AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478920 MtrunA17_Chr8g0380721 96.000 75 3 0 1 75 179 253 5.68e-43 145
Msa0478920 MtrunA17_Chr4g0025011 68.085 94 21 1 1 94 77 161 2.29e-36 121
Msa0478920 MtrunA17_Chr8g0380701 80.000 75 15 0 1 75 152 226 1.92e-35 122
Msa0478920 MtrunA17_Chr8g0382711 91.176 34 3 0 74 107 111 144 2.14e-16 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478920 AT1G61000.1 52.000 75 36 0 1 75 174 248 2.21e-21 87.8
Msa0478920 AT4G39710.2 88.235 34 4 0 74 107 115 148 2.37e-15 68.6
Msa0478920 AT4G39710.1 88.235 34 4 0 74 107 115 148 3.83e-15 68.6
Msa0478920 AT4G39710.3 88.235 34 4 0 74 107 115 148 3.83e-15 68.6

Find 72 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTCTTAATCAGCCATTT+TGG 0.249434 3_3:+83778490 None:intergenic
ATGACATCTGTTTATTGTTC+AGG 0.250147 3_3:+83777783 None:intergenic
TGCATTTGCTCAATTGCTTT+GGG 0.264099 3_3:-83779021 Msa0478920:five_prime_UTR
GGCAAATTGTGCAGATAAAA+TGG 0.274667 3_3:-83777983 Msa0478920:five_prime_UTR
CTGCATTTGCTCAATTGCTT+TGG 0.275397 3_3:-83779022 Msa0478920:five_prime_UTR
GTGCTGGAAAATTCTTCTTT+TGG 0.284743 3_3:+83778700 None:intergenic
AATGATACCTGTACTTTATC+AGG 0.298393 3_3:+83777327 None:intergenic
CTGTAGATGATTTAAATGTT+TGG 0.301649 3_3:-83778582 Msa0478920:five_prime_UTR
GTCTGAATTGTGATAGTATT+CGG 0.311465 3_3:-83778642 Msa0478920:five_prime_UTR
ACACCAATACGCATAGTTAA+AGG 0.322478 3_3:+83774986 None:intergenic
AAGGGAAATGCCTTCTGTTC+AGG 0.323153 3_3:-83777849 Msa0478920:exon
AATGACTATCATTCTCTTTG+TGG 0.360858 3_3:+83778831 None:intergenic
CTATACTTGCGGCGCTGAAT+AGG 0.365832 3_3:+83778970 None:intergenic
AACCTTAGTATAACTGTTGT+TGG 0.383313 3_3:-83778740 Msa0478920:five_prime_UTR
AATGATAGTCATTGAGGAAA+TGG 0.392182 3_3:-83778821 Msa0478920:five_prime_UTR
AATCTATTGGTGCTTCTCAT+TGG 0.394864 3_3:-83778934 Msa0478920:five_prime_UTR
TGGATATGCTCGGACCAAAA+TGG 0.396223 3_3:-83778504 Msa0478920:five_prime_UTR
TGTTTGGAACAATATATCTA+AGG 0.397747 3_3:-83778566 Msa0478920:five_prime_UTR
AAAACTGTTGGCATTGCAAT+AGG 0.398141 3_3:+83778904 None:intergenic
GACTGTGGAAATGGATGATA+AGG 0.411995 3_3:-83777729 Msa0478920:intron
TTCTGGTGCTGAATATAAAC+TGG 0.412690 3_3:-83777400 Msa0478920:CDS
CTATTCAGCGCCGCAAGTAT+AGG 0.427697 3_3:-83778969 Msa0478920:five_prime_UTR
TTGTCAGTTACGATGGCTAT+TGG 0.429901 3_3:-83778883 Msa0478920:five_prime_UTR
CTCCACAGAGCATTTGATAA+AGG 0.432915 3_3:+83774813 None:intergenic
GAAGGAGAGGACTGTGGAAA+TGG 0.440042 3_3:-83777738 Msa0478920:CDS
CGATTCTGCATGTTAAAGTC+TGG 0.442759 3_3:+83778453 None:intergenic
GATATTGTACAATTCTTGAA+AGG 0.450055 3_3:-83777868 Msa0478920:five_prime_UTR
GGCTGCAATGGTGGCTGCAA+TGG 0.454503 3_3:-83778800 Msa0478920:five_prime_UTR
AAGTACTATAAAGAAATTGA+AGG 0.472617 3_3:-83777756 Msa0478920:CDS
AAATGGCTGATTAAGAGTTA+AGG 0.474751 3_3:-83778487 Msa0478920:five_prime_UTR
CTATTGGTGCTTCTCATTGG+AGG 0.489832 3_3:-83778931 Msa0478920:five_prime_UTR
ATATTGTACAATTCTTGAAA+GGG 0.490218 3_3:-83777867 Msa0478920:five_prime_UTR
AACAACAGTTATACTAAGGT+TGG 0.501460 3_3:+83778742 None:intergenic
AGGCCTTTAACTATGCGTAT+TGG 0.506428 3_3:-83774989 Msa0478920:CDS
TAGAAAAGAGCAAAGAGTGC+TGG 0.507946 3_3:+83778684 None:intergenic
CTCCAACAACAGTTATACTA+AGG 0.511684 3_3:+83778738 None:intergenic
