Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480330 | XP_003600771.1 | 96.061 | 330 | 13 | 0 | 1 | 330 | 1 | 330 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480330 | sp|O05413|NMO_BACSU | 29.060 | 351 | 183 | 12 | 13 | 319 | 14 | 342 | 1.21e-30 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480330 | G7J9Z8 | 96.061 | 330 | 13 | 0 | 1 | 330 | 1 | 330 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031160 | Msa0480330 | 0.814229 | 1.713161e-51 | -8.615850e-47 |
| Msa0368670 | Msa0480330 | 0.870594 | 1.297349e-66 | -8.615850e-47 |
| Msa0415990 | Msa0480330 | 0.975921 | 7.571908e-141 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480330 | MtrunA17_Chr3g0112501 | 96.061 | 330 | 13 | 0 | 1 | 330 | 1 | 330 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480330 | AT5G64250.2 | 80.122 | 327 | 65 | 0 | 4 | 330 | 2 | 328 | 0.0 | 548 |
| Msa0480330 | AT5G64250.1 | 78.397 | 287 | 62 | 0 | 44 | 330 | 2 | 288 | 1.68e-169 | 473 |
Find 133 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAGTACACGGATGTATT+TGG | 0.206653 | 3_3:+85564354 | Msa0480330:CDS |
| CAAGTAGAATGTCAAATTTC+AGG | 0.216135 | 3_3:+85564783 | Msa0480330:exon |
| CGCAGTATTGCAAACTTATT+GGG | 0.219941 | 3_3:+85561926 | Msa0480330:CDS |
| TCGCAGTATTGCAAACTTAT+TGG | 0.225729 | 3_3:+85561925 | Msa0480330:CDS |
| GTTGCCAATGCTGGCGCTCT+TGG | 0.242369 | 3_3:+85561516 | Msa0480330:CDS |
| CATGGGTTGGAGAGGAATAT+TGG | 0.242800 | 3_3:+85561425 | Msa0480330:exon |
| GCCTTCTCAGGGCCCCTGAC+TGG | 0.243526 | 3_3:+85561538 | Msa0480330:CDS |
| TGGAGAATGTCGACTTTCTT+TGG | 0.248644 | 3_3:+85565011 | Msa0480330:three_prime_UTR |
| CTGGCGCTCTTGGCCTTCTC+AGG | 0.255246 | 3_3:+85561526 | Msa0480330:CDS |
| GTTGCTGCTGTTGCCAATGC+TGG | 0.278425 | 3_3:+85561507 | Msa0480330:CDS |
| GTTGCCAAGGCTCATGCAGC+TGG | 0.294070 | 3_3:+85561969 | Msa0480330:CDS |
| TGTCAACAGTAATAATAGTT+TGG | 0.312289 | 3_3:+85565056 | Msa0480330:three_prime_UTR |
| GCAGGATAGTTTAATTTCAT+TGG | 0.321318 | 3_3:+85563565 | Msa0480330:intron |
| TCTCCTGTAGTTGTCATGTT+TGG | 0.321848 | 3_3:-85564640 | None:intergenic |
| CTCCTGTAGTTGTCATGTTT+GGG | 0.329921 | 3_3:-85564639 | None:intergenic |
| CCCAAAGGGTTTATCAGTTA+AGG | 0.349440 | 3_3:-85561841 | None:intergenic |
| CCGAGGGTGGTCAATCTTGT+TGG | 0.353585 | 3_3:+85563590 | Msa0480330:CDS |
| TGAAGCAAAGGTACCCAGTC+AGG | 0.362588 | 3_3:-85561552 | None:intergenic |
| CGAGGGTGGTCAATCTTGTT+GGG | 0.365938 | 3_3:+85563591 | Msa0480330:CDS |
| GAAGCAGGTGGTCATGTTAT+TGG | 0.369464 | 3_3:+85562768 | Msa0480330:CDS |
| CTGAGTACACGGATGTATTT+GGG | 0.389520 | 3_3:+85564355 | Msa0480330:CDS |
| ATGGGTTGGAGAGGAATATT+GGG | 0.394644 | 3_3:+85561426 | Msa0480330:CDS |
| CCTTCTCAGGGCCCCTGACT+GGG | 0.404668 | 3_3:+85561539 | Msa0480330:CDS |
| ACCTTAACTGATAAACCCTT+TGG | 0.409677 | 3_3:+85561840 | Msa0480330:CDS |
