Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478920 | KEH20715.1 | 96.000 | 75 | 3 | 0 | 1 | 75 | 179 | 253 | 5.52e-39 | 145 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478920 | sp|Q8RXJ0|NUF2_ARATH | 52.000 | 75 | 36 | 0 | 1 | 75 | 174 | 248 | 2.17e-20 | 87.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478920 | A0A072U4F7 | 96.000 | 75 | 3 | 0 | 1 | 75 | 179 | 253 | 2.64e-39 | 145 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0117770 | Msa0478920 | 0.806200 | 9.234817e-50 | -8.615850e-47 |
Msa0188830 | Msa0478920 | 0.805490 | 1.301531e-49 | -8.615850e-47 |
Msa0201070 | Msa0478920 | 0.807744 | 4.353095e-50 | -8.615850e-47 |
Msa0478920 | Msa0478960 | 0.971951 | 5.593929e-134 | -8.615850e-47 |
Msa0478920 | Msa0479010 | 0.953790 | 1.257970e-111 | -8.615850e-47 |
Msa0478920 | Msa0843260 | 0.801248 | 9.846714e-49 | -8.615850e-47 |
Msa0478920 | Msa0977360 | 0.806678 | 7.321836e-50 | -8.615850e-47 |
Msa0478920 | Msa1228590 | 0.805796 | 1.122882e-49 | -8.615850e-47 |
Msa0478920 | Msa1323350 | 0.806004 | 1.015054e-49 | -8.615850e-47 |
Msa0478920 | Msa1392260 | 0.809126 | 2.207044e-50 | -8.615850e-47 |
Msa0478920 | Msa1403480 | 0.807989 | 3.860535e-50 | -8.615850e-47 |
Msa0288100 | Msa0478920 | 0.812258 | 4.641183e-51 | -8.615850e-47 |
Msa0309020 | Msa0478920 | 0.823785 | 1.149046e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478920 | MtrunA17_Chr8g0380721 | 96.000 | 75 | 3 | 0 | 1 | 75 | 179 | 253 | 5.68e-43 | 145 |
Msa0478920 | MtrunA17_Chr4g0025011 | 68.085 | 94 | 21 | 1 | 1 | 94 | 77 | 161 | 2.29e-36 | 121 |
Msa0478920 | MtrunA17_Chr8g0380701 | 80.000 | 75 | 15 | 0 | 1 | 75 | 152 | 226 | 1.92e-35 | 122 |
Msa0478920 | MtrunA17_Chr8g0382711 | 91.176 | 34 | 3 | 0 | 74 | 107 | 111 | 144 | 2.14e-16 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0478920 | AT1G61000.1 | 52.000 | 75 | 36 | 0 | 1 | 75 | 174 | 248 | 2.21e-21 | 87.8 |
Msa0478920 | AT4G39710.2 | 88.235 | 34 | 4 | 0 | 74 | 107 | 115 | 148 | 2.37e-15 | 68.6 |
Msa0478920 | AT4G39710.1 | 88.235 | 34 | 4 | 0 | 74 | 107 | 115 | 148 | 3.83e-15 | 68.6 |
Msa0478920 | AT4G39710.3 | 88.235 | 34 | 4 | 0 | 74 | 107 | 115 | 148 | 3.83e-15 | 68.6 |
Find 72 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACTCTTAATCAGCCATTT+TGG | 0.249434 | 3_3:+83778490 | None:intergenic |
ATGACATCTGTTTATTGTTC+AGG | 0.250147 | 3_3:+83777783 | None:intergenic |
TGCATTTGCTCAATTGCTTT+GGG | 0.264099 | 3_3:-83779021 | Msa0478920:five_prime_UTR |
GGCAAATTGTGCAGATAAAA+TGG | 0.274667 | 3_3:-83777983 | Msa0478920:five_prime_UTR |
CTGCATTTGCTCAATTGCTT+TGG | 0.275397 | 3_3:-83779022 | Msa0478920:five_prime_UTR |
GTGCTGGAAAATTCTTCTTT+TGG | 0.284743 | 3_3:+83778700 | None:intergenic |
AATGATACCTGTACTTTATC+AGG | 0.298393 | 3_3:+83777327 | None:intergenic |
CTGTAGATGATTTAAATGTT+TGG | 0.301649 | 3_3:-83778582 | Msa0478920:five_prime_UTR |
GTCTGAATTGTGATAGTATT+CGG | 0.311465 | 3_3:-83778642 | Msa0478920:five_prime_UTR |
ACACCAATACGCATAGTTAA+AGG | 0.322478 | 3_3:+83774986 | None:intergenic |
AAGGGAAATGCCTTCTGTTC+AGG | 0.323153 | 3_3:-83777849 | Msa0478920:exon |
AATGACTATCATTCTCTTTG+TGG | 0.360858 | 3_3:+83778831 | None:intergenic |
CTATACTTGCGGCGCTGAAT+AGG | 0.365832 | 3_3:+83778970 | None:intergenic |
AACCTTAGTATAACTGTTGT+TGG | 0.383313 | 3_3:-83778740 | Msa0478920:five_prime_UTR |
AATGATAGTCATTGAGGAAA+TGG | 0.392182 | 3_3:-83778821 | Msa0478920:five_prime_UTR |
AATCTATTGGTGCTTCTCAT+TGG | 0.394864 | 3_3:-83778934 | Msa0478920:five_prime_UTR |
TGGATATGCTCGGACCAAAA+TGG | 0.396223 | 3_3:-83778504 | Msa0478920:five_prime_UTR |
TGTTTGGAACAATATATCTA+AGG | 0.397747 | 3_3:-83778566 | Msa0478920:five_prime_UTR |
AAAACTGTTGGCATTGCAAT+AGG | 0.398141 | 3_3:+83778904 | None:intergenic |
GACTGTGGAAATGGATGATA+AGG | 0.411995 | 3_3:-83777729 | Msa0478920:intron |