TATTGGTGCTTCTCATTGGA+GGG 0.514746 3_3:-83778930 Msa0478920:five_prime_UTR
TTAACTATGCGTATTGGTGT+TGG 0.521341 3_3:-83774983 Msa0478920:CDS
AAAGAGAATGATAGTCATTG+AGG 0.526397 3_3:-83778827 Msa0478920:five_prime_UTR
ATAGTAGTTATAAACGTGCT+AGG 0.527374 3_3:-83775009 Msa0478920:CDS
GATCATGTGTTGACAGCCAT+CGG 0.527698 3_3:-83779051 Msa0478920:five_prime_UTR
AATGCCTTCTGTTCAGGAGG+TGG 0.532743 3_3:-83777843 Msa0478920:CDS
GTACAAAATGTTCAAGAGCA+TGG 0.533679 3_3:-83777378 Msa0478920:CDS
GAGTGGAATTGACAATCTAT+TGG 0.533730 3_3:-83778947 Msa0478920:five_prime_UTR
ACTATCACAATTCAGACATC+GGG 0.534239 3_3:+83778648 None:intergenic
TTATTCCGTTTGGATATGCT+CGG 0.539101 3_3:-83778514 Msa0478920:five_prime_UTR
CAATTCCACTCCTATACTTG+CGG 0.549747 3_3:+83778959 None:intergenic
GCATCCACCTCCTGAACAGA+AGG 0.551705 3_3:+83777839 None:intergenic
AATTGTACAATATCAACTCC+AGG 0.560612 3_3:+83777877 None:intergenic
TTGGTCCGAGCATATCCAAA+CGG 0.569946 3_3:+83778509 None:intergenic
CGATGGCTATTGGTTCACAT+AGG 0.572428 3_3:-83778873 Msa0478920:five_prime_UTR
ATCGTAACTGACAAAACTGT+TGG 0.576198 3_3:+83778892 None:intergenic
TACTATCACAATTCAGACAT+CGG 0.579861 3_3:+83778647 None:intergenic
TTGTCACACTCTGAATCCGC+AGG 0.583371 3_3:-83778767 Msa0478920:five_prime_UTR
ACTATCAAATACTATTCCAT+CGG 0.594477 3_3:+83775027 None:intergenic
CTATAAAGAAATTGAAGGAG+AGG 0.594531 3_3:-83777751 Msa0478920:CDS
GAAATTGAAGGAGAGGACTG+TGG 0.597307 3_3:-83777744 Msa0478920:CDS
TATACTAAGGTTGGATCCTG+CGG 0.606504 3_3:+83778751 None:intergenic
TGAGGAAATGGCTGCAATGG+TGG 0.607777 3_3:-83778809 Msa0478920:five_prime_UTR
CATTGAGGAAATGGCTGCAA+TGG 0.609889 3_3:-83778812 Msa0478920:five_prime_UTR
TCAATCGCCTGATAAAGTAC+AGG 0.611191 3_3:-83777334 Msa0478920:intron
TTCCTTTATCAAATGCTCTG+TGG 0.615221 3_3:-83774815 Msa0478920:CDS
CAGAGTTGTACAGACCAGAA+TGG 0.623697 3_3:+83777935 None:intergenic
TATGCGTATTGGTGTTGGCA+AGG 0.624457 3_3:-83774978 Msa0478920:intron
TCAACACATGATCAAAGCCA+TGG 0.635234 3_3:+83779061 None:intergenic
CAGCGCCGCAAGTATAGGAG+TGG 0.639208 3_3:-83778964 Msa0478920:five_prime_UTR
GGAAATGCCTTCTGTTCAGG+AGG 0.641002 3_3:-83777846 Msa0478920:exon
TAACATGCAGAATCGACAAG+AGG 0.642308 3_3:-83778445 Msa0478920:intron
TCACATAGGTTGTCTCAGCA+AGG 0.643329 3_3:-83778859 Msa0478920:five_prime_UTR
GCAAATGCAGAAGTTACCGA+TGG 0.680742 3_3:+83779035 None:intergenic
TATACAGCTAGATTCGCCGA+TGG 0.689447 3_3:-83775043 Msa0478920:CDS
TTCTGGTCTGTACAACTCTG+AGG 0.704995 3_3:-83777932 Msa0478920:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATTATGTAATATGA+AGG + chr3_3:83777053-83777072 None:intergenic 10.0%
!! TTTATTGTATTAAAAAATTG+TGG - chr3_3:83777067-83777086 Msa0478920:intron 10.0%
!! ATGTTTATGTGAATAATTAA+TGG - chr3_3:83776420-83776439 Msa0478920:intron 15.0%
!! ATATATATTAATTCATGTGT+TGG - chr3_3:83776522-83776541 Msa0478920:intron 15.0%
!!! ATATTGTAAATGTGTTTTAT+TGG - chr3_3:83776820-83776839 Msa0478920:intron 15.0%
!!! GTATAATACAAAAATTTTAG+AGG - chr3_3:83777736-83777755 Msa0478920:CDS 15.0%
!! ATAATTAAGATGAAACTAAT+TGG + chr3_3:83778422-83778441 None:intergenic 15.0%
!!! TCGTTTTCTTTTAATTATTT+AGG - chr3_3:83778732-83778751 Msa0478920:five_prime_UTR 15.0%
!!! CGATACTATTTATTTTTTTA+TGG - chr3_3:83778825-83778844 Msa0478920:five_prime_UTR 15.0%
