Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434720 | XP_003603712.1 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 3.30e-137 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434720 | sp|Q99MM4|TRAD1_RAT | 33.333 | 141 | 92 | 2 | 1 | 140 | 1 | 140 | 6.01e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434720 | G7J4M2 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 1.57e-137 | 391 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219250 | Msa0434720 | 0.836849 | 7.353758e-57 | -8.615850e-47 |
| Msa0434720 | Msa0469790 | -0.815037 | 1.135030e-51 | -8.615850e-47 |
| Msa0434720 | Msa0478490 | 0.863406 | 2.547613e-64 | -8.615850e-47 |
| Msa0434720 | Msa0957450 | 0.800477 | 1.415191e-48 | -8.615850e-47 |
| Msa0434720 | Msa1193950 | 0.811345 | 7.334339e-51 | -8.615850e-47 |
| Msa0434720 | Msa1211050 | 0.803181 | 3.940670e-49 | -8.615850e-47 |
| Msa0258880 | Msa0434720 | 0.829999 | 3.759946e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434720 | MtrunA17_Chr3g0141211 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 3.03e-141 | 391 |
| Msa0434720 | MtrunA17_Chr5g0427911 | 67.662 | 201 | 56 | 2 | 1 | 192 | 1 | 201 | 7.06e-101 | 289 |
| Msa0434720 | MtrunA17_Chr5g0439731 | 28.846 | 156 | 79 | 4 | 9 | 133 | 411 | 565 | 8.25e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434720 | AT1G09920.1 | 66.667 | 195 | 54 | 2 | 1 | 187 | 1 | 192 | 1.96e-90 | 263 |
| Msa0434720 | AT4G15420.2 | 27.381 | 168 | 90 | 4 | 1 | 137 | 515 | 681 | 1.88e-16 | 77.0 |
| Msa0434720 | AT4G15420.1 | 27.381 | 168 | 90 | 4 | 1 | 137 | 392 | 558 | 4.52e-14 | 70.1 |
Find 54 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATAACCATTGGGTATT+TGG | 0.116991 | 3_2:+87723841 | None:intergenic |
| AATTTGAGTCATATTATTAA+AGG | 0.237309 | 3_2:-87723749 | Msa0434720:three_prime_UTR |
| CCTCTGCTAATGCACATTAC+TGG | 0.270494 | 3_2:+87723981 | None:intergenic |
| ATCGGGAGATTTCGGAATTT+AGG | 0.272052 | 3_2:+87727173 | None:intergenic |
| TGATCTTGAGCATGTATCTT+TGG | 0.328151 | 3_2:+87726747 | None:intergenic |
| AATTATTGTAGTTCTGCATT+TGG | 0.328190 | 3_2:-87723791 | Msa0434720:three_prime_UTR |
| ATTAGGTTATCGGGAGATTT+CGG | 0.335194 | 3_2:+87727165 | None:intergenic |
| TTACAAAGGTTACGGGAATT+AGG | 0.337405 | 3_2:+87727148 | None:intergenic |
| TGCTCTGGCAGATCAATTGC+AGG | 0.385813 | 3_2:+87725433 | None:intergenic |
| TATTCAACGAACTAATCTTC+AGG | 0.397027 | 3_2:+87727088 | None:intergenic |
| ATGTAAGCTTTGTGGTGATA+TGG | 0.405008 | 3_2:-87726772 | Msa0434720:CDS |
| TGTTTCACTGCACAATGAAC+AGG | 0.411626 | 3_2:+87725540 | None:intergenic |
| CTCTGCTAATGCACATTACT+GGG | 0.415693 | 3_2:+87723982 | None:intergenic |
| TATGACTCAAATTTATCTCT+TGG | 0.419296 | 3_2:+87723759 | None:intergenic |
| AATTGATCTGCCAGAGCATC+AGG | 0.420849 | 3_2:-87725428 | Msa0434720:intron |
| GAGAGTGATTACAAAGGTTA+CGG | 0.428574 | 3_2:+87727140 | None:intergenic |
| TCGTTCGCATCTCTTTCAGC+TGG | 0.432058 | 3_2:+87724093 | None:intergenic |
| ACAATGCTGCAGGGTCTTCA+AGG | 0.432443 | 3_2:-87725207 | Msa0434720:intron |
| AGAGTGATTACAAAGGTTAC+GGG | 0.457009 | 3_2:+87727141 | None:intergenic |
| GGTTACGGGAATTAGGTTAT+CGG | 0.457038 | 3_2:+87727155 | None:intergenic |
| ACTCACAGGTGACAATCCTC+TGG | 0.461845 | 3_2:+87725473 | None:intergenic |
| GACCACTACACCTGATGCTC+TGG | 0.469028 | 3_2:+87725418 | None:intergenic |
| GAGTGCAAATCAATATTTGC+AGG | 0.472364 | 3_2:+87726822 | None:intergenic |
| GTTACGGGAATTAGGTTATC+GGG | 0.474940 | 3_2:+87727156 | None:intergenic |
| TGCACTCTGTCCATTGCGCT+CGG | 0.478848 | 3_2:-87726806 | Msa0434720:CDS |
