AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478570


Find 371 sgRNAs with CRISPR-Local

Find 1409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr3_3 gene 83347508 83367816 83347508 ID=Msa0478570;Name=Msa0478570
chr3_3 mRNA 83347508 83367816 83347508 ID=Msa0478570-mRNA-1;Parent=Msa0478570;Name=Msa0478570-mRNA-1;_AED=0.21;_eAED=0.21;_QI=273|0.8|0.80|0.96|1|1|26|564|1342
chr3_3 exon 83347508 83347983 83347508 ID=Msa0478570-mRNA-1:exon:23366;Parent=Msa0478570-mRNA-1
chr3_3 exon 83348095 83348254 83348095 ID=Msa0478570-mRNA-1:exon:23367;Parent=Msa0478570-mRNA-1
chr3_3 exon 83348740 83348832 83348740 ID=Msa0478570-mRNA-1:exon:23368;Parent=Msa0478570-mRNA-1
chr3_3 exon 83349207 83349309 83349207 ID=Msa0478570-mRNA-1:exon:23369;Parent=Msa0478570-mRNA-1
chr3_3 exon 83350702 83350864 83350702 ID=Msa0478570-mRNA-1:exon:23370;Parent=Msa0478570-mRNA-1
chr3_3 exon 83352939 83353087 83352939 ID=Msa0478570-mRNA-1:exon:23371;Parent=Msa0478570-mRNA-1
chr3_3 exon 83354231 83354490 83354231 ID=Msa0478570-mRNA-1:exon:23372;Parent=Msa0478570-mRNA-1
chr3_3 exon 83354854 83354913 83354854 ID=Msa0478570-mRNA-1:exon:23373;Parent=Msa0478570-mRNA-1
chr3_3 exon 83355084 83355698 83355084 ID=Msa0478570-mRNA-1:exon:23374;Parent=Msa0478570-mRNA-1
chr3_3 exon 83355829 83356452 83355829 ID=Msa0478570-mRNA-1:exon:23375;Parent=Msa0478570-mRNA-1
chr3_3 exon 83358160 83358225 83358160 ID=Msa0478570-mRNA-1:exon:23376;Parent=Msa0478570-mRNA-1
chr3_3 exon 83359359 83359472 83359359 ID=Msa0478570-mRNA-1:exon:23377;Parent=Msa0478570-mRNA-1
chr3_3 exon 83359574 83359819 83359574 ID=Msa0478570-mRNA-1:exon:23378;Parent=Msa0478570-mRNA-1
chr3_3 exon 83360173 83360220 83360173 ID=Msa0478570-mRNA-1:exon:23379;Parent=Msa0478570-mRNA-1
chr3_3 exon 83360308 83360442 83360308 ID=Msa0478570-mRNA-1:exon:23380;Parent=Msa0478570-mRNA-1
chr3_3 exon 83362160 83362312 83362160 ID=Msa0478570-mRNA-1:exon:23381;Parent=Msa0478570-mRNA-1
chr3_3 exon 83362408 83362470 83362408 ID=Msa0478570-mRNA-1:exon:23382;Parent=Msa0478570-mRNA-1
chr3_3 exon 83363010 83363120 83363010 ID=Msa0478570-mRNA-1:exon:23383;Parent=Msa0478570-mRNA-1
chr3_3 exon 83363212 83363295 83363212 ID=Msa0478570-mRNA-1:exon:23384;Parent=Msa0478570-mRNA-1
chr3_3 exon 83363384 83363431 83363384 ID=Msa0478570-mRNA-1:exon:23385;Parent=Msa0478570-mRNA-1
chr3_3 exon 83364244 83364318 83364244 ID=Msa0478570-mRNA-1:exon:23386;Parent=Msa0478570-mRNA-1
chr3_3 exon 83364598 83364714 83364598 ID=Msa0478570-mRNA-1:exon:23387;Parent=Msa0478570-mRNA-1
chr3_3 exon 83365520 83365600 83365520 ID=Msa0478570-mRNA-1:exon:23388;Parent=Msa0478570-mRNA-1
chr3_3 exon 83365685 83365756 83365685 ID=Msa0478570-mRNA-1:exon:23389;Parent=Msa0478570-mRNA-1
chr3_3 exon 83366152 83366222 83366152 ID=Msa0478570-mRNA-1:exon:23390;Parent=Msa0478570-mRNA-1
chr3_3 exon 83367138 83367816 83367138 ID=Msa0478570-mRNA-1:exon:23391;Parent=Msa0478570-mRNA-1
chr3_3 five_prime_UTR 83347508 83347780 83347508 ID=Msa0478570-mRNA-1:five_prime_utr;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83347781 83347983 83347781 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83348095 83348254 83348095 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83348740 83348832 83348740 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83349207 83349309 83349207 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83350702 83350864 83350702 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83352939 83353087 83352939 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83354231 83354490 83354231 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83354854 83354913 83354854 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83355084 83355698 83355084 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83355829 83356452 83355829 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83358160 83358225 83358160 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83359359 83359472 83359359 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83359574 83359819 83359574 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83360173 83360220 83360173 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83360308 83360442 83360308 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83362160 83362312 83362160 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83362408 83362470 83362408 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83363010 83363120 83363010 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83363212 83363295 83363212 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83363384 83363431 83363384 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83364244 83364318 83364244 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83364598 83364714 83364598 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83365520 83365600 83365520 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83365685 83365756 83365685 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83366152 83366222 83366152 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 CDS 83367138 83367252 83367138 ID=Msa0478570-mRNA-1:cds;Parent=Msa0478570-mRNA-1
chr3_3 three_prime_UTR 83367253 83367816 83367253 ID=Msa0478570-mRNA-1:three_prime_utr;Parent=Msa0478570-mRNA-1
Gene Sequence