TTCTGGTGCTGAATATAAAC+TGG | 0.412690 | 3_3:-83777400 | Msa0478920:CDS |
CTATTCAGCGCCGCAAGTAT+AGG | 0.427697 | 3_3:-83778969 | Msa0478920:five_prime_UTR |
TTGTCAGTTACGATGGCTAT+TGG | 0.429901 | 3_3:-83778883 | Msa0478920:five_prime_UTR |
CTCCACAGAGCATTTGATAA+AGG | 0.432915 | 3_3:+83774813 | None:intergenic |
GAAGGAGAGGACTGTGGAAA+TGG | 0.440042 | 3_3:-83777738 | Msa0478920:CDS |
CGATTCTGCATGTTAAAGTC+TGG | 0.442759 | 3_3:+83778453 | None:intergenic |
GATATTGTACAATTCTTGAA+AGG | 0.450055 | 3_3:-83777868 | Msa0478920:five_prime_UTR |
GGCTGCAATGGTGGCTGCAA+TGG | 0.454503 | 3_3:-83778800 | Msa0478920:five_prime_UTR |
AAGTACTATAAAGAAATTGA+AGG | 0.472617 | 3_3:-83777756 | Msa0478920:CDS |
AAATGGCTGATTAAGAGTTA+AGG | 0.474751 | 3_3:-83778487 | Msa0478920:five_prime_UTR |
CTATTGGTGCTTCTCATTGG+AGG | 0.489832 | 3_3:-83778931 | Msa0478920:five_prime_UTR |
ATATTGTACAATTCTTGAAA+GGG | 0.490218 | 3_3:-83777867 | Msa0478920:five_prime_UTR |
AACAACAGTTATACTAAGGT+TGG | 0.501460 | 3_3:+83778742 | None:intergenic |
AGGCCTTTAACTATGCGTAT+TGG | 0.506428 | 3_3:-83774989 | Msa0478920:CDS |
TAGAAAAGAGCAAAGAGTGC+TGG | 0.507946 | 3_3:+83778684 | None:intergenic |
CTCCAACAACAGTTATACTA+AGG | 0.511684 | 3_3:+83778738 | None:intergenic |
TATTGGTGCTTCTCATTGGA+GGG | 0.514746 | 3_3:-83778930 | Msa0478920:five_prime_UTR |
TTAACTATGCGTATTGGTGT+TGG | 0.521341 | 3_3:-83774983 | Msa0478920:CDS |
AAAGAGAATGATAGTCATTG+AGG | 0.526397 | 3_3:-83778827 | Msa0478920:five_prime_UTR |
ATAGTAGTTATAAACGTGCT+AGG | 0.527374 | 3_3:-83775009 | Msa0478920:CDS |
GATCATGTGTTGACAGCCAT+CGG | 0.527698 | 3_3:-83779051 | Msa0478920:five_prime_UTR |
AATGCCTTCTGTTCAGGAGG+TGG | 0.532743 | 3_3:-83777843 | Msa0478920:CDS |
GTACAAAATGTTCAAGAGCA+TGG | 0.533679 | 3_3:-83777378 | Msa0478920:CDS |
GAGTGGAATTGACAATCTAT+TGG | 0.533730 | 3_3:-83778947 | Msa0478920:five_prime_UTR |
ACTATCACAATTCAGACATC+GGG | 0.534239 | 3_3:+83778648 | None:intergenic |
TTATTCCGTTTGGATATGCT+CGG | 0.539101 | 3_3:-83778514 | Msa0478920:five_prime_UTR |
CAATTCCACTCCTATACTTG+CGG | 0.549747 | 3_3:+83778959 | None:intergenic |
GCATCCACCTCCTGAACAGA+AGG | 0.551705 | 3_3:+83777839 | None:intergenic |
AATTGTACAATATCAACTCC+AGG | 0.560612 | 3_3:+83777877 | None:intergenic |
TTGGTCCGAGCATATCCAAA+CGG | 0.569946 | 3_3:+83778509 | None:intergenic |
CGATGGCTATTGGTTCACAT+AGG | 0.572428 | 3_3:-83778873 | Msa0478920:five_prime_UTR |
ATCGTAACTGACAAAACTGT+TGG | 0.576198 | 3_3:+83778892 | None:intergenic |
TACTATCACAATTCAGACAT+CGG | 0.579861 | 3_3:+83778647 | None:intergenic |
TTGTCACACTCTGAATCCGC+AGG | 0.583371 | 3_3:-83778767 | Msa0478920:five_prime_UTR |
ACTATCAAATACTATTCCAT+CGG | 0.594477 | 3_3:+83775027 | None:intergenic |
CTATAAAGAAATTGAAGGAG+AGG | 0.594531 | 3_3:-83777751 | Msa0478920:CDS |
GAAATTGAAGGAGAGGACTG+TGG | 0.597307 | 3_3:-83777744 | Msa0478920:CDS |
TATACTAAGGTTGGATCCTG+CGG | 0.606504 | 3_3:+83778751 | None:intergenic |
TGAGGAAATGGCTGCAATGG+TGG | 0.607777 | 3_3:-83778809 | Msa0478920:five_prime_UTR |
CATTGAGGAAATGGCTGCAA+TGG | 0.609889 | 3_3:-83778812 | Msa0478920:five_prime_UTR |
TCAATCGCCTGATAAAGTAC+AGG | 0.611191 | 3_3:-83777334 | Msa0478920:intron |
TTCCTTTATCAAATGCTCTG+TGG | 0.615221 | 3_3:-83774815 | Msa0478920:CDS |
CAGAGTTGTACAGACCAGAA+TGG | 0.623697 | 3_3:+83777935 | None:intergenic |
TATGCGTATTGGTGTTGGCA+AGG | 0.624457 | 3_3:-83774978 | Msa0478920:intron |
TCAACACATGATCAAAGCCA+TGG | 0.635234 | 3_3:+83779061 | None:intergenic |
CAGCGCCGCAAGTATAGGAG+TGG | 0.639208 | 3_3:-83778964 | Msa0478920:five_prime_UTR |
GGAAATGCCTTCTGTTCAGG+AGG | 0.641002 | 3_3:-83777846 | Msa0478920:exon |
TAACATGCAGAATCGACAAG+AGG | 0.642308 | 3_3:-83778445 | Msa0478920:intron |
TCACATAGGTTGTCTCAGCA+AGG | 0.643329 | 3_3:-83778859 | Msa0478920:five_prime_UTR |
