Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478960 | XP_003629971.1 | 96.000 | 75 | 3 | 0 | 1 | 75 | 179 | 253 | 7.82e-39 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478960 | sp|Q8RXJ0|NUF2_ARATH | 52.000 | 75 | 36 | 0 | 1 | 75 | 174 | 248 | 2.41e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478960 | G7L8V7 | 96.000 | 75 | 3 | 0 | 1 | 75 | 179 | 253 | 3.74e-39 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0478920 | Msa0478960 | 0.971951 | 5.593929e-134 | -8.615850e-47 |
| Msa0478960 | Msa0479010 | 0.927420 | 1.205210e-91 | -8.615850e-47 |
| Msa0309020 | Msa0478960 | 0.818628 | 1.774973e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478960 | MtrunA17_Chr8g0380721 | 96.000 | 75 | 3 | 0 | 1 | 75 | 179 | 253 | 7.19e-43 | 145 |
| Msa0478960 | MtrunA17_Chr4g0025011 | 77.632 | 76 | 17 | 0 | 1 | 76 | 77 | 152 | 4.45e-36 | 120 |
| Msa0478960 | MtrunA17_Chr8g0380701 | 80.000 | 75 | 15 | 0 | 1 | 75 | 152 | 226 | 2.24e-35 | 122 |
| Msa0478960 | MtrunA17_Chr8g0382711 | 82.927 | 41 | 7 | 0 | 69 | 109 | 104 | 144 | 8.25e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478960 | AT1G61000.1 | 52.000 | 75 | 36 | 0 | 1 | 75 | 174 | 248 | 2.45e-21 | 87.8 |
| Msa0478960 | AT4G39710.2 | 75.610 | 41 | 10 | 0 | 69 | 109 | 108 | 148 | 7.23e-17 | 72.4 |
| Msa0478960 | AT4G39710.1 | 75.610 | 41 | 10 | 0 | 69 | 109 | 108 | 148 | 1.68e-16 | 72.4 |
| Msa0478960 | AT4G39710.3 | 75.610 | 41 | 10 | 0 | 69 | 109 | 108 | 148 | 1.68e-16 | 72.4 |
Find 71 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTCTTAATCAGCCATTT+TGG | 0.249434 | 3_3:+83810583 | None:intergenic |
| ATGACATCTGTTTATTGTTC+AGG | 0.250147 | 3_3:+83809876 | None:intergenic |
| TGCATTTGCTCAATTGCTTT+GGG | 0.264099 | 3_3:-83811114 | Msa0478960:five_prime_UTR |
| GGCAAATTGTGCAGATAAAA+TGG | 0.274667 | 3_3:-83810076 | Msa0478960:five_prime_UTR |
| CTGCATTTGCTCAATTGCTT+TGG | 0.275397 | 3_3:-83811115 | Msa0478960:five_prime_UTR |
| GTGCTGGAAAATTCTTCTTT+TGG | 0.284743 | 3_3:+83810793 | None:intergenic |
| AATGATACCTGTACTTTATC+AGG | 0.298393 | 3_3:+83809420 | None:intergenic |
| CTGTAGATGATTTAAATGTT+TGG | 0.301649 | 3_3:-83810675 | Msa0478960:five_prime_UTR |
| ACACCAATACGCATAGTTAA+AGG | 0.322478 | 3_3:+83807072 | None:intergenic |
| AAGGGAAATGCCTTCTGTTC+AGG | 0.323153 | 3_3:-83809942 | Msa0478960:exon |
| AATGACTATCATTCTCTTTG+TGG | 0.360858 | 3_3:+83810924 | None:intergenic |
| CTATACTTGCGGCGCTGAAT+AGG | 0.365832 | 3_3:+83811063 | None:intergenic |
| AACCTTAGTATAACTGTTGT+TGG | 0.383313 | 3_3:-83810833 | Msa0478960:five_prime_UTR |
| AATGATAGTCATTGAGGAAA+TGG | 0.392182 | 3_3:-83810914 | Msa0478960:five_prime_UTR |
| AATCTATTGGTGCTTCTCAT+TGG | 0.394864 | 3_3:-83811027 | Msa0478960:five_prime_UTR |
| TGGATATGCTCGGACCAAAA+TGG | 0.396223 | 3_3:-83810597 | Msa0478960:five_prime_UTR |
| TGTTTGGAACAATATATCTA+AGG | 0.397747 | 3_3:-83810659 | Msa0478960:five_prime_UTR |
| AAAACTGTTGGCATTGCAAT+AGG | 0.398141 | 3_3:+83810997 | None:intergenic |
| GACTGTGGAAATGGATGATA+AGG | 0.411995 | 3_3:-83809822 | Msa0478960:intron |
| TTCTGGTGCTGAATATAAAC+TGG | 0.412690 | 3_3:-83809493 | Msa0478960:CDS |
| CTATTCAGCGCCGCAAGTAT+AGG | 0.427697 | 3_3:-83811062 | Msa0478960:five_prime_UTR |
| TTGTCAGTTACGATGGCTAT+TGG | 0.429901 | 3_3:-83810976 | Msa0478960:five_prime_UTR |
| CTCCACAGAGCATTTGATAA+AGG | 0.432915 | 3_3:+83806899 | None:intergenic |
| GAAGGAGAGGACTGTGGAAA+TGG | 0.440042 | 3_3:-83809831 | Msa0478960:CDS |
| CGATTCTGCATGTTAAAGTC+TGG | 0.442759 | 3_3:+83810546 | None:intergenic |
| GATATTGTACAATTCTTGAA+AGG | 0.450055 | 3_3:-83809961 | Msa0478960:five_prime_UTR |
| GGCTGCAATGGTGGCTGCAA+TGG | 0.454503 | 3_3:-83810893 | Msa0478960:five_prime_UTR |
| AAGTACTATAAAGAAATTGA+AGG | 0.472617 | 3_3:-83809849 | Msa0478960:CDS |
