Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479130 | XP_013462153.1 | 95.928 | 442 | 4 | 1 | 1 | 428 | 1 | 442 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479130 | sp|Q9SB50|AP4M_ARATH | 78.000 | 450 | 77 | 4 | 1 | 428 | 2 | 451 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479130 | B7FLE7 | 95.928 | 442 | 4 | 1 | 1 | 428 | 1 | 442 | 0.0 | 865 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0478840 | Msa0479130 | 0.820512 | 6.595059e-53 | -8.615850e-47 |
| Msa0246910 | Msa0479130 | 0.804005 | 2.658994e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479130 | MtrunA17_Chr3g0141861 | 95.928 | 442 | 4 | 1 | 1 | 428 | 1 | 442 | 0.0 | 865 |
| Msa0479130 | MtrunA17_Chr5g0427331 | 76.940 | 451 | 81 | 3 | 1 | 428 | 1 | 451 | 0.0 | 707 |
| Msa0479130 | MtrunA17_Chr8g0368141 | 33.875 | 431 | 271 | 9 | 3 | 428 | 6 | 427 | 2.75e-79 | 251 |
| Msa0479130 | MtrunA17_Chr5g0413081 | 32.168 | 429 | 281 | 7 | 3 | 428 | 6 | 427 | 9.65e-75 | 239 |
| Msa0479130 | MtrunA17_Chr5g0400501 | 30.612 | 441 | 283 | 8 | 3 | 428 | 6 | 438 | 2.24e-69 | 226 |
| Msa0479130 | MtrunA17_Chr7g0271601 | 28.689 | 366 | 220 | 8 | 1 | 352 | 1 | 339 | 4.39e-41 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479130 | AT4G24550.2 | 78.000 | 450 | 77 | 4 | 1 | 428 | 2 | 451 | 0.0 | 721 |
| Msa0479130 | AT4G24550.3 | 76.267 | 375 | 67 | 4 | 1 | 353 | 2 | 376 | 0.0 | 582 |
| Msa0479130 | AT4G24550.1 | 76.408 | 373 | 66 | 4 | 1 | 351 | 2 | 374 | 0.0 | 577 |
| Msa0479130 | AT1G10730.1 | 34.180 | 433 | 267 | 10 | 3 | 428 | 6 | 427 | 2.86e-75 | 241 |
| Msa0479130 | AT1G60780.1 | 33.643 | 431 | 272 | 9 | 3 | 428 | 6 | 427 | 5.67e-75 | 241 |
| Msa0479130 | AT5G46630.1 | 30.839 | 441 | 282 | 8 | 3 | 428 | 6 | 438 | 6.35e-70 | 228 |
| Msa0479130 | AT5G46630.2 | 29.880 | 415 | 269 | 7 | 3 | 402 | 6 | 413 | 1.07e-61 | 206 |
| Msa0479130 | AT1G56590.1 | 26.234 | 385 | 247 | 8 | 1 | 371 | 1 | 362 | 4.85e-35 | 134 |
Find 81 sgRNAs with CRISPR-Local
Find 380 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCTCCTTCTCTTGTTT+TGG | 0.171794 | 3_3:+83998927 | Msa0479130:CDS |
| GAATTCAGCTCGCACTTTAA+TGG | 0.220209 | 3_3:-84000323 | None:intergenic |
| TTAACAGATTATAGAGGTTC+TGG | 0.279084 | 3_3:+83999926 | Msa0479130:intron |
| AAGTTTCAGCGCTTCCCTTT+TGG | 0.286222 | 3_3:-83998688 | None:intergenic |
| GTACAATTCTTCAAGGCTTC+AGG | 0.327361 | 3_3:+84003045 | Msa0479130:CDS |
| TACTTCCACGTGAAGGTTGC+TGG | 0.335178 | 3_3:+83998874 | Msa0479130:CDS |
| CAAATGAAGAGTTATCTTAC+TGG | 0.345418 | 3_3:+83999767 | Msa0479130:CDS |
| TAATTTGAATAGAATGTAGA+TGG | 0.369326 | 3_3:+83998844 | Msa0479130:intron |
| AATAAATTCAGGAAAATTGC+AGG | 0.382465 | 3_3:+84003616 | Msa0479130:three_prime_UTR |
| CACGTATGCTGAATAAATTC+AGG | 0.385670 | 3_3:+84003605 | Msa0479130:three_prime_UTR |
| ATGAACCTGGTGGTAGGAAG+AGG | 0.417061 | 3_3:+83999532 | Msa0479130:CDS |
| CTTTCCAGAATTTAACTTTG+CGG | 0.419957 | 3_3:-83998715 | None:intergenic |
| TACCTATGTACAATTCTTCA+AGG | 0.431580 | 3_3:+84003038 | Msa0479130:CDS |
| AATGCATTGATTGAAGAAAC+AGG | 0.441393 | 3_3:+84000206 | Msa0479130:CDS |
| AGCGGTACCTGGCATTCGTT+TGG | 0.441964 | 3_3:-83999487 | None:intergenic |
| TTGAGAGCAAGTCGAATCTC+TGG | 0.446053 | 3_3:-83999794 | None:intergenic |
| AAGATAACTCTTCATTTGAA+TGG | 0.449085 | 3_3:-83999762 | None:intergenic |
| ATACTCACCAGTGAGATTGA+TGG | 0.452959 | 3_3:+83999737 | Msa0479130:CDS |
| ATCAATGCATTGATACGAAA+GGG | 0.456820 | 3_3:-84000194 | None:intergenic |
| TGTGCACTCTCAATCACAAT+TGG | 0.466118 | 3_3:-83999348 | None:intergenic |
| GGAAATATTATGAAAGAAGC+CGG | 0.475302 | 3_3:+84002992 | Msa0479130:intron |
| AGATCGTGGTGAAGTCCAAA+AGG | 0.482362 | 3_3:+83998673 | Msa0479130:intron |
| TTCTTCGTGCTTTCTCAAAG+AGG | 0.485213 | 3_3:+83998516 | Msa0479130:CDS |
| TTATCTTTAACAGATTATAG+AGG | 0.492801 | 3_3:+83999920 | Msa0479130:intron |
| CACTTACCAACGATAAAGTT+CGG | 0.495718 | 3_3:-84000012 | None:intergenic |
| CTCAATGAGGACCTGAGTAT+AGG | 0.499920 | 3_3:+83999812 | Msa0479130:CDS |
| CACTTCCTGCATTTACAGCT+CGG | 0.513983 | 3_3:+84000386 | Msa0479130:CDS |
| GTGGTGTGTCCAACCGCTCC+AGG | 0.521414 | 3_3:-84002644 | None:intergenic |
| TACTGACCGAACTTTATCGT+TGG | 0.526906 | 3_3:+84000006 | Msa0479130:CDS |
| GGTCAGTATCAAAACTATCA+AGG | 0.530286 | 3_3:-83999991 | None:intergenic |
| ACTTCCACGTGAAGGTTGCT+GGG | 0.535786 | 3_3:+83998875 | Msa0479130:CDS |
| GAGTTAGAACCTGGAGCGGT+TGG | 0.536387 | 3_3:+84002635 | Msa0479130:CDS |
| GTTATACGATAATTCATGAC+AGG | 0.538530 | 3_3:-84000155 | None:intergenic |
| ATTTGTTTCCTTAAAATCAG+TGG | 0.538623 | 3_3:-84002663 | None:intergenic |
| TAATACCGAGCTGTAAATGC+AGG | 0.540298 | 3_3:-84000391 | None:intergenic |
| ACTGCGTTTGTTGCGAAGCG+TGG | 0.547691 | 3_3:+83998391 | Msa0479130:five_prime_UTR |
| ATGACAGGAAATTCACCATC+CGG | 0.550612 | 3_3:-84000140 | None:intergenic |
| AAGCTCATAATCCGTATCGA+TGG | 0.555691 | 3_3:+84003486 | Msa0479130:CDS |
| ACAATGCGTTGAGTTGAAGA+AGG | 0.555886 | 3_3:+83998454 | Msa0479130:five_prime_UTR |
| TTCTGGAAAGAAGACGCTGA+TGG | 0.556197 | 3_3:+83998728 | Msa0479130:CDS |
| AGCTCATAATCCGTATCGAT+GGG | 0.559888 | 3_3:+84003487 | Msa0479130:CDS |
| AATCAATGCATTGATACGAA+AGG | 0.560014 | 3_3:-84000195 | None:intergenic |
| CAAGGGACCAAACGAATGCC+AGG | 0.560296 | 3_3:+83999480 | Msa0479130:CDS |
| GAATGTCATACTAAGAGGCC+CGG | 0.564903 | 3_3:-84003011 | None:intergenic |
| GAGAGTGCACAGATGCCCCT+TGG | 0.565824 | 3_3:+83999360 | Msa0479130:CDS |
| AATGGTACCATCAATCTCAC+TGG | 0.566011 | 3_3:-83999744 | None:intergenic |
| CGAGCTGTAAATGCAGGAAG+TGG | 0.566078 | 3_3:-84000385 | None:intergenic |
| AAAAGTTCCAAAACAAGAGA+AGG | 0.567363 | 3_3:-83998934 | None:intergenic |
| GAAATATTATGAAAGAAGCC+GGG | 0.593968 | 3_3:+84002993 | Msa0479130:CDS |