!!! ATCCAACTTTTTGATATATT+AGG + chr3_3:83774845-83774864 None:intergenic 20.0%
!! GGTAAATGAATATTACAATT+TGG + chr3_3:83775746-83775765 None:intergenic 20.0%
!!! ATTAATTGCATATTTGAAGT+CGG - chr3_3:83775780-83775799 Msa0478920:intron 20.0%
!! ATCAAATTTCAACATCAATT+TGG + chr3_3:83775814-83775833 None:intergenic 20.0%
!! AAAAGAAATCATTAGTATAG+GGG + chr3_3:83776006-83776025 None:intergenic 20.0%
!! CAAAAGAAATCATTAGTATA+GGG + chr3_3:83776007-83776026 None:intergenic 20.0%
!! TCAAAAGAAATCATTAGTAT+AGG + chr3_3:83776008-83776027 None:intergenic 20.0%
!!! AATGATTTCTTTTGAATTGT+AGG - chr3_3:83776013-83776032 Msa0478920:intron 20.0%
!!! ATGATTTCTTTTGAATTGTA+GGG - chr3_3:83776014-83776033 Msa0478920:intron 20.0%
!! ATATTGTACAATTCTTGAAA+GGG - chr3_3:83776151-83776170 Msa0478920:intron 20.0%
!! AAGTACTATAAAGAAATTGA+AGG - chr3_3:83776262-83776281 Msa0478920:intron 20.0%
!! TTTATGTGAATAATTAATGG+TGG - chr3_3:83776423-83776442 Msa0478920:intron 20.0%
!! TAGTTAAGTAGTTATTTAAG+AGG - chr3_3:83777209-83777228 Msa0478920:intron 20.0%
!!! TATTTAAGAGGTTAGTTAAT+TGG - chr3_3:83777221-83777240 Msa0478920:intron 20.0%
!!! TTAGTAGATTTTTCATGAAA+AGG - chr3_3:83777255-83777274 Msa0478920:intron 20.0%
!! TAAAAAGATTATCAACAGTT+AGG - chr3_3:83777702-83777721 Msa0478920:intron 20.0%
!!! CATTGAGTTCATTTTATTTA+TGG - chr3_3:83777942-83777961 Msa0478920:five_prime_UTR 20.0%
!! AATAAGCAGGATTATAATTT+GGG + chr3_3:83777988-83778007 None:intergenic 20.0%
!! AAATAAGCAGGATTATAATT+TGG + chr3_3:83777989-83778008 None:intergenic 20.0%
!!! TAATTATTATGATGTTTTCC+TGG - chr3_3:83778435-83778454 Msa0478920:intron 20.0%
!!! TTTTATTTCTTGCTACATTT+TGG - chr3_3:83778598-83778617 Msa0478920:five_prime_UTR 20.0%
! TGCCTAATATATCAAAAAGT+TGG - chr3_3:83774840-83774859 Msa0478920:intron 25.0%
! CTGTAGATGATTTAAATGTT+TGG - chr3_3:83775436-83775455 Msa0478920:intron 25.0%
!! TGTTTGGAACAATATATCTA+AGG - chr3_3:83775452-83775471 Msa0478920:intron 25.0%
! GTTATAGTAGTAATTCTCTT+TGG - chr3_3:83775601-83775620 Msa0478920:intron 25.0%
! TTGTACAAAAGTTGCTAAAA+AGG - chr3_3:83775635-83775654 Msa0478920:intron 25.0%
! CTAACTATTCATTATAGTAG+AGG - chr3_3:83775666-83775685 Msa0478920:intron 25.0%
! AATTTCAACATCAATTTGGA+TGG + chr3_3:83775810-83775829 None:intergenic 25.0%
! TCATTTCACGAAAAATCAAT+AGG - chr3_3:83775856-83775875 Msa0478920:intron 25.0%
! TCTTACTAACGACTTAAAAA+AGG + chr3_3:83775913-83775932 None:intergenic 25.0%
! GATATTGTACAATTCTTGAA+AGG - chr3_3:83776150-83776169 Msa0478920:intron 25.0%
! TAATCTTTACTTCTTGATGT+TGG - chr3_3:83776354-83776373 Msa0478920:intron 25.0%
! AATCTTTACTTCTTGATGTT+GGG - chr3_3:83776355-83776374 Msa0478920:intron 25.0%
!!! TGAATAATTAATGGTGGATT+AGG - chr3_3:83776429-83776448 Msa0478920:intron 25.0%
! ATGAAGGACATAAATTATGT+TGG + chr3_3:83777037-83777056 None:intergenic 25.0%
!! ATGAGCTATTCTTTTATGTT+GGG + chr3_3:83777134-83777153 None:intergenic 25.0%
!! TATGAGCTATTCTTTTATGT+TGG + chr3_3:83777135-83777154 None:intergenic 25.0%
!! AGGTTAGTTAATTGGTTAAT+GGG - chr3_3:83777229-83777248 Msa0478920:intron 25.0%
! ATTCAAACATGCGTTAAAAT+TGG - chr3_3:83777528-83777547 Msa0478920:intron 25.0%
! TTACTCTATGAATAAGTTTC+CGG + chr3_3:83777666-83777685 None:intergenic 25.0%