| AAATGGCTGATTAAGAGTTA+AGG | 0.474751 | 3_3:-83810580 | Msa0478960:five_prime_UTR |
| CTATTGGTGCTTCTCATTGG+AGG | 0.489832 | 3_3:-83811024 | Msa0478960:five_prime_UTR |
| ATATTGTACAATTCTTGAAA+GGG | 0.490218 | 3_3:-83809960 | Msa0478960:five_prime_UTR |
| AACAACAGTTATACTAAGGT+TGG | 0.501460 | 3_3:+83810835 | None:intergenic |
| AGGCCTTTAACTATGCGTAT+TGG | 0.506428 | 3_3:-83807075 | Msa0478960:CDS |
| TAGAAAAGAGCAAAGAGTGC+TGG | 0.507946 | 3_3:+83810777 | None:intergenic |
| CTCCAACAACAGTTATACTA+AGG | 0.511684 | 3_3:+83810831 | None:intergenic |
| TATTGGTGCTTCTCATTGGA+GGG | 0.514746 | 3_3:-83811023 | Msa0478960:five_prime_UTR |
| TTAACTATGCGTATTGGTGT+TGG | 0.521341 | 3_3:-83807069 | Msa0478960:CDS |
| AAAGAGAATGATAGTCATTG+AGG | 0.526397 | 3_3:-83810920 | Msa0478960:five_prime_UTR |
| ATAGTAGTTATAAACGTGCT+AGG | 0.527374 | 3_3:-83807095 | Msa0478960:CDS |
| GATCATGTGTTGACAGCCAT+CGG | 0.527698 | 3_3:-83811144 | Msa0478960:five_prime_UTR |
| AATGCCTTCTGTTCAGGAGG+TGG | 0.532743 | 3_3:-83809936 | Msa0478960:CDS |
| GTACAAAATGTTCAAGAGCA+TGG | 0.533679 | 3_3:-83809471 | Msa0478960:CDS |
| GAGTGGAATTGACAATCTAT+TGG | 0.533730 | 3_3:-83811040 | Msa0478960:five_prime_UTR |
| ACTATCACAATTCAGACATC+GGG | 0.534239 | 3_3:+83810741 | None:intergenic |
| TTATTCCGTTTGGATATGCT+CGG | 0.539101 | 3_3:-83810607 | Msa0478960:five_prime_UTR |
| CAATTCCACTCCTATACTTG+CGG | 0.549747 | 3_3:+83811052 | None:intergenic |
| GCATCCACCTCCTGAACAGA+AGG | 0.551705 | 3_3:+83809932 | None:intergenic |
| AATTGTACAATATCAACTCC+AGG | 0.560612 | 3_3:+83809970 | None:intergenic |
| TTGGTCCGAGCATATCCAAA+CGG | 0.569946 | 3_3:+83810602 | None:intergenic |
| CGATGGCTATTGGTTCACAT+AGG | 0.572428 | 3_3:-83810966 | Msa0478960:five_prime_UTR |
| ATCGTAACTGACAAAACTGT+TGG | 0.576198 | 3_3:+83810985 | None:intergenic |
| TACTATCACAATTCAGACAT+CGG | 0.579861 | 3_3:+83810740 | None:intergenic |
| TTGTCACACTCTGAATCCGC+AGG | 0.583371 | 3_3:-83810860 | Msa0478960:five_prime_UTR |
| ACTATCAAATACTATTCCAT+CGG | 0.594477 | 3_3:+83807113 | None:intergenic |
| CTATAAAGAAATTGAAGGAG+AGG | 0.594531 | 3_3:-83809844 | Msa0478960:CDS |
| GAAATTGAAGGAGAGGACTG+TGG | 0.597307 | 3_3:-83809837 | Msa0478960:CDS |
| TATACTAAGGTTGGATCCTG+CGG | 0.606504 | 3_3:+83810844 | None:intergenic |
| TGAGGAAATGGCTGCAATGG+TGG | 0.607777 | 3_3:-83810902 | Msa0478960:five_prime_UTR |
| CATTGAGGAAATGGCTGCAA+TGG | 0.609889 | 3_3:-83810905 | Msa0478960:five_prime_UTR |
| TCAATCGCCTGATAAAGTAC+AGG | 0.611191 | 3_3:-83809427 | Msa0478960:intron |
| TTCCTTTATCAAATGCTCTG+TGG | 0.615221 | 3_3:-83806901 | Msa0478960:CDS |
| CAGAGTTGTACAGACCAGAA+TGG | 0.623697 | 3_3:+83810028 | None:intergenic |
| TATGCGTATTGGTGTTGGCA+AGG | 0.624457 | 3_3:-83807064 | Msa0478960:intron |
| TCAACACATGATCAAAGCCA+TGG | 0.635234 | 3_3:+83811154 | None:intergenic |
| CAGCGCCGCAAGTATAGGAG+TGG | 0.639208 | 3_3:-83811057 | Msa0478960:five_prime_UTR |
| GGAAATGCCTTCTGTTCAGG+AGG | 0.641002 | 3_3:-83809939 | Msa0478960:exon |
| TAACATGCAGAATCGACAAG+AGG | 0.642308 | 3_3:-83810538 | Msa0478960:intron |
| TCACATAGGTTGTCTCAGCA+AGG | 0.643329 | 3_3:-83810952 | Msa0478960:five_prime_UTR |
| GCAAATGCAGAAGTTACCGA+TGG | 0.680742 | 3_3:+83811128 | None:intergenic |
| TATACAGCTAGATTCGCCGA+TGG | 0.689447 | 3_3:-83807129 | Msa0478960:CDS |
| TTCTGGTCTGTACAACTCTG+AGG | 0.704995 | 3_3:-83810025 | Msa0478960:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTATGTAATATGA+AGG | + | chr3_3:83809139-83809158 | None:intergenic | 10.0% |
| !! | TTTATTGTATTAAAAAATTG+TGG | - | chr3_3:83809153-83809172 | Msa0478960:intron | 10.0% |
| !! | ATGTTTATGTGAATAATTAA+TGG | - | chr3_3:83808506-83808525 | Msa0478960:intron | 15.0% |
| !! | ATATATATTAATTCATGTGT+TGG | - | chr3_3:83808608-83808627 | Msa0478960:intron | 15.0% |