| GGCAGATCAATTGCAGGCAA+TGG | 0.486110 | 3_2:+87725439 | None:intergenic |
| TGAATACGAATGAATTATAC+AGG | 0.487152 | 3_2:+87723918 | None:intergenic |
| GCATATGCTAGTGGCTTGAT+CGG | 0.499654 | 3_2:+87727019 | None:intergenic |
| CATATGCTAGTGGCTTGATC+GGG | 0.538378 | 3_2:+87727020 | None:intergenic |
| GGAATACAAGACAATGCTGC+AGG | 0.543487 | 3_2:-87725217 | Msa0434720:CDS |
| ACTGGTATTGCTGTCATACT+CGG | 0.564517 | 3_2:-87724033 | Msa0434720:CDS |
| CTCACAGGTGACAATCCTCT+GGG | 0.566762 | 3_2:+87725474 | None:intergenic |
| CCACTAGCATATGCTCTCAC+TGG | 0.575004 | 3_2:-87727010 | Msa0434720:intron |
| AATCATGAATTCAATTGCAA+CGG | 0.578333 | 3_2:-87725238 | Msa0434720:CDS |
| CTATTTAAACACCCATGCAC+CGG | 0.581826 | 3_2:-87726724 | Msa0434720:intron |
| GTAACAAAGAGAGAAAATAG+AGG | 0.585459 | 3_2:+87723716 | None:intergenic |
| AATTGTGACATACCGGTGCA+TGG | 0.591733 | 3_2:+87726712 | None:intergenic |
| TTCATTGTGCAGTGAAACAA+TGG | 0.598362 | 3_2:-87725536 | Msa0434720:CDS |
| TGCAAATCAATATTTGCAGG+TGG | 0.598379 | 3_2:+87726825 | None:intergenic |
| ATTAAAGAGAGTGATTACAA+AGG | 0.599545 | 3_2:+87727134 | None:intergenic |
| CGGAATTTAGGAATGAAACA+CGG | 0.603093 | 3_2:+87727185 | None:intergenic |
| GTCTGACATATTTGTTACAG+AGG | 0.611676 | 3_2:+87725275 | None:intergenic |
| TGGAAACTCACAGAACTCAC+AGG | 0.615594 | 3_2:+87725459 | None:intergenic |
| TTTCAAGGTTCCGAGCGCAA+TGG | 0.616645 | 3_2:+87726796 | None:intergenic |
| GCAAATCAATATTTGCAGGT+GGG | 0.624728 | 3_2:+87726826 | None:intergenic |
| GACTGTCACCAAATACCCAA+TGG | 0.630717 | 3_2:-87723849 | Msa0434720:three_prime_UTR |
| CCAGTGAGAGCATATGCTAG+TGG | 0.631811 | 3_2:+87727010 | None:intergenic |
| AATGTGCATTAGCAGAGGAG+AGG | 0.637785 | 3_2:-87723976 | Msa0434720:exon |
| ATTGTGACATACCGGTGCAT+GGG | 0.646887 | 3_2:+87726713 | None:intergenic |
| TGAAACACGGAACCAGAACA+CGG | 0.651719 | 3_2:+87727198 | None:intergenic |
| CCAGTAATGTGCATTAGCAG+AGG | 0.653614 | 3_2:-87723981 | Msa0434720:exon |
| CACAGGTGACAATCCTCTGG+GGG | 0.654397 | 3_2:+87725476 | None:intergenic |
| GAATACAAGACAATGCTGCA+GGG | 0.679707 | 3_2:-87725216 | Msa0434720:CDS |
| TCACAGGTGACAATCCTCTG+GGG | 0.714936 | 3_2:+87725475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAACCAATTTTAATAAAA+TGG | - | chr3_2:87724254-87724273 | Msa0434720:intron | 10.0% |
| !!! | TTAACCAATTTTAATAAAAT+GGG | - | chr3_2:87724255-87724274 | Msa0434720:intron | 10.0% |
| !!! | TTTTTCTAATTTTTTATGTT+AGG | + | chr3_2:87725246-87725265 | None:intergenic | 10.0% |
| !! | CATAAAAAATTAGAAAAAAT+TGG | - | chr3_2:87725248-87725267 | Msa0434720:CDS | 10.0% |
| !!! | ATTGAAAGTCTTATTTTTTA+TGG | - | chr3_2:87724051-87724070 | Msa0434720:CDS | 15.0% |
| !!! | TTTGATCTTTAATAACTTTT+AGG | - | chr3_2:87725593-87725612 | Msa0434720:intron | 15.0% |
| !! | AAAAAAGAAATAGAAGTAAA+TGG | + | chr3_2:87726791-87726810 | None:intergenic | 15.0% |
| !! | AATTTGAGTCATATTATTAA+AGG | - | chr3_2:87727173-87727192 | Msa0434720:five_prime_UTR | 15.0% |
| !! | ATTCAAAAACAAGTTTGATT+AGG | + | chr3_2:87724010-87724029 | None:intergenic | 20.0% |
| !!! | TTATGGTTTATTTTAGTGAT+CGG | - | chr3_2:87724068-87724087 | Msa0434720:CDS | 20.0% |
| !! | GATGGTTTATAATTATAGAT+TGG | + | chr3_2:87724315-87724334 | None:intergenic | 20.0% |
| !! | AAATGAAATAGTAGATTGAT+AGG | - | chr3_2:87724387-87724406 | Msa0434720:intron | 20.0% |
| !!! | TGATATACTCAAATTGATTT+AGG | - | chr3_2:87724431-87724450 | Msa0434720:intron | 20.0% |
| !!! | GATATACTCAAATTGATTTA+GGG | - | chr3_2:87724432-87724451 | Msa0434720:intron | 20.0% |