| TCATCCCTCTTCCTACCACC+AGG | 0.594245 | 3_3:-83999537 | None:intergenic |
| ATAGTGAATGTCATACTAAG+AGG | 0.595846 | 3_3:-84003016 | None:intergenic |
| TCTGTTGTTGCTAATGAACC+TGG | 0.597112 | 3_3:+83999519 | Msa0479130:CDS |
| ACATATCTAACCCATCGATA+CGG | 0.598665 | 3_3:-84003497 | None:intergenic |
| TATCAAGGTGTACAGACTCA+TGG | 0.599245 | 3_3:-83999976 | None:intergenic |
| TGAAGAAACAGGACCACTCA+AGG | 0.599897 | 3_3:+84000217 | Msa0479130:CDS |
| TGAACCTGGTGGTAGGAAGA+GGG | 0.600747 | 3_3:+83999533 | Msa0479130:CDS |
| ATAAATTCAGGAAAATTGCA+GGG | 0.602092 | 3_3:+84003617 | Msa0479130:three_prime_UTR |
| TACCACTTGTTCCTATACTC+AGG | 0.604701 | 3_3:-83999823 | None:intergenic |
| ATACGTGAACATCCATGAGT+TGG | 0.605913 | 3_3:-84003589 | None:intergenic |
| GACCTGAGTATAGGAACAAG+TGG | 0.607463 | 3_3:+83999821 | Msa0479130:CDS |
| AAAATGGAAGCGGGGCCAAG+GGG | 0.612021 | 3_3:-83999375 | None:intergenic |
| AGGCAAACTCATATGTTGCT+CGG | 0.614090 | 3_3:+84003525 | Msa0479130:CDS |
| GTTTGATAGGTACCACCGGA+TGG | 0.616900 | 3_3:+84000125 | Msa0479130:intron |
| CGTGTCATCAAAGATTACCT+TGG | 0.619516 | 3_3:+83998970 | Msa0479130:CDS |
| TTGCTAATGAACCTGGTGGT+AGG | 0.619992 | 3_3:+83999526 | Msa0479130:CDS |
| GATCGTGGTGAAGTCCAAAA+GGG | 0.621307 | 3_3:+83998674 | Msa0479130:intron |
| AATTGTTTGATAGGTACCAC+CGG | 0.628752 | 3_3:+84000121 | Msa0479130:intron |
| GATTCGACTTGCTCTCAATG+AGG | 0.629618 | 3_3:+83999799 | Msa0479130:CDS |
| TCAATGCATTGATACGAAAG+GGG | 0.644107 | 3_3:-84000193 | None:intergenic |
| AAGTGGCATCTGTACAAGAA+CGG | 0.650160 | 3_3:-84000368 | None:intergenic |
| CATCAAGAAGCTCATAGACA+AGG | 0.651523 | 3_3:-83999029 | None:intergenic |
| CAATGCATTGATACGAAAGG+GGG | 0.654552 | 3_3:-84000192 | None:intergenic |
| CGAACACGGGTGATATGACG+TGG | 0.656730 | 3_3:+83998359 | None:intergenic |
| ATGGGTTAGATATGTAACAC+AGG | 0.673938 | 3_3:+84003505 | Msa0479130:CDS |
| AGCCTTGAAGAATTGTACAT+AGG | 0.674056 | 3_3:-84003040 | None:intergenic |
| ATAACCCAGCAACCTTCACG+TGG | 0.682802 | 3_3:-83998879 | None:intergenic |
| AATGCATTGATACGAAAGGG+GGG | 0.717442 | 3_3:-84000191 | None:intergenic |
| ACAGGAAATTCACCATCCGG+TGG | 0.719814 | 3_3:-84000137 | None:intergenic |
| TGTGAACTACTTCCACGTGA+AGG | 0.725411 | 3_3:+83998867 | Msa0479130:CDS |
| AGTCTTCATTAAGAACACCA+AGG | 0.729590 | 3_3:-83998987 | None:intergenic |
| GTTGTTGCTAATGAACCTGG+TGG | 0.765351 | 3_3:+83999522 | Msa0479130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTATTTTATTTAAAAG+TGG | - | chr3_3:84001149-84001168 | None:intergenic | 10.0% |
| !!! | AAAATATGTTGATTATTAAT+GGG | - | chr3_3:84002740-84002759 | None:intergenic | 10.0% |
| !!! | TAAAATATGTTGATTATTAA+TGG | - | chr3_3:84002741-84002760 | None:intergenic | 10.0% |
| !! | CAAAAAAAACATAAAAATTT+AGG | - | chr3_3:84003253-84003272 | None:intergenic | 10.0% |
| !!! | AATTTTTATGTTTTTTTTGA+AGG | + | chr3_3:84003254-84003273 | Msa0479130:intron | 10.0% |
| !!! | TTAAATTGTTTTTCTTTTTT+TGG | + | chr3_3:84003344-84003363 | Msa0479130:intron | 10.0% |
| !! | TTATTTGAATTTCATGTTAT+CGG | - | chr3_3:83998649-83998668 | None:intergenic | 15.0% |
| !! | ACAAATAATTACCATAAAAA+TGG | - | chr3_3:83999394-83999413 | None:intergenic | 15.0% |
| !!! | CAGTAAATTTTTGAAAAATA+CGG | - | chr3_3:84000557-84000576 | None:intergenic | 15.0% |
| !! | GCATCAATATTAAAATTTAA+TGG | + | chr3_3:84000874-84000893 | Msa0479130:intron | 15.0% |
| !!! | ATTTTATTTAAAAGTGGTTT+GGG | - | chr3_3:84001143-84001162 | None:intergenic | 15.0% |
| !!! | TATTTTATTTAAAAGTGGTT+TGG | - | chr3_3:84001144-84001163 | None:intergenic | 15.0% |
| !!! | TTATTTAAGACACTATTATA+GGG | - | chr3_3:84001205-84001224 | None:intergenic | 15.0% |
| !!! | TTTATTTAAGACACTATTAT+AGG | - | chr3_3:84001206-84001225 | None:intergenic | 15.0% |
| !! | TGTCTTAAATAAATAGTTAT+TGG | + | chr3_3:84001213-84001232 | Msa0479130:intron | 15.0% |
| !! | TTAAATAAATAGTTATTGGT+GGG | + | chr3_3:84001217-84001236 | Msa0479130:intron | 15.0% |
| !! | AAGTAAAAAAACAGTAACAA+AGG | + | chr3_3:83998425-83998444 | Msa0479130:five_prime_UTR | 20.0% |
| !! | AAAAAAATACCTACAAAAAC+AGG | - | chr3_3:83998764-83998783 | None:intergenic | 20.0% |
| !! | TAATTTGAATAGAATGTAGA+TGG | + | chr3_3:83998844-83998863 | Msa0479130:intron | 20.0% |
| !! | ATTGTAAGTACTTATTAACT+TGG | + | chr3_3:83999057-83999076 | Msa0479130:intron | 20.0% |
| !! | GTAATTATTTGTAGATTCAA+TGG | + | chr3_3:83999402-83999421 | Msa0479130:intron | 20.0% |
| !!! | AAATTTTGCAGTAATAAGAA+GGG | - | chr3_3:83999674-83999693 | None:intergenic | 20.0% |
| !!! | AAAATTTTGCAGTAATAAGA+AGG | - | chr3_3:83999675-83999694 | None:intergenic | 20.0% |
| !! | AAAGATAATAGAATGAAATC+AGG | - | chr3_3:83999908-83999927 | None:intergenic | 20.0% |
| !! | TTATCTTTAACAGATTATAG+AGG | + | chr3_3:83999920-83999939 | Msa0479130:intron | 20.0% |
| !!! | CGTATTTTTCAAAAATTTAC+TGG | + | chr3_3:84000555-84000574 | Msa0479130:intron | 20.0% |
| !! | TATATTCTTGCAATTGAATT+TGG | + | chr3_3:84000662-84000681 | Msa0479130:intron | 20.0% |
| !!! | AATTTTAATATTGATGCTGA+AGG | - | chr3_3:84000871-84000890 | None:intergenic | 20.0% |
| !!! | TTTTATTTAAAAGTGGTTTG+GGG | - | chr3_3:84001142-84001161 | None:intergenic | 20.0% |
| !!! | ATCATTATTTAAGTTGTCAT+TGG | + | chr3_3:84001164-84001183 | Msa0479130:intron | 20.0% |
| !!! | TATTTAAGACACTATTATAG+GGG | - | chr3_3:84001204-84001223 | None:intergenic | 20.0% |
| !! | CTTAAATAAATAGTTATTGG+TGG | + | chr3_3:84001216-84001235 | Msa0479130:intron | 20.0% |
| !! | ATAAGAACAAGAAATCAAAT+GGG | - | chr3_3:84002565-84002584 | None:intergenic | 20.0% |
| !! | TATAAGAACAAGAAATCAAA+TGG | - | chr3_3:84002566-84002585 | None:intergenic | 20.0% |
| !! | TAAGGAAACAAATAAAAAAC+TGG | + | chr3_3:84002673-84002692 | Msa0479130:CDS | 20.0% |
| !! | AAACAAATAAAAAACTGGAA+TGG | + | chr3_3:84002678-84002697 | Msa0479130:CDS | 20.0% |