| !!! | ATATTGTAAATGTGTTTTAT+TGG | - | chr3_3:83808906-83808925 | Msa0478960:intron | 15.0% |
| !!! | GTATAATACAAAAATTTTAG+AGG | - | chr3_3:83809822-83809841 | Msa0478960:intron | 15.0% |
| !! | ATAATTAAGATGAAACTAAT+TGG | + | chr3_3:83810508-83810527 | None:intergenic | 15.0% |
| !!! | TCGTTTTCTTTTAATTATTT+AGG | - | chr3_3:83810825-83810844 | Msa0478960:five_prime_UTR | 15.0% |
| !!! | CGATACTATTTATTTTTTTA+TGG | - | chr3_3:83810918-83810937 | Msa0478960:five_prime_UTR | 15.0% |
| !!! | ATCCAACTTTTTGATATATT+AGG | + | chr3_3:83806931-83806950 | None:intergenic | 20.0% |
| !! | GGTAAATGAATATTACAATT+TGG | + | chr3_3:83807832-83807851 | None:intergenic | 20.0% |
| !!! | ATTAATTGCATATTTGAAGT+CGG | - | chr3_3:83807866-83807885 | Msa0478960:intron | 20.0% |
| !! | ATCAAATTTCAACATCAATT+TGG | + | chr3_3:83807900-83807919 | None:intergenic | 20.0% |
| !! | AAAAGAAATCATTAGTATAG+GGG | + | chr3_3:83808092-83808111 | None:intergenic | 20.0% |
| !! | CAAAAGAAATCATTAGTATA+GGG | + | chr3_3:83808093-83808112 | None:intergenic | 20.0% |
| !! | TCAAAAGAAATCATTAGTAT+AGG | + | chr3_3:83808094-83808113 | None:intergenic | 20.0% |
| !!! | AATGATTTCTTTTGAATTGT+AGG | - | chr3_3:83808099-83808118 | Msa0478960:intron | 20.0% |
| !!! | ATGATTTCTTTTGAATTGTA+GGG | - | chr3_3:83808100-83808119 | Msa0478960:intron | 20.0% |
| !! | ATATTGTACAATTCTTGAAA+GGG | - | chr3_3:83808237-83808256 | Msa0478960:intron | 20.0% |
| !! | AAGTACTATAAAGAAATTGA+AGG | - | chr3_3:83808348-83808367 | Msa0478960:intron | 20.0% |
| !! | TTTATGTGAATAATTAATGG+TGG | - | chr3_3:83808509-83808528 | Msa0478960:intron | 20.0% |
| !! | TAGTTAAGTAGTTATTTAAG+AGG | - | chr3_3:83809295-83809314 | Msa0478960:intron | 20.0% |
| !!! | TATTTAAGAGGTTAGTTAAT+TGG | - | chr3_3:83809307-83809326 | Msa0478960:intron | 20.0% |
| !!! | TTAGTAGATTTTTCATGAAA+AGG | - | chr3_3:83809341-83809360 | Msa0478960:intron | 20.0% |
| !! | TAAAAAGATTATCAACAGTT+AGG | - | chr3_3:83809788-83809807 | Msa0478960:intron | 20.0% |
| !!! | ATAGTTCTAAATTGTGATTA+CGG | + | chr3_3:83809930-83809949 | None:intergenic | 20.0% |
| !!! | CATTGAGTTCATTTTATTTA+TGG | - | chr3_3:83810028-83810047 | Msa0478960:five_prime_UTR | 20.0% |
| !! | AATAAGCAGGATTATAATTT+GGG | + | chr3_3:83810074-83810093 | None:intergenic | 20.0% |
| !! | AAATAAGCAGGATTATAATT+TGG | + | chr3_3:83810075-83810094 | None:intergenic | 20.0% |
| !!! | TAATTATTATGATGTTTTCC+TGG | - | chr3_3:83810521-83810540 | Msa0478960:intron | 20.0% |
| !!! | TTTTATTTCTTGCTACATTT+TGG | - | chr3_3:83810684-83810703 | Msa0478960:five_prime_UTR | 20.0% |
| ! | TGCCTAATATATCAAAAAGT+TGG | - | chr3_3:83806926-83806945 | Msa0478960:intron | 25.0% |
| ! | CTGTAGATGATTTAAATGTT+TGG | - | chr3_3:83807522-83807541 | Msa0478960:intron | 25.0% |
| !! | TGTTTGGAACAATATATCTA+AGG | - | chr3_3:83807538-83807557 | Msa0478960:intron | 25.0% |
| ! | GTTATAGTAGTAATTCTCTT+TGG | - | chr3_3:83807687-83807706 | Msa0478960:intron | 25.0% |
| ! | TTGTACAAAAGTTGCTAAAA+AGG | - | chr3_3:83807721-83807740 | Msa0478960:intron | 25.0% |
| ! | CTAACTATTCATTATAGTAG+AGG | - | chr3_3:83807752-83807771 | Msa0478960:intron | 25.0% |
| ! | AATTTCAACATCAATTTGGA+TGG | + | chr3_3:83807896-83807915 | None:intergenic | 25.0% |
| ! | TCATTTCACGAAAAATCAAT+AGG | - | chr3_3:83807942-83807961 | Msa0478960:intron | 25.0% |
| ! | TCTTACTAACGACTTAAAAA+AGG | + | chr3_3:83807999-83808018 | None:intergenic | 25.0% |
| ! | GATATTGTACAATTCTTGAA+AGG | - | chr3_3:83808236-83808255 | Msa0478960:intron | 25.0% |
| ! | TAATCTTTACTTCTTGATGT+TGG | - | chr3_3:83808440-83808459 | Msa0478960:intron | 25.0% |
| ! | AATCTTTACTTCTTGATGTT+GGG | - | chr3_3:83808441-83808460 | Msa0478960:intron | 25.0% |
| !!! | TGAATAATTAATGGTGGATT+AGG | - | chr3_3:83808515-83808534 | Msa0478960:intron | 25.0% |