!!! ATAGTTCTAAATTGCGATTA+CGG + chr3_3:83777844-83777863 None:intergenic 25.0%
! ATCAAAATGAGAAAATAAGC+AGG + chr3_3:83778001-83778020 None:intergenic 25.0%
!!! CATTTTGATACTTGATATCA+TGG - chr3_3:83778012-83778031 Msa0478920:intron 25.0%
!! AAGTTAAAATGTCATTTGAG+TGG - chr3_3:83778188-83778207 Msa0478920:intron 25.0%
!! AGTTAAAATGTCATTTGAGT+GGG - chr3_3:83778189-83778208 Msa0478920:intron 25.0%
! ATGAGAAAAAGGAATTTGAA+TGG + chr3_3:83778252-83778271 None:intergenic 25.0%
! GACAACAACGAAATTATATT+TGG + chr3_3:83778806-83778825 None:intergenic 25.0%
!!! TTTTTTATGGTGTTTCCTTT+AGG - chr3_3:83778838-83778857 Msa0478920:five_prime_UTR 25.0%
! ACTATCAAATACTATTCCAT+CGG + chr3_3:83778994-83779013 None:intergenic 25.0%
! AATTCAAACTCCAAATTAAC+TGG + chr3_3:83779163-83779182 None:intergenic 25.0%
AATGACTATCATTCTCTTTG+TGG + chr3_3:83775190-83775209 None:intergenic 30.0%
AAAGAGAATGATAGTCATTG+AGG - chr3_3:83775191-83775210 Msa0478920:intron 30.0%
AATGATAGTCATTGAGGAAA+TGG - chr3_3:83775197-83775216 Msa0478920:intron 30.0%
AACAACAGTTATACTAAGGT+TGG + chr3_3:83775279-83775298 None:intergenic 30.0%
AACCTTAGTATAACTGTTGT+TGG - chr3_3:83775278-83775297 Msa0478920:intron 30.0%
! TTGCTCTTTTCTATGAAGAT+TGG - chr3_3:83775344-83775363 Msa0478920:intron 30.0%
TACTATCACAATTCAGACAT+CGG + chr3_3:83775374-83775393 None:intergenic 30.0%
GTCTGAATTGTGATAGTATT+CGG - chr3_3:83775376-83775395 Msa0478920:intron 30.0%
! ATGCAGAATTTTATTCCGTT+TGG - chr3_3:83775494-83775513 Msa0478920:intron 30.0%
! TAACTCTTAATCAGCCATTT+TGG + chr3_3:83775531-83775550 None:intergenic 30.0%
AAATGGCTGATTAAGAGTTA+AGG - chr3_3:83775531-83775550 Msa0478920:intron 30.0%
GTAGAGGTTAAAAAGATTTC+AGG - chr3_3:83775682-83775701 Msa0478920:intron 30.0%
AATTAATCATGTTCAGTGGA+TGG + chr3_3:83775767-83775786 None:intergenic 30.0%
ATGCAATTAATCATGTTCAG+TGG + chr3_3:83775771-83775790 None:intergenic 30.0%
TGATTGATCAACAAAAAACC+TGG - chr3_3:83776123-83776142 Msa0478920:intron 30.0%
AATTGTACAATATCAACTCC+AGG + chr3_3:83776144-83776163 None:intergenic 30.0%
ATGACATCTGTTTATTGTTC+AGG + chr3_3:83776238-83776257 None:intergenic 30.0%
CTATAAAGAAATTGAAGGAG+AGG - chr3_3:83776267-83776286 Msa0478920:intron 30.0%
ATCTTTACTTCTTGATGTTG+GGG - chr3_3:83776356-83776375 Msa0478920:intron 30.0%
! TTAATTCATGTGTTGGTACT+TGG - chr3_3:83776529-83776548 Msa0478920:intron 30.0%
AATGATACCTGTACTTTATC+AGG + chr3_3:83776694-83776713 None:intergenic 30.0%
! TACAGGTATCATTTTCATGT+TGG - chr3_3:83776701-83776720 Msa0478920:intron 30.0%
CACATTTACAATATTCACAC+AGG + chr3_3:83776814-83776833 None:intergenic 30.0%
! GAGGTTAGTTAATTGGTTAA+TGG - chr3_3:83777228-83777247 Msa0478920:intron 30.0%
AACAAATTCAGATGTGTCAA+AGG - chr3_3:83777282-83777301 Msa0478920:intron 30.0%
TCGAGTTTAGTAAAATCACT+GGG + chr3_3:83777503-83777522 None:intergenic 30.0%
ATCGAGTTTAGTAAAATCAC+TGG + chr3_3:83777504-83777523 None:intergenic 30.0%
!! AATTGTGATTTTAGCCGTAT+TGG - chr3_3:83777777-83777796 Msa0478920:CDS 30.0%
! GTAATCGCAATTTAGAACTA+TGG - chr3_3:83777843-83777862 Msa0478920:CDS 30.0%
AATATGCAGATTGATGTATG+AGG - chr3_3:83777884-83777903 Msa0478920:five_prime_UTR 30.0%
AATATTGTTAGACGAAGGTT+AGG + chr3_3:83778113-83778132 None:intergenic 30.0%
ATTAGAGGTTCATAATCATG+TGG - chr3_3:83778130-83778149 Msa0478920:intron 30.0%