| !! | AACAAATAAAAAACTGGAAT+GGG | + | chr3_3:84002679-84002698 | Msa0479130:CDS | 20.0% |
| !!! | GTATTACTTAATGATAATGA+TGG | + | chr3_3:84002815-84002834 | Msa0479130:intron | 20.0% |
| !! | ATTTATCAAATAAAGCGATA+TGG | + | chr3_3:84003107-84003126 | Msa0479130:intron | 20.0% |
| !!! | ATATTAAACCTTAGTTTTGT+TGG | + | chr3_3:84003216-84003235 | Msa0479130:intron | 20.0% |
| !!! | TTCTAACATAACATTTTGTT+TGG | + | chr3_3:84003399-84003418 | Msa0479130:intron | 20.0% |
| !!! | TGTTTTTTTACTTTTGTTCG+TGG | - | chr3_3:83998418-83998437 | None:intergenic | 25.0% |
| ! | AATTACCATAAAAATGGAAG+CGG | - | chr3_3:83999388-83999407 | None:intergenic | 25.0% |
| !! | AACAACAGATTTTGTAATAG+CGG | - | chr3_3:83999508-83999527 | None:intergenic | 25.0% |
| !! | TGAGTTGTATTGTTTAAAAC+AGG | + | chr3_3:83999709-83999728 | Msa0479130:intron | 25.0% |
| !! | GAGTTGTATTGTTTAAAACA+GGG | + | chr3_3:83999710-83999729 | Msa0479130:intron | 25.0% |
| ! | AAGATAACTCTTCATTTGAA+TGG | - | chr3_3:83999765-83999784 | None:intergenic | 25.0% |
| ! | TTGCACAATAATTAGTCAAA+GGG | - | chr3_3:84000103-84000122 | None:intergenic | 25.0% |
| ! | ATTGCACAATAATTAGTCAA+AGG | - | chr3_3:84000104-84000123 | None:intergenic | 25.0% |
| ! | TTATTGTGCAATTGTTTGAT+AGG | + | chr3_3:84000112-84000131 | Msa0479130:intron | 25.0% |
| ! | ACAAGATTTAGGAAAATAGA+GGG | - | chr3_3:84000255-84000274 | None:intergenic | 25.0% |
| ! | AACAAGATTTAGGAAAATAG+AGG | - | chr3_3:84000256-84000275 | None:intergenic | 25.0% |
| ! | TCTTTAGTCCATTTAACAAT+CGG | + | chr3_3:84000276-84000295 | Msa0479130:intron | 25.0% |
| !!! | TTCTTTCTATTTCTAGTTGT+CGG | - | chr3_3:84000529-84000548 | None:intergenic | 25.0% |
| ! | CAATTGAATTTGGTAGAAAT+GGG | + | chr3_3:84000672-84000691 | Msa0479130:intron | 25.0% |
| ! | AATTGAATTTGGTAGAAATG+GGG | + | chr3_3:84000673-84000692 | Msa0479130:intron | 25.0% |
| !!! | AATATTTTGAACACACATCA+CGG | - | chr3_3:84001434-84001453 | None:intergenic | 25.0% |
| !!! | GTGTGTGTTTTTAATTTGTT+TGG | + | chr3_3:84002498-84002517 | Msa0479130:intron | 25.0% |
| ! | TCTTATATATTAGATCTCGT+TGG | + | chr3_3:84002579-84002598 | Msa0479130:intron | 25.0% |
| ! | TTCTAACTCAAAATTAACAC+TGG | - | chr3_3:84002624-84002643 | None:intergenic | 25.0% |
| ! | ATTTGTTTCCTTAAAATCAG+TGG | - | chr3_3:84002666-84002685 | None:intergenic | 25.0% |
| ! | ACAAATAAAAAACTGGAATG+GGG | + | chr3_3:84002680-84002699 | Msa0479130:CDS | 25.0% |
| ! | TTCATAAAGAACCTTATGTT+AGG | + | chr3_3:84002780-84002799 | Msa0479130:intron | 25.0% |
| !! | TACTTAATGATAATGATGGA+CGG | + | chr3_3:84002819-84002838 | Msa0479130:intron | 25.0% |
| !!! | TTTTTTTTGCTGAATGTCTA+AGG | + | chr3_3:84002943-84002962 | Msa0479130:intron | 25.0% |
| ! | AATTAATTGCAAAATGTGCT+AGG | + | chr3_3:84003151-84003170 | Msa0479130:intron | 25.0% |
| ! | AGGTTTAATATCTAGATGAA+CGG | - | chr3_3:84003207-84003226 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTGAAGGAAATAG+TGG | + | chr3_3:84003263-84003282 | Msa0479130:intron | 25.0% |
| ! | TGTTCTAACATAACATTTGT+TGG | + | chr3_3:84003427-84003446 | Msa0479130:intron | 25.0% |
| ! | AATAAATTCAGGAAAATTGC+AGG | + | chr3_3:84003616-84003635 | Msa0479130:three_prime_UTR | 25.0% |
| ! | ATAAATTCAGGAAAATTGCA+GGG | + | chr3_3:84003617-84003636 | Msa0479130:three_prime_UTR | 25.0% |
| ATTCAAATAAATGCAGATCG+TGG | + | chr3_3:83998659-83998678 | Msa0479130:intron | 30.0% | |
| ! | TTTTCCGCAAAGTTAAATTC+TGG | + | chr3_3:83998711-83998730 | Msa0479130:CDS | 30.0% |
| ! | CTTTCCAGAATTTAACTTTG+CGG | - | chr3_3:83998718-83998737 | None:intergenic | 30.0% |
| AAAATACCTACAAAAACAGG+TGG | - | chr3_3:83998761-83998780 | None:intergenic | 30.0% | |
| AAAAGTTCCAAAACAAGAGA+AGG | - | chr3_3:83998937-83998956 | None:intergenic | 30.0% | |
| ATTACCATAAAAATGGAAGC+GGG | - | chr3_3:83999387-83999406 | None:intergenic | 30.0% | |
| ATAAACATGCATACTTACAC+TGG | - | chr3_3:83999607-83999626 | None:intergenic | 30.0% | |
| CAAATGAAGAGTTATCTTAC+TGG | + | chr3_3:83999767-83999786 | Msa0479130:CDS | 30.0% | |
| TAGAATGAAATCAGGAAAGA+AGG | - | chr3_3:83999900-83999919 | None:intergenic | 30.0% | |
| TTAACAGATTATAGAGGTTC+TGG | + | chr3_3:83999926-83999945 | Msa0479130:intron | 30.0% | |
| GTTATACGATAATTCATGAC+AGG | - | chr3_3:84000158-84000177 | None:intergenic | 30.0% | |
| ! | ATCAATGCATTGATACGAAA+GGG | - | chr3_3:84000197-84000216 | None:intergenic | 30.0% |
| ! | AATCAATGCATTGATACGAA+AGG | - | chr3_3:84000198-84000217 | None:intergenic | 30.0% |
| !! | AATGCATTGATTGAAGAAAC+AGG | + | chr3_3:84000206-84000225 | Msa0479130:CDS | 30.0% |
| GGACTAAAGAAACAAGATTT+AGG | - | chr3_3:84000266-84000285 | None:intergenic | 30.0% | |
| AAGTATAGCCGATTGTTAAA+TGG | - | chr3_3:84000287-84000306 | None:intergenic | 30.0% | |
| GCAATTGAATTTGGTAGAAA+TGG | + | chr3_3:84000671-84000690 | Msa0479130:intron | 30.0% | |
| CTAAGAATCAAGTTCAAGTA+TGG | + | chr3_3:84000742-84000761 | Msa0479130:intron | 30.0% | |
| TGAATGGAAGGAGAAAAAAA+AGG | + | chr3_3:84000943-84000962 | Msa0479130:intron | 30.0% | |
| !! | ATTAGGTATTGGGTCTTAAA+TGG | - | chr3_3:84001039-84001058 | None:intergenic | 30.0% |
| ! | TTTAAGACCCAATACCTAAT+AGG | + | chr3_3:84001039-84001058 | Msa0479130:intron | 30.0% |
| AAAAAAAAATTCCCCATTGG+GGG | - | chr3_3:84001067-84001086 | None:intergenic | 30.0% | |
| CAAAAAAAAATTCCCCATTG+GGG | - | chr3_3:84001068-84001087 | None:intergenic | 30.0% | |
| CCAAAAAAAAATTCCCCATT+GGG | - | chr3_3:84001069-84001088 | None:intergenic | 30.0% | |
| !!! | CCAATGGGGAATTTTTTTTT+GGG | + | chr3_3:84001067-84001086 | Msa0479130:intron | 30.0% |
| !!! | CAATGGGGAATTTTTTTTTG+GGG | + | chr3_3:84001068-84001087 | Msa0479130:intron | 30.0% |
| !!! | AATGGGGAATTTTTTTTTGG+GGG | + | chr3_3:84001069-84001088 | Msa0479130:intron | 30.0% |