| ! | ATGAAGGACATAAATTATGT+TGG | + | chr3_3:83809123-83809142 | None:intergenic | 25.0% |
| !! | ATGAGCTATTCTTTTATGTT+GGG | + | chr3_3:83809220-83809239 | None:intergenic | 25.0% |
| !! | TATGAGCTATTCTTTTATGT+TGG | + | chr3_3:83809221-83809240 | None:intergenic | 25.0% |
| !! | AGGTTAGTTAATTGGTTAAT+GGG | - | chr3_3:83809315-83809334 | Msa0478960:intron | 25.0% |
| ! | ATTCAAACATGCGTTAAAAT+TGG | - | chr3_3:83809614-83809633 | Msa0478960:intron | 25.0% |
| ! | TTACTCTATGAATAAGTTTC+CGG | + | chr3_3:83809752-83809771 | None:intergenic | 25.0% |
| !! | GTAATCACAATTTAGAACTA+TGG | - | chr3_3:83809929-83809948 | Msa0478960:CDS | 25.0% |
| ! | ATCAAAATGAGAAAATAAGC+AGG | + | chr3_3:83810087-83810106 | None:intergenic | 25.0% |
| !!! | CATTTTGATACTTGATATCA+TGG | - | chr3_3:83810098-83810117 | Msa0478960:intron | 25.0% |
| !! | AAGTTAAAATGTCATTTGAG+TGG | - | chr3_3:83810274-83810293 | Msa0478960:intron | 25.0% |
| !! | AGTTAAAATGTCATTTGAGT+GGG | - | chr3_3:83810275-83810294 | Msa0478960:intron | 25.0% |
| ! | ATGAGAAAAAGGAATTTGAA+TGG | + | chr3_3:83810338-83810357 | None:intergenic | 25.0% |
| ! | CTATGAAGTAAAAGTTACTA+TGG | + | chr3_3:83810743-83810762 | None:intergenic | 25.0% |
| !! | CATAGTAACTTTTACTTCAT+AGG | - | chr3_3:83810741-83810760 | Msa0478960:five_prime_UTR | 25.0% |
| ! | GACAACAACGAAATTATATT+TGG | + | chr3_3:83810899-83810918 | None:intergenic | 25.0% |
| !!! | TTTTTTATGGTGTTTCCTTT+AGG | - | chr3_3:83810931-83810950 | Msa0478960:five_prime_UTR | 25.0% |
| ! | ACTATCAAATACTATTCCAT+CGG | + | chr3_3:83811087-83811106 | None:intergenic | 25.0% |
| ! | AATTCAAACTCCAAATTAAC+TGG | + | chr3_3:83811256-83811275 | None:intergenic | 25.0% |
| AATGACTATCATTCTCTTTG+TGG | + | chr3_3:83807276-83807295 | None:intergenic | 30.0% | |
| AAAGAGAATGATAGTCATTG+AGG | - | chr3_3:83807277-83807296 | Msa0478960:intron | 30.0% | |
| AATGATAGTCATTGAGGAAA+TGG | - | chr3_3:83807283-83807302 | Msa0478960:intron | 30.0% | |
| AACAACAGTTATACTAAGGT+TGG | + | chr3_3:83807365-83807384 | None:intergenic | 30.0% | |
| AACCTTAGTATAACTGTTGT+TGG | - | chr3_3:83807364-83807383 | Msa0478960:intron | 30.0% | |
| ! | TTGCTCTTTTCTATGAAGAT+TGG | - | chr3_3:83807430-83807449 | Msa0478960:intron | 30.0% |
| TACTATCACAATTCAGACAT+CGG | + | chr3_3:83807460-83807479 | None:intergenic | 30.0% | |
| ! | ATGCAGAATTTTATTCCGTT+TGG | - | chr3_3:83807580-83807599 | Msa0478960:intron | 30.0% |
| ! | TAACTCTTAATCAGCCATTT+TGG | + | chr3_3:83807617-83807636 | None:intergenic | 30.0% |
| AAATGGCTGATTAAGAGTTA+AGG | - | chr3_3:83807617-83807636 | Msa0478960:intron | 30.0% | |
| GTAGAGGTTAAAAAGATTTC+AGG | - | chr3_3:83807768-83807787 | Msa0478960:intron | 30.0% | |
| AATTAATCATGTTCAGTGGA+TGG | + | chr3_3:83807853-83807872 | None:intergenic | 30.0% | |
| ATGCAATTAATCATGTTCAG+TGG | + | chr3_3:83807857-83807876 | None:intergenic | 30.0% | |
| TGATTGATCAACAAAAAACC+TGG | - | chr3_3:83808209-83808228 | Msa0478960:intron | 30.0% | |
| AATTGTACAATATCAACTCC+AGG | + | chr3_3:83808230-83808249 | None:intergenic | 30.0% | |
| ATGACATCTGTTTATTGTTC+AGG | + | chr3_3:83808324-83808343 | None:intergenic | 30.0% | |
| CTATAAAGAAATTGAAGGAG+AGG | - | chr3_3:83808353-83808372 | Msa0478960:intron | 30.0% | |
| ATCTTTACTTCTTGATGTTG+GGG | - | chr3_3:83808442-83808461 | Msa0478960:intron | 30.0% | |
| ! | TTAATTCATGTGTTGGTACT+TGG | - | chr3_3:83808615-83808634 | Msa0478960:intron | 30.0% |
| AATGATACCTGTACTTTATC+AGG | + | chr3_3:83808780-83808799 | None:intergenic | 30.0% | |
| ! | TACAGGTATCATTTTCATGT+TGG | - | chr3_3:83808787-83808806 | Msa0478960:intron | 30.0% |
| CACATTTACAATATTCACAC+AGG | + | chr3_3:83808900-83808919 | None:intergenic | 30.0% | |
| ! | GAGGTTAGTTAATTGGTTAA+TGG | - | chr3_3:83809314-83809333 | Msa0478960:intron | 30.0% |
| AACAAATTCAGATGTGTCAA+AGG | - | chr3_3:83809368-83809387 | Msa0478960:intron | 30.0% | |