! GTTAAAATGTCATTTGAGTG+GGG - chr3_3:83778190-83778209 Msa0478920:intron 30.0%
TAGATCACACTTTAATCTCT+CGG + chr3_3:83778226-83778245 None:intergenic 30.0%
!! TGTGTTATTTACACATGAGA+GGG + chr3_3:83778316-83778335 None:intergenic 30.0%
!! ATGTGTTATTTACACATGAG+AGG + chr3_3:83778317-83778336 None:intergenic 30.0%
AATCATAATCCAGACATCAT+TGG - chr3_3:83778382-83778401 Msa0478920:intron 30.0%
AAACTAATTGGAACCAATGA+AGG + chr3_3:83778410-83778429 None:intergenic 30.0%
AAGTCTTGATTCATGAAAAG+AGG + chr3_3:83778480-83778499 None:intergenic 30.0%
! TCTTTTCATGAATCAAGACT+TGG - chr3_3:83778479-83778498 Msa0478920:five_prime_UTR 30.0%
!!! TTTGGTTTTGTTGTAGTGTT+AGG - chr3_3:83778616-83778635 Msa0478920:five_prime_UTR 30.0%
CAACGAAATTATATTTGGAC+TGG + chr3_3:83778801-83778820 None:intergenic 30.0%
ATAGTAGTTATAAACGTGCT+AGG - chr3_3:83779009-83779028 Msa0478920:five_prime_UTR 30.0%
! GAACTGCAATTTTATGTCCA+TGG - chr3_3:83774940-83774959 Msa0478920:intron 35.0%
TGCATTTGCTCAATTGCTTT+GGG - chr3_3:83774997-83775016 Msa0478920:CDS 35.0%
GAGTGGAATTGACAATCTAT+TGG - chr3_3:83775071-83775090 Msa0478920:intron 35.0%
! AATCTATTGGTGCTTCTCAT+TGG - chr3_3:83775084-83775103 Msa0478920:intron 35.0%
AAAACTGTTGGCATTGCAAT+AGG + chr3_3:83775117-83775136 None:intergenic 35.0%
ATCGTAACTGACAAAACTGT+TGG + chr3_3:83775129-83775148 None:intergenic 35.0%
!! AACAGTTTTGTCAGTTACGA+TGG - chr3_3:83775128-83775147 Msa0478920:intron 35.0%
CTCCAACAACAGTTATACTA+AGG + chr3_3:83775283-83775302 None:intergenic 35.0%
! GGAAAATTCTTCTTTTGGCA+AGG + chr3_3:83775316-83775335 None:intergenic 35.0%
! GTGCTGGAAAATTCTTCTTT+TGG + chr3_3:83775321-83775340 None:intergenic 35.0%
ACTATCACAATTCAGACATC+GGG + chr3_3:83775373-83775392 None:intergenic 35.0%
TTATTCCGTTTGGATATGCT+CGG - chr3_3:83775504-83775523 Msa0478920:intron 35.0%
AAGTCGTTAGTAAGACTCAT+CGG - chr3_3:83775918-83775937 Msa0478920:intron 35.0%
GCACATTTGTCATGTTATTG+TGG - chr3_3:83775948-83775967 Msa0478920:intron 35.0%
TAGGGGAAAAGTAAGAAAGA+AGG + chr3_3:83775989-83776008 None:intergenic 35.0%
GGCAAATTGTGCAGATAAAA+TGG - chr3_3:83776035-83776054 Msa0478920:intron 35.0%
! AAACGATGCTTTTACCATTC+TGG - chr3_3:83776069-83776088 Msa0478920:intron 35.0%
!!! TGGGGTTTTTGAGTAGTATA+TGG - chr3_3:83776374-83776393 Msa0478920:intron 35.0%
! CAGAAATCTGAGGTAACAAA+AGG + chr3_3:83776603-83776622 None:intergenic 35.0%
! CTTTTGTTACCTCAGATTTC+TGG - chr3_3:83776601-83776620 Msa0478920:intron 35.0%
! TTCTGGTGCTGAATATAAAC+TGG - chr3_3:83776618-83776637 Msa0478920:intron 35.0%
GTACAAAATGTTCAAGAGCA+TGG - chr3_3:83776640-83776659 Msa0478920:intron 35.0%
CAATATTCACACAGGAAGAT+GGG + chr3_3:83776806-83776825 None:intergenic 35.0%
ACAATATTCACACAGGAAGA+TGG + chr3_3:83776807-83776826 None:intergenic 35.0%
ACACCAAAGTCACAACATAA+TGG - chr3_3:83777163-83777182 Msa0478920:intron 35.0%
!! ACTCTGATTTTGGCACAATT+TGG - chr3_3:83777455-83777474 Msa0478920:intron 35.0%
! TAATTAGAGTACCTTTGTGC+AGG - chr3_3:83777566-83777585 Msa0478920:intron 35.0%
ACGGCAAAATACATCCAATA+CGG + chr3_3:83777794-83777813 None:intergenic 35.0%
CATTGCGGACAATTATATCA+CGG + chr3_3:83777813-83777832 None:intergenic 35.0%
!!! ATCATCCTGTTTCTGCATTT+TGG - chr3_3:83778037-83778056 Msa0478920:intron 35.0%