| TAAGTTGTCATTGGAGTTAT+TGG | + | chr3_3:84001173-84001192 | Msa0479130:intron | 30.0% | |
| CTCTAACAAAAGGTCTAAAT+GGG | - | chr3_3:84001244-84001263 | None:intergenic | 30.0% | |
| ! | CATTTAGACCTTTTGTTAGA+GGG | + | chr3_3:84001243-84001262 | Msa0479130:intron | 30.0% |
| AAAAAAGTGATGTGTCAATG+TGG | + | chr3_3:84001317-84001336 | Msa0479130:intron | 30.0% | |
| AAAAAGTGATGTGTCAATGT+GGG | + | chr3_3:84001318-84001337 | Msa0479130:intron | 30.0% | |
| !! | TCAACTTTGAGGTCTTAAAT+GGG | - | chr3_3:84001345-84001364 | None:intergenic | 30.0% |
| ! | ATTTAAGACCTCAAAGTTGA+GGG | + | chr3_3:84001345-84001364 | Msa0479130:intron | 30.0% |
| !! | ATATTTTGAACACACATCAC+GGG | - | chr3_3:84001433-84001452 | None:intergenic | 30.0% |
| !! | AAAATATTCAGCTTGCTGAA+TGG | + | chr3_3:84001446-84001465 | Msa0479130:intron | 30.0% |
| ACATTGAACTTACTGAATAG+TGG | + | chr3_3:84001611-84001630 | Msa0479130:intron | 30.0% | |
| CATTGAACTTACTGAATAGT+GGG | + | chr3_3:84001612-84001631 | Msa0479130:intron | 30.0% | |
| ATTGAACTTACTGAATAGTG+GGG | + | chr3_3:84001613-84001632 | Msa0479130:intron | 30.0% | |
| AGAACATTCAATCTGCTAAT+TGG | + | chr3_3:84001771-84001790 | Msa0479130:intron | 30.0% | |
| TTCAGCATCAACAAATCAAA+GGG | - | chr3_3:84002049-84002068 | None:intergenic | 30.0% | |
| ATTCAGCATCAACAAATCAA+AGG | - | chr3_3:84002050-84002069 | None:intergenic | 30.0% | |
| !! | TTGCCTTTGATTTGTTGATA+CGG | + | chr3_3:84002135-84002154 | Msa0479130:intron | 30.0% |
| ATTCCGTATCAACAAATCAA+AGG | - | chr3_3:84002141-84002160 | None:intergenic | 30.0% | |
| AGAACATTTAACACGCTAAA+TGG | + | chr3_3:84002184-84002203 | Msa0479130:intron | 30.0% | |
| CACACACAAGATAAAAAACA+AGG | - | chr3_3:84002481-84002500 | None:intergenic | 30.0% | |
| CTTTAACCATGACAAAGAAT+TGG | - | chr3_3:84002541-84002560 | None:intergenic | 30.0% | |
| !!! | GTTAATTTTGAGTTAGAACC+TGG | + | chr3_3:84002626-84002645 | Msa0479130:CDS | 30.0% |
| ACTCGTAAATACCTAACATA+AGG | - | chr3_3:84002794-84002813 | None:intergenic | 30.0% | |
| AACATGTTTGTAACGAATAC+AGG | + | chr3_3:84002971-84002990 | Msa0479130:intron | 30.0% | |
| GGAAATATTATGAAAGAAGC+CGG | + | chr3_3:84002992-84003011 | Msa0479130:intron | 30.0% | |
| GAAATATTATGAAAGAAGCC+GGG | + | chr3_3:84002993-84003012 | Msa0479130:CDS | 30.0% | |
| ATAGTGAATGTCATACTAAG+AGG | - | chr3_3:84003019-84003038 | None:intergenic | 30.0% | |
| TACCTATGTACAATTCTTCA+AGG | + | chr3_3:84003038-84003057 | Msa0479130:CDS | 30.0% | |
| !! | AATACTTGTTTTCCAACTCA+TGG | + | chr3_3:84003577-84003596 | Msa0479130:three_prime_UTR | 30.0% |
| !! | TGTTTCTCCTTCTCTTGTTT+TGG | + | chr3_3:83998927-83998946 | Msa0479130:CDS | 35.0% |
| AGTCTTCATTAAGAACACCA+AGG | - | chr3_3:83998990-83999009 | None:intergenic | 35.0% | |
| TGTATCTTGCTGCACTAAAT+GGG | - | chr3_3:83999123-83999142 | None:intergenic | 35.0% | |
| !! | GTCAATTTGTTCCAGGATTT+TGG | + | chr3_3:83999273-83999292 | Msa0479130:intron | 35.0% |
| TTTGCACATAACCAAAATCC+TGG | - | chr3_3:83999287-83999306 | None:intergenic | 35.0% | |
| TTACCATAAAAATGGAAGCG+GGG | - | chr3_3:83999386-83999405 | None:intergenic | 35.0% | |
| AAACTCTTGTATTTGCAGCA+AGG | + | chr3_3:83999462-83999481 | Msa0479130:intron | 35.0% | |
| AACTCTTGTATTTGCAGCAA+GGG | + | chr3_3:83999463-83999482 | Msa0479130:intron | 35.0% | |
| TGAAATCAGGAAAGAAGGAA+GGG | - | chr3_3:83999895-83999914 | None:intergenic | 35.0% | |
| ATGAAATCAGGAAAGAAGGA+AGG | - | chr3_3:83999896-83999915 | None:intergenic | 35.0% | |
| GGTCAGTATCAAAACTATCA+AGG | - | chr3_3:83999994-84000013 | None:intergenic | 35.0% | |
| CACTTACCAACGATAAAGTT+CGG | - | chr3_3:84000015-84000034 | None:intergenic | 35.0% | |
| AATTGTTTGATAGGTACCAC+CGG | + | chr3_3:84000121-84000140 | Msa0479130:intron | 35.0% | |
| ! | TCAATGCATTGATACGAAAG+GGG | - | chr3_3:84000196-84000215 | None:intergenic | 35.0% |
| GAGAAAAAAATCACCTTGAG+TGG | - | chr3_3:84000233-84000252 | None:intergenic | 35.0% | |
| GATTTATCAAACAGATCGAC+TGG | - | chr3_3:84000507-84000526 | None:intergenic | 35.0% | |
| ATAGCTATTAGTAGCCAATG+TGG | - | chr3_3:84000796-84000815 | None:intergenic | 35.0% | |
| TTCAGCAAGTCAAATGATTC+CGG | - | chr3_3:84000927-84000946 | None:intergenic | 35.0% | |
| !! | GAATCATTTGACTTGCTGAA+TGG | + | chr3_3:84000927-84000946 | Msa0479130:intron | 35.0% |
| !!! | CCCAATGGGGAATTTTTTTT+TGG | + | chr3_3:84001066-84001085 | Msa0479130:intron | 35.0% |
| CCCAAAAAAAAATTCCCCAT+TGG | - | chr3_3:84001070-84001089 | None:intergenic | 35.0% | |
| TTAAGACCTCCATTCTTAAG+TGG | + | chr3_3:84001115-84001134 | Msa0479130:intron | 35.0% | |
| TTGTCATTGGAGTTATTGGT+GGG | + | chr3_3:84001177-84001196 | Msa0479130:intron | 35.0% | |
| CCTCTAACAAAAGGTCTAAA+TGG | - | chr3_3:84001245-84001264 | None:intergenic | 35.0% | |
| ! | CCATTTAGACCTTTTGTTAG+AGG | + | chr3_3:84001242-84001261 | Msa0479130:intron | 35.0% |
| AAAAGTGATGTGTCAATGTG+GGG | + | chr3_3:84001319-84001338 | Msa0479130:intron | 35.0% | |
| !! | CTCAACTTTGAGGTCTTAAA+TGG | - | chr3_3:84001346-84001365 | None:intergenic | 35.0% |
| ! | CATTTAAGACCTCAAAGTTG+AGG | + | chr3_3:84001344-84001363 | Msa0479130:intron | 35.0% |
| CACACACATACAGAAAATTC+AGG | - | chr3_3:84001397-84001416 | None:intergenic | 35.0% | |
| TAGAGGTAGTACTACTAACT+AGG | - | chr3_3:84001489-84001508 | None:intergenic | 35.0% | |
| TACTACCTCTAACTCTATTG+CGG | + | chr3_3:84001498-84001517 | Msa0479130:intron | 35.0% | |
| TTGAACTTACTGAATAGTGG+GGG | + | chr3_3:84001614-84001633 | Msa0479130:intron | 35.0% | |
| CATTCAATCTGCTAATTGGA+AGG | + | chr3_3:84001775-84001794 | Msa0479130:intron | 35.0% | |
| TTGGCAAGCATGAGAAAAAT+AGG | + | chr3_3:84001950-84001969 | Msa0479130:intron | 35.0% | |
| TGGCAAGCATGAGAAAAATA+GGG | + | chr3_3:84001951-84001970 | Msa0479130:intron | 35.0% | |
| TCAGCATCAACAAATCAAAG+GGG | - | chr3_3:84002048-84002067 | None:intergenic | 35.0% | |