| TCGAGTTTAGTAAAATCACT+GGG | + | chr3_3:83809589-83809608 | None:intergenic | 30.0% | |
| ATCGAGTTTAGTAAAATCAC+TGG | + | chr3_3:83809590-83809609 | None:intergenic | 30.0% | |
| !! | AATTGTGATTTTAGCCGTAT+TGG | - | chr3_3:83809863-83809882 | Msa0478960:CDS | 30.0% |
| AATATGCAGATTGATGTATG+AGG | - | chr3_3:83809970-83809989 | Msa0478960:five_prime_UTR | 30.0% | |
| AATATTGTTAGACGAAGGTT+AGG | + | chr3_3:83810199-83810218 | None:intergenic | 30.0% | |
| ATTAGAGGTTCATAATCATG+TGG | - | chr3_3:83810216-83810235 | Msa0478960:intron | 30.0% | |
| ! | GTTAAAATGTCATTTGAGTG+GGG | - | chr3_3:83810276-83810295 | Msa0478960:intron | 30.0% |
| TAGATCACACTTTAATCTCT+CGG | + | chr3_3:83810312-83810331 | None:intergenic | 30.0% | |
| !! | TGTGTTATTTACACATGAGA+GGG | + | chr3_3:83810402-83810421 | None:intergenic | 30.0% |
| !! | ATGTGTTATTTACACATGAG+AGG | + | chr3_3:83810403-83810422 | None:intergenic | 30.0% |
| AATCATAATCCAGACATCAT+TGG | - | chr3_3:83810468-83810487 | Msa0478960:intron | 30.0% | |
| AAACTAATTGGAACCAATGA+AGG | + | chr3_3:83810496-83810515 | None:intergenic | 30.0% | |
| AAGTCTTGATTCATGAAAAG+AGG | + | chr3_3:83810566-83810585 | None:intergenic | 30.0% | |
| ! | TCTTTTCATGAATCAAGACT+TGG | - | chr3_3:83810565-83810584 | Msa0478960:five_prime_UTR | 30.0% |
| !!! | TTTGGTTTTGTTGTAGTGTT+AGG | - | chr3_3:83810702-83810721 | Msa0478960:five_prime_UTR | 30.0% |
| CAACGAAATTATATTTGGAC+TGG | + | chr3_3:83810894-83810913 | None:intergenic | 30.0% | |
| ATAGTAGTTATAAACGTGCT+AGG | - | chr3_3:83811102-83811121 | Msa0478960:five_prime_UTR | 30.0% | |
| ! | GAACTGCAATTTTATGTCCA+TGG | - | chr3_3:83807026-83807045 | Msa0478960:intron | 35.0% |
| TGCATTTGCTCAATTGCTTT+GGG | - | chr3_3:83807083-83807102 | Msa0478960:CDS | 35.0% | |
| GAGTGGAATTGACAATCTAT+TGG | - | chr3_3:83807157-83807176 | Msa0478960:intron | 35.0% | |
| ! | AATCTATTGGTGCTTCTCAT+TGG | - | chr3_3:83807170-83807189 | Msa0478960:intron | 35.0% |
| AAAACTGTTGGCATTGCAAT+AGG | + | chr3_3:83807203-83807222 | None:intergenic | 35.0% | |
| ATCGTAACTGACAAAACTGT+TGG | + | chr3_3:83807215-83807234 | None:intergenic | 35.0% | |
| !! | AACAGTTTTGTCAGTTACGA+TGG | - | chr3_3:83807214-83807233 | Msa0478960:intron | 35.0% |
| CTCCAACAACAGTTATACTA+AGG | + | chr3_3:83807369-83807388 | None:intergenic | 35.0% | |
| ! | GGAAAATTCTTCTTTTGGCA+AGG | + | chr3_3:83807402-83807421 | None:intergenic | 35.0% |
| ! | GTGCTGGAAAATTCTTCTTT+TGG | + | chr3_3:83807407-83807426 | None:intergenic | 35.0% |
| ACTATCACAATTCAGACATC+GGG | + | chr3_3:83807459-83807478 | None:intergenic | 35.0% | |
| TTATTCCGTTTGGATATGCT+CGG | - | chr3_3:83807590-83807609 | Msa0478960:intron | 35.0% | |
| AAGTCGTTAGTAAGACTCAT+CGG | - | chr3_3:83808004-83808023 | Msa0478960:intron | 35.0% | |
| GCACATTTGTCATGTTATTG+TGG | - | chr3_3:83808034-83808053 | Msa0478960:intron | 35.0% | |
| TAGGGGAAAAGTAAGAAAGA+AGG | + | chr3_3:83808075-83808094 | None:intergenic | 35.0% | |
| GGCAAATTGTGCAGATAAAA+TGG | - | chr3_3:83808121-83808140 | Msa0478960:intron | 35.0% | |
| ! | AAACGATGCTTTTACCATTC+TGG | - | chr3_3:83808155-83808174 | Msa0478960:intron | 35.0% |
| !!! | TGGGGTTTTTGAGTAGTATA+TGG | - | chr3_3:83808460-83808479 | Msa0478960:intron | 35.0% |
| ! | CAGAAATCTGAGGTAACAAA+AGG | + | chr3_3:83808689-83808708 | None:intergenic | 35.0% |
| ! | CTTTTGTTACCTCAGATTTC+TGG | - | chr3_3:83808687-83808706 | Msa0478960:intron | 35.0% |
| ! | TTCTGGTGCTGAATATAAAC+TGG | - | chr3_3:83808704-83808723 | Msa0478960:intron | 35.0% |
| GTACAAAATGTTCAAGAGCA+TGG | - | chr3_3:83808726-83808745 | Msa0478960:intron | 35.0% | |
| CAATATTCACACAGGAAGAT+GGG | + | chr3_3:83808892-83808911 | None:intergenic | 35.0% | |
| ACAATATTCACACAGGAAGA+TGG | + | chr3_3:83808893-83808912 | None:intergenic | 35.0% | |