CCTCTAATATTGTTAGACGA+AGG + chr3_3:83778118-83778137 None:intergenic 35.0%
CCTTCGTCTAACAATATTAG+AGG - chr3_3:83778115-83778134 Msa0478920:intron 35.0%
CCAAAATGCACGACTAAATT+GGG + chr3_3:83778353-83778372 None:intergenic 35.0%
! CATATTTTGTTCATGAGACC+AGG + chr3_3:83778456-83778475 None:intergenic 35.0%
GTATAGTGTAACTTCTGCTT+TGG - chr3_3:83778567-83778586 Msa0478920:five_prime_UTR 35.0%
!! TACTCCTATGAAGAGTACTA+TGG + chr3_3:83778655-83778674 None:intergenic 35.0%
ATAGGAGTAGATCTCTAATG+TGG - chr3_3:83778666-83778685 Msa0478920:five_prime_UTR 35.0%
TTCCAGTCAAATCAATCGTT+GGG + chr3_3:83778708-83778727 None:intergenic 35.0%
ACATCAATAAGCTCTCCTAA+AGG + chr3_3:83778856-83778875 None:intergenic 35.0%
ACACCAATACGCATAGTTAA+AGG + chr3_3:83779035-83779054 None:intergenic 35.0%
! TTAACTATGCGTATTGGTGT+TGG - chr3_3:83779035-83779054 Msa0478920:five_prime_UTR 35.0%
! GCTGCTAATTTTTGTGAACT+TGG - chr3_3:83779137-83779156 Msa0478920:five_prime_UTR 35.0%
GATAAAGGAACATCTGCAAA+AGG + chr3_3:83779193-83779212 None:intergenic 35.0%
TTCCTTTATCAAATGCTCTG+TGG - chr3_3:83779203-83779222 Msa0478920:five_prime_UTR 35.0%
TCAACACATGATCAAAGCCA+TGG + chr3_3:83774960-83774979 None:intergenic 40.0%
CTGCATTTGCTCAATTGCTT+TGG - chr3_3:83774996-83775015 Msa0478920:CDS 40.0%
CAATTCCACTCCTATACTTG+CGG + chr3_3:83775062-83775081 None:intergenic 40.0%
! TATTGGTGCTTCTCATTGGA+GGG - chr3_3:83775088-83775107 Msa0478920:intron 40.0%
TTGTCAGTTACGATGGCTAT+TGG - chr3_3:83775135-83775154 Msa0478920:intron 40.0%
TATACTAAGGTTGGATCCTG+CGG + chr3_3:83775270-83775289 None:intergenic 40.0%
! TAGAAAAGAGCAAAGAGTGC+TGG + chr3_3:83775337-83775356 None:intergenic 40.0%
CGATTCTGCATGTTAAAGTC+TGG + chr3_3:83775568-83775587 None:intergenic 40.0%
TAACATGCAGAATCGACAAG+AGG - chr3_3:83775573-83775592 Msa0478920:intron 40.0%
GACTGTGGAAATGGATGATA+AGG - chr3_3:83776289-83776308 Msa0478920:intron 40.0%
TGCACGTTACATAACTGACA+GGG + chr3_3:83776463-83776482 None:intergenic 40.0%
TATTCAGCACCAGAAATCTG+AGG + chr3_3:83776613-83776632 None:intergenic 40.0%
TCAATCGCCTGATAAAGTAC+AGG - chr3_3:83776684-83776703 Msa0478920:intron 40.0%
TGGTAACCACATAGAGGTAA+GGG + chr3_3:83776850-83776869 None:intergenic 40.0%
GTTAATGTTAGCATGTGCAC+CGG + chr3_3:83776917-83776936 None:intergenic 40.0%
! TATGTTACAGCAAGCTTGCT+AGG + chr3_3:83776955-83776974 None:intergenic 40.0%
CAGCCATTATGTTGTGACTT+TGG + chr3_3:83777169-83777188 None:intergenic 40.0%
CAACATAATGGCTGCTTGAT+AGG - chr3_3:83777175-83777194 Msa0478920:intron 40.0%
AGTACCTTTGTGCAGGATTA+TGG - chr3_3:83777573-83777592 Msa0478920:intron 40.0%
TCTTCCATAATCCTGCACAA+AGG + chr3_3:83777580-83777599 None:intergenic 40.0%
TTTGTGCAGGATTATGGAAG+AGG - chr3_3:83777579-83777598 Msa0478920:intron 40.0%
AGAGGAGAGCAACTCTAATT+TGG - chr3_3:83777597-83777616 Msa0478920:intron 40.0%
AGGACAAACTTTGCTCTTAG+GGG + chr3_3:83777638-83777657 None:intergenic 40.0%
CAGGACAAACTTTGCTCTTA+GGG + chr3_3:83777639-83777658 None:intergenic 40.0%
ACAGGACAAACTTTGCTCTT+AGG + chr3_3:83777640-83777659 None:intergenic 40.0%
TGAATAAGTTTCCGGCATAC+AGG + chr3_3:83777658-83777677 None:intergenic 40.0%
!! TAGAGGTCTCTAAAACTGCA+CGG - chr3_3:83777753-83777772 Msa0478920:CDS 40.0%
TAATTGTCCGCAATGTCACT+AGG - chr3_3:83777818-83777837 Msa0478920:CDS 40.0%
