AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588020 MtrunA17_Chr4g0004101 97.039 304 5 1 249 548 28 331 0.0 612
Msa0588020 MtrunA17_Chr4g0004841 84.790 309 39 2 248 548 32 340 0.0 543
Msa0588020 MtrunA17_Chr4g0004091 93.077 260 12 1 1 254 1 260 3.59e-144 417
Msa0588020 MtrunA17_Chr4g0004831 74.118 255 65 1 1 254 1 255 4.48e-115 342
Msa0588020 MtrunA17_Chr6g0471921 27.528 534 316 18 52 544 4 507 1.93e-39 150
Msa0588020 MtrunA17_Chr4g0028411 25.977 512 309 17 75 540 47 534 6.20e-32 129
Msa0588020 MtrunA17_Chr4g0039791 27.094 406 243 14 184 547 166 560 7.10e-30 123
Msa0588020 MtrunA17_Chr5g0409771 24.554 505 326 14 81 547 67 554 4.17e-29 121
Msa0588020 MtrunA17_Chr5g0409791 26.943 386 226 11 205 547 195 567 1.20e-28 120
Msa0588020 MtrunA17_Chr1g0180541 26.400 375 216 12 211 540 181 540 1.68e-27 116
Msa0588020 MtrunA17_Chr1g0186071 28.729 362 207 13 216 540 201 548 1.82e-27 116
Msa0588020 MtrunA17_Chr3g0116251 26.506 415 239 15 173 540 153 548 5.10e-27 115
Msa0588020 MtrunA17_Chr1g0157401 26.849 365 219 12 221 547 205 559 9.96e-27 114
Msa0588020 MtrunA17_Chr5g0433231 28.922 408 227 18 183 543 153 544 2.30e-26 113
Msa0588020 MtrunA17_Chr6g0471311 28.297 364 213 16 221 543 190 546 1.32e-25 110
Msa0588020 MtrunA17_Chr5g0433221 27.913 412 226 15 183 543 153 544 1.33e-25 110
Msa0588020 MtrunA17_Chr1g0180551 25.581 387 217 13 208 540 244 613 7.08e-25 108
Msa0588020 MtrunA17_Chr2g0327341 24.796 367 227 12 211 540 177 531 1.77e-24 107
Msa0588020 MtrunA17_Chr3g0109731 26.772 381 217 15 211 541 179 547 7.92e-24 105
Msa0588020 MtrunA17_Chr8g0353341 24.847 326 189 10 212 492 199 513 2.29e-21 97.8
Msa0588020 MtrunA17_Chr3g0116271 24.324 370 222 10 215 540 195 550 2.93e-21 97.4
Msa0588020 MtrunA17_Chr2g0292471 23.496 532 287 18 109 547 52 556 1.79e-20 95.1
Msa0588020 MtrunA17_Chr1g0205711 26.543 324 165 7 220 471 258 580 3.11e-20 94.7
Msa0588020 MtrunA17_Chr7g0252691 26.316 380 209 17 219 543 359 722 4.32e-20 94.4
Msa0588020 MtrunA17_Chr5g0433241 26.371 383 229 16 202 543 173 543 7.66e-20 93.2
Msa0588020 MtrunA17_Chr4g0072561 23.669 507 318 15 80 540 57 540 2.11e-19 91.7
Msa0588020 MtrunA17_Chr5g0395431 23.234 538 313 18 66 541 81 580 2.34e-19 91.7
Msa0588020 MtrunA17_Chr8g0370701 25.067 375 214 14 217 542 222 578 4.21e-19 90.9
Msa0588020 MtrunA17_Chr5g0396311 26.685 371 205 14 221 542 182 534 6.60e-19 90.1
Msa0588020 MtrunA17_Chr3g0102411 24.860 358 214 11 227 542 191 535 1.88e-18 88.6
Msa0588020 MtrunA17_Chr1g0197391 25.474 369 204 12 221 540 212 558 5.39e-18 87.4
Msa0588020 MtrunA17_Chr2g0301671 27.493 371 194 16 227 541 201 552 6.72e-18 87.0
Msa0588020 MtrunA17_Chr4g0000461 23.392 513 310 20 82 541 53 535 2.75e-17 85.1
Msa0588020 MtrunA17_Chr8g0351251 24.152 501 283 19 112 540 146 621 5.20e-17 85.1
Msa0588020 MtrunA17_Chr4g0068151 32.903 155 96 5 391 541 402 552 2.64e-16 82.0
Msa0588020 MtrunA17_Chr2g0334131 25.670 261 162 11 298 541 32 277 8.04e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588020 AT3G16170.1 60.243 576 155 7 37 548 43 608 0.0 670
Msa0588020 AT3G48990.1 27.754 472 276 15 109 538 56 504 7.29e-41 155
Msa0588020 AT4G19010.1 26.796 362 221 12 220 544 204 558 8.83e-31 126
Msa0588020 AT1G20480.1 27.348 362 219 12 220 547 213 564 6.50e-29 121
Msa0588020 AT1G21530.2 27.123 365 217 10 222 543 186 544 3.97e-28 118
Msa0588020 AT1G20510.1 26.171 363 223 12 220 546 189 542 5.79e-28 118
Msa0588020 AT1G21530.1 28.150 373 201 12 222 543 186 542 1.83e-27 116
Msa0588020 AT1G20500.1 28.177 362 217 11 220 547 197 549 1.92e-27 116
Msa0588020 AT5G63380.1 26.385 379 223 12 206 543 190 553 3.36e-27 115
Msa0588020 AT1G30520.2 27.204 397 206 15 218 546 170 551 4.06e-27 115
Msa0588020 AT1G30520.1 27.204 397 206 15 218 546 170 551 4.06e-27 115
Msa0588020 AT4G05160.1 25.405 370 228 11 215 547 185 543 1.46e-26 114
Msa0588020 AT1G77240.1 26.263 396 226 15 198 546 167 543 3.21e-26 112
Msa0588020 AT1G21540.1 26.893 383 229 12 207 546 174 548 9.64e-26 111
Msa0588020 AT5G36880.6 27.139 409 236 17 189 543 264 664 2.07e-23 105
Msa0588020 AT5G36880.3 27.139 409 236 17 189 543 264 664 2.07e-23 105
Msa0588020 AT5G36880.5 27.139 409 236 17 189 543 264 664 2.07e-23 105
Msa0588020 AT5G36880.1 27.139 409 236 17 189 543 264 664 2.07e-23 105
Msa0588020 AT5G36880.2 27.139 409 236 17 189 543 314 714 2.36e-23 105
Msa0588020 AT1G68270.1 28.142 366 207 13 213 543 177 521 4.08e-23 103
Msa0588020 AT1G65880.1 26.020 392 203 14 217 543 183 552 5.50e-21 97.1
Msa0588020 AT5G16340.1 30.263 380 189 19 218 543 183 540 9.48e-21 96.3
Msa0588020 AT5G38120.1 25.134 374 211 12 220 547 199 549 3.03e-20 94.7
Msa0588020 AT1G75960.1 29.333 375 200 18 218 543 182 540 5.16e-20 94.0
Msa0588020 AT1G65060.1 22.913 515 313 17 80 541 74 557 7.65e-20 93.6
Msa0588020 AT1G65890.1 25.320 391 206 14 217 543 183 551 8.95e-20 93.2
Msa0588020 AT1G66120.1 26.790 377 209 13 218 543 184 544 9.88e-20 93.2
Msa0588020 AT3G21240.1 23.373 415 224 14 187 541 167 547 1.71e-19 92.4
Msa0588020 AT5G36880.4 28.571 336 185 15 189 472 264 596 1.88e-19 92.4
Msa0588020 AT5G27600.1 28.395 324 159 8 220 471 261 583 1.89e-19 92.8
Msa0588020 AT5G16370.1 29.545 396 201 21 201 543 170 540 1.95e-19 92.0
Msa0588020 AT1G20560.2 28.647 377 188 17 221 541 110 461 2.71e-19 91.3
Msa0588020 AT1G20560.1 28.647 377 188 17 221 541 188 539 3.18e-19 91.7
Msa0588020 AT2G17650.1 27.273 385 214 15 207 542 228 595 9.54e-19 90.1
Msa0588020 AT3G21230.1 23.438 384 204 16 218 541 208 561 2.66e-18 88.6
Msa0588020 AT3G16910.1 23.146 553 314 19 65 541 38 555 2.71e-18 88.6
Msa0588020 AT3G05970.1 29.391 279 118 8 220 425 261 533 2.82e-18 89.0
Msa0588020 AT1G20510.2 25.784 287 174 11 220 470 189 472 4.43e-18 87.4
Msa0588020 AT1G51680.1 22.612 513 320 19 82 541 66 554 1.78e-16 82.8
Msa0588020 AT5G38120.3 25.705 319 174 11 220 492 199 500 1.16e-15 80.1
Msa0588020 AT1G62940.1 24.346 382 224 14 213 546 174 538 1.82e-15 79.7
Msa0588020 AT1G51680.3 22.489 458 284 17 82 486 66 505 8.59e-12 68.2

Find 145 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAACAATTTGATTAATT+TGG 0.184579 4_2:-10131482 Msa0588020:three_prime_UTR
ACAATAAGTTTAACCTTATT+AGG 0.223251 4_2:-10131611 Msa0588020:three_prime_UTR
CTTCATCGTTTAAAGAATAT+TGG 0.225924 4_2:-10133292 Msa0588020:CDS
AAAATAGAAGCCCTTTATTC+TGG 0.231622 4_2:-10131646 Msa0588020:three_prime_UTR
CATCACTGGACATCGCTTAT+TGG 0.257721 4_2:-10134090 Msa0588020:CDS
GATTCCCATTCTTGCATAAC+AGG 0.259251 4_2:+10134113 None:intergenic
AGTTTAGTGTCAGTGGAATT+TGG 0.269993 4_2:-10135123 Msa0588020:CDS
AGTAATGGACATTCACAAAA+TGG 0.278392 4_2:-10136026 Msa0588020:CDS
TATTAGGAACGGGCGGAATA+TGG 0.284839 4_2:+10136066 None:intergenic