| ACACCAAAGTCACAACATAA+TGG | - | chr3_3:83809249-83809268 | Msa0478960:intron | 35.0% | |
| !! | ACTCTGATTTTGGCACAATT+TGG | - | chr3_3:83809541-83809560 | Msa0478960:intron | 35.0% |
| ! | TAATTAGAGTACCTTTGTGC+AGG | - | chr3_3:83809652-83809671 | Msa0478960:intron | 35.0% |
| ACGGCAAAATACATCCAATA+CGG | + | chr3_3:83809880-83809899 | None:intergenic | 35.0% | |
| CATTGCGGACAATTATATCA+CGG | + | chr3_3:83809899-83809918 | None:intergenic | 35.0% | |
| !!! | ATCATCCTGTTTCTGCATTT+TGG | - | chr3_3:83810123-83810142 | Msa0478960:intron | 35.0% |
| CCTCTAATATTGTTAGACGA+AGG | + | chr3_3:83810204-83810223 | None:intergenic | 35.0% | |
| CCTTCGTCTAACAATATTAG+AGG | - | chr3_3:83810201-83810220 | Msa0478960:intron | 35.0% | |
| CCAAAATGCACGACTAAATT+GGG | + | chr3_3:83810439-83810458 | None:intergenic | 35.0% | |
| ! | CATATTTTGTTCATGAGACC+AGG | + | chr3_3:83810542-83810561 | None:intergenic | 35.0% |
| GTATAGTGTAACTTCTGCTT+TGG | - | chr3_3:83810653-83810672 | Msa0478960:five_prime_UTR | 35.0% | |
| ATAGGAGTAGATCTCTAATG+TGG | - | chr3_3:83810759-83810778 | Msa0478960:five_prime_UTR | 35.0% | |
| TTCCAGTCAAATCAATCGTT+GGG | + | chr3_3:83810801-83810820 | None:intergenic | 35.0% | |
| ACATCAATAAGCTCTCCTAA+AGG | + | chr3_3:83810949-83810968 | None:intergenic | 35.0% | |
| ACACCAATACGCATAGTTAA+AGG | + | chr3_3:83811128-83811147 | None:intergenic | 35.0% | |
| ! | TTAACTATGCGTATTGGTGT+TGG | - | chr3_3:83811128-83811147 | Msa0478960:five_prime_UTR | 35.0% |
| ! | GCTGCTAATTTTTGTGAACT+TGG | - | chr3_3:83811230-83811249 | Msa0478960:five_prime_UTR | 35.0% |
| GATAAAGGAACATCTGCAAA+AGG | + | chr3_3:83811286-83811305 | None:intergenic | 35.0% | |
| TTCCTTTATCAAATGCTCTG+TGG | - | chr3_3:83811296-83811315 | Msa0478960:five_prime_UTR | 35.0% | |
| TCAACACATGATCAAAGCCA+TGG | + | chr3_3:83807046-83807065 | None:intergenic | 40.0% | |
| CTGCATTTGCTCAATTGCTT+TGG | - | chr3_3:83807082-83807101 | Msa0478960:CDS | 40.0% | |
| CAATTCCACTCCTATACTTG+CGG | + | chr3_3:83807148-83807167 | None:intergenic | 40.0% | |
| ! | TATTGGTGCTTCTCATTGGA+GGG | - | chr3_3:83807174-83807193 | Msa0478960:intron | 40.0% |
| TTGTCAGTTACGATGGCTAT+TGG | - | chr3_3:83807221-83807240 | Msa0478960:intron | 40.0% | |
| TATACTAAGGTTGGATCCTG+CGG | + | chr3_3:83807356-83807375 | None:intergenic | 40.0% | |
| ! | TAGAAAAGAGCAAAGAGTGC+TGG | + | chr3_3:83807423-83807442 | None:intergenic | 40.0% |
| CGATTCTGCATGTTAAAGTC+TGG | + | chr3_3:83807654-83807673 | None:intergenic | 40.0% | |
| TAACATGCAGAATCGACAAG+AGG | - | chr3_3:83807659-83807678 | Msa0478960:intron | 40.0% | |
| GACTGTGGAAATGGATGATA+AGG | - | chr3_3:83808375-83808394 | Msa0478960:intron | 40.0% | |
| TGCACGTTACATAACTGACA+GGG | + | chr3_3:83808549-83808568 | None:intergenic | 40.0% | |
| TATTCAGCACCAGAAATCTG+AGG | + | chr3_3:83808699-83808718 | None:intergenic | 40.0% | |
| TCAATCGCCTGATAAAGTAC+AGG | - | chr3_3:83808770-83808789 | Msa0478960:intron | 40.0% | |
| TGGTAACCACATAGAGGTAA+GGG | + | chr3_3:83808936-83808955 | None:intergenic | 40.0% | |
| GTTAATGTTAGCATGTGCAC+CGG | + | chr3_3:83809003-83809022 | None:intergenic | 40.0% | |
| ! | TATGTTACAGCAAGCTTGCT+AGG | + | chr3_3:83809041-83809060 | None:intergenic | 40.0% |
| CAGCCATTATGTTGTGACTT+TGG | + | chr3_3:83809255-83809274 | None:intergenic | 40.0% | |
| CAACATAATGGCTGCTTGAT+AGG | - | chr3_3:83809261-83809280 | Msa0478960:intron | 40.0% | |
| AGTACCTTTGTGCAGGATTA+TGG | - | chr3_3:83809659-83809678 | Msa0478960:intron | 40.0% | |
| TCTTCCATAATCCTGCACAA+AGG | + | chr3_3:83809666-83809685 | None:intergenic | 40.0% | |
| TTTGTGCAGGATTATGGAAG+AGG | - | chr3_3:83809665-83809684 | Msa0478960:intron | 40.0% | |
| AGAGGAGAGCAACTCTAATT+TGG | - | chr3_3:83809683-83809702 | Msa0478960:intron | 40.0% | |