ATCACACTTTAATCTCTCGG+AGG + chr3_3:83778223-83778242 None:intergenic 40.0%
! GAGAGAAGCACATGAGAAAA+AGG + chr3_3:83778263-83778282 None:intergenic 40.0%
TGCTTCTCTCTCTTGATGAA+TGG - chr3_3:83778273-83778292 Msa0478920:intron 40.0%
! CCCAATTTAGTCGTGCATTT+TGG - chr3_3:83778350-83778369 Msa0478920:intron 40.0%
GCCAAAATGCACGACTAAAT+TGG + chr3_3:83778354-83778373 None:intergenic 40.0%
ATGAAGGAACCAATGATGTC+TGG + chr3_3:83778394-83778413 None:intergenic 40.0%
!! GACATCATTGGTTCCTTCAT+TGG - chr3_3:83778394-83778413 Msa0478920:intron 40.0%
GTAGTGTTAGGCTAACTCTT+AGG - chr3_3:83778628-83778647 Msa0478920:five_prime_UTR 40.0%
AGGACCATAGTACTCTTCAT+AGG - chr3_3:83778648-83778667 Msa0478920:five_prime_UTR 40.0%
GATCTCTAATGTGGAGCAAT+AGG - chr3_3:83778675-83778694 Msa0478920:five_prime_UTR 40.0%
GTTCCAGTCAAATCAATCGT+TGG + chr3_3:83778709-83778728 None:intergenic 40.0%
AGGCCTTTAACTATGCGTAT+TGG - chr3_3:83779029-83779048 Msa0478920:five_prime_UTR 40.0%
GTGAACTTGGCCAGTTAATT+TGG - chr3_3:83779150-83779169 Msa0478920:five_prime_UTR 40.0%
! GATCATGTGTTGACAGCCAT+CGG - chr3_3:83774967-83774986 Msa0478920:intron 45.0%
GCAAATGCAGAAGTTACCGA+TGG + chr3_3:83774986-83775005 None:intergenic 45.0%
! CTATTGGTGCTTCTCATTGG+AGG - chr3_3:83775087-83775106 Msa0478920:intron 45.0%
!! CGATGGCTATTGGTTCACAT+AGG - chr3_3:83775145-83775164 Msa0478920:intron 45.0%
TCACATAGGTTGTCTCAGCA+AGG - chr3_3:83775159-83775178 Msa0478920:intron 45.0%
CATTGAGGAAATGGCTGCAA+TGG - chr3_3:83775206-83775225 Msa0478920:intron 45.0%
TTGGTCCGAGCATATCCAAA+CGG + chr3_3:83775512-83775531 None:intergenic 45.0%
TGGATATGCTCGGACCAAAA+TGG - chr3_3:83775514-83775533 Msa0478920:intron 45.0%
CAGAGTTGTACAGACCAGAA+TGG + chr3_3:83776086-83776105 None:intergenic 45.0%
TTCTGGTCTGTACAACTCTG+AGG - chr3_3:83776086-83776105 Msa0478920:intron 45.0%
AAGGGAAATGCCTTCTGTTC+AGG - chr3_3:83776169-83776188 Msa0478920:intron 45.0%
GAAATTGAAGGAGAGGACTG+TGG - chr3_3:83776274-83776293 Msa0478920:intron 45.0%
GTGCACGTTACATAACTGAC+AGG + chr3_3:83776464-83776483 None:intergenic 45.0%
ATTCACACAGGAAGATGGGT+TGG + chr3_3:83776802-83776821 None:intergenic 45.0%
GTGGTAACCACATAGAGGTA+AGG + chr3_3:83776851-83776870 None:intergenic 45.0%
!!! CTTCTTGTTTTGCTAAGCGC+AGG + chr3_3:83776981-83777000 None:intergenic 45.0%
TTGTGCACAGTCATAGCAAG+TGG + chr3_3:83777377-83777396 None:intergenic 45.0%
! CTTGCTATGACTGTGCACAA+AGG - chr3_3:83777377-83777396 Msa0478920:CDS 45.0%
! CATACGCGAGACTCTGATTT+TGG - chr3_3:83777445-83777464 Msa0478920:intron 45.0%
ACAAACTTTGCTCTTAGGGG+TGG + chr3_3:83777635-83777654 None:intergenic 45.0%
GCAAAGTTTGTCCTGTATGC+CGG - chr3_3:83777644-83777663 Msa0478920:intron 45.0%
ATTACGGCCTAGTGACATTG+CGG + chr3_3:83777828-83777847 None:intergenic 45.0%
TGCAGCCAAAATGCAGAAAC+AGG + chr3_3:83778045-83778064 None:intergenic 45.0%
ACACATGAGAGGGTAAAGTG+TGG + chr3_3:83778306-83778325 None:intergenic 45.0%
!! GACCCAACGATTGATTTGAC+TGG - chr3_3:83778703-83778722 Msa0478920:five_prime_UTR 45.0%
TATACAGCTAGATTCGCCGA+TGG - chr3_3:83778975-83778994 Msa0478920:five_prime_UTR 45.0%
!! TATGCGTATTGGTGTTGGCA+AGG - chr3_3:83779040-83779059 Msa0478920:five_prime_UTR 45.0%
! CTATACTTGCGGCGCTGAAT+AGG + chr3_3:83775051-83775070 None:intergenic 50.0%