GAAAACTGGTTTCAAAGAAT+TGG 0.287391 4_2:+10131713 None:intergenic
GGAACTCATTGAATTGATTA+TGG 0.292760 4_2:+10138595 None:intergenic
ACCATTAGAACATTATTTAC+TGG 0.293239 4_2:-10131742 Msa0588020:three_prime_UTR
GTAAGGTGCAAGTTTATTCT+TGG 0.296335 4_2:+10132186 None:intergenic
TGTCTCAGAATGTTGCGTTT+TGG 0.296796 4_2:-10132320 Msa0588020:CDS
CTGCAAGCCACTTCAGCATC+TGG 0.302779 4_2:-10134673 Msa0588020:CDS
CACACGTTGGTTGGTTGGTT+TGG 0.312189 4_2:+10138745 None:intergenic
CTCTTCTCTGAGGAATTATT+AGG 0.326160 4_2:+10136050 None:intergenic
GCTGAAGTGGCTTGCAGCTC+AGG 0.329316 4_2:+10134679 None:intergenic
ATCTCAATCTACAACATATA+TGG 0.339248 4_2:-10137191 Msa0588020:CDS
CACGATAACCTTGTATTAAC+CGG 0.339824 4_2:+10134710 None:intergenic
GCCAGTAAATAATGTTCTAA+TGG 0.346326 4_2:+10131741 None:intergenic
AACAAATTCGGCAGACGGTT+TGG 0.361786 4_2:+10136563 None:intergenic
GATAATTCTTCAAGGCTTAG+AGG 0.370730 4_2:+10132217 None:intergenic
CGCAAGGAACTTGCGTCTAA+TGG 0.372250 4_2:-10134650 Msa0588020:intron
CTAGAGAAAAGCCAGAATAA+AGG 0.372552 4_2:+10131635 None:intergenic
GCTTTGCGCTCTCCATTCAA+TGG 0.378777 4_2:+10133878 None:intergenic
CTCAACCTGTTATGCAAGAA+TGG 0.387119 4_2:-10134118 Msa0588020:CDS
CAATATTCTTTAAACGATGA+AGG 0.393477 4_2:+10133293 None:intergenic
CCGTCTGCCGAATTTGTTGC+TGG 0.396519 4_2:-10136558 Msa0588020:CDS
CATCGCTTATTGGAGCGATA+TGG 0.400187 4_2:-10134080 Msa0588020:CDS
GAGCATGAGAATGAAGAAAC+TGG 0.410340 4_2:-10133341 Msa0588020:CDS
CCCAGTTGGATAATTCTTCA+AGG 0.414735 4_2:+10132209 None:intergenic
ACGCTCCCTCGCAATGCAAT+GGG 0.419172 4_2:-10131929 Msa0588020:CDS
ATTTCTCCGTAGTCTTTGTC+TGG 0.420974 4_2:+10132292 None:intergenic
GTAATGGACATTCACAAAAT+GGG 0.425915 4_2:-10136025 Msa0588020:CDS
TCTGAGGAATTATTAGGAAC+GGG 0.426016 4_2:+10136056 None:intergenic
CCTCTATGTGATGAATAATT+CGG 0.426522 4_2:-10136466 Msa0588020:intron
GCCTTGAAGAATTATCCAAC+TGG 0.429353 4_2:-10132210 Msa0588020:CDS
TCAAACGCTTACGTTGTTGT+TGG 0.432351 4_2:-10138676 Msa0588020:five_prime_UTR
TGATGGAAGGGAGGCAGAAG+AGG 0.435108 4_2:+10138545 None:intergenic
GAGAGAATTTATGAGGATGA+TGG 0.436298 4_2:+10138528 None:intergenic
TAGAGAAAAGCCAGAATAAA+GGG 0.442754 4_2:+10131636 None:intergenic
AAATTGAGAGGAAGAGAAGA+TGG 0.445403 4_2:+10138478 None:intergenic
TGTGTATGAACAACTCCCTT+AGG 0.445619 4_2:+10135799 None:intergenic
CCATGCCACCATACCTTGTA+AGG 0.445720 4_2:+10132169 None:intergenic
GTTGAAATCCAGGGAAATCT+TGG 0.451333 4_2:-10136609 Msa0588020:intron
GATGGAAGGGAGGCAGAAGA+GGG 0.452607 4_2:+10138546 None:intergenic
GTACTTGCGACTTGGTTTAG+TGG 0.452867 4_2:-10136534 Msa0588020:CDS
AAGTACTCCAGCAACAAATT+CGG 0.453295 4_2:+10136551 None:intergenic
TTTCACTTTCACACGTTGGT+TGG 0.457048 4_2:+10138736 None:intergenic
CTAACCTGCACACCAGGAAA+TGG 0.458093 4_2:+10133839 None:intergenic
ACTTTCACACGTTGGTTGGT+TGG 0.458480 4_2:+10138740 None:intergenic
ACATAGAGGAGCTCTACTTC+TGG 0.459113 4_2:+10136480 None:intergenic
TGGTTTCAAAGAATTGGCTT+TGG 0.463672 4_2:+10131719 None:intergenic
TTGTATACTAGCGGGACAAC+AGG 0.464707 4_2:-10135826 Msa0588020:CDS
CATACTTACTCCAGTGAATA+CGG 0.469363 4_2:+10135045 None:intergenic
CCTTGCGCCAGATGCTGAAG+TGG 0.474939 4_2:+10134666 None:intergenic
GACGCTCCCTCGCAATGCAA+TGG 0.475140 4_2:-10131930 Msa0588020:CDS
AAAACCATTTCCTGGTGTGC+AGG 0.476589 4_2:-10133843 Msa0588020:intron
AATTGAGAGGAAGAGAAGAT+GGG 0.482322 4_2:+10138479 None:intergenic
GCATTGTCAAATCCATTGAA+TGG 0.483393 4_2:-10133890 Msa0588020:CDS
AATCTTGGTGGAGCTCGAAT+AGG 0.490823 4_2:-10136594 Msa0588020:CDS
CATTCTTGCATAACAGGTTG+AGG 0.493045 4_2:+10134119 None:intergenic
ATTAACCGGGTGTACATAGT+TGG 0.494598 4_2:+10134724 None:intergenic
GAATAAACTTGCACCTTACA+AGG 0.497001 4_2:-10132182 Msa0588020:intron
TCCTCAGAGAAGAGCAGTAA+TGG 0.497489 4_2:-10136041 Msa0588020:CDS
ATTTGGCTCAGGTGAAGATC+CGG 0.499188 4_2:-10135857 Msa0588020:intron
AATGGTATTTACTGTTCTGA+AGG 0.500792 4_2:+10131759 None:intergenic
GACGATGGATACTTTAAGAC+TGG 0.501182 4_2:-10132941 Msa0588020:CDS
TTGAATGGAGAGCGCAAAGC+AGG 0.502304 4_2:-10133875 Msa0588020:CDS
TTGCTGGAGTACTTGCGACT+TGG 0.503599 4_2:-10136542 Msa0588020:CDS
ATAAGTTTAACCTTATTAGG+AGG 0.504386 4_2:-10131608 Msa0588020:three_prime_UTR
TCAACCTGTTATGCAAGAAT+GGG 0.504435 4_2:-10134117 Msa0588020:CDS
AATATTCTTTAAACGATGAA+GGG 0.504764 4_2:+10133294 None:intergenic
ACTGCAATTTGCGGTGAAGT+AGG 0.505561 4_2:+10138630 None:intergenic
GAATTTATGAGGATGATGGA+AGG 0.507150 4_2:+10138532 None:intergenic
CTCTGAGGAATTATTAGGAA+CGG 0.512730 4_2:+10136055 None:intergenic
ACCGTCGGAAAACCATTTCC+TGG 0.512963 4_2:-10133851 Msa0588020:CDS
CATTCTATTATTCAGATGTG+TGG 0.513048 4_2:-10134155 Msa0588020:intron
TCAGCTTTAGATCCTTCAGT+TGG 0.515164 4_2:+10135079 None:intergenic
AATTTATGAGGATGATGGAA+GGG 0.517301 4_2:+10138533 None:intergenic
TAAGTTTAACCTTATTAGGA+GGG 0.520775 4_2:-10131607 Msa0588020:three_prime_UTR
AAGCAAGAAGCTGCAGCTCA+TGG 0.521419 4_2:-10137148 Msa0588020:CDS
ACACAGAAGCATCCTTGCTC+AGG 0.530891 4_2:-10135779 Msa0588020:intron
GAGCGCAAAGCAGGCACCGT+CGG 0.535518 4_2:-10133866 Msa0588020:CDS
TCGATGTTTCTAGTTTGTCA+TGG 0.542982 4_2:-10133912 Msa0588020:intron
CGGGACAACAGGTAAACCTA+AGG 0.543179 4_2:-10135815 Msa0588020:CDS
AATACAAGGTTATCGTGCTA+TGG 0.543439 4_2:-10134704 Msa0588020:CDS
CAAGAATGGGAATCCATCAC+TGG 0.546151 4_2:-10134104 Msa0588020:CDS
GCTCAACTAACCTGCACACC+AGG 0.548833 4_2:+10133833 None:intergenic
ATTGAGAGGAAGAGAAGATG+GGG 0.549638 4_2:+10138480 None:intergenic
GCAGTTACTACGGATAAAGA+TGG 0.552792 4_2:-10132914 Msa0588020:CDS
TCAGTGGAATTTGGAAGAGA+TGG 0.553750 4_2:-10135114 Msa0588020:CDS
GACTGGAGATGCAGTTACTA+CGG 0.556507 4_2:-10132924 Msa0588020:CDS
CCGAATTATTCATCACATAG+AGG 0.556775 4_2:+10136466 None:intergenic
TTGCCGAAGTTTAGTGTCAG+TGG 0.557108 4_2:-10135130 Msa0588020:CDS
GGTGCTATAACCGTATTCAC+TGG 0.559650 4_2:-10135055 Msa0588020:CDS
TGGTTCTGAGAGAATTTATG+AGG 0.561344 4_2:+10138521 None:intergenic
TTTGTTGAGAGTCTTAAATG+AGG 0.563825 4_2:+10138574 None:intergenic
CCTTCCCCATTGCATTGCGA+GGG 0.567087 4_2:+10131924 None:intergenic
ACCTTCCCCATTGCATTGCG+AGG 0.569506 4_2:+10131923 None:intergenic
ATGTACACCCGGTTAATACA+AGG 0.574328 4_2:-10134718 Msa0588020:CDS
GGCTTACCAGACAAAGACTA+CGG 0.574953 4_2:-10132298 Msa0588020:CDS
CCCTCGCAATGCAATGGGGA+AGG 0.576410 4_2:-10131924 Msa0588020:intron
ACGCAACATTCTGAGACAGT+TGG 0.578421 4_2:+10132325 None:intergenic
TCTGGATAGCTGAGTGCAAG+TGG 0.578460 4_2:+10136498 None:intergenic
CTAGTATACAAAATCAGTGC+CGG 0.583079 4_2:+10135838 None:intergenic
CCACTTCAGCATCTGGCGCA+AGG 0.583841 4_2:-10134666 Msa0588020:CDS
GAAATCCAGGGAAATCTTGG+TGG 0.584081 4_2:-10136606 Msa0588020:intron
AAGTTTAACCTTATTAGGAG+GGG 0.590100 4_2:-10131606 Msa0588020:three_prime_UTR
CAATAAGCGATGTCCAGTGA+TGG 0.591538 4_2:+10134091 None:intergenic