GCAAATGCAGAAGTTACCGA+TGG | 0.680742 | 3_3:+83779035 | None:intergenic |
TATACAGCTAGATTCGCCGA+TGG | 0.689447 | 3_3:-83775043 | Msa0478920:CDS |
TTCTGGTCTGTACAACTCTG+AGG | 0.704995 | 3_3:-83777932 | Msa0478920:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATTATGTAATATGA+AGG | + | chr3_3:83777053-83777072 | None:intergenic | 10.0% |
!! | TTTATTGTATTAAAAAATTG+TGG | - | chr3_3:83777067-83777086 | Msa0478920:intron | 10.0% |
!! | ATGTTTATGTGAATAATTAA+TGG | - | chr3_3:83776420-83776439 | Msa0478920:intron | 15.0% |
!! | ATATATATTAATTCATGTGT+TGG | - | chr3_3:83776522-83776541 | Msa0478920:intron | 15.0% |
!!! | ATATTGTAAATGTGTTTTAT+TGG | - | chr3_3:83776820-83776839 | Msa0478920:intron | 15.0% |
!!! | GTATAATACAAAAATTTTAG+AGG | - | chr3_3:83777736-83777755 | Msa0478920:CDS | 15.0% |
!! | ATAATTAAGATGAAACTAAT+TGG | + | chr3_3:83778422-83778441 | None:intergenic | 15.0% |
!!! | TCGTTTTCTTTTAATTATTT+AGG | - | chr3_3:83778732-83778751 | Msa0478920:five_prime_UTR | 15.0% |
!!! | CGATACTATTTATTTTTTTA+TGG | - | chr3_3:83778825-83778844 | Msa0478920:five_prime_UTR | 15.0% |
!!! | ATCCAACTTTTTGATATATT+AGG | + | chr3_3:83774845-83774864 | None:intergenic | 20.0% |
!! | GGTAAATGAATATTACAATT+TGG | + | chr3_3:83775746-83775765 | None:intergenic | 20.0% |
!!! | ATTAATTGCATATTTGAAGT+CGG | - | chr3_3:83775780-83775799 | Msa0478920:intron | 20.0% |
!! | ATCAAATTTCAACATCAATT+TGG | + | chr3_3:83775814-83775833 | None:intergenic | 20.0% |
!! | AAAAGAAATCATTAGTATAG+GGG | + | chr3_3:83776006-83776025 | None:intergenic | 20.0% |
!! | CAAAAGAAATCATTAGTATA+GGG | + | chr3_3:83776007-83776026 | None:intergenic | 20.0% |
!! | TCAAAAGAAATCATTAGTAT+AGG | + | chr3_3:83776008-83776027 | None:intergenic | 20.0% |
!!! | AATGATTTCTTTTGAATTGT+AGG | - | chr3_3:83776013-83776032 | Msa0478920:intron | 20.0% |
!!! | ATGATTTCTTTTGAATTGTA+GGG | - | chr3_3:83776014-83776033 | Msa0478920:intron | 20.0% |
!! | ATATTGTACAATTCTTGAAA+GGG | - | chr3_3:83776151-83776170 | Msa0478920:intron | 20.0% |
!! | AAGTACTATAAAGAAATTGA+AGG | - | chr3_3:83776262-83776281 | Msa0478920:intron | 20.0% |
!! | TTTATGTGAATAATTAATGG+TGG | - | chr3_3:83776423-83776442 | Msa0478920:intron | 20.0% |
!! | TAGTTAAGTAGTTATTTAAG+AGG | - | chr3_3:83777209-83777228 | Msa0478920:intron | 20.0% |
!!! | TATTTAAGAGGTTAGTTAAT+TGG | - | chr3_3:83777221-83777240 | Msa0478920:intron | 20.0% |
!!! | TTAGTAGATTTTTCATGAAA+AGG | - | chr3_3:83777255-83777274 | Msa0478920:intron | 20.0% |
!! | TAAAAAGATTATCAACAGTT+AGG | - | chr3_3:83777702-83777721 | Msa0478920:intron | 20.0% |
!!! | CATTGAGTTCATTTTATTTA+TGG | - | chr3_3:83777942-83777961 | Msa0478920:five_prime_UTR | 20.0% |
!! | AATAAGCAGGATTATAATTT+GGG | + | chr3_3:83777988-83778007 | None:intergenic | 20.0% |
!! | AAATAAGCAGGATTATAATT+TGG | + | chr3_3:83777989-83778008 | None:intergenic | 20.0% |
!!! | TAATTATTATGATGTTTTCC+TGG | - | chr3_3:83778435-83778454 | Msa0478920:intron | 20.0% |
!!! | TTTTATTTCTTGCTACATTT+TGG | - | chr3_3:83778598-83778617 | Msa0478920:five_prime_UTR | 20.0% |
! | TGCCTAATATATCAAAAAGT+TGG | - | chr3_3:83774840-83774859 | Msa0478920:intron | 25.0% |
! | CTGTAGATGATTTAAATGTT+TGG | - | chr3_3:83775436-83775455 | Msa0478920:intron | 25.0% |
!! | TGTTTGGAACAATATATCTA+AGG | - | chr3_3:83775452-83775471 | Msa0478920:intron | 25.0% |
! | GTTATAGTAGTAATTCTCTT+TGG | - | chr3_3:83775601-83775620 | Msa0478920:intron | 25.0% |
! | TTGTACAAAAGTTGCTAAAA+AGG | - | chr3_3:83775635-83775654 | Msa0478920:intron | 25.0% |
! | CTAACTATTCATTATAGTAG+AGG | - | chr3_3:83775666-83775685 | Msa0478920:intron | 25.0% |
! | AATTTCAACATCAATTTGGA+TGG | + | chr3_3:83775810-83775829 | None:intergenic | 25.0% |
! | TCATTTCACGAAAAATCAAT+AGG | - | chr3_3:83775856-83775875 | Msa0478920:intron | 25.0% |
! | TCTTACTAACGACTTAAAAA+AGG | + | chr3_3:83775913-83775932 | None:intergenic | 25.0% |