| !! | GATTTGTTGATGCTGAATGT+TGG | + | chr3_3:84002052-84002071 | Msa0479130:intron | 35.0% |
| GTATCAACAAATCAAAGGCA+AGG | - | chr3_3:84002136-84002155 | None:intergenic | 35.0% | |
| !! | GATTTGTTGATACGGAATGT+TGG | + | chr3_3:84002143-84002162 | Msa0479130:intron | 35.0% |
| ! | GTTAAATGTTCTGAGTTCTG+AGG | - | chr3_3:84002176-84002195 | None:intergenic | 35.0% |
| ACATTTAACACGCTAAATGG+AGG | + | chr3_3:84002187-84002206 | Msa0479130:intron | 35.0% | |
| CATTTAACACGCTAAATGGA+GGG | + | chr3_3:84002188-84002207 | Msa0479130:intron | 35.0% | |
| ATTTAACACGCTAAATGGAG+GGG | + | chr3_3:84002189-84002208 | Msa0479130:intron | 35.0% | |
| !!! | GGAATATGGAGAGTGTTTTT+TGG | + | chr3_3:84002279-84002298 | Msa0479130:intron | 35.0% |
| !!! | GGAATAAGGAAAGTGTTTTC+TGG | + | chr3_3:84002327-84002346 | Msa0479130:intron | 35.0% |
| !! | GGAAGGAATCTGATTTTTAG+TGG | + | chr3_3:84002425-84002444 | Msa0479130:intron | 35.0% |
| !!! | AGGAATCTGATTTTTAGTGG+TGG | + | chr3_3:84002428-84002447 | Msa0479130:intron | 35.0% |
| !!! | GGAATCTGATTTTTAGTGGT+GGG | + | chr3_3:84002429-84002448 | Msa0479130:intron | 35.0% |
| !! | AAAGAATTGGTCTTCAGTTC+TGG | - | chr3_3:84002528-84002547 | None:intergenic | 35.0% |
| TGAAGACCAATTCTTTGTCA+TGG | + | chr3_3:84002532-84002551 | Msa0479130:intron | 35.0% | |
| GGGAAAAGAAAAGATGATCA+AGG | - | chr3_3:84002720-84002739 | None:intergenic | 35.0% | |
| ! | ACATTTTCGCAGGAATTACA+TGG | + | chr3_3:84002896-84002915 | Msa0479130:CDS | 35.0% |
| AGCCTTGAAGAATTGTACAT+AGG | - | chr3_3:84003043-84003062 | None:intergenic | 35.0% | |
| TAAAGCGATATGGTCTGTAT+TGG | + | chr3_3:84003117-84003136 | Msa0479130:intron | 35.0% | |
| CTAGATGAACGGTATAATCA+TGG | - | chr3_3:84003196-84003215 | None:intergenic | 35.0% | |
| CAAGAACACCAACAAAACTA+AGG | - | chr3_3:84003227-84003246 | None:intergenic | 35.0% | |
| ! | AACATAACATTTGTTGGTGC+AGG | + | chr3_3:84003433-84003452 | Msa0479130:intron | 35.0% |
| ACATATCTAACCCATCGATA+CGG | - | chr3_3:84003500-84003519 | None:intergenic | 35.0% | |
| !! | ATGGGTTAGATATGTAACAC+AGG | + | chr3_3:84003505-84003524 | Msa0479130:CDS | 35.0% |
| CACGTATGCTGAATAAATTC+AGG | + | chr3_3:84003605-84003624 | Msa0479130:three_prime_UTR | 35.0% | |
| !! | ACAATGCGTTGAGTTGAAGA+AGG | + | chr3_3:83998454-83998473 | Msa0479130:five_prime_UTR | 40.0% |
| TTCTTCGTGCTTTCTCAAAG+AGG | + | chr3_3:83998516-83998535 | Msa0479130:CDS | 40.0% | |
| CGTGTCATCAAAGATTACCT+TGG | + | chr3_3:83998970-83998989 | Msa0479130:CDS | 40.0% | |
| CATCAAGAAGCTCATAGACA+AGG | - | chr3_3:83999032-83999051 | None:intergenic | 40.0% | |
| GTGTATCTTGCTGCACTAAA+TGG | - | chr3_3:83999124-83999143 | None:intergenic | 40.0% | |
| ! | TGCTGAAGTCAATTTGTTCC+AGG | + | chr3_3:83999266-83999285 | Msa0479130:intron | 40.0% |
| TGTGCAAACAACATCTACTG+AGG | + | chr3_3:83999299-83999318 | Msa0479130:intron | 40.0% | |
| TGTGCACTCTCAATCACAAT+TGG | - | chr3_3:83999351-83999370 | None:intergenic | 40.0% | |
| ! | AATGGACAATTACTTGCTGC+AGG | + | chr3_3:83999420-83999439 | Msa0479130:intron | 40.0% |
| ! | GATTTTGTAATAGCGGTACC+TGG | - | chr3_3:83999501-83999520 | None:intergenic | 40.0% |
| TCTGTTGTTGCTAATGAACC+TGG | + | chr3_3:83999519-83999538 | Msa0479130:CDS | 40.0% | |
| ATACTCACCAGTGAGATTGA+TGG | + | chr3_3:83999737-83999756 | Msa0479130:CDS | 40.0% | |
| AATGGTACCATCAATCTCAC+TGG | - | chr3_3:83999747-83999766 | None:intergenic | 40.0% | |
| TACCACTTGTTCCTATACTC+AGG | - | chr3_3:83999826-83999845 | None:intergenic | 40.0% | |
| TGAGTATAGGAACAAGTGGT+AGG | + | chr3_3:83999825-83999844 | Msa0479130:intron | 40.0% | |
| TATCAAGGTGTACAGACTCA+TGG | - | chr3_3:83999979-83999998 | None:intergenic | 40.0% | |
| TACTGACCGAACTTTATCGT+TGG | + | chr3_3:84000006-84000025 | Msa0479130:CDS | 40.0% | |
| ATGACAGGAAATTCACCATC+CGG | - | chr3_3:84000143-84000162 | None:intergenic | 40.0% | |
| ! | AATGCATTGATACGAAAGGG+GGG | - | chr3_3:84000194-84000213 | None:intergenic | 40.0% |
| ! | CAATGCATTGATACGAAAGG+GGG | - | chr3_3:84000195-84000214 | None:intergenic | 40.0% |
| ACAATCGGCTATACTTCCAT+AGG | + | chr3_3:84000291-84000310 | Msa0479130:intron | 40.0% | |
| TTAATGGTCACTTCAGCCTA+TGG | - | chr3_3:84000310-84000329 | None:intergenic | 40.0% | |
| GAATTCAGCTCGCACTTTAA+TGG | - | chr3_3:84000326-84000345 | None:intergenic | 40.0% | |
| AAGTGGCATCTGTACAAGAA+CGG | - | chr3_3:84000371-84000390 | None:intergenic | 40.0% | |
| TAATACCGAGCTGTAAATGC+AGG | - | chr3_3:84000394-84000413 | None:intergenic | 40.0% | |
| !! | TGTCAATTGAGCTTGCTAAC+AGG | + | chr3_3:84000481-84000500 | Msa0479130:intron | 40.0% |
| AGAACCTTTCATGTCACACA+TGG | + | chr3_3:84000629-84000648 | Msa0479130:intron | 40.0% | |
| AGCAGTCAATTTCACCACAT+TGG | + | chr3_3:84000779-84000798 | Msa0479130:intron | 40.0% | |
| !! | GAATAGTGGGTGATGTAGAA+GGG | - | chr3_3:84000844-84000863 | None:intergenic | 40.0% |
| !! | AGAATAGTGGGTGATGTAGA+AGG | - | chr3_3:84000845-84000864 | None:intergenic | 40.0% |
| TGCTGAAGGTTGAGAATAGT+GGG | - | chr3_3:84000857-84000876 | None:intergenic | 40.0% | |
| ATGCTGAAGGTTGAGAATAG+TGG | - | chr3_3:84000858-84000877 | None:intergenic | 40.0% | |
| GAGTCTGCTTAAATCAGAAC+CGG | + | chr3_3:84000905-84000924 | Msa0479130:intron | 40.0% | |
| !! | CATTTGACTTGCTGAATGGA+AGG | + | chr3_3:84000931-84000950 | Msa0479130:intron | 40.0% |
| ACTAACCATCCACATTGGTA+GGG | + | chr3_3:84001007-84001026 | Msa0479130:intron | 40.0% | |
| GTTGTCATTGGAGTTATTGG+TGG | + | chr3_3:84001176-84001195 | Msa0479130:intron | 40.0% | |
| AATGGAGACCCTCTAACAAA+AGG | - | chr3_3:84001254-84001273 | None:intergenic | 40.0% | |
| TAAGTGCTCGATCACTTCAA+TGG | - | chr3_3:84001272-84001291 | None:intergenic | 40.0% | |
| GAAGTGATCGAGCACTTATT+AGG | + | chr3_3:84001274-84001293 | Msa0479130:intron | 40.0% | |
