAGAGGG+AGG | + | chr3_3:83257372-83257391 | None:intergenic | 45.0% |
| CTTGTACCACTAAGTGGGAT+CGG | + | chr3_3:83257525-83257544 | None:intergenic | 45.0% | |
| ! | CAAGCCTTGTACCACTAAGT+GGG | + | chr3_3:83257530-83257549 | None:intergenic | 45.0% |
| ! | CAAGGCTTGGTTGTTGTTGT+TGG | - | chr3_3:83257541-83257560 | Msa0478490:intron | 45.0% |
| TTGTAGTCCGAGCTACACAA+AGG | - | chr3_3:83257722-83257741 | Msa0478490:intron | 45.0% | |
| CCTCTGCTAATGCACATTAC+TGG | + | chr3_3:83258369-83258388 | None:intergenic | 45.0% | |
| CCAGTAATGTGCATTAGCAG+AGG | - | chr3_3:83258366-83258385 | Msa0478490:CDS | 45.0% | |
| AATGTGCATTAGCAGAGGAG+AGG | - | chr3_3:83258371-83258390 | Msa0478490:CDS | 45.0% | |
| GACTGTCACCAAATACCCAA+TGG | - | chr3_3:83258498-83258517 | Msa0478490:intron | 45.0% | |
| !! | ATAAAAAATTAGAAAAAATT+GGG | - | chr3_3:83256652-83256671 | Msa0478490:intron | 5.0% |
| TGCACTCTGTTCATTGCGCT+CGG | - | chr3_3:83255622-83255641 | Msa0478490:CDS | 50.0% | |
| !! | GATAGGATGGGTTGGGTACT+TGG | - | chr3_3:83255909-83255928 | Msa0478490:intron | 50.0% |
| !! | TAGGGATGGGTGGGTTAGTT+CGG | - | chr3_3:83255955-83255974 | Msa0478490:intron | 50.0% |
| AACATAAGCCGGATGGACCA+AGG | - | chr3_3:83256073-83256092 | Msa0478490:intron | 50.0% | |
| ! | ACTTGTCGGAGGTCTGAAAC+TGG | - | chr3_3:83256254-83256273 | Msa0478490:intron | 50.0% |
| TCACAGGTGACAATCCTCTG+GGG | + | chr3_3:83256853-83256872 | None:intergenic | 50.0% | |
| CTCACAGGTGACAATCCTCT+GGG | + | chr3_3:83256854-83256873 | None:intergenic | 50.0% | |
| ACTCACAGGTGACAATCCTC+TGG | + | chr3_3:83256855-83256874 | None:intergenic | 50.0% | |
| GGCAGATCAATTGCAGGCAA+TGG | + | chr3_3:83256889-83256908 | None:intergenic | 50.0% | |
| TGCTCTGGCAGATCAATTGC+AGG | + | chr3_3:83256895-83256914 | None:intergenic | 50.0% | |
| ACAATGCTGCAGGGTCTTCA+AGG | - | chr3_3:83257118-83257137 | Msa0478490:CDS | 50.0% | |
| TTGCTCAGGTGGTCCCTATT+AGG | - | chr3_3:83257317-83257336 | Msa0478490:intron | 50.0% | |
| CGATCCCACTTAGTGGTACA+AGG | - | chr3_3:83257523-83257542 | Msa0478490:intron | 50.0% | |
| ! | CCAAGCCTTGTACCACTAAG+TGG | + | chr3_3:83257531-83257550 | None:intergenic | 50.0% |
| CCACTTAGTGGTACAAGGCT+TGG | - | chr3_3:83257528-83257547 | Msa0478490:intron | 50.0% | |
| TAGTCCGAGCTACACAAAGG+TGG | - | chr3_3:83257725-83257744 | Msa0478490:intron | 50.0% | |
| !! | CTTACTGCATCGGCTGTAAC+TGG | + | chr3_3:83257830-83257849 | None:intergenic | 50.0% |
| TCGTTCGCATCTCTTTCAGC+TGG | + | chr3_3:83258257-83258276 | None:intergenic | 50.0% | |
| ! | CCAGTGAGGGCATATGCTAG+TGG | + | chr3_3:83255421-83255440 | None:intergenic | 55.0% |