! | GATATTGTACAATTCTTGAA+AGG | - | chr3_3:83776150-83776169 | Msa0478920:intron | 25.0% |
! | TAATCTTTACTTCTTGATGT+TGG | - | chr3_3:83776354-83776373 | Msa0478920:intron | 25.0% |
! | AATCTTTACTTCTTGATGTT+GGG | - | chr3_3:83776355-83776374 | Msa0478920:intron | 25.0% |
!!! | TGAATAATTAATGGTGGATT+AGG | - | chr3_3:83776429-83776448 | Msa0478920:intron | 25.0% |
! | ATGAAGGACATAAATTATGT+TGG | + | chr3_3:83777037-83777056 | None:intergenic | 25.0% |
!! | ATGAGCTATTCTTTTATGTT+GGG | + | chr3_3:83777134-83777153 | None:intergenic | 25.0% |
!! | TATGAGCTATTCTTTTATGT+TGG | + | chr3_3:83777135-83777154 | None:intergenic | 25.0% |
!! | AGGTTAGTTAATTGGTTAAT+GGG | - | chr3_3:83777229-83777248 | Msa0478920:intron | 25.0% |
! | ATTCAAACATGCGTTAAAAT+TGG | - | chr3_3:83777528-83777547 | Msa0478920:intron | 25.0% |
! | TTACTCTATGAATAAGTTTC+CGG | + | chr3_3:83777666-83777685 | None:intergenic | 25.0% |
!!! | ATAGTTCTAAATTGCGATTA+CGG | + | chr3_3:83777844-83777863 | None:intergenic | 25.0% |
! | ATCAAAATGAGAAAATAAGC+AGG | + | chr3_3:83778001-83778020 | None:intergenic | 25.0% |
!!! | CATTTTGATACTTGATATCA+TGG | - | chr3_3:83778012-83778031 | Msa0478920:intron | 25.0% |
!! | AAGTTAAAATGTCATTTGAG+TGG | - | chr3_3:83778188-83778207 | Msa0478920:intron | 25.0% |
!! | AGTTAAAATGTCATTTGAGT+GGG | - | chr3_3:83778189-83778208 | Msa0478920:intron | 25.0% |
! | ATGAGAAAAAGGAATTTGAA+TGG | + | chr3_3:83778252-83778271 | None:intergenic | 25.0% |
! | GACAACAACGAAATTATATT+TGG | + | chr3_3:83778806-83778825 | None:intergenic | 25.0% |
!!! | TTTTTTATGGTGTTTCCTTT+AGG | - | chr3_3:83778838-83778857 | Msa0478920:five_prime_UTR | 25.0% |
! | ACTATCAAATACTATTCCAT+CGG | + | chr3_3:83778994-83779013 | None:intergenic | 25.0% |
! | AATTCAAACTCCAAATTAAC+TGG | + | chr3_3:83779163-83779182 | None:intergenic | 25.0% |
AATGACTATCATTCTCTTTG+TGG | + | chr3_3:83775190-83775209 | None:intergenic | 30.0% | |
AAAGAGAATGATAGTCATTG+AGG | - | chr3_3:83775191-83775210 | Msa0478920:intron | 30.0% | |
AATGATAGTCATTGAGGAAA+TGG | - | chr3_3:83775197-83775216 | Msa0478920:intron | 30.0% | |
AACAACAGTTATACTAAGGT+TGG | + | chr3_3:83775279-83775298 | None:intergenic | 30.0% | |
AACCTTAGTATAACTGTTGT+TGG | - | chr3_3:83775278-83775297 | Msa0478920:intron | 30.0% | |
! | TTGCTCTTTTCTATGAAGAT+TGG | - | chr3_3:83775344-83775363 | Msa0478920:intron | 30.0% |
TACTATCACAATTCAGACAT+CGG | + | chr3_3:83775374-83775393 | None:intergenic | 30.0% | |
GTCTGAATTGTGATAGTATT+CGG | - | chr3_3:83775376-83775395 | Msa0478920:intron | 30.0% | |
! | ATGCAGAATTTTATTCCGTT+TGG | - | chr3_3:83775494-83775513 | Msa0478920:intron | 30.0% |
! | TAACTCTTAATCAGCCATTT+TGG | + | chr3_3:83775531-83775550 | None:intergenic | 30.0% |
AAATGGCTGATTAAGAGTTA+AGG | - | chr3_3:83775531-83775550 | Msa0478920:intron | 30.0% | |
GTAGAGGTTAAAAAGATTTC+AGG | - | chr3_3:83775682-83775701 | Msa0478920:intron | 30.0% | |
AATTAATCATGTTCAGTGGA+TGG | + | chr3_3:83775767-83775786 | None:intergenic | 30.0% | |
ATGCAATTAATCATGTTCAG+TGG | + | chr3_3:83775771-83775790 | None:intergenic | 30.0% | |
TGATTGATCAACAAAAAACC+TGG | - | chr3_3:83776123-83776142 | Msa0478920:intron | 30.0% | |
AATTGTACAATATCAACTCC+AGG | + | chr3_3:83776144-83776163 | None:intergenic | 30.0% | |
ATGACATCTGTTTATTGTTC+AGG | + | chr3_3:83776238-83776257 | None:intergenic | 30.0% | |
CTATAAAGAAATTGAAGGAG+AGG | - | chr3_3:83776267-83776286 | Msa0478920:intron | 30.0% | |
ATCTTTACTTCTTGATGTTG+GGG | - | chr3_3:83776356-83776375 | Msa0478920:intron | 30.0% | |
! | TTAATTCATGTGTTGGTACT+TGG | - | chr3_3:83776529-83776548 | Msa0478920:intron | 30.0% |
AATGATACCTGTACTTTATC+AGG | + | chr3_3:83776694-83776713 | None:intergenic | 30.0% | |
! | TACAGGTATCATTTTCATGT+TGG | - | chr3_3:83776701-83776720 | Msa0478920:intron | 30.0% |