| !! | AATTAAGTATCAATGAAGAT+TGG | - | chr3_2:87724803-87724822 | Msa0434720:intron | 20.0% |
| !!! | TAAGCAACATTTTTTGTAAT+GGG | + | chr3_2:87724914-87724933 | None:intergenic | 20.0% |
| !!! | AATATTTTATATATGCACGA+AGG | - | chr3_2:87725414-87725433 | Msa0434720:intron | 20.0% |
| !! | ATGCAAATTTCTTAATTCAA+AGG | + | chr3_2:87725538-87725557 | None:intergenic | 20.0% |
| !!! | AAATTTTTTTAGTCTTTCTG+AGG | - | chr3_2:87725742-87725761 | Msa0434720:intron | 20.0% |
| !!! | AATTTTTTTAGTCTTTCTGA+GGG | - | chr3_2:87725743-87725762 | Msa0434720:intron | 20.0% |
| !! | AATAAGCAAATAGAATAGTT+AGG | + | chr3_2:87725788-87725807 | None:intergenic | 20.0% |
| !!! | CTATTTGCTTATTCAAATTT+TGG | - | chr3_2:87725795-87725814 | Msa0434720:intron | 20.0% |
| !!! | AAAAATAATAGACTTCGTTT+TGG | + | chr3_2:87726021-87726040 | None:intergenic | 20.0% |
| !!! | AAACGAAGTCTATTATTTTT+AGG | - | chr3_2:87726021-87726040 | Msa0434720:intron | 20.0% |
| !!! | TCTATTATTTTTAGGTGATT+GGG | - | chr3_2:87726029-87726048 | Msa0434720:intron | 20.0% |
| !!! | GGATTATGAATTTATGATTT+TGG | - | chr3_2:87726599-87726618 | Msa0434720:intron | 20.0% |
| !!! | ATCTATTTTTATTCAGAGAA+AGG | - | chr3_2:87726912-87726931 | Msa0434720:intron | 20.0% |
| !! | AAAAAAAATGCATAACCATT+GGG | + | chr3_2:87727091-87727110 | None:intergenic | 20.0% |
| !! | TAAAAAAAATGCATAACCAT+TGG | + | chr3_2:87727092-87727111 | None:intergenic | 20.0% |
| ! | ATTAAAGAGAGTGATTACAA+AGG | + | chr3_2:87723791-87723810 | None:intergenic | 25.0% |
| !!! | TATGGTTTATTTTAGTGATC+GGG | - | chr3_2:87724069-87724088 | Msa0434720:CDS | 25.0% |
| !! | GAAGCCCATTTTATTAAAAT+TGG | + | chr3_2:87724262-87724281 | None:intergenic | 25.0% |
| ! | AAATAGTAGATTGATAGGAT+GGG | - | chr3_2:87724392-87724411 | Msa0434720:intron | 25.0% |
| !!! | TTTTTAAGCGAAACTTGAAT+AGG | - | chr3_2:87724485-87724504 | Msa0434720:intron | 25.0% |
| !! | GGTTAATTTGAAATGTTCAT+TGG | - | chr3_2:87724513-87724532 | Msa0434720:intron | 25.0% |
| ! | NNNNCATCATTAACATAAGC+CGG | - | chr3_2:87724657-87724676 | Msa0434720:intron | 25.0% |
| !!! | AGTTTCTTTCTTTAACTTGT+CGG | - | chr3_2:87724835-87724854 | Msa0434720:intron | 25.0% |
| !!! | AAGCAACATTTTTTGTAATG+GGG | + | chr3_2:87724913-87724932 | None:intergenic | 25.0% |
| !!! | CTAAGCAACATTTTTTGTAA+TGG | + | chr3_2:87724915-87724934 | None:intergenic | 25.0% |
| !! | TAGCTTTTGTAATGTTTTCT+TGG | - | chr3_2:87724993-87725012 | Msa0434720:intron | 25.0% |
| ! | GTAATCATGTATGTACTATT+TGG | - | chr3_2:87725065-87725084 | Msa0434720:intron | 25.0% |
| ! | AAGATTCATATCAGTCATAA+AGG | - | chr3_2:87725184-87725203 | Msa0434720:intron | 25.0% |
| ! | AGATTCATATCAGTCATAAA+GGG | - | chr3_2:87725185-87725204 | Msa0434720:intron | 25.0% |
| ! | TCAATAAGTCAAAGATTGTT+AGG | + | chr3_2:87725317-87725336 | None:intergenic | 25.0% |
| !!! | AATAACTTTTAGGAAGTATG+TGG | - | chr3_2:87725603-87725622 | Msa0434720:intron | 25.0% |
| !!! | ATAACTTTTAGGAAGTATGT+GGG | - | chr3_2:87725604-87725623 | Msa0434720:intron | 25.0% |
| ! | AATCATGAATTCAATTGCAA+CGG | - | chr3_2:87725684-87725703 | Msa0434720:intron | 25.0% |
| !!! | TCACTTAAGTTTGTTATTGT+AGG | - | chr3_2:87725964-87725983 | Msa0434720:intron | 25.0% |
| !!! | GTCTATTATTTTTAGGTGAT+TGG | - | chr3_2:87726028-87726047 | Msa0434720:intron | 25.0% |
| !!! | CTATTATTTTTAGGTGATTG+GGG | - | chr3_2:87726030-87726049 | Msa0434720:intron | 25.0% |
| !!! | GTTTAGCAACTGTTTTTTTA+AGG | - | chr3_2:87726052-87726071 | Msa0434720:intron | 25.0% |
| !!! | AACTGTTTTTTTAAGGTTGT+TGG | - | chr3_2:87726059-87726078 | Msa0434720:intron | 25.0% |