| !! | ATATTCAGCTTGCTGAATGG+TGG | + | chr3_3:84001449-84001468 | Msa0479130:intron | 40.0% |
| !! | TATTCAGCTTGCTGAATGGT+GGG | + | chr3_3:84001450-84001469 | Msa0479130:intron | 40.0% |
| AACTTCCGCAATAGAGTTAG+AGG | - | chr3_3:84001506-84001525 | None:intergenic | 40.0% | |
| CATACAGAAAATCGCTGATG+AGG | - | chr3_3:84001533-84001552 | None:intergenic | 40.0% | |
| ACACAAGAGAGAAAAACCAG+GGG | - | chr3_3:84001582-84001601 | None:intergenic | 40.0% | |
| CACACAAGAGAGAAAAACCA+GGG | - | chr3_3:84001583-84001602 | None:intergenic | 40.0% | |
| ACACACAAGAGAGAAAAACC+AGG | - | chr3_3:84001584-84001603 | None:intergenic | 40.0% | |
| ! | TGAACTTACTGAATAGTGGG+GGG | + | chr3_3:84001615-84001634 | Msa0479130:intron | 40.0% |
| !! | TGAGGTATTGAATACCAGAG+TGG | - | chr3_3:84001831-84001850 | None:intergenic | 40.0% |
| TCTTTCTCTCACAGCAAATC+TGG | - | chr3_3:84001854-84001873 | None:intergenic | 40.0% | |
| !! | AGATTTGCTGTGAGAGAAAG+AGG | + | chr3_3:84001853-84001872 | Msa0479130:intron | 40.0% |
| !! | GATTTGCTGTGAGAGAAAGA+GGG | + | chr3_3:84001854-84001873 | Msa0479130:intron | 40.0% |
| !! | ATTTGCTGTGAGAGAAAGAG+GGG | + | chr3_3:84001855-84001874 | Msa0479130:intron | 40.0% |
| TCGATGCTTCACTAGAGATT+TGG | + | chr3_3:84001931-84001950 | Msa0479130:intron | 40.0% | |
| GGCAAGCATGAGAAAAATAG+GGG | + | chr3_3:84001952-84001971 | Msa0479130:intron | 40.0% | |
| GCAAGCATGAGAAAAATAGG+GGG | + | chr3_3:84001953-84001972 | Msa0479130:intron | 40.0% | |
| CAAGCATGAGAAAAATAGGG+GGG | + | chr3_3:84001954-84001973 | Msa0479130:intron | 40.0% | |
| ! | ATTAGTGTGCTAGTCTGCAT+TGG | + | chr3_3:84001994-84002013 | Msa0479130:intron | 40.0% |
| AGCATCAACAAATCAAAGGG+GGG | - | chr3_3:84002046-84002065 | None:intergenic | 40.0% | |
| CAGCATCAACAAATCAAAGG+GGG | - | chr3_3:84002047-84002066 | None:intergenic | 40.0% | |
| TTTAACACGCTAAATGGAGG+GGG | + | chr3_3:84002190-84002209 | Msa0479130:intron | 40.0% | |
| TCTCTATCTATCACACACAG+TGG | - | chr3_3:84002250-84002269 | None:intergenic | 40.0% | |
| GTGTGTGATAGATAGAGAGA+AGG | + | chr3_3:84002252-84002271 | Msa0479130:intron | 40.0% | |
| TGTGATAGATAGAGAGAAGG+AGG | + | chr3_3:84002255-84002274 | Msa0479130:intron | 40.0% | |
| GTGATAGATAGAGAGAAGGA+GGG | + | chr3_3:84002256-84002275 | Msa0479130:intron | 40.0% | |
| TGATAGATAGAGAGAAGGAG+GGG | + | chr3_3:84002257-84002276 | Msa0479130:intron | 40.0% | |
| TATCACACACAGCAAATCAC+TGG | - | chr3_3:84002390-84002409 | None:intergenic | 40.0% | |
| TGTGATAGAGAGAGAAAGAG+AGG | + | chr3_3:84002403-84002422 | Msa0479130:intron | 40.0% | |
| GTGATAGAGAGAGAAAGAGA+GGG | + | chr3_3:84002404-84002423 | Msa0479130:intron | 40.0% | |
| !!! | TTTTGAGTTAGAACCTGGAG+CGG | + | chr3_3:84002631-84002650 | Msa0479130:CDS | 40.0% |
| !!! | TGGACACACCACTGATTTTA+AGG | + | chr3_3:84002655-84002674 | Msa0479130:CDS | 40.0% |
| ACTGGAATGGGGACTAAAAA+AGG | + | chr3_3:84002691-84002710 | Msa0479130:CDS | 40.0% | |
| ! | TCCATTCTTTTGCAGGTTGT+TGG | + | chr3_3:84002842-84002861 | Msa0479130:intron | 40.0% |
| ACCAACAACCTGCAAAAGAA+TGG | - | chr3_3:84002846-84002865 | None:intergenic | 40.0% | |
| ! | ATTCTTTTGCAGGTTGTTGG+TGG | + | chr3_3:84002845-84002864 | Msa0479130:intron | 40.0% |
| GTACAATTCTTCAAGGCTTC+AGG | + | chr3_3:84003045-84003064 | Msa0479130:CDS | 40.0% | |
| AGGCTTCAGGTAAAATGACA+AGG | + | chr3_3:84003058-84003077 | Msa0479130:intron | 40.0% | |
| AAGCTCATAATCCGTATCGA+TGG | + | chr3_3:84003486-84003505 | Msa0479130:CDS | 40.0% | |
| ! | AGCTCATAATCCGTATCGAT+GGG | + | chr3_3:84003487-84003506 | Msa0479130:CDS | 40.0% |
| AGGCAAACTCATATGTTGCT+CGG | + | chr3_3:84003525-84003544 | Msa0479130:CDS | 40.0% | |
| ATACGTGAACATCCATGAGT+TGG | - | chr3_3:84003592-84003611 | None:intergenic | 40.0% | |
| AGATCGTGGTGAAGTCCAAA+AGG | + | chr3_3:83998673-83998692 | Msa0479130:intron | 45.0% | |
| GATCGTGGTGAAGTCCAAAA+GGG | + | chr3_3:83998674-83998693 | Msa0479130:intron | 45.0% | |
| ! | AAGTTTCAGCGCTTCCCTTT+TGG | - | chr3_3:83998691-83998710 | None:intergenic | 45.0% |
| ! | TTCTGGAAAGAAGACGCTGA+TGG | + | chr3_3:83998728-83998747 | Msa0479130:CDS | 45.0% |
| !!! | GATGCTCCACCTGTTTTTGT+AGG | + | chr3_3:83998752-83998771 | Msa0479130:intron | 45.0% |
| TGTGAACTACTTCCACGTGA+AGG | + | chr3_3:83998867-83998886 | Msa0479130:CDS | 45.0% | |
| GAGTAGTTGCTATAGCGTAG+CGG | + | chr3_3:83999169-83999188 | Msa0479130:intron | 45.0% | |
| GTTGTTGCTAATGAACCTGG+TGG | + | chr3_3:83999522-83999541 | Msa0479130:CDS | 45.0% | |
| TTGCTAATGAACCTGGTGGT+AGG | + | chr3_3:83999526-83999545 | Msa0479130:CDS | 45.0% | |
| TTGAGAGCAAGTCGAATCTC+TGG | - | chr3_3:83999797-83999816 | None:intergenic | 45.0% | |
| ! | GATTCGACTTGCTCTCAATG+AGG | + | chr3_3:83999799-83999818 | Msa0479130:CDS | 45.0% |
| CTCAATGAGGACCTGAGTAT+AGG | + | chr3_3:83999812-83999831 | Msa0479130:CDS | 45.0% | |
| GACCTGAGTATAGGAACAAG+TGG | + | chr3_3:83999821-83999840 | Msa0479130:CDS | 45.0% | |
| TGAAGAAACAGGACCACTCA+AGG | + | chr3_3:84000217-84000236 | Msa0479130:CDS | 45.0% | |
| CACTTCCTGCATTTACAGCT+CGG | + | chr3_3:84000386-84000405 | Msa0479130:CDS | 45.0% | |
| GCAACCATGTGTGACATGAA+AGG | - | chr3_3:84000636-84000655 | None:intergenic | 45.0% | |
| ATGTCACACATGGTTGCATG+TGG | + | chr3_3:84000639-84000658 | Msa0479130:intron | 45.0% | |
| !! | AAAGGAGTGCTTACTAGTGC+TGG | + | chr3_3:84000961-84000980 | Msa0479130:intron | 45.0% |
| CAGTGACTAACCATCCACAT+TGG | + | chr3_3:84001002-84001021 | Msa0479130:intron | 45.0% | |
| GACTAACCATCCACATTGGT+AGG | + | chr3_3:84001006-84001025 | Msa0479130:intron | 45.0% | |
| AAAGACCCTACCAATGTGGA+TGG | - | chr3_3:84001015-84001034 | None:intergenic | 45.0% | |
| TGGTAAAGACCCTACCAATG+TGG | - | chr3_3:84001019-84001038 | None:intergenic | 45.0% | |
| !! | GGGGGTACCTATTAGGTATT+GGG | - | chr3_3:84001049-84001068 | None:intergenic | 45.0% |