| AGGACAAACTTTGCTCTTAG+GGG | + | chr3_3:83809724-83809743 | None:intergenic | 40.0% | |
| CAGGACAAACTTTGCTCTTA+GGG | + | chr3_3:83809725-83809744 | None:intergenic | 40.0% | |
| ACAGGACAAACTTTGCTCTT+AGG | + | chr3_3:83809726-83809745 | None:intergenic | 40.0% | |
| TGAATAAGTTTCCGGCATAC+AGG | + | chr3_3:83809744-83809763 | None:intergenic | 40.0% | |
| !! | TAGAGGTCTCTAAAACTGCA+CGG | - | chr3_3:83809839-83809858 | Msa0478960:CDS | 40.0% |
| TAATTGTCCGCAATGTCACT+AGG | - | chr3_3:83809904-83809923 | Msa0478960:CDS | 40.0% | |
| ATCACACTTTAATCTCTCGG+AGG | + | chr3_3:83810309-83810328 | None:intergenic | 40.0% | |
| ! | GAGAGAAGCACATGAGAAAA+AGG | + | chr3_3:83810349-83810368 | None:intergenic | 40.0% |
| TGCTTCTCTCTCTTGATGAA+TGG | - | chr3_3:83810359-83810378 | Msa0478960:intron | 40.0% | |
| ! | CCCAATTTAGTCGTGCATTT+TGG | - | chr3_3:83810436-83810455 | Msa0478960:intron | 40.0% |
| GCCAAAATGCACGACTAAAT+TGG | + | chr3_3:83810440-83810459 | None:intergenic | 40.0% | |
| ATGAAGGAACCAATGATGTC+TGG | + | chr3_3:83810480-83810499 | None:intergenic | 40.0% | |
| !! | GACATCATTGGTTCCTTCAT+TGG | - | chr3_3:83810480-83810499 | Msa0478960:intron | 40.0% |
| GTAGTGTTAGGCTAACTCTT+AGG | - | chr3_3:83810714-83810733 | Msa0478960:five_prime_UTR | 40.0% | |
| GATCTCTAATGTGGAGCAAT+AGG | - | chr3_3:83810768-83810787 | Msa0478960:five_prime_UTR | 40.0% | |
| GTTCCAGTCAAATCAATCGT+TGG | + | chr3_3:83810802-83810821 | None:intergenic | 40.0% | |
| AGGCCTTTAACTATGCGTAT+TGG | - | chr3_3:83811122-83811141 | Msa0478960:five_prime_UTR | 40.0% | |
| GTGAACTTGGCCAGTTAATT+TGG | - | chr3_3:83811243-83811262 | Msa0478960:five_prime_UTR | 40.0% | |
| ! | GATCATGTGTTGACAGCCAT+CGG | - | chr3_3:83807053-83807072 | Msa0478960:intron | 45.0% |
| GCAAATGCAGAAGTTACCGA+TGG | + | chr3_3:83807072-83807091 | None:intergenic | 45.0% | |
| ! | CTATTGGTGCTTCTCATTGG+AGG | - | chr3_3:83807173-83807192 | Msa0478960:intron | 45.0% |
| !! | CGATGGCTATTGGTTCACAT+AGG | - | chr3_3:83807231-83807250 | Msa0478960:intron | 45.0% |
| TCACATAGGTTGTCTCAGCA+AGG | - | chr3_3:83807245-83807264 | Msa0478960:intron | 45.0% | |
| CATTGAGGAAATGGCTGCAA+TGG | - | chr3_3:83807292-83807311 | Msa0478960:intron | 45.0% | |
| TTGGTCCGAGCATATCCAAA+CGG | + | chr3_3:83807598-83807617 | None:intergenic | 45.0% | |
| TGGATATGCTCGGACCAAAA+TGG | - | chr3_3:83807600-83807619 | Msa0478960:intron | 45.0% | |
| CAGAGTTGTACAGACCAGAA+TGG | + | chr3_3:83808172-83808191 | None:intergenic | 45.0% | |
| TTCTGGTCTGTACAACTCTG+AGG | - | chr3_3:83808172-83808191 | Msa0478960:intron | 45.0% | |
| AAGGGAAATGCCTTCTGTTC+AGG | - | chr3_3:83808255-83808274 | Msa0478960:intron | 45.0% | |
| GAAATTGAAGGAGAGGACTG+TGG | - | chr3_3:83808360-83808379 | Msa0478960:intron | 45.0% | |
| GTGCACGTTACATAACTGAC+AGG | + | chr3_3:83808550-83808569 | None:intergenic | 45.0% | |
| ATTCACACAGGAAGATGGGT+TGG | + | chr3_3:83808888-83808907 | None:intergenic | 45.0% | |
| GTGGTAACCACATAGAGGTA+AGG | + | chr3_3:83808937-83808956 | None:intergenic | 45.0% | |
| !!! | CTTCTTGTTTTGCTAAGCGC+AGG | + | chr3_3:83809067-83809086 | None:intergenic | 45.0% |
| TTGTGCACAGTCATAGCAAG+TGG | + | chr3_3:83809463-83809482 | None:intergenic | 45.0% | |
| ! | CTTGCTATGACTGTGCACAA+AGG | - | chr3_3:83809463-83809482 | Msa0478960:CDS | 45.0% |
| ! | CATACGCGAGACTCTGATTT+TGG | - | chr3_3:83809531-83809550 | Msa0478960:intron | 45.0% |
| ACAAACTTTGCTCTTAGGGG+TGG | + | chr3_3:83809721-83809740 | None:intergenic | 45.0% | |
| GCAAAGTTTGTCCTGTATGC+CGG | - | chr3_3:83809730-83809749 | Msa0478960:intron | 45.0% | |
| ATTACGGCCTAGTGACATTG+CGG | + | chr3_3:83809914-83809933 | None:intergenic | 45.0% | |
| TGCAGCCAAAATGCAGAAAC+AGG | + | chr3_3:83810131-83810150 | None:intergenic | 45.0% | |
| ACACATGAGAGGGTAAAGTG+TGG | + | chr3_3:83810392-83810411 | None:intergenic | 45.0% | |