| ! | ACTCATAAATATTAACCAGT+TGG | + | chr3_2:87726143-87726162 | None:intergenic | 25.0% |
| ! | AGGCTTAATGCTAAATAATA+GGG | - | chr3_2:87726235-87726254 | Msa0434720:intron | 25.0% |
| !!! | AACATTTTTAAGCAGATCAA+AGG | + | chr3_2:87726268-87726287 | None:intergenic | 25.0% |
| ! | AACTGGTCATACTATTATTA+TGG | + | chr3_2:87726388-87726407 | None:intergenic | 25.0% |
| ! | GAGTTTAAATTAACAAGTCA+AGG | - | chr3_2:87726532-87726551 | Msa0434720:intron | 25.0% |
| !!! | GTAATCGATTTTCTTTTGTT+AGG | - | chr3_2:87726578-87726597 | Msa0434720:intron | 25.0% |
| !! | CCACAATAGAATAACAATTT+TGG | + | chr3_2:87726628-87726647 | None:intergenic | 25.0% |
| !! | CCAAAATTGTTATTCTATTG+TGG | - | chr3_2:87726625-87726644 | Msa0434720:intron | 25.0% |
| ! | TTAGTGTCATAAATCTTACT+TGG | - | chr3_2:87726684-87726703 | Msa0434720:intron | 25.0% |
| !!! | TCTATTTCTTTTTTCTGTGA+AGG | - | chr3_2:87726797-87726816 | Msa0434720:CDS | 25.0% |
| !! | TTTTTCACAATAGCTATAAC+TGG | - | chr3_2:87726871-87726890 | Msa0434720:intron | 25.0% |
| ! | TGAATACGAATGAATTATAC+AGG | + | chr3_2:87727007-87727026 | None:intergenic | 25.0% |
| !! | AATTATTGTAGTTCTGCATT+TGG | - | chr3_2:87727131-87727150 | Msa0434720:five_prime_UTR | 25.0% |
| ! | TATGACTCAAATTTATCTCT+TGG | + | chr3_2:87727166-87727185 | None:intergenic | 25.0% |
| TATTCAACGAACTAATCTTC+AGG | + | chr3_2:87723837-87723856 | None:intergenic | 30.0% | |
| ! | CACAAAGCTTACATTTTTCA+AGG | + | chr3_2:87724144-87724163 | None:intergenic | 30.0% |
| CTTGAAAAATGTAAGCTTTG+TGG | - | chr3_2:87724142-87724161 | Msa0434720:intron | 30.0% | |
| !!! | TGGGCTTCACAATTTTAATT+AGG | - | chr3_2:87724274-87724293 | Msa0434720:intron | 30.0% |
| GAAATAGTAGATTGATAGGA+TGG | - | chr3_2:87724391-87724410 | Msa0434720:intron | 30.0% | |
| ! | TACTCAAATTGATTTAGGGA+TGG | - | chr3_2:87724436-87724455 | Msa0434720:intron | 30.0% |
| ! | ACTCAAATTGATTTAGGGAT+GGG | - | chr3_2:87724437-87724456 | Msa0434720:intron | 30.0% |
| !!! | TTTTTGAAACTCTTGACAGT+TGG | - | chr3_2:87724747-87724766 | Msa0434720:intron | 30.0% |
| CAATTAGTGCTTCAGTTTAT+AGG | - | chr3_2:87724947-87724966 | Msa0434720:intron | 30.0% | |
| ! | CAACACGGATTATATATTGT+CGG | - | chr3_2:87725026-87725045 | Msa0434720:intron | 30.0% |
| ! | ATGTATGTACTATTTGGAAC+AGG | - | chr3_2:87725071-87725090 | Msa0434720:intron | 30.0% |
| ! | TACTATTTGGAACAGGAATT+CGG | - | chr3_2:87725078-87725097 | Msa0434720:intron | 30.0% |
| TGATACAACGAAAATAAGAC+TGG | + | chr3_2:87725145-87725164 | None:intergenic | 30.0% | |
| GATTCATATCAGTCATAAAG+GGG | - | chr3_2:87725186-87725205 | Msa0434720:intron | 30.0% | |
| ATTAGAAAAAATTGGGAGTC+TGG | - | chr3_2:87725256-87725275 | Msa0434720:CDS | 30.0% | |
| TAATCTATGTAGTATAACCG+AGG | - | chr3_2:87725558-87725577 | Msa0434720:intron | 30.0% | |
| TCAAACTAAAATTAGTGCCT+CGG | + | chr3_2:87725578-87725597 | None:intergenic | 30.0% | |
| CATGTAATACTTGCACAAAA+TGG | + | chr3_2:87725822-87725841 | None:intergenic | 30.0% | |
| ATTTCAACGTAAGCCTAATA+GGG | + | chr3_2:87725907-87725926 | None:intergenic | 30.0% | |
| !! | ATAATAGACTTCGTTTTGGA+CGG | + | chr3_2:87726017-87726036 | None:intergenic | 30.0% |
| CTTACAAGTACAATCTTTAG+TGG | - | chr3_2:87726212-87726231 | Msa0434720:intron | 30.0% | |
| GAGGCTTAATGCTAAATAAT+AGG | - | chr3_2:87726234-87726253 | Msa0434720:intron | 30.0% | |
| !! | AGTACTGAGGTATATTTTGA+AGG | - | chr3_2:87726428-87726447 | Msa0434720:intron | 30.0% |
| AGAAGTAAATGGTTTACTCA+AGG | + | chr3_2:87726780-87726799 | None:intergenic | 30.0% | |
| ! | GAAAAAAAGACGTCTTTTTG+AGG | + | chr3_2:87726857-87726876 | None:intergenic | 30.0% |