| CCACTAGCATATGCCCTCAC+TGG | - | chr3_3:83255418-83255437 | Msa0478490:three_prime_UTR | 55.0% | |
| AAGGTGAAAGTTGCCCCCAG+AGG | - | chr3_3:83256836-83256855 | Msa0478490:intron | 55.0% | |
| CACAGGTGACAATCCTCTGG+GGG | + | chr3_3:83256852-83256871 | None:intergenic | 55.0% | |
| ! | TGCCAGAGCATCAGGTGTAG+TGG | - | chr3_3:83256905-83256924 | Msa0478490:CDS | 55.0% |
| GACCACTACACCTGATGCTC+TGG | + | chr3_3:83256910-83256929 | None:intergenic | 55.0% | |
| TGCTGCAGGGTCTTCAAGGT+AGG | - | chr3_3:83257122-83257141 | Msa0478490:CDS | 55.0% | |
| ACTAAGTGGGATCGGCTGAC+CGG | + | chr3_3:83257517-83257536 | None:intergenic | 55.0% | |
| GGTCAGCCGATCCCACTTAG+TGG | - | chr3_3:83257516-83257535 | Msa0478490:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83255176 | 83258811 | 83255176 | ID=Msa0478490;Name=Msa0478490 |
| chr3_3 | mRNA | 83255176 | 83258811 | 83255176 | ID=Msa0478490-mRNA-1;Parent=Msa0478490;Name=Msa0478490-mRNA-1;_AED=0.27;_eAED=0.27;_QI=220|1|1|1|0.8|0.66|6|329|192 |
| chr3_3 | exon | 83255176 | 83255208 | 83255176 | ID=Msa0478490-mRNA-1:exon:23353;Parent=Msa0478490-mRNA-1 |
| chr3_3 | exon | 83255309 | 83255743 | 83255309 | ID=Msa0478490-mRNA-1:exon:23352;Parent=Msa0478490-mRNA-1 |
| chr3_3 | exon | 83256848 | 83256969 | 83256848 | ID=Msa0478490-mRNA-1:exon:23351;Parent=Msa0478490-mRNA-1 |
| chr3_3 | exon | 83257069 | 83257206 | 83257069 | ID=Msa0478490-mRNA-1:exon:23350;Parent=Msa0478490-mRNA-1 |
| chr3_3 | exon | 83258262 | 83258397 | 83258262 | ID=Msa0478490-mRNA-1:exon:23349;Parent=Msa0478490-mRNA-1 |
| chr3_3 | exon | 83258548 | 83258811 | 83258548 | ID=Msa0478490-mRNA-1:exon:23348;Parent=Msa0478490-mRNA-1 |
| chr3_3 | five_prime_UTR | 83258592 | 83258811 | 83258592 | ID=Msa0478490-mRNA-1:five_prime_utr;Parent=Msa0478490-mRNA-1 |
| chr3_3 | CDS | 83258548 | 83258591 | 83258548 | ID=Msa0478490-mRNA-1:cds;Parent=Msa0478490-mRNA-1 |
| chr3_3 | CDS | 83258262 | 83258397 | 83258262 | ID=Msa0478490-mRNA-1:cds;Parent=Msa0478490-mRNA-1 |
| chr3_3 | CDS | 83257069 | 83257206 | 83257069 | ID=Msa0478490-mRNA-1:cds;Parent=Msa0478490-mRNA-1 |
| chr3_3 | CDS | 83256848 | 83256969 | 83256848 | ID=Msa0478490-mRNA-1:cds;Parent=Msa0478490-mRNA-1 |
| chr3_3 | CDS | 83255605 | 83255743 | 83255605 | ID=Msa0478490-mRNA-1:cds;Parent=Msa0478490-mRNA-1 |
| chr3_3 | three_prime_UTR | 83255309 | 83255604 | 83255309 | ID=Msa0478490-mRNA-1:three_prime_utr;Parent=Msa0478490-mRNA-1 |
| chr3_3 | three_prime_UTR | 83255176 | 83255208 | 83255176 | ID=Msa0478490-mRNA-1:three_prime_utr;Parent=Msa0478490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