| !! | TGGGGGTACCTATTAGGTAT+TGG | - | chr3_3:84001050-84001069 | None:intergenic | 45.0% |
| TACCTAATAGGTACCCCCAA+TGG | + | chr3_3:84001051-84001070 | Msa0479130:intron | 45.0% | |
| ACCTAATAGGTACCCCCAAT+GGG | + | chr3_3:84001052-84001071 | Msa0479130:intron | 45.0% | |
| ! | GTTTGGGGTCCACTTAAGAA+TGG | - | chr3_3:84001127-84001146 | None:intergenic | 45.0% |
| AATGGAGACCCTCAACTTTG+AGG | - | chr3_3:84001356-84001375 | None:intergenic | 45.0% | |
| AAAGTTGAGGGTCTCCATTG+TGG | + | chr3_3:84001357-84001376 | Msa0479130:intron | 45.0% | |
| TGACTCATGAGCATCCACAA+TGG | - | chr3_3:84001374-84001393 | None:intergenic | 45.0% | |
| !! | ATTCAGCTTGCTGAATGGTG+GGG | + | chr3_3:84001451-84001470 | Msa0479130:intron | 45.0% |
| ! | GAACTTACTGAATAGTGGGG+GGG | + | chr3_3:84001616-84001635 | Msa0479130:intron | 45.0% |
| ! | AGAAGAGTGCAAGCTAGTAC+TGG | + | chr3_3:84001642-84001661 | Msa0479130:intron | 45.0% |
| TACTGGCACCAACTATACTG+CGG | + | chr3_3:84001659-84001678 | Msa0479130:intron | 45.0% | |
| ATTGACTGCCGCAGTATAGT+TGG | - | chr3_3:84001670-84001689 | None:intergenic | 45.0% | |
| GCACAGAAAAACCACTGGTA+GGG | - | chr3_3:84001731-84001750 | None:intergenic | 45.0% | |
| !! | GGAGATTGAGAGTGCTTGTT+AGG | + | chr3_3:84001796-84001815 | Msa0479130:intron | 45.0% |
| ! | TTTGCTGTGAGAGAAAGAGG+GGG | + | chr3_3:84001856-84001875 | Msa0479130:intron | 45.0% |
| !! | AAGCATCGACTAGAACTGTG+GGG | - | chr3_3:84001920-84001939 | None:intergenic | 45.0% |
| !! | GAAGCATCGACTAGAACTGT+GGG | - | chr3_3:84001921-84001940 | None:intergenic | 45.0% |
| !! | TGAAGCATCGACTAGAACTG+TGG | - | chr3_3:84001922-84001941 | None:intergenic | 45.0% |
| CATGAGAAAAATAGGGGGGT+GGG | + | chr3_3:84001958-84001977 | Msa0479130:intron | 45.0% | |
| ATGAGAAAAATAGGGGGGTG+GGG | + | chr3_3:84001959-84001978 | Msa0479130:intron | 45.0% | |
| CATTGGCGCTAACTCTAGTA+TGG | + | chr3_3:84002011-84002030 | Msa0479130:intron | 45.0% | |
| ! | AGTAGAGTGCTAGTCTGAGT+TGG | + | chr3_3:84002084-84002103 | Msa0479130:intron | 45.0% |
| AGTTGGCGCTAACTCTACTA+TGG | + | chr3_3:84002101-84002120 | Msa0479130:intron | 45.0% | |
| GATAGATAGAGAGAAGGAGG+GGG | + | chr3_3:84002258-84002277 | Msa0479130:intron | 45.0% | |
| TGTGAGAAAGAGAGAGGGAA+GGG | + | chr3_3:84002305-84002324 | Msa0479130:intron | 45.0% | |
| !!! | AGGAAAGTGTTTTCTGGAGC+TGG | + | chr3_3:84002333-84002352 | Msa0479130:intron | 45.0% |
| TAGAGAGAGAAAGAGAGGGA+AGG | + | chr3_3:84002408-84002427 | Msa0479130:intron | 45.0% | |
| ! | TGCAAAGCTGACATTTTCGC+AGG | + | chr3_3:84002886-84002905 | Msa0479130:CDS | 45.0% |
| GAATGTCATACTAAGAGGCC+CGG | - | chr3_3:84003014-84003033 | None:intergenic | 45.0% | |
| !! | ATTATTTATAAAAAAGAAAT+TGG | - | chr3_3:83998606-83998625 | None:intergenic | 5.0% |
| TACTTCCACGTGAAGGTTGC+TGG | + | chr3_3:83998874-83998893 | Msa0479130:CDS | 50.0% | |
| ACTTCCACGTGAAGGTTGCT+GGG | + | chr3_3:83998875-83998894 | Msa0479130:CDS | 50.0% | |
| ATAACCCAGCAACCTTCACG+TGG | - | chr3_3:83998882-83998901 | None:intergenic | 50.0% | |
| AAAAATGGAAGCGGGGCCAA+GGG | - | chr3_3:83999379-83999398 | None:intergenic | 50.0% | |
| TAAAAATGGAAGCGGGGCCA+AGG | - | chr3_3:83999380-83999399 | None:intergenic | 50.0% | |
| !! | TGGCCCCGCTTCCATTTTTA+TGG | + | chr3_3:83999380-83999399 | Msa0479130:CDS | 50.0% |
| ATGAACCTGGTGGTAGGAAG+AGG | + | chr3_3:83999532-83999551 | Msa0479130:CDS | 50.0% | |
| TGAACCTGGTGGTAGGAAGA+GGG | + | chr3_3:83999533-83999552 | Msa0479130:CDS | 50.0% | |
| GTTTGATAGGTACCACCGGA+TGG | + | chr3_3:84000125-84000144 | Msa0479130:intron | 50.0% | |
| ACAGGAAATTCACCATCCGG+TGG | - | chr3_3:84000140-84000159 | None:intergenic | 50.0% | |
| CGAGCTGTAAATGCAGGAAG+TGG | - | chr3_3:84000388-84000407 | None:intergenic | 50.0% | |
| AGTGGGTGATGTAGAAGGGA+TGG | - | chr3_3:84000840-84000859 | None:intergenic | 50.0% | |
| ! | TGGTTAGTCACTGACTGCCA+TGG | - | chr3_3:84000995-84001014 | None:intergenic | 50.0% |
| CCTAATAGGTACCCCCAATG+GGG | + | chr3_3:84001053-84001072 | Msa0479130:intron | 50.0% | |
| GAGGTCTTAAGTGAGACCCT+GGG | - | chr3_3:84001105-84001124 | None:intergenic | 50.0% | |
| TGGGGTCCACTTAAGAATGG+AGG | - | chr3_3:84001124-84001143 | None:intergenic | 50.0% | |
| TGAACACACATCACGGGTGA+GGG | - | chr3_3:84001427-84001446 | None:intergenic | 50.0% | |
| TTGAACACACATCACGGGTG+AGG | - | chr3_3:84001428-84001447 | None:intergenic | 50.0% | |
| CAAGAGAGAAAAACCAGGGG+TGG | - | chr3_3:84001579-84001598 | None:intergenic | 50.0% | |
| CGCACAGAAAAACCACTGGT+AGG | - | chr3_3:84001732-84001751 | None:intergenic | 50.0% | |
| ! | ACCAGTGGTTTTTCTGTGCG+TGG | + | chr3_3:84001732-84001751 | Msa0479130:intron | 50.0% |
| ! | CCAGTGGTTTTTCTGTGCGT+GGG | + | chr3_3:84001733-84001752 | Msa0479130:intron | 50.0% |
| ! | GTTTTTCTGTGCGTGGGCAA+GGG | + | chr3_3:84001739-84001758 | Msa0479130:intron | 50.0% |
| TTAGGTCGCTAACTCCACTC+TGG | + | chr3_3:84001814-84001833 | Msa0479130:intron | 50.0% | |
| CTCTCACAGCAAATCTGGTG+AGG | - | chr3_3:84001849-84001868 | None:intergenic | 50.0% | |
| AGGAGATTGTCTGCTAGCGT+TGG | + | chr3_3:84001888-84001907 | Msa0479130:intron | 50.0% | |
| ATCGACTAGAACTGTGGGGT+TGG | - | chr3_3:84001916-84001935 | None:intergenic | 50.0% | |
| GCATGAGAAAAATAGGGGGG+TGG | + | chr3_3:84001957-84001976 | Msa0479130:intron | 50.0% | |
| ACGCTAAATGGAGGGGGAAA+AGG | + | chr3_3:84002196-84002215 | Msa0479130:intron | 50.0% | |
| AGAGAGAAGGAGGGGGAATA+TGG | + | chr3_3:84002265-84002284 | Msa0479130:intron | 50.0% | |
| TGGAGCTGTGAGAAAGAGAG+AGG | + | chr3_3:84002299-84002318 | Msa0479130:intron | 50.0% | |
| GGAGCTGTGAGAAAGAGAGA+GGG | + | chr3_3:84002300-84002319 | Msa0479130:intron | 50.0% | |
| CTGTGAGAAAGAGAGAGGGA+AGG | + | chr3_3:84002304-84002323 | Msa0479130:intron | 50.0% | |
| GTGAGAAAGAGAGAGGGAAG+GGG | + | chr3_3:84002306-84002325 | Msa0479130:intron | 50.0% | |