| GTAACAAAGAGAGAAAATAG+AGG | + | chr3_2:87727209-87727228 | None:intergenic | 30.0% | |
| ! | GAACACGGATTTTTGTACTT+AGG | + | chr3_2:87723712-87723731 | None:intergenic | 35.0% |
| AAGTACAAAAATCCGTGTTC+TGG | - | chr3_2:87723712-87723731 | Msa0434720:three_prime_UTR | 35.0% | |
| CGGAATTTAGGAATGAAACA+CGG | + | chr3_2:87723740-87723759 | None:intergenic | 35.0% | |
| ATTAGGTTATCGGGAGATTT+CGG | + | chr3_2:87723760-87723779 | None:intergenic | 35.0% | |
| TTACAAAGGTTACGGGAATT+AGG | + | chr3_2:87723777-87723796 | None:intergenic | 35.0% | |
| AGAGTGATTACAAAGGTTAC+GGG | + | chr3_2:87723784-87723803 | None:intergenic | 35.0% | |
| GAGAGTGATTACAAAGGTTA+CGG | + | chr3_2:87723785-87723804 | None:intergenic | 35.0% | |
| GCAAATCAATATTTGCAGGT+GGG | + | chr3_2:87724099-87724118 | None:intergenic | 35.0% | |
| TGCAAATCAATATTTGCAGG+TGG | + | chr3_2:87724100-87724119 | None:intergenic | 35.0% | |
| GAGTGCAAATCAATATTTGC+AGG | + | chr3_2:87724103-87724122 | None:intergenic | 35.0% | |
| ! | ATGTAAGCTTTGTGGTGATA+TGG | - | chr3_2:87724150-87724169 | Msa0434720:intron | 35.0% |
| TGATCTTGAGCATGTATCTT+TGG | + | chr3_2:87724178-87724197 | None:intergenic | 35.0% | |
| AGCAAGTAATTGTGACATAC+CGG | + | chr3_2:87724220-87724239 | None:intergenic | 35.0% | |
| CTATTCTATCTCTACGAAAC+TGG | + | chr3_2:87724351-87724370 | None:intergenic | 35.0% | |
| CAGTTTCGTAGAGATAGAAT+AGG | - | chr3_2:87724349-87724368 | Msa0434720:intron | 35.0% | |
| ! | AAATTGATTTAGGGATGGGT+GGG | - | chr3_2:87724441-87724460 | Msa0434720:intron | 35.0% |
| GCGAAACTTGAATAGGAAAA+TGG | - | chr3_2:87724492-87724511 | Msa0434720:intron | 35.0% | |
| GCATTATGTTTGGCATCAAA+TGG | - | chr3_2:87724690-87724709 | Msa0434720:intron | 35.0% | |
| !! | TTCTTTCTTTAACTTGTCGG+AGG | - | chr3_2:87724838-87724857 | Msa0434720:intron | 35.0% |
| ! | TGGTTTTCCTGAAATGATTC+TGG | - | chr3_2:87724869-87724888 | Msa0434720:intron | 35.0% |
| ! | GGTTTTCCTGAAATGATTCT+GGG | - | chr3_2:87724870-87724889 | Msa0434720:intron | 35.0% |
| ! | TGTAATGGGGAATTACTAAG+AGG | + | chr3_2:87724900-87724919 | None:intergenic | 35.0% |
| AGTGCTTCAGTTTATAGGTT+TGG | - | chr3_2:87724952-87724971 | Msa0434720:intron | 35.0% | |
| !!! | CTTGGTAGTTTTGTTCAACA+CGG | - | chr3_2:87725011-87725030 | Msa0434720:intron | 35.0% |
| TCGGTGGAAAATTTGTAGTA+AGG | - | chr3_2:87725097-87725116 | Msa0434720:intron | 35.0% | |
| AAAGAAAATGTGAATCGTGC+AGG | - | chr3_2:87725356-87725375 | Msa0434720:intron | 35.0% | |
| TTCATTGTGCAGTGAAACAA+TGG | - | chr3_2:87725386-87725405 | Msa0434720:intron | 35.0% | |
| ! | GTCTGACATATTTGTTACAG+AGG | + | chr3_2:87725650-87725669 | None:intergenic | 35.0% |
| ! | TTAGTCTTTCTGAGGGTTAA+TGG | - | chr3_2:87725750-87725769 | Msa0434720:intron | 35.0% |
| ! | GCTTTTGTTCCTGTTAGTTA+CGG | - | chr3_2:87725859-87725878 | Msa0434720:intron | 35.0% |
| GTATTAACTCCGTAACTAAC+AGG | + | chr3_2:87725871-87725890 | None:intergenic | 35.0% | |
| CATTTCAACGTAAGCCTAAT+AGG | + | chr3_2:87725908-87725927 | None:intergenic | 35.0% | |
| ! | AGTGAGTGCTTTTCTTTAGA+GGG | + | chr3_2:87725949-87725968 | None:intergenic | 35.0% |
| ! | AAGTGAGTGCTTTTCTTTAG+AGG | + | chr3_2:87725950-87725969 | None:intergenic | 35.0% |
| ACAAGTACAATCTTTAGTGG+AGG | - | chr3_2:87726215-87726234 | Msa0434720:intron | 35.0% | |
| AATCACGAAGTTCACTTATG+TGG | + | chr3_2:87726330-87726349 | None:intergenic | 35.0% | |
| TTATTCTATTGTGGTCTACG+TGG | - | chr3_2:87726634-87726653 | Msa0434720:intron | 35.0% | |
| TATTCTATTGTGGTCTACGT+GGG | - | chr3_2:87726635-87726654 | Msa0434720:intron | 35.0% | |