>Msa0478570

ATGGCCGCACCCACCAAAGACCAAGTCCTCTCTCTCCTCGCCGCCGCCAACAACCACGGCGACATCTCCGTCAAAACCACTTCTCTCAAACAAGCCAAAGACCTCCTTCTCTCCATCGACCCCTCCCTCGCTGCAGACCTTTTCCCTTATCTCCTCGAACTTCAGTCTTCTCATCAATCTCTCGTTCGCAAATTGCTCATTCAAATAATTGAAGAGATTGGTTTTAGAGCCGTTGAACATTCTCCTACATTGATTTCTTCATTATTAACGTTTTTAAGAGACACTGATGTAACTGTCGTAAAGCAGTCTATTATTAGTGGAACAAACATCTTCTGTGCTTGTTTTGAGGAGTTGATTTTGCAGTTTCAACAATGTGGTAATGTTGAGAGGTGGTTAGAAGAGATTTGGATGTGGATGTTTAAGTTCAAGGAGGCTGTTTTTGAGATTGCTCTCGAGGGTGGTTCTGTTGGAATAAAGTTGCTGGCACTGAAATTCTTGGAGATTTTTGTATTACTTTTTACATCTGACATCAGTGATTCTGAGAAATCAGCTACTGAAGGAGTCAGGCAAGCTGTTAATATCTCATGGTTGGTGGGTTCTCACCCTGTTCTTGATCCAATGGTGCTTATGACAGAGGCAAATAGGACAATTGGCATTTTATTAAAATTGTTGCAGTGTGCTGGCAATACCCCCGGTTGCTTGTCAATTACTGTTGTGAATTGTGTAAGGAAATCAATTGTGATTGATAAGGCTTTGCTTCTGAAGTTTGGAAGCATCGTTTTGTCATTTCCACAAGGCACTGTCTGGGTTATTTCTTTGATATTGTCCATAAGCTGGCCTTTTCAGCTTATACCAGCAACAAACATATCATGTGCTGCTTCTCTTTTCTTGCCTCCACTTTCTGTCATGAAATATCATTTCAAGTCTAACCCTGTAATATATATATGTTTTGACAGTTTAGCAGCCATTGCAAGGAAAAGGTCACAACATTATGATACTATCCTTTCAGCATTACTTGATTTTGATCCAAATGTTCAAACAGTGAAAGGATGTCATGTTCCCAGTATTCAGTACTCTTTAAGAACAGCTTTTTTAGGTTTTCTAAGATGCACTTATTCTCCAATAATAGAGTCAAGAGAAAGACTGATAAGGAGCCTGCGAGCCATGAATGCAGGCGATGCAGCTGATCAGGATGATCAACCATCAACTCAGTTGCCCGTTTCAGGGGAATCATCTAGGAAAAGACCTGTTCCTCATGATAATGAACAATTGGCCAATGGTCATGAGGCGATTGCTAAGCGGATTCGTTCTGGTCCTGACTCTGACTTTACTTCACCTGCTCAAGCTAATGATTCTGGGAGGGATCATAGCTCCGTTAACGGAGTGTCACCTAATGTTCCTGTTTTGGAAAGTGAACTAACTGCTGTGGAGCAAATGATTGCCGTTATTGGTGCTTTGATTGCTGAAGGAGAAAGAGGCGCCAAATCTCTTGAAATACTTATATCACAGATTCATCCTGATCTATTGGCTGATATTGTCATAGCTAATATGAAGCACCTGCCTAAGGCACCCCCACCACTAGCAAGGCTTGAGAGTCCATCAGTAACTCGACCAGTAGGTTCCCTCGTCAGTCAATCGCAGGTTATAACAACATCTGCTTCAATGAGTTCTGTCCAATCCTTGACTGTTTCTGCCCAAGGACAAGTCCCTTCAACTACAGCCATTTCTACTGCCACTTCTTCATCACCATCCGACACATCTAATTTCAGTAACCTTCCTGCTGATTCTAAACGCGATCCACGCCGGGACCCTCGTCGCCTTGATCCGCGGCGTGGAGCGATAACTCCTGGAGGAGCAGCTGTCTCAGTTACAGACGATACTGCGGCCACACATTTAGAATCTGAGGATCCCGTGTCTTTAATTAAACCTGCCTCACATCATGTTGCAAGCACCGATGACGATATCCAATCAAATTTAACAATCAAAATAGAAAATGATGACATGATCTCCGAAGGCCCTCCAGTTCCAGGACCTGACCGGGTTAGTCCCAAAACAGAGGCTCTTGAAGGGCCTGGAGATCACCAGATTATGGAAGCAAATGCTTCTATGGATCCCGGGGTCTATTCCACTGATTCAAAAGATGAGAATCTGAGTACAGCAAATCTTTTGGACGATAATGAAACAAATGGGATAGATTCATCATCTATTTTAGAGTTTGATCAGTTTTCTGTTGACGTACAAGTGTCACCCACATCAGAAGATACCTGTCTGGAGTTGCCACAGCTTCCACCTTACATCCAACTATCCCAAGAACAGGAAAGTAAGGTGAAACACATGGCTATTAGCCACATAATAGAGTCATACAATCATTTGCAAGGGGCTGATTGTCAACAGTTTTGCATGCCACTACTAGCTAGACTTGTAGCTCAGATTGATAACGATAATGTGATCATTACGATGCTGCAAAAACACATTCTGGAAGACCACTGGCGAAAGGGGCATGAACTTGTTCTGCATGTCCTGTACCATCTTCACTCCTTGATGATATTGGATTCAGCAGGAAACACTTCATTTTCTGCTGTTTTATATGATAACTTTCTCTTGGGAGTGGCCAAAACTGTATTGGATTCTTTTCCAGCTTCAGACAAGTCTTTTAGCAAACTTCTTGGTGAAGTTCCATTTCTGCCTGAATCTGCCTTGAAGATTTTGGATGATCTATGCTATTCTGATGTTGTTGATCACGATGGAAAAATTATCCGCGACATTGAGCGTGTGACTCAAGGCCTTGGTGCTATCTGGAGTTTAATTTTGGGTCGTCCACAAAACCGACAAGGCTGCTTAGGAATAGCATTGAAGTGTGCTGTTCATCCACAGGACGAGATTCGAGCTAAAGCTATTCGGCTGGTGACAAACAAGCTCTTTCAGCTTAGTTACATAGCTGAAGATGTTGAGAAATTTGCGACAAAAATGCTTCTCTCTGCAGTAGATCACGAAGTTTCAAATGCAGCGCAATCTGGACCTACTGAACAAAGAACAGAGGTCGAAAGTCTTGAAATAAGTGGTACTTCACAGGTTAAAGAGCCCGAAAATGACCCTGCTGGAGTTGCTAAACCATCAAGTCAAAGTGTTTCATCTATATCGTTTTCTGAGGCACAACGCCTCATTTCTTTATTTTTTGCTCTATGTACAAAGAAACCCAGTCTTCTACAGATTGTATTTGATGTCTATGGGCAAGCCTCAAGAACTGTAAAGCAGGCTTTTCATCGCCACATTCCTAATCTTGTGAGGGCCCTAGGGCAATCTTATTCTGAATTGCTCCATATCATATCTGATCCACCAAAAGGAAGTGAAAATCTTCTGACACTGGTGCTGCAAATATTGACTCAAGACACAACACCATCTTCTGATTTGATATCTACCGTTAAACATTTATATGAAACCAAGTTTAGAGATGTTACAATTCTTGTTCCATTATTGTCATCGCTCTCCAAAACGGAGGTTTTACCAATTTTCCCCCGACTTGTGGACCTTCCATTGGAAAAGTTTCAAAGGGCACTTGCCCACATACTACAGGGTTCAGCTCATACAGGTCCAGCTTTAACACCTGTAGAAGTTTTGGTTGCAATCCATGGAATTGTTCCTGAGAAAGATGGCCTTGCACTTAAGAAGGCACGTCTTCTATCATTTTATATAACAGATGCTTGCTCAGCTTGTTTTGAACAACGTACAGTGTTCACTCAGCAGGTTTTGGCCAAGGCATTGAATCAGATGGTTGATCAAACACCGCTGCCTCTGCTTTTCATGAGAACAATTATTCAGGCCGTTGATGCTTTTCCTGCACTGGTTGATTTTGTCATGGAGATACTCTCAAAACTTGTGACCAAACAGGTATGCTTACTTAATCTTGAATTCAGATCAACTTTAGTTGTTCTCGGCCTTGCAAATGAAACACACGTGCAGCAACATTTACCGACATCATTGCACCATTCTGAGACAAGTACTTCAGTTAGTGGGGCAACTCTGACATGA