CACATTTACAATATTCACAC+AGG | + | chr3_3:83776814-83776833 | None:intergenic | 30.0% | |
! | GAGGTTAGTTAATTGGTTAA+TGG | - | chr3_3:83777228-83777247 | Msa0478920:intron | 30.0% |
AACAAATTCAGATGTGTCAA+AGG | - | chr3_3:83777282-83777301 | Msa0478920:intron | 30.0% | |
TCGAGTTTAGTAAAATCACT+GGG | + | chr3_3:83777503-83777522 | None:intergenic | 30.0% | |
ATCGAGTTTAGTAAAATCAC+TGG | + | chr3_3:83777504-83777523 | None:intergenic | 30.0% | |
!! | AATTGTGATTTTAGCCGTAT+TGG | - | chr3_3:83777777-83777796 | Msa0478920:CDS | 30.0% |
! | GTAATCGCAATTTAGAACTA+TGG | - | chr3_3:83777843-83777862 | Msa0478920:CDS | 30.0% |
AATATGCAGATTGATGTATG+AGG | - | chr3_3:83777884-83777903 | Msa0478920:five_prime_UTR | 30.0% | |
AATATTGTTAGACGAAGGTT+AGG | + | chr3_3:83778113-83778132 | None:intergenic | 30.0% | |
ATTAGAGGTTCATAATCATG+TGG | - | chr3_3:83778130-83778149 | Msa0478920:intron | 30.0% | |
! | GTTAAAATGTCATTTGAGTG+GGG | - | chr3_3:83778190-83778209 | Msa0478920:intron | 30.0% |
TAGATCACACTTTAATCTCT+CGG | + | chr3_3:83778226-83778245 | None:intergenic | 30.0% | |
!! | TGTGTTATTTACACATGAGA+GGG | + | chr3_3:83778316-83778335 | None:intergenic | 30.0% |
!! | ATGTGTTATTTACACATGAG+AGG | + | chr3_3:83778317-83778336 | None:intergenic | 30.0% |
AATCATAATCCAGACATCAT+TGG | - | chr3_3:83778382-83778401 | Msa0478920:intron | 30.0% | |
AAACTAATTGGAACCAATGA+AGG | + | chr3_3:83778410-83778429 | None:intergenic | 30.0% | |
AAGTCTTGATTCATGAAAAG+AGG | + | chr3_3:83778480-83778499 | None:intergenic | 30.0% | |
! | TCTTTTCATGAATCAAGACT+TGG | - | chr3_3:83778479-83778498 | Msa0478920:five_prime_UTR | 30.0% |
!!! | TTTGGTTTTGTTGTAGTGTT+AGG | - | chr3_3:83778616-83778635 | Msa0478920:five_prime_UTR | 30.0% |
CAACGAAATTATATTTGGAC+TGG | + | chr3_3:83778801-83778820 | None:intergenic | 30.0% | |
ATAGTAGTTATAAACGTGCT+AGG | - | chr3_3:83779009-83779028 | Msa0478920:five_prime_UTR | 30.0% | |
! | GAACTGCAATTTTATGTCCA+TGG | - | chr3_3:83774940-83774959 | Msa0478920:intron | 35.0% |
TGCATTTGCTCAATTGCTTT+GGG | - | chr3_3:83774997-83775016 | Msa0478920:CDS | 35.0% | |
GAGTGGAATTGACAATCTAT+TGG | - | chr3_3:83775071-83775090 | Msa0478920:intron | 35.0% | |
! | AATCTATTGGTGCTTCTCAT+TGG | - | chr3_3:83775084-83775103 | Msa0478920:intron | 35.0% |
AAAACTGTTGGCATTGCAAT+AGG | + | chr3_3:83775117-83775136 | None:intergenic | 35.0% | |
ATCGTAACTGACAAAACTGT+TGG | + | chr3_3:83775129-83775148 | None:intergenic | 35.0% | |
!! | AACAGTTTTGTCAGTTACGA+TGG | - | chr3_3:83775128-83775147 | Msa0478920:intron | 35.0% |
CTCCAACAACAGTTATACTA+AGG | + | chr3_3:83775283-83775302 | None:intergenic | 35.0% | |
! | GGAAAATTCTTCTTTTGGCA+AGG | + | chr3_3:83775316-83775335 | None:intergenic | 35.0% |
! | GTGCTGGAAAATTCTTCTTT+TGG | + | chr3_3:83775321-83775340 | None:intergenic | 35.0% |
ACTATCACAATTCAGACATC+GGG | + | chr3_3:83775373-83775392 | None:intergenic | 35.0% | |
TTATTCCGTTTGGATATGCT+CGG | - | chr3_3:83775504-83775523 | Msa0478920:intron | 35.0% | |
AAGTCGTTAGTAAGACTCAT+CGG | - | chr3_3:83775918-83775937 | Msa0478920:intron | 35.0% | |
GCACATTTGTCATGTTATTG+TGG | - | chr3_3:83775948-83775967 | Msa0478920:intron | 35.0% | |
TAGGGGAAAAGTAAGAAAGA+AGG | + | chr3_3:83775989-83776008 | None:intergenic | 35.0% | |
GGCAAATTGTGCAGATAAAA+TGG | - | chr3_3:83776035-83776054 | Msa0478920:intron | 35.0% | |
! | AAACGATGCTTTTACCATTC+TGG | - | chr3_3:83776069-83776088 | Msa0478920:intron | 35.0% |
!!! | TGGGGTTTTTGAGTAGTATA+TGG | - | chr3_3:83776374-83776393 | Msa0478920:intron | 35.0% |
! | CAGAAATCTGAGGTAACAAA+AGG | + | chr3_3:83776603-83776622 | None:intergenic | 35.0% |
! | CTTTTGTTACCTCAGATTTC+TGG | - | chr3_3:83776601-83776620 | Msa0478920:intron | 35.0% |
! | TTCTGGTGCTGAATATAAAC+TGG | - | chr3_3:83776618-83776637 | Msa0478920:intron | 35.0% |