| GTGTCATAAATCTTACTTGG+AGG | - | chr3_2:87726687-87726706 | Msa0434720:intron | 35.0% | |
| AGATACACTTGACATCAACT+TGG | + | chr3_2:87726714-87726733 | None:intergenic | 35.0% | |
| GTTGATGTCAAGTGTATCTT+TGG | - | chr3_2:87726715-87726734 | Msa0434720:intron | 35.0% | |
| ! | GTATCTTTGGAGGAGTAAAA+TGG | - | chr3_2:87726728-87726747 | Msa0434720:CDS | 35.0% |
| ! | TTTTTCTGTGAAGGAATGAG+AGG | - | chr3_2:87726806-87726825 | Msa0434720:CDS | 35.0% |
| ATGCATAACCATTGGGTATT+TGG | + | chr3_2:87727084-87727103 | None:intergenic | 35.0% | |
| ATCGGGAGATTTCGGAATTT+AGG | + | chr3_2:87723752-87723771 | None:intergenic | 40.0% | |
| GTTACGGGAATTAGGTTATC+GGG | + | chr3_2:87723769-87723788 | None:intergenic | 40.0% | |
| GGTTACGGGAATTAGGTTAT+CGG | + | chr3_2:87723770-87723789 | None:intergenic | 40.0% | |
| CTATTTAAACACCCATGCAC+CGG | - | chr3_2:87724198-87724217 | Msa0434720:intron | 40.0% | |
| AGTAGATTGATAGGATGGGT+TGG | - | chr3_2:87724396-87724415 | Msa0434720:intron | 40.0% | |
| ! | GTAGATTGATAGGATGGGTT+GGG | - | chr3_2:87724397-87724416 | Msa0434720:intron | 40.0% |
| ! | CAAATTGATTTAGGGATGGG+TGG | - | chr3_2:87724440-87724459 | Msa0434720:intron | 40.0% |
| CATCATTAACATAAGCCGGA+TGG | - | chr3_2:87724661-87724680 | Msa0434720:intron | 40.0% | |
| ! | ATGGACCAAGGCATTATGTT+TGG | - | chr3_2:87724680-87724699 | Msa0434720:intron | 40.0% |
| TGATGCCAAACATAATGCCT+TGG | + | chr3_2:87724688-87724707 | None:intergenic | 40.0% | |
| ATCTAATCCTTCTAGACGCT+TGG | + | chr3_2:87724719-87724738 | None:intergenic | 40.0% | |
| ! | AATTTTGCTAGCATCACCTC+TGG | - | chr3_2:87724772-87724791 | Msa0434720:intron | 40.0% |
| ! | ATTTTGCTAGCATCACCTCT+GGG | - | chr3_2:87724773-87724792 | Msa0434720:intron | 40.0% |
| ! | ACTTAATTTTCTGAGCCCAG+AGG | + | chr3_2:87724791-87724810 | None:intergenic | 40.0% |
| GGATATCCCAGAATCATTTC+AGG | + | chr3_2:87724879-87724898 | None:intergenic | 40.0% | |
| ! | TATTTGGAACAGGAATTCGG+TGG | - | chr3_2:87725081-87725100 | Msa0434720:intron | 40.0% |
| AAATTGGGAGTCTGGTCAAA+TGG | - | chr3_2:87725264-87725283 | Msa0434720:CDS | 40.0% | |
| ! | ATAGTTGATTCAGTTCCCCA+GGG | - | chr3_2:87725289-87725308 | Msa0434720:CDS | 40.0% |
| TGTTTCACTGCACAATGAAC+AGG | + | chr3_2:87725385-87725404 | None:intergenic | 40.0% | |
| GAATACAAGACAATGCTGCA+GGG | - | chr3_2:87725706-87725725 | Msa0434720:intron | 40.0% | |
| ! | TCTTTCTGAGGGTTAATGGA+TGG | - | chr3_2:87725754-87725773 | Msa0434720:intron | 40.0% |
| ! | CTTTCTGAGGGTTAATGGAT+GGG | - | chr3_2:87725755-87725774 | Msa0434720:intron | 40.0% |
| ! | TTTCTGAGGGTTAATGGATG+GGG | - | chr3_2:87725756-87725775 | Msa0434720:intron | 40.0% |
| TACGGAGTTAATACTTGCTC+AGG | - | chr3_2:87725877-87725896 | Msa0434720:intron | 40.0% | |
| !! | AGTGCTTTTCTTTAGAGGGA+GGG | + | chr3_2:87725945-87725964 | None:intergenic | 40.0% |
| TTAAGGTTGTTGGAAGCAAC+CGG | - | chr3_2:87726069-87726088 | Msa0434720:intron | 40.0% | |
| ! | TTGTTGTTGTTGGAACCAAC+TGG | - | chr3_2:87726125-87726144 | Msa0434720:intron | 40.0% |
| ! | TTTTCCACCTTTGTGTAGCT+CGG | + | chr3_2:87726307-87726326 | None:intergenic | 40.0% |
| CAGTACTCATCTTACTGCAT+CGG | + | chr3_2:87726415-87726434 | None:intergenic | 40.0% | |
| ! | ATGCAGTAAGATGAGTACTG+AGG | - | chr3_2:87726415-87726434 | Msa0434720:intron | 40.0% |
| CGTGGGATGTAAACATTTAC+TGG | - | chr3_2:87726652-87726671 | Msa0434720:intron | 40.0% | |
| GATGTCAAGTGTATCTTTGG+AGG | - | chr3_2:87726718-87726737 | Msa0434720:intron | 40.0% | |
| ACTGGTATTGCTGTCATACT+CGG | - | chr3_2:87726889-87726908 | Msa0434720:intron | 40.0% | |