TTATGAGGATGATGGAAGGG+AGG 0.591893 4_2:+10138536 None:intergenic
TTGTGCGATTATCGTGCCAA+AGG 0.592723 4_2:-10132266 Msa0588020:CDS
CCAGCAACAAATTCGGCAGA+CGG 0.593121 4_2:+10136558 None:intergenic
CCTTGAAGAATTATCCAACT+GGG 0.594518 4_2:-10132209 Msa0588020:CDS
CTTGCGACTTGGTTTAGTGG+AGG 0.596081 4_2:-10136531 Msa0588020:CDS
AAGATATCTAATCTCTTGTG+TGG 0.596230 4_2:-10137061 Msa0588020:CDS
AGATGATGAACGAAATTGAG+AGG 0.602992 4_2:+10138466 None:intergenic
GCAATTTGCGGTGAAGTAGG+TGG 0.604783 4_2:+10138633 None:intergenic
CGTGAGTCATATCCAACTGA+AGG 0.605168 4_2:-10135091 Msa0588020:CDS
TACCAACTCGACTAATCGTG+TGG 0.608337 4_2:-10131955 Msa0588020:CDS
ACTGAAGGATCTAAAGCTGA+TGG 0.608878 4_2:-10135076 Msa0588020:CDS
TAATGGACATTCACAAAATG+GGG 0.610443 4_2:-10136024 Msa0588020:CDS
AAGGAATCATTTACAGACGA+TGG 0.612731 4_2:-10132956 Msa0588020:CDS
TTGAGAGGAAGAGAAGATGG+GGG 0.615724 4_2:+10138481 None:intergenic
TCATAAAGCATACCTGAGCA+AGG 0.617886 4_2:+10135767 None:intergenic
AAGTTTATTCTTGGCCCAGT+TGG 0.618670 4_2:+10132195 None:intergenic
TCCCACACGATTAGTCGAGT+TGG 0.618951 4_2:+10131953 None:intergenic
TCCATTACTGCTCTTCTCTG+AGG 0.625180 4_2:+10136040 None:intergenic
ATTCCACTGACACTAAACTT+CGG 0.629573 4_2:+10135127 None:intergenic
GAGAATGAAGAAACTGGAGC+TGG 0.632470 4_2:-10133335 Msa0588020:CDS
AATTCTTCAAGGCTTAGAGG+AGG 0.633061 4_2:+10132220 None:intergenic
TCAATCTACAACATATATGG+AGG 0.639302 4_2:-10137188 Msa0588020:CDS
GGGACAACAGGTAAACCTAA+GGG 0.643408 4_2:-10135814 Msa0588020:CDS
ACGATAACCTTGTATTAACC+GGG 0.652167 4_2:+10134711 None:intergenic
TTACAAGCAACTCATCTCGT+CGG 0.660566 4_2:-10137089 Msa0588020:CDS
AATGCGGATATAATCAAGAG+TGG 0.667412 4_2:-10132505 Msa0588020:CDS
GCGGATATAATCAAGAGTGG+TGG 0.670937 4_2:-10132502 Msa0588020:CDS
AGAATATTGGAAACTTCCTG+AGG 0.673119 4_2:-10133279 Msa0588020:intron
ACCAACTCGACTAATCGTGT+GGG 0.673721 4_2:-10131954 Msa0588020:CDS
AGGTTCCAACTATGTACACC+CGG 0.678598 4_2:-10134729 Msa0588020:CDS
GAGGAATTATTAGGAACGGG+CGG 0.680276 4_2:+10136059 None:intergenic
CTTGTGTGGAAATGATGTGA+AGG 0.681768 4_2:-10137047 Msa0588020:intron
CGCTCCCTCGCAATGCAATG+GGG 0.686193 4_2:-10131928 Msa0588020:CDS
AACAGGTTGAGGAAGTGCAG+AGG 0.696442 4_2:+10134130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAAAAAAAAGTTCA+TGG - chr4_2:10132301-10132320 Msa0588020:CDS 10.0%
!!! ATTTTAAAAAAAAAGTTCAT+GGG - chr4_2:10132302-10132321 Msa0588020:CDS 10.0%
!! ATTTGAAAATTTCATATAAA+AGG + chr4_2:10133931-10133950 None:intergenic 10.0%
!! CTTAATAAAAATTTGATTAT+AGG - chr4_2:10134091-10134110 Msa0588020:CDS 10.0%
!!! TTATAATTTTTCTTGATTTT+AGG - chr4_2:10134674-10134693 Msa0588020:CDS 10.0%
!!! TCTAAATAATTTTTTAATGA+AGG - chr4_2:10135510-10135529 Msa0588020:intron 10.0%
!!! AAATGGATTTTTTTTTACTA+TGG - chr4_2:10131966-10131985 Msa0588020:intron 15.0%
!!! AATTTGATTTAATATGTTGT+TGG - chr4_2:10132047-10132066 Msa0588020:intron 15.0%
!!! ATTTGATTTAATATGTTGTT+GGG - chr4_2:10132048-10132067 Msa0588020:intron 15.0%
!! ATATTAAGTATTCAATTTCA+TGG + chr4_2:10132393-10132412 None:intergenic 15.0%
!! TAAATTATTCTTATAAGTGT+TGG - chr4_2:10132446-10132465 Msa0588020:intron 15.0%
!!! TTTTGTAATTTCTCTTATTT+TGG - chr4_2:10132513-10132532 Msa0588020:CDS 15.0%
!!! TTTGTAATTTCTCTTATTTT+GGG - chr4_2:10132514-10132533 Msa0588020:intron 15.0%
!! GAATAACTTTATATAAATGT+GGG + chr4_2:10133508-10133527 None:intergenic 15.0%
!! AGAATAACTTTATATAAATG+TGG + chr4_2:10133509-10133528 None:intergenic 15.0%
!! TGCATATAAAAAATATTTCA+TGG + chr4_2:10134773-10134792 None:intergenic 15.0%
!!! AAAATTGATATTTTCTTTTC+TGG + chr4_2:10135020-10135039 None:intergenic 15.0%
!! AAAAACTTATATGTTCAAAA+TGG + chr4_2:10135068-10135087 None:intergenic 15.0%
!! TAAATAATTTACAACCTTAT+TGG - chr4_2:10137654-10137673 Msa0588020:intron 15.0%
!! ATATAAAAACATACAAACAA+TGG + chr4_2:10138116-10138135 None:intergenic 15.0%
!! TGTTAACAATTTGATTAATT+TGG - chr4_2:10138777-10138796 Msa0588020:five_prime_UTR 15.0%
!! TAATTAAACAAAACAAGACA+AGG + chr4_2:10131942-10131961 None:intergenic 20.0%
!!! TTTTTGCTCATATGTTTTAT+TGG - chr4_2:10131996-10132015 Msa0588020:intron 20.0%
!!! TTTTGCTCATATGTTTTATT+GGG - chr4_2:10131997-10132016 Msa0588020:intron 20.0%
!!! TTTGATTTAATATGTTGTTG+GGG - chr4_2:10132049-10132068 Msa0588020:intron 20.0%
!!! TACAATTTCAAACACTATTT+TGG + chr4_2:10132262-10132281 None:intergenic 20.0%
!!! AAATAGTGTTTGAAATTGTA+AGG - chr4_2:10132262-10132281 Msa0588020:CDS 20.0%
!! TAGCTTATAATTAACAGATT+TGG - chr4_2:10132633-10132652 Msa0588020:intron 20.0%
!! AGCTTATAATTAACAGATTT+GGG - chr4_2:10132634-10132653 Msa0588020:intron 20.0%
!! TAACTAAATAAATGTATCTG+CGG - chr4_2:10132856-10132875 Msa0588020:intron 20.0%
!! ATCTAATGAATTCATATGTA+AGG - chr4_2:10133014-10133033 Msa0588020:intron 20.0%
!! AGATTGAGATACTATATAAT+AGG + chr4_2:10133058-10133077 None:intergenic 20.0%
!!! TTCTTTCTTACCTTTTATTA+TGG - chr4_2:10133465-10133484 Msa0588020:intron 20.0%
!!! TTTGCTATTTCCATAATAAA+AGG + chr4_2:10133478-10133497 None:intergenic 20.0%
!! TTTGTTTAGTCAATCATTTA+TGG - chr4_2:10133626-10133645 Msa0588020:intron 20.0%
!!! ATATGAAATTTTCAAATAGC+TGG - chr4_2:10133934-10133953 Msa0588020:intron 20.0%
!! AAAGCATAATTAAAGCATAA+AGG + chr4_2:10134060-10134079 None:intergenic 20.0%
!!! TATGCTTTAATTATGCTTTT+TGG - chr4_2:10134061-10134080 Msa0588020:intron 20.0%
!! AGATTATATACAAAAAACCA+AGG + chr4_2:10135293-10135312 None:intergenic 20.0%
!!! ATGATTGTAAAACATGTTTT+CGG - chr4_2:10135473-10135492 Msa0588020:intron 20.0%
!!! ACTTAATCAATGTTTCTTTT+AGG - chr4_2:10135740-10135759 Msa0588020:intron 20.0%
!!! CTTAATCAATGTTTCTTTTA+GGG - chr4_2:10135741-10135760 Msa0588020:intron 20.0%
!!! AATAAAAAAGGGTATATTAG+TGG + chr4_2:10136576-10136595 None:intergenic 20.0%
!! TCATATATTACTTTCTTGAA+TGG + chr4_2:10136747-10136766 None:intergenic 20.0%
!! AATATTCTTTAAACGATGAA+GGG + chr4_2:10136968-10136987 None:intergenic 20.0%
!!! AATGTTTTCTACTTTTTATC+AGG - chr4_2:10137727-10137746 Msa0588020:intron 20.0%
!! AATTGAATCAGTAATATTAG+AGG - chr4_2:10137801-10137820 Msa0588020:intron 20.0%
!! TAACAAAAACTAACAATCAT+GGG + chr4_2:10137849-10137868 None:intergenic 20.0%
!! TTAACAAAAACTAACAATCA+TGG + chr4_2:10137850-10137869 None:intergenic 20.0%
!! TAAACTGTACAACTATATAA+GGG + chr4_2:10137877-10137896 None:intergenic 20.0%
!! ATAAACTGTACAACTATATA+AGG + chr4_2:10137878-10137897 None:intergenic 20.0%
!!! TGTATGTTTTTATATGTATG+TGG - chr4_2:10138121-10138140 Msa0588020:intron 20.0%
!! TAACTATGATAAATGTAAGA+TGG + chr4_2:10138227-10138246 None:intergenic 20.0%
!! TTCATTGCAAAATATTCTTT+AGG - chr4_2:10138412-10138431 Msa0588020:intron 20.0%
!! ACAATAAGTTTAACCTTATT+AGG - chr4_2:10138648-10138667 Msa0588020:five_prime_UTR 20.0%
!!! ATAGCATTTTTATATTCATG+AGG - chr4_2:10138692-10138711 Msa0588020:five_prime_UTR 20.0%