GTACAAAATGTTCAAGAGCA+TGG | - | chr3_3:83776640-83776659 | Msa0478920:intron | 35.0% | |
CAATATTCACACAGGAAGAT+GGG | + | chr3_3:83776806-83776825 | None:intergenic | 35.0% | |
ACAATATTCACACAGGAAGA+TGG | + | chr3_3:83776807-83776826 | None:intergenic | 35.0% | |
ACACCAAAGTCACAACATAA+TGG | - | chr3_3:83777163-83777182 | Msa0478920:intron | 35.0% | |
!! | ACTCTGATTTTGGCACAATT+TGG | - | chr3_3:83777455-83777474 | Msa0478920:intron | 35.0% |
! | TAATTAGAGTACCTTTGTGC+AGG | - | chr3_3:83777566-83777585 | Msa0478920:intron | 35.0% |
ACGGCAAAATACATCCAATA+CGG | + | chr3_3:83777794-83777813 | None:intergenic | 35.0% | |
CATTGCGGACAATTATATCA+CGG | + | chr3_3:83777813-83777832 | None:intergenic | 35.0% | |
!!! | ATCATCCTGTTTCTGCATTT+TGG | - | chr3_3:83778037-83778056 | Msa0478920:intron | 35.0% |
CCTCTAATATTGTTAGACGA+AGG | + | chr3_3:83778118-83778137 | None:intergenic | 35.0% | |
CCTTCGTCTAACAATATTAG+AGG | - | chr3_3:83778115-83778134 | Msa0478920:intron | 35.0% | |
CCAAAATGCACGACTAAATT+GGG | + | chr3_3:83778353-83778372 | None:intergenic | 35.0% | |
! | CATATTTTGTTCATGAGACC+AGG | + | chr3_3:83778456-83778475 | None:intergenic | 35.0% |
GTATAGTGTAACTTCTGCTT+TGG | - | chr3_3:83778567-83778586 | Msa0478920:five_prime_UTR | 35.0% | |
!! | TACTCCTATGAAGAGTACTA+TGG | + | chr3_3:83778655-83778674 | None:intergenic | 35.0% |
ATAGGAGTAGATCTCTAATG+TGG | - | chr3_3:83778666-83778685 | Msa0478920:five_prime_UTR | 35.0% | |
TTCCAGTCAAATCAATCGTT+GGG | + | chr3_3:83778708-83778727 | None:intergenic | 35.0% | |
ACATCAATAAGCTCTCCTAA+AGG | + | chr3_3:83778856-83778875 | None:intergenic | 35.0% | |
ACACCAATACGCATAGTTAA+AGG | + | chr3_3:83779035-83779054 | None:intergenic | 35.0% | |
! | TTAACTATGCGTATTGGTGT+TGG | - | chr3_3:83779035-83779054 | Msa0478920:five_prime_UTR | 35.0% |
! | GCTGCTAATTTTTGTGAACT+TGG | - | chr3_3:83779137-83779156 | Msa0478920:five_prime_UTR | 35.0% |
GATAAAGGAACATCTGCAAA+AGG | + | chr3_3:83779193-83779212 | None:intergenic | 35.0% | |
TTCCTTTATCAAATGCTCTG+TGG | - | chr3_3:83779203-83779222 | Msa0478920:five_prime_UTR | 35.0% | |
TCAACACATGATCAAAGCCA+TGG | + | chr3_3:83774960-83774979 | None:intergenic | 40.0% | |
CTGCATTTGCTCAATTGCTT+TGG | - | chr3_3:83774996-83775015 | Msa0478920:CDS | 40.0% | |
CAATTCCACTCCTATACTTG+CGG | + | chr3_3:83775062-83775081 | None:intergenic | 40.0% | |
! | TATTGGTGCTTCTCATTGGA+GGG | - | chr3_3:83775088-83775107 | Msa0478920:intron | 40.0% |
TTGTCAGTTACGATGGCTAT+TGG | - | chr3_3:83775135-83775154 | Msa0478920:intron | 40.0% | |
TATACTAAGGTTGGATCCTG+CGG | + | chr3_3:83775270-83775289 | None:intergenic | 40.0% | |
! | TAGAAAAGAGCAAAGAGTGC+TGG | + | chr3_3:83775337-83775356 | None:intergenic | 40.0% |
CGATTCTGCATGTTAAAGTC+TGG | + | chr3_3:83775568-83775587 | None:intergenic | 40.0% | |
TAACATGCAGAATCGACAAG+AGG | - | chr3_3:83775573-83775592 | Msa0478920:intron | 40.0% | |
GACTGTGGAAATGGATGATA+AGG | - | chr3_3:83776289-83776308 | Msa0478920:intron | 40.0% | |
TGCACGTTACATAACTGACA+GGG | + | chr3_3:83776463-83776482 | None:intergenic | 40.0% | |
TATTCAGCACCAGAAATCTG+AGG | + | chr3_3:83776613-83776632 | None:intergenic | 40.0% | |
TCAATCGCCTGATAAAGTAC+AGG | - | chr3_3:83776684-83776703 | Msa0478920:intron | 40.0% | |
TGGTAACCACATAGAGGTAA+GGG | + | chr3_3:83776850-83776869 | None:intergenic | 40.0% | |
GTTAATGTTAGCATGTGCAC+CGG | + | chr3_3:83776917-83776936 | None:intergenic | 40.0% | |
! | TATGTTACAGCAAGCTTGCT+AGG | + | chr3_3:83776955-83776974 | None:intergenic | 40.0% |
CAGCCATTATGTTGTGACTT+TGG | + | chr3_3:83777169-83777188 | None:intergenic | 40.0% | |
CAACATAATGGCTGCTTGAT+AGG | - | chr3_3:83777175-83777194 | Msa0478920:intron | 40.0% | |
AGTACCTTTGTGCAGGATTA+TGG | - | chr3_3:83777573-83777592 | Msa0478920:intron | 40.0% | |