| CTCTGCTAATGCACATTACT+GGG | + | chr3_2:87726943-87726962 | None:intergenic | 40.0% | |
| TGAAACACGGAACCAGAACA+CGG | + | chr3_2:87723727-87723746 | None:intergenic | 45.0% | |
| CATATGCTAGTGGCTTGATC+GGG | + | chr3_2:87723905-87723924 | None:intergenic | 45.0% | |
| GCATATGCTAGTGGCTTGAT+CGG | + | chr3_2:87723906-87723925 | None:intergenic | 45.0% | |
| ATTGTGACATACCGGTGCAT+GGG | + | chr3_2:87724212-87724231 | None:intergenic | 45.0% | |
| AATTGTGACATACCGGTGCA+TGG | + | chr3_2:87724213-87724232 | None:intergenic | 45.0% | |
| ACTGGATGAGTAGGATTGGA+TGG | + | chr3_2:87724333-87724352 | None:intergenic | 45.0% | |
| CGAAACTGGATGAGTAGGAT+TGG | + | chr3_2:87724337-87724356 | None:intergenic | 45.0% | |
| CTCTACGAAACTGGATGAGT+AGG | + | chr3_2:87724342-87724361 | None:intergenic | 45.0% | |
| !! | ATAGGATGGGTTGGGTACTT+GGG | - | chr3_2:87724405-87724424 | Msa0434720:intron | 45.0% |
| ACATAATGCCTTGGTCCATC+CGG | + | chr3_2:87724679-87724698 | None:intergenic | 45.0% | |
| CTGGGGAACTGAATCAACTA+TGG | + | chr3_2:87725290-87725309 | None:intergenic | 45.0% | |
| ! | CATAGTTGATTCAGTTCCCC+AGG | - | chr3_2:87725288-87725307 | Msa0434720:CDS | 45.0% |
| AAAGATTGTTAGGCACCCTG+GGG | + | chr3_2:87725307-87725326 | None:intergenic | 45.0% | |
| CAAAGATTGTTAGGCACCCT+GGG | + | chr3_2:87725308-87725327 | None:intergenic | 45.0% | |
| TCAAAGATTGTTAGGCACCC+TGG | + | chr3_2:87725309-87725328 | None:intergenic | 45.0% | |
| TGGAAACTCACAGAACTCAC+AGG | + | chr3_2:87725466-87725485 | None:intergenic | 45.0% | |
| ! | AATTGATCTGCCAGAGCATC+AGG | - | chr3_2:87725494-87725513 | Msa0434720:CDS | 45.0% |
| GGAATACAAGACAATGCTGC+AGG | - | chr3_2:87725705-87725724 | Msa0434720:intron | 45.0% | |
| ! | TTCTGAGGGTTAATGGATGG+GGG | - | chr3_2:87725757-87725776 | Msa0434720:intron | 45.0% |
| GGAGTTAATACTTGCTCAGG+TGG | - | chr3_2:87725880-87725899 | Msa0434720:intron | 45.0% | |
| !! | GAGTGCTTTTCTTTAGAGGG+AGG | + | chr3_2:87725946-87725965 | None:intergenic | 45.0% |
| CTTGTACCACTAAGTGGGAT+CGG | + | chr3_2:87726099-87726118 | None:intergenic | 45.0% | |
| ! | CAAGCCTTGTACCACTAAGT+GGG | + | chr3_2:87726104-87726123 | None:intergenic | 45.0% |
| ! | CAAGGCTTGGTTGTTGTTGT+TGG | - | chr3_2:87726115-87726134 | Msa0434720:intron | 45.0% |
| TTGTAGTCCGAGCTACACAA+AGG | - | chr3_2:87726297-87726316 | Msa0434720:intron | 45.0% | |
| CCTCTGCTAATGCACATTAC+TGG | + | chr3_2:87726944-87726963 | None:intergenic | 45.0% | |
| CCAGTAATGTGCATTAGCAG+AGG | - | chr3_2:87726941-87726960 | Msa0434720:intron | 45.0% | |
| AATGTGCATTAGCAGAGGAG+AGG | - | chr3_2:87726946-87726965 | Msa0434720:intron | 45.0% | |
| GACTGTCACCAAATACCCAA+TGG | - | chr3_2:87727073-87727092 | Msa0434720:five_prime_UTR | 45.0% | |
| !! | ATAAAAAATTAGAAAAAATT+GGG | - | chr3_2:87725249-87725268 | Msa0434720:CDS | 5.0% |
| ! | CCAGTGAGAGCATATGCTAG+TGG | + | chr3_2:87723915-87723934 | None:intergenic | 50.0% |
| CCACTAGCATATGCTCTCAC+TGG | - | chr3_2:87723912-87723931 | Msa0434720:three_prime_UTR | 50.0% | |
| TTTCAAGGTTCCGAGCGCAA+TGG | + | chr3_2:87724129-87724148 | None:intergenic | 50.0% | |
| !! | GATAGGATGGGTTGGGTACT+TGG | - | chr3_2:87724404-87724423 | Msa0434720:intron | 50.0% |
| !! | TAGGGATGGGTGGGTTAGTT+CGG | - | chr3_2:87724450-87724469 | Msa0434720:intron | 50.0% |
| AACATAAGCCGGATGGACCA+AGG | - | chr3_2:87724668-87724687 | Msa0434720:intron | 50.0% | |
| ATGGTGACCAAGCGTCTAGA+AGG | - | chr3_2:87724709-87724728 | Msa0434720:intron | 50.0% | |
| ! | ACTTGTCGGAGGTCTGAAAC+TGG | - | chr3_2:87724849-87724868 | Msa0434720:intron | 50.0% |