Protein sequence

>Msa0478570

MAAPTKDQVLSLLAAANNHGDISVKTTSLKQAKDLLLSIDPSLAADLFPYLLELQSSHQSLVRKLLIQIIEEIGFRAVEHSPTLISSLLTFLRDTDVTVVKQSIISGTNIFCACFEELILQFQQCGNVERWLEEIWMWMFKFKEAVFEIALEGGSVGIKLLALKFLEIFVLLFTSDISDSEKSATEGVRQAVNISWLVGSHPVLDPMVLMTEANRTIGILLKLLQCAGNTPGCLSITVVNCVRKSIVIDKALLLKFGSIVLSFPQGTVWVISLILSISWPFQLIPATNISCAASLFLPPLSVMKYHFKSNPVIYICFDSLAAIARKRSQHYDTILSALLDFDPNVQTVKGCHVPSIQYSLRTAFLGFLRCTYSPIIESRERLIRSLRAMNAGDAADQDDQPSTQLPVSGESSRKRPVPHDNEQLANGHEAIAKRIRSGPDSDFTSPAQANDSGRDHSSVNGVSPNVPVLESELTAVEQMIAVIGALIAEGERGAKSLEILISQIHPDLLADIVIANMKHLPKAPPPLARLESPSVTRPVGSLVSQSQVITTSASMSSVQSLTVSAQGQVPSTTAISTATSSSPSDTSNFSNLPADSKRDPRRDPRRLDPRRGAITPGGAAVSVTDDTAATHLESEDPVSLIKPASHHVASTDDDIQSNLTIKIENDDMISEGPPVPGPDRVSPKTEALEGPGDHQIMEANASMDPGVYSTDSKDENLSTANLLDDNETNGIDSSSILEFDQFSVDVQVSPTSEDTCLELPQLPPYIQLSQEQESKVKHMAISHIIESYNHLQGADCQQFCMPLLARLVAQIDNDNVIITMLQKHILEDHWRKGHELVLHVLYHLHSLMILDSAGNTSFSAVLYDNFLLGVAKTVLDSFPASDKSFSKLLGEVPFLPESALKILDDLCYSDVVDHDGKIIRDIERVTQGLGAIWSLILGRPQNRQGCLGIALKCAVHPQDEIRAKAIRLVTNKLFQLSYIAEDVEKFATKMLLSAVDHEVSNAAQSGPTEQRTEVESLEISGTSQVKEPENDPAGVAKPSSQSVSSISFSEAQRLISLFFALCTKKPSLLQIVFDVYGQASRTVKQAFHRHIPNLVRALGQSYSELLHIISDPPKGSENLLTLVLQILTQDTTPSSDLISTVKHLYETKFRDVTILVPLLSSLSKTEVLPIFPRLVDLPLEKFQRALAHILQGSAHTGPALTPVEVLVAIHGIVPEKDGLALKKARLLSFYITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTIIQAVDAFPALVDFVMEILSKLVTKQVCLLNLEFRSTLVVLGLANETHVQQHLPTSLHHSETSTSVSGATLT*