| !! | GACCCAACGATTGATTTGAC+TGG | - | chr3_3:83810796-83810815 | Msa0478960:five_prime_UTR | 45.0% |
| TATACAGCTAGATTCGCCGA+TGG | - | chr3_3:83811068-83811087 | Msa0478960:five_prime_UTR | 45.0% | |
| !! | TATGCGTATTGGTGTTGGCA+AGG | - | chr3_3:83811133-83811152 | Msa0478960:five_prime_UTR | 45.0% |
| ! | CTATACTTGCGGCGCTGAAT+AGG | + | chr3_3:83807137-83807156 | None:intergenic | 50.0% |
| CTATTCAGCGCCGCAAGTAT+AGG | - | chr3_3:83807135-83807154 | Msa0478960:CDS | 50.0% | |
| TGAGGAAATGGCTGCAATGG+TGG | - | chr3_3:83807295-83807314 | Msa0478960:intron | 50.0% | |
| TTGTCACACTCTGAATCCGC+AGG | - | chr3_3:83807337-83807356 | Msa0478960:intron | 50.0% | |
| GGAAATGCCTTCTGTTCAGG+AGG | - | chr3_3:83808258-83808277 | Msa0478960:intron | 50.0% | |
| AATGCCTTCTGTTCAGGAGG+TGG | - | chr3_3:83808261-83808280 | Msa0478960:intron | 50.0% | |
| GAAGGAGAGGACTGTGGAAA+TGG | - | chr3_3:83808366-83808385 | Msa0478960:intron | 50.0% | |
| CCACTGTGGTAACCACATAG+AGG | + | chr3_3:83808942-83808961 | None:intergenic | 50.0% | |
| CCTCTATGTGGTTACCACAG+TGG | - | chr3_3:83808939-83808958 | Msa0478960:intron | 50.0% | |
| GCGACTCACAACCTTCTCTT+GGG | - | chr3_3:83808971-83808990 | Msa0478960:intron | 50.0% | |
| ACCTTCTCTTGGGTAGTGAC+CGG | - | chr3_3:83808981-83809000 | Msa0478960:intron | 50.0% | |
| CAGTCATAGCAAGTGGCACA+AGG | + | chr3_3:83809456-83809475 | None:intergenic | 50.0% | |
| GCATCCACCTCCTGAACAGA+AGG | + | chr3_3:83808268-83808287 | None:intergenic | 55.0% | |
| GGACTGCCCTTACCTCTATG+TGG | - | chr3_3:83808927-83808946 | Msa0478960:intron | 55.0% | |
| ! | GTCGCGAGAGTTTTCCACTG+TGG | + | chr3_3:83808956-83808975 | None:intergenic | 55.0% |
| CGCGACTCACAACCTTCTCT+TGG | - | chr3_3:83808970-83808989 | Msa0478960:intron | 55.0% | |
| ACCGGTCACTACCCAAGAGA+AGG | + | chr3_3:83808985-83809004 | None:intergenic | 55.0% | |
| CAGCGCCGCAAGTATAGGAG+TGG | - | chr3_3:83807140-83807159 | Msa0478960:intron | 60.0% | |
| GGCTGCAATGGTGGCTGCAA+TGG | - | chr3_3:83807304-83807323 | Msa0478960:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83806900 | 83811319 | 83806900 | ID=Msa0478960;Name=Msa0478960 |
| chr3_3 | mRNA | 83806900 | 83811319 | 83806900 | ID=Msa0478960-mRNA-1;Parent=Msa0478960;Name=Msa0478960-mRNA-1;_AED=0.27;_eAED=0.27;_QI=922|0.6|0.66|1|0.4|0.5|6|0|117 |
| chr3_3 | exon | 83806900 | 83806926 | 83806900 | ID=Msa0478960-mRNA-1:exon:23722;Parent=Msa0478960-mRNA-1 |
| chr3_3 | exon | 83807065 | 83807157 | 83807065 | ID=Msa0478960-mRNA-1:exon:23721;Parent=Msa0478960-mRNA-1 |
| chr3_3 | exon | 83808235 | 83808240 | 83808235 | ID=Msa0478960-mRNA-1:exon:23720;Parent=Msa0478960-mRNA-1 |
| chr3_3 | exon | 83809428 | 83809517 | 83809428 | ID=Msa0478960-mRNA-1:exon:23719;Parent=Msa0478960-mRNA-1 |
| chr3_3 | exon | 83809823 | 83810098 | 83809823 | ID=Msa0478960-mRNA-1:exon:23718;Parent=Msa0478960-mRNA-1 |
| chr3_3 | exon | 83810539 | 83811319 | 83810539 | ID=Msa0478960-mRNA-1:exon:23717;Parent=Msa0478960-mRNA-1 |
| chr3_3 | five_prime_UTR | 83810539 | 83811319 | 83810539 | ID=Msa0478960-mRNA-1:five_prime_utr;Parent=Msa0478960-mRNA-1 |
| chr3_3 | five_prime_UTR | 83809958 | 83810098 | 83809958 | ID=Msa0478960-mRNA-1:five_prime_utr;Parent=Msa0478960-mRNA-1 |
| chr3_3 | CDS | 83809823 | 83809957 | 83809823 | ID=Msa0478960-mRNA-1:cds;Parent=Msa0478960-mRNA-1 |
| chr3_3 | CDS | 83809428 | 83809517 | 83809428 | ID=Msa0478960-mRNA-1:cds;Parent=Msa0478960-mRNA-1 |
| chr3_3 | CDS | 83808235 | 83808240 | 83808235 | ID=Msa0478960-mRNA-1:cds;Parent=Msa0478960-mRNA-1 |
| chr3_3 | CDS | 83807065 | 83807157 | 83807065 | ID=Msa0478960-mRNA-1:cds;Parent=Msa0478960-mRNA-1 |
| chr3_3 | CDS | 83806900 | 83806926 | 83806900 | ID=Msa0478960-mRNA-1:cds;Parent=Msa0478960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