CTATTCAGCGCCGCAAGTAT+AGG - chr3_3:83775049-83775068 Msa0478920:CDS 50.0%
TGAGGAAATGGCTGCAATGG+TGG - chr3_3:83775209-83775228 Msa0478920:intron 50.0%
TTGTCACACTCTGAATCCGC+AGG - chr3_3:83775251-83775270 Msa0478920:intron 50.0%
GGAAATGCCTTCTGTTCAGG+AGG - chr3_3:83776172-83776191 Msa0478920:intron 50.0%
AATGCCTTCTGTTCAGGAGG+TGG - chr3_3:83776175-83776194 Msa0478920:intron 50.0%
GAAGGAGAGGACTGTGGAAA+TGG - chr3_3:83776280-83776299 Msa0478920:intron 50.0%
CCACTGTGGTAACCACATAG+AGG + chr3_3:83776856-83776875 None:intergenic 50.0%
CCTCTATGTGGTTACCACAG+TGG - chr3_3:83776853-83776872 Msa0478920:intron 50.0%
GCGACTCACAACCTTCTCTT+GGG - chr3_3:83776885-83776904 Msa0478920:intron 50.0%
ACCTTCTCTTGGGTAGTGAC+CGG - chr3_3:83776895-83776914 Msa0478920:intron 50.0%
CAGTCATAGCAAGTGGCACA+AGG + chr3_3:83777370-83777389 None:intergenic 50.0%
GCATCCACCTCCTGAACAGA+AGG + chr3_3:83776182-83776201 None:intergenic 55.0%
GGACTGCCCTTACCTCTATG+TGG - chr3_3:83776841-83776860 Msa0478920:intron 55.0%
! GTCGCGAGAGTTTTCCACTG+TGG + chr3_3:83776870-83776889 None:intergenic 55.0%
CGCGACTCACAACCTTCTCT+TGG - chr3_3:83776884-83776903 Msa0478920:intron 55.0%
ACCGGTCACTACCCAAGAGA+AGG + chr3_3:83776899-83776918 None:intergenic 55.0%
CAGCGCCGCAAGTATAGGAG+TGG - chr3_3:83775054-83775073 Msa0478920:intron 60.0%
GGCTGCAATGGTGGCTGCAA+TGG - chr3_3:83775218-83775237 Msa0478920:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 83774814 83779226 83774814 ID=Msa0478920;Name=Msa0478920
chr3_3 mRNA 83774814 83779226 83774814 ID=Msa0478920-mRNA-1;Parent=Msa0478920;Name=Msa0478920-mRNA-1;_AED=0.27;_eAED=0.27;_QI=922|0.75|0.8|1|0.5|0.4|5|0|115
chr3_3 exon 83774814 83774840 83774814 ID=Msa0478920-mRNA-1:exon:23652;Parent=Msa0478920-mRNA-1
chr3_3 exon 83774979 83775071 83774979 ID=Msa0478920-mRNA-1:exon:23651;Parent=Msa0478920-mRNA-1
chr3_3 exon 83777335 83777424 83777335 ID=Msa0478920-mRNA-1:exon:23650;Parent=Msa0478920-mRNA-1
chr3_3 exon 83777730 83778005 83777730 ID=Msa0478920-mRNA-1:exon:23649;Parent=Msa0478920-mRNA-1
chr3_3 exon 83778446 83779226 83778446 ID=Msa0478920-mRNA-1:exon:23648;Parent=Msa0478920-mRNA-1
chr3_3 five_prime_UTR 83778446 83779226 83778446 ID=Msa0478920-mRNA-1:five_prime_utr;Parent=Msa0478920-mRNA-1
chr3_3 five_prime_UTR 83777865 83778005 83777865 ID=Msa0478920-mRNA-1:five_prime_utr;Parent=Msa0478920-mRNA-1
chr3_3 CDS 83777730 83777864 83777730 ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1
chr3_3 CDS 83777335 83777424 83777335 ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1
chr3_3 CDS 83774979 83775071 83774979 ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1
chr3_3 CDS 83774814 83774840 83774814 ID=Msa0478920-mRNA-1:cds;Parent=Msa0478920-mRNA-1
Gene Sequence

>Msa0478920

ATGCCTTCTGTTCAGGAGGTGGATGCAAAAGTTAAAGAGTTACGTCAAACTATTGCGAACCTGAACAATAAACAGATGTCATTGAGAAGTACTATAAAGAAATTGAAGGAGAGGACTGTGGAAATGGATGATAAGATTTCTGGTGCTGAATATAAACTGGTACAAAATGTTCAAGAGCATGGAAATCTACTTTCAAAAATTGCTCAATCGCCTGATAAAGTACAGATTCACTATACAGCTAGATTCGCCGATGGAATAGTATTTGATAGTAGTTATAAACGTGCTAGGCCTTTAACTATGCGTATTGGTGTTGGCAAGATGTTCCTTTATCAAATGCTCTGTGGA

Protein sequence

>Msa0478920

MPSVQEVDAKVKELRQTIANLNNKQMSLRSTIKKLKERTVEMDDKISGAEYKLVQNVQEHGNLLSKIAQSPDKVQIHYTARFADGIVFDSSYKRARPLTMRIGVGKMFLYQMLCG