AlfalfaGEDB | Msa0478920

M. sativa cultivar zhongmu-4 / Msa0478920

KEGG: K11548
GO: GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047
PFAM: PF00254.31

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478920	KEH20715.1	96.000	75	3	0	1	75	179	253	5.52e-39	145

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478920	sp\|Q8RXJ0\|NUF2_ARATH	52.000	75	36	0	1	75	174	248	2.17e-20	87.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478920	A0A072U4F7	96.000	75	3	0	1	75	179	253	2.64e-39	145

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0117770	Msa0478920	0.806200	9.234817e-50	-8.615850e-47
Msa0188830	Msa0478920	0.805490	1.301531e-49	-8.615850e-47
Msa0201070	Msa0478920	0.807744	4.353095e-50	-8.615850e-47
Msa0288100	Msa0478920	0.812258	4.641183e-51	-8.615850e-47
Msa0309020	Msa0478920	0.823785	1.149046e-53	-8.615850e-47
Msa0478920	Msa0478960	0.971951	5.593929e-134	-8.615850e-47
Msa0478920	Msa0479010	0.953790	1.257970e-111	-8.615850e-47
Msa0478920	Msa0843260	0.801248	9.846714e-49	-8.615850e-47
Msa0478920	Msa0977360	0.806678	7.321836e-50	-8.615850e-47
Msa0478920	Msa1228590	0.805796	1.122882e-49	-8.615850e-47

Showing 1 to 10 of 13 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478920	MtrunA17_Chr8g0380721	96.000	75	3	0	1	75	179	253	5.68e-43	145
Msa0478920	MtrunA17_Chr4g0025011	68.085	94	21	1	1	94	77	161	2.29e-36	121
Msa0478920	MtrunA17_Chr8g0380701	80.000	75	15	0	1	75	152	226	1.92e-35	122
Msa0478920	MtrunA17_Chr8g0382711	91.176	34	3	0	74	107	111	144	2.14e-16	71.6

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478920	AT1G61000.1	52.000	75	36	1	75	174	248	2.21e-21	87.8
Msa0478920	AT4G39710.2	88.235	34	4	74	107	115	148	2.37e-15	68.6
Msa0478920	AT4G39710.1	88.235	34	4	74	107	115	148	3.83e-15	68.6
Msa0478920	AT4G39710.3	88.235	34	4	74	107	115	148	3.83e-15	68.6

Showing 1 to 4 of 4 entries

Previous1Next

Find 72 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTTGGCATTGCAAT+AGG	0.398141	3_3:+83778904	None:intergenic
AAAGAGAATGATAGTCATTG+AGG	0.526397	3_3:-83778827	Msa0478920:five_prime_UTR
AAATGGCTGATTAAGAGTTA+AGG	0.474751	3_3:-83778487	Msa0478920:five_prime_UTR
AACAACAGTTATACTAAGGT+TGG	0.501460	3_3:+83778742	None:intergenic
AACCTTAGTATAACTGTTGT+TGG	0.383313	3_3:-83778740	Msa0478920:five_prime_UTR
AAGGGAAATGCCTTCTGTTC+AGG	0.323153	3_3:-83777849	Msa0478920:exon
AAGTACTATAAAGAAATTGA+AGG	0.472617	3_3:-83777756	Msa0478920:CDS
AATCTATTGGTGCTTCTCAT+TGG	0.394864	3_3:-83778934	Msa0478920:five_prime_UTR
AATGACTATCATTCTCTTTG+TGG	0.360858	3_3:+83778831	None:intergenic
AATGATACCTGTACTTTATC+AGG	0.298393	3_3:+83777327	None:intergenic