!!! TAGCATTTTTATATTCATGA+GGG - chr4_2:10138693-10138712 Msa0588020:five_prime_UTR 20.0%
! CTATAAAAAACTGCAATTTG+CGG + chr4_2:10131641-10131660 None:intergenic 25.0%
!!! CTTGTTTTTGTTACTTACAA+TGG - chr4_2:10131848-10131867 Msa0588020:intron 25.0%
!!! TTTGCTCATATGTTTTATTG+GGG - chr4_2:10131998-10132017 Msa0588020:intron 25.0%
! ATCTCATGCATGATTAATAA+TGG - chr4_2:10132215-10132234 Msa0588020:CDS 25.0%
! AAAAAAAAGTTCATGGGAAT+TGG - chr4_2:10132308-10132327 Msa0588020:CDS 25.0%
!! TTGAAAAGTACACTAACATA+TGG + chr4_2:10132364-10132383 None:intergenic 25.0%
!!! TATTCTTATAAGTGTTGGTA+TGG - chr4_2:10132451-10132470 Msa0588020:intron 25.0%
! GCTTATAATTAACAGATTTG+GGG - chr4_2:10132635-10132654 Msa0588020:intron 25.0%
! ATGTTGAAAGTTGAAATCTA+AGG + chr4_2:10132776-10132795 None:intergenic 25.0%
!! CTATTTGGTATTTTACTCAA+GGG + chr4_2:10132942-10132961 None:intergenic 25.0%
!! TCTATTTGGTATTTTACTCA+AGG + chr4_2:10132943-10132962 None:intergenic 25.0%
! TGAACAAGAAGATATCTATT+TGG + chr4_2:10132957-10132976 None:intergenic 25.0%
! AAATAGATATCTTCTTGTTC+AGG - chr4_2:10132956-10132975 Msa0588020:CDS 25.0%
! ATCTCAATCTACAACATATA+TGG - chr4_2:10133068-10133087 Msa0588020:intron 25.0%
!!! CTTATTTTCATAAGTTCTCT+AGG - chr4_2:10133418-10133437 Msa0588020:intron 25.0%
!! ATTTTCCATTGACATTATCT+TGG - chr4_2:10133903-10133922 Msa0588020:intron 25.0%
! TTCAAAAATAACCTTACCTA+CGG - chr4_2:10133971-10133990 Msa0588020:intron 25.0%
!! AAATAGTCCAACTAATTTGT+TGG + chr4_2:10134022-10134041 None:intergenic 25.0%
!!! AAATTGAGATGAGGTTTTAT+TGG + chr4_2:10134171-10134190 None:intergenic 25.0%
! AATATGGAAAAATTGAGATG+AGG + chr4_2:10134180-10134199 None:intergenic 25.0%
!!! ACATTTTCAGCTTCTAAAAA+TGG - chr4_2:10134314-10134333 Msa0588020:intron 25.0%
!!! CTTTTGTTTTTCGTATCATT+TGG - chr4_2:10134385-10134404 Msa0588020:intron 25.0%
! GGTATGCTTTATGATTTATT+TGG - chr4_2:10134501-10134520 Msa0588020:intron 25.0%
! CATGTACTTCATATATGTTA+AGG + chr4_2:10134904-10134923 None:intergenic 25.0%
!! AATATCAATTTTCGTACAAG+TGG - chr4_2:10135028-10135047 Msa0588020:intron 25.0%
!! TCAAAATGGATACTATTTTG+AGG + chr4_2:10135054-10135073 None:intergenic 25.0%
!!! AAGATAATTTATTTTCAGGC+AGG + chr4_2:10135320-10135339 None:intergenic 25.0%
!!! GGGAAAGATAATTTATTTTC+AGG + chr4_2:10135324-10135343 None:intergenic 25.0%
! GAAAATAAATTATCTTTCCC+TGG - chr4_2:10135324-10135343 Msa0588020:intron 25.0%
! AAATTACAGTTCGTTGTAAA+TGG + chr4_2:10135451-10135470 None:intergenic 25.0%
! CCAAAGATTAAAATGTTTGA+AGG + chr4_2:10135651-10135670 None:intergenic 25.0%
!!! CCTTCAAACATTTTAATCTT+TGG - chr4_2:10135648-10135667 Msa0588020:intron 25.0%
!! ATCTTTGGAAAGAAGATAAA+TGG - chr4_2:10135663-10135682 Msa0588020:intron 25.0%
! CATCGATACAATAATGTTTA+AGG + chr4_2:10136333-10136352 None:intergenic 25.0%
! CAATATTCTTTAAACGATGA+AGG + chr4_2:10136969-10136988 None:intergenic 25.0%
! CTTCATCGTTTAAAGAATAT+TGG - chr4_2:10136967-10136986 Msa0588020:intron 25.0%
!!! CACATTATTTTAGTTACTTG+AGG - chr4_2:10137145-10137164 Msa0588020:CDS 25.0%
!! AAGATTCTAAGGATAGAAAA+CGG - chr4_2:10137223-10137242 Msa0588020:intron 25.0%
!!! AATTTGTATTTTTTCCATGC+AGG - chr4_2:10137275-10137294 Msa0588020:intron 25.0%
!! GATGGATATTTCATCATTTT+AGG - chr4_2:10137363-10137382 Msa0588020:intron 25.0%
!! TATTTTGCAATGAAATGACA+AGG + chr4_2:10138406-10138425 None:intergenic 25.0%
!! TTGCAAAATATTCTTTAGGA+AGG - chr4_2:10138416-10138435 Msa0588020:intron 25.0%
! ACCATTAGAACATTATTTAC+TGG - chr4_2:10138517-10138536 Msa0588020:CDS 25.0%
! ATAAGTTTAACCTTATTAGG+AGG - chr4_2:10138651-10138670 Msa0588020:five_prime_UTR 25.0%
! TAAGTTTAACCTTATTAGGA+GGG - chr4_2:10138652-10138671 Msa0588020:five_prime_UTR 25.0%
!!! TTCTTTTAGTTCCATGAGTT+AGG - chr4_2:10131486-10131505 Msa0588020:three_prime_UTR 30.0%
GGAACTCATTGAATTGATTA+TGG + chr4_2:10131667-10131686 None:intergenic 30.0%
TTTGTTGAGAGTCTTAAATG+AGG + chr4_2:10131688-10131707 None:intergenic 30.0%
!! AATTTATGAGGATGATGGAA+GGG + chr4_2:10131729-10131748 None:intergenic 30.0%
!!! GGTGGTGAATTTTTTTATCT+TGG - chr4_2:10132019-10132038 Msa0588020:intron 30.0%
! ATGTCTTCAATTAGAAGTGT+TGG - chr4_2:10132173-10132192 Msa0588020:intron 30.0%
! TTAATAATGGCTGCATGTTT+TGG - chr4_2:10132228-10132247 Msa0588020:CDS 30.0%
TGAAATTGCATTGCATTGTA+AGG + chr4_2:10132545-10132564 None:intergenic 30.0%
TTCAGAAGCTATTTACTAAG+AGG - chr4_2:10132561-10132580 Msa0588020:intron 30.0%
TCAGAAGCTATTTACTAAGA+GGG - chr4_2:10132562-10132581 Msa0588020:intron 30.0%
TTCAACAACCATTAGAAGAA+AGG + chr4_2:10132590-10132609 None:intergenic 30.0%
TGAACAATAAGCACTATGTT+TGG + chr4_2:10132680-10132699 None:intergenic 30.0%
! AACATTGATAATTAGTGCTC+TGG - chr4_2:10132735-10132754 Msa0588020:intron 30.0%
TTTACGCTCTTAATTGTCTT+AGG + chr4_2:10132806-10132825 None:intergenic 30.0%
! AGACAATTAAGAGCGTAAAA+AGG - chr4_2:10132807-10132826 Msa0588020:intron 30.0%
TCAATCTACAACATATATGG+AGG - chr4_2:10133071-10133090 Msa0588020:intron 30.0%
AAGATATCTAATCTCTTGTG+TGG - chr4_2:10133198-10133217 Msa0588020:intron 30.0%
GGAACTTCTGTATATCATAT+TGG + chr4_2:10133315-10133334 None:intergenic 30.0%
TGATATACAGAAGTTCCTAT+AGG - chr4_2:10133318-10133337 Msa0588020:CDS 30.0%
!! TTTCATAAGTTCTCTAGGAT+AGG - chr4_2:10133423-10133442 Msa0588020:intron 30.0%
CCTCTATGTGATGAATAATT+CGG - chr4_2:10133793-10133812 Msa0588020:intron 30.0%
ATGAATAATTCGGTATGCTT+TGG - chr4_2:10133803-10133822 Msa0588020:intron 30.0%
CTTGTGAACATTAAGAACTA+AGG - chr4_2:10133873-10133892 Msa0588020:CDS 30.0%
TCAAAAATAACCTTACCTAC+GGG - chr4_2:10133972-10133991 Msa0588020:intron 30.0%
TATGTTGCCAACAAATTAGT+TGG - chr4_2:10134012-10134031 Msa0588020:intron 30.0%
!! AGTAATGGACATTCACAAAA+TGG - chr4_2:10134233-10134252 Msa0588020:intron 30.0%
!! GTAATGGACATTCACAAAAT+GGG - chr4_2:10134234-10134253 Msa0588020:intron 30.0%
! TAATGGACATTCACAAAATG+GGG - chr4_2:10134235-10134254 Msa0588020:intron 30.0%
! TTGATCTTTCAATGTTTTCC+GGG + chr4_2:10134283-10134302 None:intergenic 30.0%
! CTTGATCTTTCAATGTTTTC+CGG + chr4_2:10134284-10134303 None:intergenic 30.0%
GACAAAGTAGAATACTATCT+TGG - chr4_2:10134336-10134355 Msa0588020:intron 30.0%
ATTTCATGGATATGATGTAG+TGG + chr4_2:10134759-10134778 None:intergenic 30.0%
ATATATGAAGTACATGTCCA+CGG - chr4_2:10134908-10134927 Msa0588020:intron 30.0%
AAGGAAAAAGAAAATTACCG+TGG + chr4_2:10134972-10134991 None:intergenic 30.0%
TTGCTATGTAAGAAGTGAAA+AGG + chr4_2:10134991-10135010 None:intergenic 30.0%
! AGAATCTAATGTCTTGTTCA+AGG - chr4_2:10135098-10135117 Msa0588020:CDS 30.0%
CATTGAGAAGATCTATGATA+TGG - chr4_2:10135252-10135271 Msa0588020:intron 30.0%
!! CTTTTAGGGATTGTTTAGAT+TGG - chr4_2:10135755-10135774 Msa0588020:intron 30.0%
! ATGTCATAAGCTATTTCCAT+AGG + chr4_2:10135791-10135810 None:intergenic 30.0%