| TCACAGGTGACAATCCTCTG+GGG | + | chr3_2:87725450-87725469 | None:intergenic | 50.0% | |
| CTCACAGGTGACAATCCTCT+GGG | + | chr3_2:87725451-87725470 | None:intergenic | 50.0% | |
| ACTCACAGGTGACAATCCTC+TGG | + | chr3_2:87725452-87725471 | None:intergenic | 50.0% | |
| GGCAGATCAATTGCAGGCAA+TGG | + | chr3_2:87725486-87725505 | None:intergenic | 50.0% | |
| TGCTCTGGCAGATCAATTGC+AGG | + | chr3_2:87725492-87725511 | None:intergenic | 50.0% | |
| ACAATGCTGCAGGGTCTTCA+AGG | - | chr3_2:87725715-87725734 | Msa0434720:intron | 50.0% | |
| TTGCTCAGGTGGTCCCTATT+AGG | - | chr3_2:87725891-87725910 | Msa0434720:intron | 50.0% | |
| CGATCCCACTTAGTGGTACA+AGG | - | chr3_2:87726097-87726116 | Msa0434720:intron | 50.0% | |
| ! | CCAAGCCTTGTACCACTAAG+TGG | + | chr3_2:87726105-87726124 | None:intergenic | 50.0% |
| CCACTTAGTGGTACAAGGCT+TGG | - | chr3_2:87726102-87726121 | Msa0434720:intron | 50.0% | |
| TAGTCCGAGCTACACAAAGG+TGG | - | chr3_2:87726300-87726319 | Msa0434720:intron | 50.0% | |
| !! | CTTACTGCATCGGCTGTAAC+TGG | + | chr3_2:87726405-87726424 | None:intergenic | 50.0% |
| TCGTTCGCATCTCTTTCAGC+TGG | + | chr3_2:87726832-87726851 | None:intergenic | 50.0% | |
| TGCACTCTGTCCATTGCGCT+CGG | - | chr3_2:87724116-87724135 | Msa0434720:intron | 55.0% | |
| AAGGTGAAAGTTGCCCCCAG+AGG | - | chr3_2:87725433-87725452 | Msa0434720:CDS | 55.0% | |
| CACAGGTGACAATCCTCTGG+GGG | + | chr3_2:87725449-87725468 | None:intergenic | 55.0% | |
| ! | TGCCAGAGCATCAGGTGTAG+TGG | - | chr3_2:87725502-87725521 | Msa0434720:CDS | 55.0% |
| GACCACTACACCTGATGCTC+TGG | + | chr3_2:87725507-87725526 | None:intergenic | 55.0% | |
| TGCTGCAGGGTCTTCAAGGT+AGG | - | chr3_2:87725719-87725738 | Msa0434720:intron | 55.0% | |
| ACTAAGTGGGATCGGCTGAC+CGG | + | chr3_2:87726091-87726110 | None:intergenic | 55.0% | |
| GGTCAGCCGATCCCACTTAG+TGG | - | chr3_2:87726090-87726109 | Msa0434720:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 87723670 | 87727274 | 87723670 | ID=Msa0434720;Name=Msa0434720 |
| chr3_2 | mRNA | 87723670 | 87727274 | 87723670 | ID=Msa0434720-mRNA-1;Parent=Msa0434720;Name=Msa0434720-mRNA-1;_AED=0.27;_eAED=0.27;_QI=220|1|1|1|1|1|5|317|192 |
| chr3_2 | exon | 87723670 | 87724125 | 87723670 | ID=Msa0434720-mRNA-1:exon:25620;Parent=Msa0434720-mRNA-1 |
| chr3_2 | exon | 87725208 | 87725329 | 87725208 | ID=Msa0434720-mRNA-1:exon:25619;Parent=Msa0434720-mRNA-1 |
| chr3_2 | exon | 87725429 | 87725566 | 87725429 | ID=Msa0434720-mRNA-1:exon:25618;Parent=Msa0434720-mRNA-1 |
| chr3_2 | exon | 87726725 | 87726860 | 87726725 | ID=Msa0434720-mRNA-1:exon:25617;Parent=Msa0434720-mRNA-1 |
| chr3_2 | exon | 87727011 | 87727274 | 87727011 | ID=Msa0434720-mRNA-1:exon:25616;Parent=Msa0434720-mRNA-1 |
| chr3_2 | five_prime_UTR | 87727055 | 87727274 | 87727055 | ID=Msa0434720-mRNA-1:five_prime_utr;Parent=Msa0434720-mRNA-1 |
| chr3_2 | CDS | 87727011 | 87727054 | 87727011 | ID=Msa0434720-mRNA-1:cds;Parent=Msa0434720-mRNA-1 |
| chr3_2 | CDS | 87726725 | 87726860 | 87726725 | ID=Msa0434720-mRNA-1:cds;Parent=Msa0434720-mRNA-1 |
| chr3_2 | CDS | 87725429 | 87725566 | 87725429 | ID=Msa0434720-mRNA-1:cds;Parent=Msa0434720-mRNA-1 |
| chr3_2 | CDS | 87725208 | 87725329 | 87725208 | ID=Msa0434720-mRNA-1:cds;Parent=Msa0434720-mRNA-1 |
| chr3_2 | CDS | 87723987 | 87724125 | 87723987 | ID=Msa0434720-mRNA-1:cds;Parent=Msa0434720-mRNA-1 |
| chr3_2 | three_prime_UTR | 87723670 | 87723986 | 87723670 | ID=Msa0434720-mRNA-1:three_prime_utr;Parent=Msa0434720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