TCTTCCATAATCCTGCACAA+AGG | + | chr3_3:83777580-83777599 | None:intergenic | 40.0% | |
TTTGTGCAGGATTATGGAAG+AGG | - | chr3_3:83777579-83777598 | Msa0478920:intron | 40.0% | |
AGAGGAGAGCAACTCTAATT+TGG | - | chr3_3:83777597-83777616 | Msa0478920:intron | 40.0% | |
AGGACAAACTTTGCTCTTAG+GGG | + | chr3_3:83777638-83777657 | None:intergenic | 40.0% | |
CAGGACAAACTTTGCTCTTA+GGG | + | chr3_3:83777639-83777658 | None:intergenic | 40.0% | |
ACAGGACAAACTTTGCTCTT+AGG | + | chr3_3:83777640-83777659 | None:intergenic | 40.0% | |
TGAATAAGTTTCCGGCATAC+AGG | + | chr3_3:83777658-83777677 | None:intergenic | 40.0% | |
!! | TAGAGGTCTCTAAAACTGCA+CGG | - | chr3_3:83777753-83777772 | Msa0478920:CDS | 40.0% |
TAATTGTCCGCAATGTCACT+AGG | - | chr3_3:83777818-83777837 | Msa0478920:CDS | 40.0% | |
ATCACACTTTAATCTCTCGG+AGG | + | chr3_3:83778223-83778242 | None:intergenic | 40.0% | |
! | GAGAGAAGCACATGAGAAAA+AGG | + | chr3_3:83778263-83778282 | None:intergenic | 40.0% |
TGCTTCTCTCTCTTGATGAA+TGG | - | chr3_3:83778273-83778292 | Msa0478920:intron | 40.0% | |
! | CCCAATTTAGTCGTGCATTT+TGG | - | chr3_3:83778350-83778369 | Msa0478920:intron | 40.0% |
GCCAAAATGCACGACTAAAT+TGG | + | chr3_3:83778354-83778373 | None:intergenic | 40.0% | |
ATGAAGGAACCAATGATGTC+TGG | + | chr3_3:83778394-83778413 | None:intergenic | 40.0% | |
!! | GACATCATTGGTTCCTTCAT+TGG | - | chr3_3:83778394-83778413 | Msa0478920:intron | 40.0% |
GTAGTGTTAGGCTAACTCTT+AGG | - | chr3_3:83778628-83778647 | Msa0478920:five_prime_UTR | 40.0% | |
AGGACCATAGTACTCTTCAT+AGG | - | chr3_3:83778648-83778667 | Msa0478920:five_prime_UTR | 40.0% | |
GATCTCTAATGTGGAGCAAT+AGG | - | chr3_3:83778675-83778694 | Msa0478920:five_prime_UTR | 40.0% | |
GTTCCAGTCAAATCAATCGT+TGG | + | chr3_3:83778709-83778728 | None:intergenic | 40.0% | |
AGGCCTTTAACTATGCGTAT+TGG | - | chr3_3:83779029-83779048 | Msa0478920:five_prime_UTR | 40.0% | |
GTGAACTTGGCCAGTTAATT+TGG | - | chr3_3:83779150-83779169 | Msa0478920:five_prime_UTR | 40.0% | |
! | GATCATGTGTTGACAGCCAT+CGG | - | chr3_3:83774967-83774986 | Msa0478920:intron | 45.0% |
GCAAATGCAGAAGTTACCGA+TGG | + | chr3_3:83774986-83775005 | None:intergenic | 45.0% | |
! | CTATTGGTGCTTCTCATTGG+AGG | - | chr3_3:83775087-83775106 | Msa0478920:intron | 45.0% |
!! | CGATGGCTATTGGTTCACAT+AGG | - | chr3_3:83775145-83775164 | Msa0478920:intron | 45.0% |
TCACATAGGTTGTCTCAGCA+AGG | - | chr3_3:83775159-83775178 | Msa0478920:intron | 45.0% | |
CATTGAGGAAATGGCTGCAA+TGG | - | chr3_3:83775206-83775225 | Msa0478920:intron | 45.0% | |
TTGGTCCGAGCATATCCAAA+CGG | + | chr3_3:83775512-83775531 | None:intergenic | 45.0% | |
TGGATATGCTCGGACCAAAA+TGG | - | chr3_3:83775514-83775533 | Msa0478920:intron | 45.0% | |
CAGAGTTGTACAGACCAGAA+TGG | + | chr3_3:83776086-83776105 | None:intergenic | 45.0% | |
TTCTGGTCTGTACAACTCTG+AGG | - | chr3_3:83776086-83776105 | Msa0478920:intron | 45.0% | |
AAGGGAAATGCCTTCTGTTC+AGG | - | chr3_3:83776169-83776188 | Msa0478920:intron | 45.0% | |
GAAATTGAAGGAGAGGACTG+TGG | - | chr3_3:83776274-83776293 | Msa0478920:intron | 45.0% | |
GTGCACGTTACATAACTGAC+AGG | + | chr3_3:83776464-83776483 | None:intergenic | 45.0% | |
ATTCACACAGGAAGATGGGT+TGG | + | chr3_3:83776802-83776821 | None:intergenic | 45.0% | |
GTGGTAACCACATAGAGGTA+AGG | + | chr3_3:83776851-83776870 | None:intergenic | 45.0% | |
!!! | CTTCTTGTTTTGCTAAGCGC+AGG | + | chr3_3:83776981-83777000 | None:intergenic | 45.0% |
TTGTGCACAGTCATAGCAAG+TGG | + | chr3_3:83777377-83777396 | None:intergenic | 45.0% | |
! | CTTGCTATGACTGTGCACAA+AGG | - | chr3_3:83777377-83777396 | Msa0478920:CDS | 45.0% |
! | CATACGCGAGACTCTGATTT+TGG | - | chr3_3:83777445-83777464 | Msa0478920:intron | 45.0% |
ACAAACTTTGCTCTTAGGGG+TGG | + | chr3_3:83777635-83777654 | None:intergenic | 45.0% | |
GCAAAGTTTGTCCTGTATGC+CGG | - | chr3_3:83777644-83777663 | Msa0478920:intron | 45.0% | |