AATAAGCTGAAAACAGCATA+TGG + chr4_2:10135816-10135835 None:intergenic 30.0%
!!! CAGATTTTTGAGATTGAGAA+TGG + chr4_2:10136075-10136094 None:intergenic 30.0%
CACACATCTGAATAATAGAA+TGG + chr4_2:10136106-10136125 None:intergenic 30.0%
CATTCTATTATTCAGATGTG+TGG - chr4_2:10136104-10136123 Msa0588020:CDS 30.0%
TTTCTGTGATTACAAGCAAA+TGG + chr4_2:10136463-10136482 None:intergenic 30.0%
TTGCTTGTAATCACAGAAAA+TGG - chr4_2:10136464-10136483 Msa0588020:intron 30.0%
CGTGGAGATACAATAAAAAA+GGG + chr4_2:10136587-10136606 None:intergenic 30.0%
TCGTGGAGATACAATAAAAA+AGG + chr4_2:10136588-10136607 None:intergenic 30.0%
TCCACTAACTATTACTTGAA+AGG - chr4_2:10136612-10136631 Msa0588020:intron 30.0%
! TCCTTTCAAGTAATAGTTAG+TGG + chr4_2:10136616-10136635 None:intergenic 30.0%
! GTATACTCAACAGTTTTCTT+TGG - chr4_2:10136675-10136694 Msa0588020:intron 30.0%
! CTCATATTAAGTGTTGTTCA+AGG + chr4_2:10136713-10136732 None:intergenic 30.0%
TTAATGCTCAATGTGAAAGA+TGG - chr4_2:10136843-10136862 Msa0588020:intron 30.0%
!! TGAGGACATAATTTGTTCTA+AGG - chr4_2:10137163-10137182 Msa0588020:CDS 30.0%
! GTTTTCTATCCTTAGAATCT+TGG + chr4_2:10137224-10137243 None:intergenic 30.0%
!!! TTTCATCATTTTAGGACGTA+AGG - chr4_2:10137371-10137390 Msa0588020:intron 30.0%
ATTTCTCTAAGTATGATGTG+TGG - chr4_2:10137400-10137419 Msa0588020:intron 30.0%
ACATCGTAGGAATTCAAATT+TGG + chr4_2:10137447-10137466 None:intergenic 30.0%
AAATGAAAAGATCCATCTCA+AGG + chr4_2:10137473-10137492 None:intergenic 30.0%
!! TAGCAATTTGCTGGTATATA+AGG + chr4_2:10137610-10137629 None:intergenic 30.0%
CTTAGTTATTAGCAATTTGC+TGG + chr4_2:10137619-10137638 None:intergenic 30.0%
! CTACTATTTTGTTGCCAATA+AGG + chr4_2:10137671-10137690 None:intergenic 30.0%
TAGTAGAAGTTAGATTGTGA+TGG - chr4_2:10137685-10137704 Msa0588020:intron 30.0%
GTAGAAAACATTTACTCAGT+AGG + chr4_2:10137719-10137738 None:intergenic 30.0%
! CTTTTTATCAGGTACTAATG+CGG - chr4_2:10137738-10137757 Msa0588020:intron 30.0%
!!! TCTTTATTTTGCTTCTCCTT+TGG + chr4_2:10138012-10138031 None:intergenic 30.0%
AATGGTATTTACTGTTCTGA+AGG + chr4_2:10138503-10138522 None:intergenic 30.0%
GCCAGTAAATAATGTTCTAA+TGG + chr4_2:10138521-10138540 None:intergenic 30.0%
! GAAAACTGGTTTCAAAGAAT+TGG + chr4_2:10138549-10138568 None:intergenic 30.0%
AAAATAGAAGCCCTTTATTC+TGG - chr4_2:10138613-10138632 Msa0588020:five_prime_UTR 30.0%
TAGAGAAAAGCCAGAATAAA+GGG + chr4_2:10138626-10138645 None:intergenic 30.0%
AAGTTTAACCTTATTAGGAG+GGG - chr4_2:10138653-10138672 Msa0588020:five_prime_UTR 30.0%
!!! ATTTTTTTCCCCTCCTAATA+AGG + chr4_2:10138664-10138683 None:intergenic 30.0%
!!! GTTTGGTTTTTCCTAACTCA+TGG + chr4_2:10131500-10131519 None:intergenic 35.0%
! TGTTTTTCACTTTCACACGT+TGG + chr4_2:10131530-10131549 None:intergenic 35.0%
!! GAATTTATGAGGATGATGGA+AGG + chr4_2:10131730-10131749 None:intergenic 35.0%
GAGAGAATTTATGAGGATGA+TGG + chr4_2:10131734-10131753 None:intergenic 35.0%
!! TGGTTCTGAGAGAATTTATG+AGG + chr4_2:10131741-10131760 None:intergenic 35.0%
AATTGAGAGGAAGAGAAGAT+GGG + chr4_2:10131783-10131802 None:intergenic 35.0%
AAATTGAGAGGAAGAGAAGA+TGG + chr4_2:10131784-10131803 None:intergenic 35.0%
AGATGATGAACGAAATTGAG+AGG + chr4_2:10131796-10131815 None:intergenic 35.0%
!! AATTAGAAGTGTTGGTGCTA+CGG - chr4_2:10132181-10132200 Msa0588020:intron 35.0%
TTCATGGGAATTGGAAATTG+TGG - chr4_2:10132317-10132336 Msa0588020:CDS 35.0%
TCATGGGAATTGGAAATTGT+GGG - chr4_2:10132318-10132337 Msa0588020:CDS 35.0%
! ACAGACAGTTTGCAGATTTT+GGG - chr4_2:10132483-10132502 Msa0588020:CDS 35.0%
TTGTTCAAAGCTGAGTTGTT+TGG - chr4_2:10132693-10132712 Msa0588020:intron 35.0%
! AAGAGCGTAAAAAGGTCAAT+TGG - chr4_2:10132815-10132834 Msa0588020:intron 35.0%
TTAGTTAACGTTCAACCCAA+CGG + chr4_2:10132843-10132862 None:intergenic 35.0%
GGAATAGTAAAGGAATGTCA+AGG + chr4_2:10133250-10133269 None:intergenic 35.0%
TCCTTTACTATTCCCTTTGT+AGG - chr4_2:10133256-10133275 Msa0588020:intron 35.0%
TCCTACAAAGGGAATAGTAA+AGG + chr4_2:10133260-10133279 None:intergenic 35.0%
ACGCAACTTAATCCTACAAA+GGG + chr4_2:10133271-10133290 None:intergenic 35.0%
TACGCAACTTAATCCTACAA+AGG + chr4_2:10133272-10133291 None:intergenic 35.0%
TTGAATGCTTAGTCTATTGC+TGG - chr4_2:10133551-10133570 Msa0588020:intron 35.0%
TGAATGCTTAGTCTATTGCT+GGG - chr4_2:10133552-10133571 Msa0588020:intron 35.0%
! ATTTATGGCGTTGAAATCCA+GGG - chr4_2:10133641-10133660 Msa0588020:intron 35.0%
AAGTACTCCAGCAACAAATT+CGG + chr4_2:10133711-10133730 None:intergenic 35.0%
CCGAATTATTCATCACATAG+AGG + chr4_2:10133796-10133815 None:intergenic 35.0%
AGGTACCAAGATAATGTCAA+TGG + chr4_2:10133911-10133930 None:intergenic 35.0%
TCTGAGGAATTATTAGGAAC+GGG + chr4_2:10134206-10134225 None:intergenic 35.0%
! CTCTGAGGAATTATTAGGAA+CGG + chr4_2:10134207-10134226 None:intergenic 35.0%
! CTCTTCTCTGAGGAATTATT+AGG + chr4_2:10134212-10134231 None:intergenic 35.0%
!! TTTTTCGTATCATTTGGCTC+AGG - chr4_2:10134391-10134410 Msa0588020:intron 35.0%
CTAGTATACAAAATCAGTGC+CGG + chr4_2:10134424-10134443 None:intergenic 35.0%
!!! GCACTGATTTTGTATACTAG+CGG - chr4_2:10134424-10134443 Msa0588020:intron 35.0%
!!! CACTGATTTTGTATACTAGC+GGG - chr4_2:10134425-10134444 Msa0588020:intron 35.0%
TATATGAAGTACATGTCCAC+GGG - chr4_2:10134909-10134928 Msa0588020:intron 35.0%
ATTCCACTGACACTAAACTT+CGG + chr4_2:10135135-10135154 None:intergenic 35.0%
AGTTTAGTGTCAGTGGAATT+TGG - chr4_2:10135136-10135155 Msa0588020:CDS 35.0%
CATACTTACTCCAGTGAATA+CGG + chr4_2:10135217-10135236 None:intergenic 35.0%
CTTCGTATGATTATACTCCA+GGG + chr4_2:10135344-10135363 None:intergenic 35.0%
TCTTCGTATGATTATACTCC+AGG + chr4_2:10135345-10135364 None:intergenic 35.0%
CAACAAAGAACACCATCATA+TGG + chr4_2:10135379-10135398 None:intergenic 35.0%
ACGATAACCTTGTATTAACC+GGG + chr4_2:10135551-10135570 None:intergenic 35.0%
CACGATAACCTTGTATTAAC+CGG + chr4_2:10135552-10135571 None:intergenic 35.0%
AATACAAGGTTATCGTGCTA+TGG - chr4_2:10135555-10135574 Msa0588020:intron 35.0%
GATTGGATTATTTGAGCCTA+TGG - chr4_2:10135772-10135791 Msa0588020:intron 35.0%
! AGCTATCTTTGAAGAGCTTA+TGG + chr4_2:10135840-10135859 None:intergenic 35.0%
ACTAAGTTGTTTATCCAAGC+AGG - chr4_2:10135979-10135998 Msa0588020:CDS 35.0%
CTAAGTTGTTTATCCAAGCA+GGG - chr4_2:10135980-10135999 Msa0588020:CDS 35.0%
!! GTATGTTGATTTACCATGCA+TGG - chr4_2:10136011-10136030 Msa0588020:CDS 35.0%
TCAACCTGTTATGCAAGAAT+GGG - chr4_2:10136142-10136161 Msa0588020:CDS 35.0%
!! TCGATGTTTCTAGTTTGTCA+TGG - chr4_2:10136347-10136366 Msa0588020:intron 35.0%
GCATTGTCAAATCCATTGAA+TGG - chr4_2:10136369-10136388 Msa0588020:intron 35.0%
! AATAGTTAGTGGAGTATTCG+TGG + chr4_2:10136605-10136624 None:intergenic 35.0%
TGTGAAAGATGGTGATATCT+TGG - chr4_2:10136854-10136873 Msa0588020:intron 35.0%
AGAATATTGGAAACTTCCTG+AGG - chr4_2:10136980-10136999 Msa0588020:intron 35.0%