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGACTATCATTCTCTTTG+TGG	+	chr3_3:83775190-83775209	None:intergenic	30.0%
AAAGAGAATGATAGTCATTG+AGG	-	chr3_3:83775191-83775210	Msa0478920:intron	30.0%
AATGATAGTCATTGAGGAAA+TGG	-	chr3_3:83775197-83775216	Msa0478920:intron	30.0%
AACAACAGTTATACTAAGGT+TGG	+	chr3_3:83775279-83775298	None:intergenic	30.0%
AACCTTAGTATAACTGTTGT+TGG	-	chr3_3:83775278-83775297	Msa0478920:intron	30.0%
TACTATCACAATTCAGACAT+CGG	+	chr3_3:83775374-83775393	None:intergenic	30.0%
GTCTGAATTGTGATAGTATT+CGG	-	chr3_3:83775376-83775395	Msa0478920:intron	30.0%
AAATGGCTGATTAAGAGTTA+AGG	-	chr3_3:83775531-83775550	Msa0478920:intron	30.0%
GTAGAGGTTAAAAAGATTTC+AGG	-	chr3_3:83775682-83775701	Msa0478920:intron	30.0%
AATTAATCATGTTCAGTGGA+TGG	+	chr3_3:83775767-83775786	None:intergenic	30.0%

Showing 1 to 10 of 233 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	83774814	83779226	83774814	ID=Msa0478920;Name=Msa0478920
chr3_3	mRNA	83774814	83779226	83774814	ID=Msa0478920-mRNA-1;Parent=Msa0478920;Name=Msa0478920-mRNA-1;_AED=0.27;_eAED=0.27;_QI=922\|0.75\|0.8\|1\|0.5\|0.4\|5\|0\|115
chr3_3	exon	83774814	83774840	83774814	ID=Msa0478920-mRNA-1:exon:23652;Parent=Msa0478920-mRNA-1
chr3_3	exon	83774979	83775071	83774979	ID=Msa0478920-mRNA-1:exon:23651;Parent=Msa0478920-mRNA-1
chr3_3	exon	83777335	83777424	83777335	ID=Msa0478920-mRNA-1:exon:23650;Parent=Msa0478920-mRNA-1
chr3_3	exon	83777730	83778005	83777730	ID=Msa0478920-mRNA-1:exon:23649;Parent=Msa0478920-mRNA-1
chr3_3	exon	83778446	83779226	83778446	ID=Msa0478920-mRNA-1:exon:23648;Parent=Msa0478920-mRNA-1
chr3_3	five_prime_UTR	83778446	83779226	83778446	ID=Msa0478920-mRNA-1:five_prime_utr;Parent=Msa0478920-mRNA-1
chr3_3	five_prime_UTR	83777865	83778005	83777865	ID=Msa0478920-mRNA-1:five_prime_utr;Parent=Msa0478920-mRNA-1
chr3_3	CDS	83777730	83777864	83777730	ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1
chr3_3	CDS	83777335	83777424	83777335	ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1
chr3_3	CDS	83774979	83775071	83774979	ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1
chr3_3	CDS	83774814	83774840	83774814	ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1

Gene Sequence	>Msa0478920 ATGCCTTCTGTTCAGGAGGTGGATGCAAAAGTTAAAGAGTTACGTCAAACTATTGCGAACCTGAACAATAAACAGATGTCATTGAGAAGTACTATAAAGAAATTGAAGGAGAGGACTGTGGAAATGGATGATAAGATTTCTGGTGCTGAATATAAACTGGTACAAAATGTTCAAGAGCATGGAAATCTACTTTCAAAAATTGCTCAATCGCCTGATAAAGTACAGATTCACTATACAGCTAGATTCGCCGATGGAATAGTATTTGATAGTAGTTATAAACGTGCTAGGCCTTTAACTATGCGTATTGGTGTTGGCAAGATGTTCCTTTATCAAATGCTCTGTGGA
Protein sequence	>Msa0478920 MPSVQEVDAKVKELRQTIANLNNKQMSLRSTIKKLKERTVEMDDKISGAEYKLVQNVQEHGNLLSKIAQSPDKVQIHYTARFADGIVFDSSYKRARPLTMRIGVGKMFLYQMLCG