ATTACGGCCTAGTGACATTG+CGG | + | chr3_3:83777828-83777847 | None:intergenic | 45.0% | |
TGCAGCCAAAATGCAGAAAC+AGG | + | chr3_3:83778045-83778064 | None:intergenic | 45.0% | |
ACACATGAGAGGGTAAAGTG+TGG | + | chr3_3:83778306-83778325 | None:intergenic | 45.0% | |
!! | GACCCAACGATTGATTTGAC+TGG | - | chr3_3:83778703-83778722 | Msa0478920:five_prime_UTR | 45.0% |
TATACAGCTAGATTCGCCGA+TGG | - | chr3_3:83778975-83778994 | Msa0478920:five_prime_UTR | 45.0% | |
!! | TATGCGTATTGGTGTTGGCA+AGG | - | chr3_3:83779040-83779059 | Msa0478920:five_prime_UTR | 45.0% |
! | CTATACTTGCGGCGCTGAAT+AGG | + | chr3_3:83775051-83775070 | None:intergenic | 50.0% |
CTATTCAGCGCCGCAAGTAT+AGG | - | chr3_3:83775049-83775068 | Msa0478920:CDS | 50.0% | |
TGAGGAAATGGCTGCAATGG+TGG | - | chr3_3:83775209-83775228 | Msa0478920:intron | 50.0% | |
TTGTCACACTCTGAATCCGC+AGG | - | chr3_3:83775251-83775270 | Msa0478920:intron | 50.0% | |
GGAAATGCCTTCTGTTCAGG+AGG | - | chr3_3:83776172-83776191 | Msa0478920:intron | 50.0% | |
AATGCCTTCTGTTCAGGAGG+TGG | - | chr3_3:83776175-83776194 | Msa0478920:intron | 50.0% | |
GAAGGAGAGGACTGTGGAAA+TGG | - | chr3_3:83776280-83776299 | Msa0478920:intron | 50.0% | |
CCACTGTGGTAACCACATAG+AGG | + | chr3_3:83776856-83776875 | None:intergenic | 50.0% | |
CCTCTATGTGGTTACCACAG+TGG | - | chr3_3:83776853-83776872 | Msa0478920:intron | 50.0% | |
GCGACTCACAACCTTCTCTT+GGG | - | chr3_3:83776885-83776904 | Msa0478920:intron | 50.0% | |
ACCTTCTCTTGGGTAGTGAC+CGG | - | chr3_3:83776895-83776914 | Msa0478920:intron | 50.0% | |
CAGTCATAGCAAGTGGCACA+AGG | + | chr3_3:83777370-83777389 | None:intergenic | 50.0% | |
GCATCCACCTCCTGAACAGA+AGG | + | chr3_3:83776182-83776201 | None:intergenic | 55.0% | |
GGACTGCCCTTACCTCTATG+TGG | - | chr3_3:83776841-83776860 | Msa0478920:intron | 55.0% | |
! | GTCGCGAGAGTTTTCCACTG+TGG | + | chr3_3:83776870-83776889 | None:intergenic | 55.0% |
CGCGACTCACAACCTTCTCT+TGG | - | chr3_3:83776884-83776903 | Msa0478920:intron | 55.0% | |
ACCGGTCACTACCCAAGAGA+AGG | + | chr3_3:83776899-83776918 | None:intergenic | 55.0% | |
CAGCGCCGCAAGTATAGGAG+TGG | - | chr3_3:83775054-83775073 | Msa0478920:intron | 60.0% | |
GGCTGCAATGGTGGCTGCAA+TGG | - | chr3_3:83775218-83775237 | Msa0478920:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 83774814 | 83779226 | 83774814 | ID=Msa0478920;Name=Msa0478920 |
chr3_3 | mRNA | 83774814 | 83779226 | 83774814 | ID=Msa0478920-mRNA-1;Parent=Msa0478920;Name=Msa0478920-mRNA-1;_AED=0.27;_eAED=0.27;_QI=922|0.75|0.8|1|0.5|0.4|5|0|115 |
chr3_3 | exon | 83774814 | 83774840 | 83774814 | ID=Msa0478920-mRNA-1:exon:23652;Parent=Msa0478920-mRNA-1 |
chr3_3 | exon | 83774979 | 83775071 | 83774979 | ID=Msa0478920-mRNA-1:exon:23651;Parent=Msa0478920-mRNA-1 |
chr3_3 | exon | 83777335 | 83777424 | 83777335 | ID=Msa0478920-mRNA-1:exon:23650;Parent=Msa0478920-mRNA-1 |
chr3_3 | exon | 83777730 | 83778005 | 83777730 | ID=Msa0478920-mRNA-1:exon:23649;Parent=Msa0478920-mRNA-1 |
chr3_3 | exon | 83778446 | 83779226 | 83778446 | ID=Msa0478920-mRNA-1:exon:23648;Parent=Msa0478920-mRNA-1 |
chr3_3 | five_prime_UTR | 83778446 | 83779226 | 83778446 | ID=Msa0478920-mRNA-1:five_prime_utr;Parent=Msa0478920-mRNA-1 |
chr3_3 | five_prime_UTR | 83777865 | 83778005 | 83777865 | ID=Msa0478920-mRNA-1:five_prime_utr;Parent=Msa0478920-mRNA-1 |
chr3_3 | CDS | 83777730 | 83777864 | 83777730 | ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1 |
chr3_3 | CDS | 83777335 | 83777424 | 83777335 | ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1 |
chr3_3 | CDS | 83774979 | 83775071 | 83774979 | ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1 |
chr3_3 | CDS | 83774814 | 83774840 | 83774814 | ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1 |
Gene Sequence |
Protein sequence |