GTGCGATGTTATGATTGTAA+TGG + chr4_2:10137128-10137147 None:intergenic 35.0%
! TTTTTCCATGCAGGTAACAA+AGG - chr4_2:10137284-10137303 Msa0588020:intron 35.0%
AAGGAATCATTTACAGACGA+TGG - chr4_2:10137303-10137322 Msa0588020:intron 35.0%
! CCTTGTTGGAAGATTCATTT+TGG + chr4_2:10137498-10137517 None:intergenic 35.0%
CCAAAATGAATCTTCCAACA+AGG - chr4_2:10137495-10137514 Msa0588020:intron 35.0%
GTTTCACCAAAAAAAGGAGA+GGG + chr4_2:10137577-10137596 None:intergenic 35.0%
TGTTTCACCAAAAAAAGGAG+AGG + chr4_2:10137578-10137597 None:intergenic 35.0%
GGTTGTGTTTCACCAAAAAA+AGG + chr4_2:10137583-10137602 None:intergenic 35.0%
TTTGCTGGTATATAAGGAGA+GGG + chr4_2:10137604-10137623 None:intergenic 35.0%
! ATTTGCTGGTATATAAGGAG+AGG + chr4_2:10137605-10137624 None:intergenic 35.0%
AATGCGGATATAATCAAGAG+TGG - chr4_2:10137754-10137773 Msa0588020:intron 35.0%
TCAGTAATATTAGAGGCAAG+TGG - chr4_2:10137808-10137827 Msa0588020:intron 35.0%
GATAATTCTTCAAGGCTTAG+AGG + chr4_2:10138045-10138064 None:intergenic 35.0%
CCTTGAAGAATTATCCAACT+GGG - chr4_2:10138050-10138069 Msa0588020:intron 35.0%
GTAAGGTGCAAGTTTATTCT+TGG + chr4_2:10138076-10138095 None:intergenic 35.0%
GAATAAACTTGCACCTTACA+AGG - chr4_2:10138077-10138096 Msa0588020:intron 35.0%
TGTGTTTACGACAGCATATA+AGG + chr4_2:10138374-10138393 None:intergenic 35.0%
! CGTTCTCTGTTTGAAATTTC+AGG - chr4_2:10138448-10138467 Msa0588020:intron 35.0%
TAAAAAAGAGCTGAAGAAGC+TGG - chr4_2:10138475-10138494 Msa0588020:CDS 35.0%
! TGGTTTCAAAGAATTGGCTT+TGG + chr4_2:10138543-10138562 None:intergenic 35.0%
!!! CTTTGAAACCAGTTTTCAGA+TGG - chr4_2:10138552-10138571 Msa0588020:CDS 35.0%
! GATTTTCACCATCTGAAAAC+TGG + chr4_2:10138563-10138582 None:intergenic 35.0%
CTAGAGAAAAGCCAGAATAA+AGG + chr4_2:10138627-10138646 None:intergenic 35.0%
TTTCACTTTCACACGTTGGT+TGG + chr4_2:10131526-10131545 None:intergenic 40.0%
TCAAACGCTTACGTTGTTGT+TGG - chr4_2:10131583-10131602 Msa0588020:three_prime_UTR 40.0%
GGGTGTAAGAAGAAAAATGG+TGG + chr4_2:10131761-10131780 None:intergenic 40.0%
! TGGGGGTGTAAGAAGAAAAA+TGG + chr4_2:10131764-10131783 None:intergenic 40.0%
ATTGAGAGGAAGAGAAGATG+GGG + chr4_2:10131782-10131801 None:intergenic 40.0%
!! GCTCATATGTTTTATTGGGG+TGG - chr4_2:10132001-10132020 Msa0588020:intron 40.0%
! GACAGACAGTTTGCAGATTT+TGG - chr4_2:10132482-10132501 Msa0588020:CDS 40.0%
AGAGGGTTCCTTTCTTCTAA+TGG - chr4_2:10132579-10132598 Msa0588020:intron 40.0%
! ACTATGTTTGGAGTTCACGT+GGG + chr4_2:10132668-10132687 None:intergenic 40.0%
! AAAAGGTCAATTGGTTCCGT+TGG - chr4_2:10132824-10132843 Msa0588020:intron 40.0%
! AAAGGTCAATTGGTTCCGTT+GGG - chr4_2:10132825-10132844 Msa0588020:intron 40.0%
! TGCGGTGATTTTTCTCTACA+GGG - chr4_2:10132874-10132893 Msa0588020:intron 40.0%
! TTTTCTCTACAGGGTCATCT+TGG - chr4_2:10132883-10132902 Msa0588020:intron 40.0%
! CAGGCTTTATAATGCAGACA+TGG - chr4_2:10132975-10132994 Msa0588020:intron 40.0%
TTACAAGCAACTCATCTCGT+CGG - chr4_2:10133170-10133189 Msa0588020:intron 40.0%
CTTGTGTGGAAATGATGTGA+AGG - chr4_2:10133212-10133231 Msa0588020:intron 40.0%
GTTGGCAGATAAACTCCTAT+AGG + chr4_2:10133336-10133355 None:intergenic 40.0%
ACTGTTTGTGGAAACAGCTT+AGG - chr4_2:10133371-10133390 Msa0588020:intron 40.0%
! CATTTATGGCGTTGAAATCC+AGG - chr4_2:10133640-10133659 Msa0588020:intron 40.0%
GTTGAAATCCAGGGAAATCT+TGG - chr4_2:10133650-10133669 Msa0588020:intron 40.0%
!!! CTTTTTTCTTCCCGTAGGTA+AGG + chr4_2:10133985-10134004 None:intergenic 40.0%
ACCTACGGGAAGAAAAAAGT+TGG - chr4_2:10133986-10134005 Msa0588020:intron 40.0%
! TGATGCAGACAGTATTTTCC+CGG - chr4_2:10134262-10134281 Msa0588020:intron 40.0%
TGTGTATGAACAACTCCCTT+AGG + chr4_2:10134463-10134482 None:intergenic 40.0%
TCATAAAGCATACCTGAGCA+AGG + chr4_2:10134495-10134514 None:intergenic 40.0%
TCCAAACCTTGACAAAAGCA+TGG - chr4_2:10134697-10134716 Msa0588020:CDS 40.0%
! CCAAACCTTGACAAAAGCAT+GGG - chr4_2:10134698-10134717 Msa0588020:CDS 40.0%
! CAAACCTTGACAAAAGCATG+GGG - chr4_2:10134699-10134718 Msa0588020:CDS 40.0%
! AAACCTTGACAAAAGCATGG+GGG - chr4_2:10134700-10134719 Msa0588020:CDS 40.0%
GTAAACCATTGAAAATCCCG+TGG + chr4_2:10134928-10134947 None:intergenic 40.0%
! CGGGATTTTCAATGGTTTAC+TGG - chr4_2:10134928-10134947 Msa0588020:intron 40.0%
TCAGTGGAATTTGGAAGAGA+TGG - chr4_2:10135145-10135164 Msa0588020:intron 40.0%
!! TCAGCTTTAGATCCTTCAGT+TGG + chr4_2:10135183-10135202 None:intergenic 40.0%
! ACTGAAGGATCTAAAGCTGA+TGG - chr4_2:10135183-10135202 Msa0588020:intron 40.0%
ATCATACGAAGACCGCATAT+CGG - chr4_2:10135353-10135372 Msa0588020:intron 40.0%
ATTAACCGGGTGTACATAGT+TGG + chr4_2:10135538-10135557 None:intergenic 40.0%
ATGTACACCCGGTTAATACA+AGG - chr4_2:10135541-10135560 Msa0588020:intron 40.0%
GGTAAATCAACATACCACTG+TGG + chr4_2:10136006-10136025 None:intergenic 40.0%
AATTGCAAGTGAACCATGCA+TGG + chr4_2:10136027-10136046 None:intergenic 40.0%
CATTCTTGCATAACAGGTTG+AGG + chr4_2:10136143-10136162 None:intergenic 40.0%
CTCAACCTGTTATGCAAGAA+TGG - chr4_2:10136141-10136160 Msa0588020:CDS 40.0%
GATTCCCATTCTTGCATAAC+AGG + chr4_2:10136149-10136168 None:intergenic 40.0%
ACTACGCAACTTCATCATTC+GGG + chr4_2:10136819-10136838 None:intergenic 40.0%
CACTACGCAACTTCATCATT+CGG + chr4_2:10136820-10136839 None:intergenic 40.0%
GAGCATGAGAATGAAGAAAC+TGG - chr4_2:10136918-10136937 Msa0588020:intron 40.0%
TAACATTATGCAAGCACCTC+AGG + chr4_2:10136999-10137018 None:intergenic 40.0%
TGGTGCATCATAACATCGTA+AGG + chr4_2:10137108-10137127 None:intergenic 40.0%
ACAGACAGTCCAAGATTCTA+AGG - chr4_2:10137212-10137231 Msa0588020:intron 40.0%
TGATTCCTTTGTTACCTGCA+TGG + chr4_2:10137292-10137311 None:intergenic 40.0%
!! GACGATGGATACTTTAAGAC+TGG - chr4_2:10137318-10137337 Msa0588020:intron 40.0%
GCAGTTACTACGGATAAAGA+TGG - chr4_2:10137345-10137364 Msa0588020:intron 40.0%
TTCGTAGAGTCTCTATGACA+TGG + chr4_2:10137522-10137541 None:intergenic 40.0%
GACTCTACGAAGTTTCACAT+TGG - chr4_2:10137531-10137550 Msa0588020:intron 40.0%
AAAAAGGAGAGGGTTGTGTT+AGG + chr4_2:10137567-10137586 None:intergenic 40.0%
!!! ACACAACCCTCTCCTTTTTT+TGG - chr4_2:10137568-10137587 Msa0588020:intron 40.0%
! TGTCTCAGAATGTTGCGTTT+TGG - chr4_2:10137939-10137958 Msa0588020:intron 40.0%
! GTCTCAGAATGTTGCGTTTT+GGG - chr4_2:10137940-10137959 Msa0588020:intron 40.0%
ATTTCTCCGTAGTCTTTGTC+TGG + chr4_2:10137970-10137989 None:intergenic 40.0%
AATTCTTCAAGGCTTAGAGG+AGG + chr4_2:10138042-10138061 None:intergenic 40.0%
GCCTTGAAGAATTATCCAAC+TGG - chr4_2:10138049-10138068 Msa0588020:intron 40.0%
CCCAGTTGGATAATTCTTCA+AGG + chr4_2:10138053-10138072 None:intergenic 40.0%
AAGTTTATTCTTGGCCCAGT+TGG + chr4_2:10138067-10138086 None:intergenic 40.0%
AACTTGCACCTTACAAGGTA+TGG - chr4_2:10138082-10138101 Msa0588020:intron 40.0%
AATGTAAGATGGAGCGTATC+AGG + chr4_2:10138216-10138235 None:intergenic 40.0%