| AGAGAGAGGGAAGGGGAATA+AGG | + | chr3_3:84002313-84002332 | Msa0479130:intron | 50.0% | |
| CACACAGCAAATCACTGGTG+AGG | - | chr3_3:84002385-84002404 | None:intergenic | 50.0% | |
| ! | TGGACGGTCCATTCTTTTGC+AGG | + | chr3_3:84002835-84002854 | Msa0479130:intron | 50.0% |
| ! | ACTGCGTTTGTTGCGAAGCG+TGG | + | chr3_3:83998391-83998410 | Msa0479130:five_prime_UTR | 55.0% |
| AAAATGGAAGCGGGGCCAAG+GGG | - | chr3_3:83999378-83999397 | None:intergenic | 55.0% | |
| CAAGGGACCAAACGAATGCC+AGG | + | chr3_3:83999480-83999499 | Msa0479130:CDS | 55.0% | |
| AGCGGTACCTGGCATTCGTT+TGG | - | chr3_3:83999490-83999509 | None:intergenic | 55.0% | |
| TCATCCCTCTTCCTACCACC+AGG | - | chr3_3:83999540-83999559 | None:intergenic | 55.0% | |
| !! | TAGTGCTGGCACTGACACCA+TGG | + | chr3_3:84000975-84000994 | Msa0479130:intron | 55.0% |
| !! | CCCCATTGGGGGTACCTATT+AGG | - | chr3_3:84001056-84001075 | None:intergenic | 55.0% |
| TTGGGGGTCTCTTATGACCC+AGG | + | chr3_3:84001085-84001104 | Msa0479130:intron | 55.0% | |
| TGGGGGTCTCTTATGACCCA+GGG | + | chr3_3:84001086-84001105 | Msa0479130:intron | 55.0% | |
| GGAGGTCTTAAGTGAGACCC+TGG | - | chr3_3:84001106-84001125 | None:intergenic | 55.0% | |
| GAACACACATCACGGGTGAG+GGG | - | chr3_3:84001426-84001445 | None:intergenic | 55.0% | |
| GAGAAAAACCAGGGGTGGTG+AGG | - | chr3_3:84001574-84001593 | None:intergenic | 55.0% | |
| CCCACGCACAGAAAAACCAC+TGG | - | chr3_3:84001736-84001755 | None:intergenic | 55.0% | |
| ! | GGTTTTTCTGTGCGTGGGCA+AGG | + | chr3_3:84001738-84001757 | Msa0479130:intron | 55.0% |
| TGTGAGAGAAAGAGGGGGAG+TGG | + | chr3_3:84001861-84001880 | Msa0479130:intron | 55.0% | |
| GTGAGAGAAAGAGGGGGAGT+GGG | + | chr3_3:84001862-84001881 | Msa0479130:intron | 55.0% | |
| GAAAGAGGGGGAGTGGGAAA+AGG | + | chr3_3:84001868-84001887 | Msa0479130:intron | 55.0% | |
| !! | AGGGGGAAAAGGAGAGTGCT+TGG | + | chr3_3:84002207-84002226 | Msa0479130:intron | 55.0% |
| !! | AGGAGAGTGCTTGGTAGCAC+TGG | + | chr3_3:84002216-84002235 | Msa0479130:intron | 55.0% |
| GAGTTAGAACCTGGAGCGGT+TGG | + | chr3_3:84002635-84002654 | Msa0479130:CDS | 55.0% | |
| ! | GAGAGTGCACAGATGCCCCT+TGG | + | chr3_3:83999360-83999379 | Msa0479130:CDS | 60.0% |
| GCACATGTGCACCCTACCAG+TGG | + | chr3_3:84001717-84001736 | Msa0479130:intron | 60.0% | |
| GTGGTGTGTCCAACCGCTCC+AGG | - | chr3_3:84002647-84002666 | None:intergenic | 65.0% | |
| CGCACGTGCCTCACCACCCC+TGG | + | chr3_3:84001563-84001582 | Msa0479130:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83998363 | 84003747 | 83998363 | ID=Msa0479130;Name=Msa0479130 |
| chr3_3 | mRNA | 83998363 | 84003747 | 83998363 | ID=Msa0479130-mRNA-1;Parent=Msa0479130;Name=Msa0479130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=141|0.91|0.92|1|1|1|13|194|428 |
| chr3_3 | exon | 83998363 | 83998561 | 83998363 | ID=Msa0479130-mRNA-1:exon:23787;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 83998675 | 83998769 | 83998675 | ID=Msa0479130-mRNA-1:exon:23788;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 83998856 | 83999059 | 83998856 | ID=Msa0479130-mRNA-1:exon:23789;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 83999330 | 83999401 | 83999330 | ID=Msa0479130-mRNA-1:exon:23790;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 83999480 | 83999608 | 83999480 | ID=Msa0479130-mRNA-1:exon:23791;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 83999731 | 83999842 | 83999731 | ID=Msa0479130-mRNA-1:exon:23792;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 83999933 | 84000027 | 83999933 | ID=Msa0479130-mRNA-1:exon:23793;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 84000134 | 84000238 | 84000134 | ID=Msa0479130-mRNA-1:exon:23794;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 84000313 | 84000407 | 84000313 | ID=Msa0479130-mRNA-1:exon:23795;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 84002625 | 84002712 | 84002625 | ID=Msa0479130-mRNA-1:exon:23796;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 84002857 | 84002917 | 84002857 | ID=Msa0479130-mRNA-1:exon:23797;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 84002993 | 84003066 | 84002993 | ID=Msa0479130-mRNA-1:exon:23798;Parent=Msa0479130-mRNA-1 |
| chr3_3 | exon | 84003455 | 84003747 | 84003455 | ID=Msa0479130-mRNA-1:exon:23799;Parent=Msa0479130-mRNA-1 |
| chr3_3 | five_prime_UTR | 83998363 | 83998503 | 83998363 | ID=Msa0479130-mRNA-1:five_prime_utr;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 83998504 | 83998561 | 83998504 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 83998675 | 83998769 | 83998675 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 83998856 | 83999059 | 83998856 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 83999330 | 83999401 | 83999330 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 83999480 | 83999608 | 83999480 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 83999731 | 83999842 | 83999731 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 83999933 | 84000027 | 83999933 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 84000134 | 84000238 | 84000134 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 84000313 | 84000407 | 84000313 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 84002625 | 84002712 | 84002625 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 84002857 | 84002917 | 84002857 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 84002993 | 84003066 | 84002993 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | CDS | 84003455 | 84003553 | 84003455 | ID=Msa0479130-mRNA-1:cds;Parent=Msa0479130-mRNA-1 |
| chr3_3 | three_prime_UTR | 84003554 | 84003747 | 84003554 | ID=Msa0479130-mRNA-1:three_prime_utr;Parent=Msa0479130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