! ACTTTCACACGTTGGTTGGT+TGG + chr4_2:10131522-10131541 None:intergenic 45.0%
ACTGCAATTTGCGGTGAAGT+AGG + chr4_2:10131632-10131651 None:intergenic 45.0%
!! TTATGAGGATGATGGAAGGG+AGG + chr4_2:10131726-10131745 None:intergenic 45.0%
TTGAGAGGAAGAGAAGATGG+GGG + chr4_2:10131781-10131800 None:intergenic 45.0%
! TTGGGGTGTCTCTACTTATG+AGG - chr4_2:10132066-10132085 Msa0588020:intron 45.0%
GTGTCTCTACTTATGAGGCA+TGG - chr4_2:10132071-10132090 Msa0588020:intron 45.0%
! CACTATGTTTGGAGTTCACG+TGG + chr4_2:10132669-10132688 None:intergenic 45.0%
! CTGCGGTGATTTTTCTCTAC+AGG - chr4_2:10132873-10132892 Msa0588020:intron 45.0%
GTTTCCACAAACAGTCTCAG+CGG + chr4_2:10133366-10133385 None:intergenic 45.0%
GAAATCCAGGGAAATCTTGG+TGG - chr4_2:10133653-10133672 Msa0588020:intron 45.0%
AATCTTGGTGGAGCTCGAAT+AGG - chr4_2:10133665-10133684 Msa0588020:intron 45.0%
AACAAATTCGGCAGACGGTT+TGG + chr4_2:10133699-10133718 None:intergenic 45.0%
!! GTACTTGCGACTTGGTTTAG+TGG - chr4_2:10133725-10133744 Msa0588020:intron 45.0%
ACATAGAGGAGCTCTACTTC+TGG + chr4_2:10133782-10133801 None:intergenic 45.0%
!!! GCCAACTTTTTTCTTCCCGT+AGG + chr4_2:10133990-10134009 None:intergenic 45.0%
TATTAGGAACGGGCGGAATA+TGG + chr4_2:10134196-10134215 None:intergenic 45.0%
GAGGAATTATTAGGAACGGG+CGG + chr4_2:10134203-10134222 None:intergenic 45.0%
TCCTCAGAGAAGAGCAGTAA+TGG - chr4_2:10134218-10134237 Msa0588020:intron 45.0%
TCCATTACTGCTCTTCTCTG+AGG + chr4_2:10134222-10134241 None:intergenic 45.0%
! ATTTGGCTCAGGTGAAGATC+CGG - chr4_2:10134402-10134421 Msa0588020:intron 45.0%
TTGTATACTAGCGGGACAAC+AGG - chr4_2:10134433-10134452 Msa0588020:intron 45.0%
GGGACAACAGGTAAACCTAA+GGG - chr4_2:10134445-10134464 Msa0588020:intron 45.0%
! CCCATGCTTTTGTCAAGGTT+TGG + chr4_2:10134701-10134720 None:intergenic 45.0%
! ATACCCCCATGCTTTTGTCA+AGG + chr4_2:10134706-10134725 None:intergenic 45.0%
! CATGTCCACGGGATTTTCAA+TGG - chr4_2:10134920-10134939 Msa0588020:intron 45.0%
TTGCCGAAGTTTAGTGTCAG+TGG - chr4_2:10135129-10135148 Msa0588020:CDS 45.0%
CGTGAGTCATATCCAACTGA+AGG - chr4_2:10135168-10135187 Msa0588020:intron 45.0%
! GGTGCTATAACCGTATTCAC+TGG - chr4_2:10135204-10135223 Msa0588020:intron 45.0%
GGTTCATTCTCACAAGACCT+TGG - chr4_2:10135273-10135292 Msa0588020:intron 45.0%
ACCATCATATGGCCGATATG+CGG + chr4_2:10135368-10135387 None:intergenic 45.0%
AGGTTCCAACTATGTACACC+CGG - chr4_2:10135530-10135549 Msa0588020:intron 45.0%
CAAGAATGGGAATCCATCAC+TGG - chr4_2:10136155-10136174 Msa0588020:intron 45.0%
CAATAAGCGATGTCCAGTGA+TGG + chr4_2:10136171-10136190 None:intergenic 45.0%
CATCACTGGACATCGCTTAT+TGG - chr4_2:10136169-10136188 Msa0588020:intron 45.0%
CATCGCTTATTGGAGCGATA+TGG - chr4_2:10136179-10136198 Msa0588020:intron 45.0%
! ACCAGGAAATGGTTTTCCGA+CGG + chr4_2:10136412-10136431 None:intergenic 45.0%
AAAACCATTTCCTGGTGTGC+AGG - chr4_2:10136416-10136435 Msa0588020:intron 45.0%
CTACGCAACTTCATCATTCG+GGG + chr4_2:10136818-10136837 None:intergenic 45.0%
! GGCTTTTCTGTATGCATGAC+AGG - chr4_2:10136875-10136894 Msa0588020:intron 45.0%
GAGAATGAAGAAACTGGAGC+TGG - chr4_2:10136924-10136943 Msa0588020:intron 45.0%
GACTGGAGATGCAGTTACTA+CGG - chr4_2:10137335-10137354 Msa0588020:intron 45.0%
CATCTCAAGGACAACATCGT+AGG + chr4_2:10137460-10137479 None:intergenic 45.0%
CTACGATGTTGTCCTTGAGA+TGG - chr4_2:10137458-10137477 Msa0588020:intron 45.0%
CTCTATGACATGGACCTTGT+TGG + chr4_2:10137512-10137531 None:intergenic 45.0%
GCGGATATAATCAAGAGTGG+TGG - chr4_2:10137757-10137776 Msa0588020:intron 45.0%
GACAGTTGGATGCTGCAAAA+AGG + chr4_2:10137923-10137942 None:intergenic 45.0%
!! ACGCAACATTCTGAGACAGT+TGG + chr4_2:10137937-10137956 None:intergenic 45.0%
GGCTTACCAGACAAAGACTA+CGG - chr4_2:10137961-10137980 Msa0588020:intron 45.0%
TTGTGCGATTATCGTGCCAA+AGG - chr4_2:10137993-10138012 Msa0588020:intron 45.0%
TTGCACCTTACAAGGTATGG+TGG - chr4_2:10138085-10138104 Msa0588020:intron 45.0%
! GCATATCAAGTGAGAGCATG+AGG - chr4_2:10138145-10138164 Msa0588020:intron 45.0%
! TATCAAGTGAGAGCATGAGG+AGG - chr4_2:10138148-10138167 Msa0588020:intron 45.0%
TGAGGAGGAGGAAGTTTCTA+TGG - chr4_2:10138163-10138182 Msa0588020:intron 45.0%
!! CGATTAGTCGAGTTGGTATC+TGG + chr4_2:10138302-10138321 None:intergenic 45.0%
TACCAACTCGACTAATCGTG+TGG - chr4_2:10138304-10138323 Msa0588020:intron 45.0%
ACCAACTCGACTAATCGTGT+GGG - chr4_2:10138305-10138324 Msa0588020:intron 45.0%
!!! TTTTGTTTAATTAAAAAAAA+TGG - chr4_2:10131949-10131968 Msa0588020:CDS 5.0%
! CACACGTTGGTTGGTTGGTT+TGG + chr4_2:10131517-10131536 None:intergenic 50.0%
GCAATTTGCGGTGAAGTAGG+TGG + chr4_2:10131629-10131648 None:intergenic 50.0%
AAGCAAGAAGCTGCAGCTCA+TGG - chr4_2:10133111-10133130 Msa0588020:intron 50.0%
AGTCTCAGCGGTGCTTATGT+TGG + chr4_2:10133354-10133373 None:intergenic 50.0%
CCAGCAACAAATTCGGCAGA+CGG + chr4_2:10133704-10133723 None:intergenic 50.0%
! TTGCTGGAGTACTTGCGACT+TGG - chr4_2:10133717-10133736 Msa0588020:intron 50.0%
!! CTTGCGACTTGGTTTAGTGG+AGG - chr4_2:10133728-10133747 Msa0588020:intron 50.0%
TCTGGATAGCTGAGTGCAAG+TGG + chr4_2:10133764-10133783 None:intergenic 50.0%
CGGGACAACAGGTAAACCTA+AGG - chr4_2:10134444-10134463 Msa0588020:intron 50.0%
!! ACACAGAAGCATCCTTGCTC+AGG - chr4_2:10134480-10134499 Msa0588020:intron 50.0%
ACCGCATATCGGCCATATGA+TGG - chr4_2:10135364-10135383 Msa0588020:intron 50.0%
CGCAAGGAACTTGCGTCTAA+TGG - chr4_2:10135609-10135628 Msa0588020:intron 50.0%
! AACAGGTTGAGGAAGTGCAG+AGG + chr4_2:10136132-10136151 None:intergenic 50.0%
GCTTTGCGCTCTCCATTCAA+TGG + chr4_2:10136384-10136403 None:intergenic 50.0%
! TTGAATGGAGAGCGCAAAGC+AGG - chr4_2:10136384-10136403 Msa0588020:intron 50.0%
ACCGTCGGAAAACCATTTCC+TGG - chr4_2:10136408-10136427 Msa0588020:intron 50.0%
CTAACCTGCACACCAGGAAA+TGG + chr4_2:10136423-10136442 None:intergenic 50.0%
CCATGCCACCATACCTTGTA+AGG + chr4_2:10138093-10138112 None:intergenic 50.0%
CCTTACAAGGTATGGTGGCA+TGG - chr4_2:10138090-10138109 Msa0588020:intron 50.0%
! TCCCACACGATTAGTCGAGT+TGG + chr4_2:10138309-10138328 None:intergenic 50.0%
GATGGAAGGGAGGCAGAAGA+GGG + chr4_2:10131716-10131735 None:intergenic 55.0%
TGATGGAAGGGAGGCAGAAG+AGG + chr4_2:10131717-10131736 None:intergenic 55.0%
AGCACCGCTGAGACTGTTTG+TGG - chr4_2:10133359-10133378 Msa0588020:CDS 55.0%
GAGCTCCACCAAGATTTCCC+TGG + chr4_2:10133661-10133680 None:intergenic 55.0%
!! CCGTCTGCCGAATTTGTTGC+TGG - chr4_2:10133701-10133720 Msa0588020:intron 55.0%
CTGCAAGCCACTTCAGCATC+TGG - chr4_2:10135586-10135605 Msa0588020:intron 55.0%
TTATCCAAGCAGGGCCACAG+TGG - chr4_2:10135989-10136008 Msa0588020:CDS 55.0%
GCTCAACTAACCTGCACACC+AGG + chr4_2:10136429-10136448 None:intergenic 55.0%
! CAAGTGAGAGCATGAGGAGG+AGG - chr4_2:10138151-10138170 Msa0588020:intron 55.0%
ACGCTCCCTCGCAATGCAAT+GGG - chr4_2:10138330-10138349 Msa0588020:intron 55.0%
CCTTCCCCATTGCATTGCGA+GGG + chr4_2:10138338-10138357 None:intergenic 55.0%
ACCTTCCCCATTGCATTGCG+AGG + chr4_2:10138339-10138358 None:intergenic 55.0%
TTACTGGCCCCTCTCTACGC+AGG - chr4_2:10134944-10134963 Msa0588020:intron 60.0%
CGTGGAACCTGCGTAGAGAG+GGG + chr4_2:10134954-10134973 None:intergenic 60.0%
CCGTGGAACCTGCGTAGAGA+GGG + chr4_2:10134955-10134974 None:intergenic 60.0%
CCCTCTCTACGCAGGTTCCA+CGG - chr4_2:10134952-10134971 Msa0588020:intron 60.0%
ACCGTGGAACCTGCGTAGAG+AGG + chr4_2:10134956-10134975 None:intergenic 60.0%
! GCTGAAGTGGCTTGCAGCTC+AGG + chr4_2:10135583-10135602 None:intergenic 60.0%
CCTTGCGCCAGATGCTGAAG+TGG + chr4_2:10135596-10135615 None:intergenic 60.0%
CCACTTCAGCATCTGGCGCA+AGG - chr4_2:10135593-10135612 Msa0588020:intron 60.0%
CATACCACTGTGGCCCTGCT+TGG + chr4_2:10135996-10136015 None:intergenic 60.0%
GACGCTCCCTCGCAATGCAA+TGG - chr4_2:10138329-10138348 Msa0588020:intron 60.0%
CGCTCCCTCGCAATGCAATG+GGG - chr4_2:10138331-10138350 Msa0588020:intron 60.0%
CCCTCGCAATGCAATGGGGA+AGG - chr4_2:10138335-10138354 Msa0588020:intron 60.0%
! GAGCGCAAAGCAGGCACCGT+CGG - chr4_2:10136393-10136412 Msa0588020:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10131453 10138828 10131453 ID=Msa0588020;Name=Msa0588020
chr4_2 mRNA 10131453 10138828 10131453 ID=Msa0588020-mRNA-1;Parent=Msa0588020;Name=Msa0588020-mRNA-1;_AED=0.11;_eAED=0.11;_QI=225|0.85|0.93|1|0.92|0.86|15|314|548
chr4_2 exon 10131453 10131811 10131453 ID=Msa0588020-mRNA-1:exon:2867;Parent=Msa0588020-mRNA-1
chr4_2 exon 10131925 10131978 10131925 ID=Msa0588020-mRNA-1:exon:2866;Parent=Msa0588020-mRNA-1
chr4_2 exon 10132183 10132350 10132183 ID=Msa0588020-mRNA-1:exon:2865;Parent=Msa0588020-mRNA-1
chr4_2 exon 10132471 10132532 10132471 ID=Msa0588020-mRNA-1:exon:2864;Parent=Msa0588020-mRNA-1
chr4_2 exon 10132894 10132984 10132894 ID=Msa0588020-mRNA-1:exon:2863;Parent=Msa0588020-mRNA-1
chr4_2 exon 10133280 10133384 10133280 ID=Msa0588020-mRNA-1:exon:2862;Parent=Msa0588020-mRNA-1
chr4_2 exon 10133844 10133921 10133844 ID=Msa0588020-mRNA-1:exon:2861;Parent=Msa0588020-mRNA-1
chr4_2 exon 10134070 10134162 10134070 ID=Msa0588020-mRNA-1:exon:2860;Parent=Msa0588020-mRNA-1
chr4_2 exon 10134651 10134749 10134651 ID=Msa0588020-mRNA-1:exon:2859;Parent=Msa0588020-mRNA-1
chr4_2 exon 10135054 10135161 10135054 ID=Msa0588020-mRNA-1:exon:2858;Parent=Msa0588020-mRNA-1
chr4_2 exon 10135780 10135868 10135780 ID=Msa0588020-mRNA-1:exon:2857;Parent=Msa0588020-mRNA-1
chr4_2 exon 10135979 10136168 10135979 ID=Msa0588020-mRNA-1:exon:2856;Parent=Msa0588020-mRNA-1
chr4_2 exon 10136467 10136619 10136467 ID=Msa0588020-mRNA-1:exon:2855;Parent=Msa0588020-mRNA-1
chr4_2 exon 10137048 10137214 10137048 ID=Msa0588020-mRNA-1:exon:2854;Parent=Msa0588020-mRNA-1
chr4_2 exon 10138459 10138828 10138459 ID=Msa0588020-mRNA-1:exon:2853;Parent=Msa0588020-mRNA-1
chr4_2 five_prime_UTR 10138604 10138828 10138604 ID=Msa0588020-mRNA-1:five_prime_utr;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10138459 10138603 10138459 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10137048 10137214 10137048 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10136467 10136619 10136467 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10135979 10136168 10135979 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10135780 10135868 10135780 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10135054 10135161 10135054 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10134651 10134749 10134651 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10134070 10134162 10134070 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10133844 10133921 10133844 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10133280 10133384 10133280 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10132894 10132984 10132894 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10132471 10132532 10132471 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10132183 10132350 10132183 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10131925 10131978 10131925 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 CDS 10131767 10131811 10131767 ID=Msa0588020-mRNA-1:cds;Parent=Msa0588020-mRNA-1
chr4_2 three_prime_UTR 10131453 10131766 10131453 ID=Msa0588020-mRNA-1:three_prime_utr;Parent=Msa0588020-mRNA-1
Gene Sequence

>Msa0588020

ATGAGTTCCTCATTTAAGACTCTCAACAAACAATTCCCTCTTCTGCCTCCCTTCCATCATCCTCATAAATTCTCTCAGAACCACCATTTTTCTTCTTACACCCCCATCTTCTCTTCCTCTCAATTTCGTTCATCATCTTGCTCAATATCTCAATCTACAACATATATGGAGGTCTTCAAAGCAATTGCTAAGCAAGAAGCTGCAGCTCATGGTAGTGTTGCTATCAGAGCTGATCAGCAGAGTTATAGTTACAAGCAACTCATCTCGTCGGCACAGAAGATATCTAATCTCTTGTGTGGAAATGATGTGAAGGGAAATCTTGGTGGAGCTCGAATAGGAATTGTAGCCAAACCGTCTGCCGAATTTGTTGCTGGAGTACTTGCGACTTGGTTTAGTGGAGGTGTTGCTGTTCCACTTGCACTCAGCTATCCAGAAGTAGAGCTCCTCTATGTGATGAATAATTCGGACGTGTCTGCAATACTGAGTACTGAAGATCATAGTGAACTAATGCAAAGCATTGCCAATAAAACCTCATCTCAATTTTTCCATATTCCGCCCGTTCCTAATAATTCCTCAGAGAAGAGCAGTAATGGACATTCACAAAATGGGGAAATTGATGCAGACAGTATTTTCCCGGAAAACATTGAAAGATCAAGTGAAGATCCGGCACTGATTTTGTATACTAGCGGGACAACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCCTTGCTCAGGTTGAATTTTTGCCGAAGTTTAGTGTCAGTGGAATTTGGAAGAGATGGCGTGAGTCATATCCAACTGAAGGATCTAAAGCTGATGGTGCTATAACCGTATTCACTGGAGTTCCAACTATGTACACCCGGTTAATACAAGGTTATCGTGCTATGGATCCTGAGCTGCAAGCCACTTCAGCATCTGGCGCAAGGAACTTGCGTCTAATGATGTGTGGATCCTCTGCACTTCCTCAACCTGTTATGCAAGAATGGGAATCCATCACTGGACATCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCATTGTCAAATCCATTGAATGGAGAGCGCAAAGCAGGCACCGTCGGAAAACCATTTCCTGGTGTGCAGGTCAAGATTCTTGCAGATGAAGAGCATGAGAATGAAGAAACTGGAGCTGGTGAGCTTTGCGTTAAAAGCCCTTCATCGTTTAAAGAATATTGGAAACTTCCTGAGGTAACAAAGGAATCATTTACAGACGATGGATACTTTAAGACTGGAGATGCAGTTACTACGGATAAAGATGGATATTTCATCATTTTAGGACGTACTAATGCGGATATAATCAAGAGTGGTGGCTATAAGCTTTCTGCATTAGAAATTGAATCACATCCAACTGTCTCAGAATGTTGCGTTTTGGGCTTACCAGACAAAGACTACGGAGAAATTGTTTGTGCGATTATCGTGCCAAAGGAGAAGCAAAATAAAGAGTCAAAACCTCCTCTAAGCCTTGAAGAATTATCCAACTGGGCCAAGAATAAACTTGCACCTTACAAGATACCAACTCGACTAATCGTGTGGGAGACGCTCCCTCGCAATGCAATGGGGAAGGTTAATAAAAAAGAGCTGAAGAAGCTGGTGCCTTCAGAACAGTAA
Protein sequence

>Msa0588020

MSSSFKTLNKQFPLLPPFHHPHKFSQNHHFSSYTPIFSSSQFRSSSCSISQSTTYMEVFKAIAKQEAAAHGSVAIRADQQSYSYKQLISSAQKISNLLCGNDVKGNLGGARIGIVAKPSAEFVAGVLATWFSGGVAVPLALSYPEVELLYVMNNSDVSAILSTEDHSELMQSIANKTSSQFFHIPPVPNNSSEKSSNGHSQNGEIDADSIFPENIERSSEDPALILYTSGTTGKPKGVVHTHRSILAQVEFLPKFSVSGIWKRWRESYPTEGSKADGAITVFTGVPTMYTRLIQGYRAMDPELQATSASGARNLRLMMCGSSALPQPVMQEWESITGHRLLERYGMTEFVMALSNPLNGERKAGTVGKPFPGVQVKILADEEHENEETGAGELCVKSPSSFKEYWKLPEVTKESFTDDGYFKTGDAVTTDKDGYFIILGRTNADIIKSGGYKLSALEIESHPTVSECCVLGLPDKDYGEIVCAIIVPKEKQNKESKPPLSLEELSNWAKNKLAPYKIPTRLIVWETLPRNAMGKVNKKELKKLVPSEQ*