| GGCAACAGCAGCAACAAGTT+GGG | 0.413755 | 3_3:-85561499 | None:intergenic |
| TCCTCATGAGGAGAACTTGA+AGG | 0.419894 | 3_3:+85561884 | Msa0480330:CDS |
| ATTCCTCCAGCTGCAATAAC+AGG | 0.421071 | 3_3:-85563626 | None:intergenic |
| GTCAACAGTAATAATAGTTT+GGG | 0.421537 | 3_3:+85565057 | Msa0480330:three_prime_UTR |
| CCTTAACTGATAAACCCTTT+GGG | 0.435859 | 3_3:+85561841 | Msa0480330:CDS |
| TTGCCAAGGCTCATGCAGCT+GGG | 0.439308 | 3_3:+85561970 | Msa0480330:CDS |
| ATGAGCCTTGGCAACCAATT+CGG | 0.440632 | 3_3:-85561961 | None:intergenic |
| AGGGTAGCAAATGGGGTGGC+AGG | 0.446810 | 3_3:+85565129 | Msa0480330:three_prime_UTR |
| TTGGCTTCACTTTCATGAGC+TGG | 0.447083 | 3_3:-85564447 | None:intergenic |
| ACTGATAAACCCTTTGGGAT+TGG | 0.450635 | 3_3:+85561846 | Msa0480330:CDS |
| AGGACACGATGTGGTGCATC+GGG | 0.451394 | 3_3:-85564390 | None:intergenic |
| ATTGGCCATTCAACGATTCA+TGG | 0.456668 | 3_3:+85564480 | Msa0480330:CDS |
| ATTACTTGAGGGAGCTCATA+AGG | 0.460879 | 3_3:+85561808 | Msa0480330:CDS |
| GTGGGTAGCTGACCTCAGTA+TGG | 0.461928 | 3_3:+85564991 | Msa0480330:three_prime_UTR |
| AACCCCAGCTGCATGAGCCT+TGG | 0.464043 | 3_3:-85561973 | None:intergenic |
| CAGGACACGATGTGGTGCAT+CGG | 0.467517 | 3_3:-85564391 | None:intergenic |
| ATGGTTTGCACCACTGTGTT+CGG | 0.472913 | 3_3:+85564928 | Msa0480330:three_prime_UTR |
| CCACGCCATGAATCGTTGAA+TGG | 0.474277 | 3_3:-85564485 | None:intergenic |
| AGTTGGGGACCAGAGATATC+AGG | 0.475572 | 3_3:-85561483 | None:intergenic |
| CTTTCAAGAAAATCGGATGT+AGG | 0.477751 | 3_3:-85561353 | None:intergenic |
| AGGTGGTCATGTTATTGGTC+AGG | 0.479075 | 3_3:+85562773 | Msa0480330:CDS |
| CCTTGATGAGACCAACACTT+TGG | 0.481217 | 3_3:-85564690 | None:intergenic |
| TGGGGTTAAAATTGTTCCAC+AGG | 0.481779 | 3_3:+85561989 | Msa0480330:CDS |
| GAAGCCAACCAACCTGTCAT+TGG | 0.481968 | 3_3:+85564462 | Msa0480330:CDS |
| ACTTAGTACTAGAGTTTAGC+CGG | 0.482963 | 3_3:+85565106 | Msa0480330:three_prime_UTR |
| AAGGCCAAGAGCGCCAGCAT+TGG | 0.484775 | 3_3:-85561520 | None:intergenic |
| TTCACTTTCATGAGCTGGAA+GGG | 0.485664 | 3_3:-85564442 | None:intergenic |
| CCACTAGGTCCTGATATCTC+TGG | 0.493195 | 3_3:+85561474 | Msa0480330:CDS |
| GGTGCTCAAGGCGTCTGTCT+AGG | 0.494515 | 3_3:+85563686 | Msa0480330:CDS |
| GATATACCTGTTATTGCAGC+TGG | 0.499725 | 3_3:+85563620 | Msa0480330:CDS |
| TGGCGCTCTTGGCCTTCTCA+GGG | 0.500653 | 3_3:+85561527 | Msa0480330:CDS |
| TTTAATTTCATTGGTGCCGA+GGG | 0.501035 | 3_3:+85563574 | Msa0480330:CDS |
| CCCAGTCAGGGGCCCTGAGA+AGG | 0.503977 | 3_3:-85561539 | None:intergenic |
| CTTCACTTTCATGAGCTGGA+AGG | 0.504016 | 3_3:-85564443 | None:intergenic |
| GGGTGATTGTACAACCGAAT+TGG | 0.505041 | 3_3:+85561947 | Msa0480330:CDS |
| TGGCAACAGCAGCAACAAGT+TGG | 0.505599 | 3_3:-85561500 | None:intergenic |
| TGTCATGTTTGGGACTGTAC+CGG | 0.509661 | 3_3:-85564629 | None:intergenic |
| TTAGCCGGAGGGTAGCAAAT+GGG | 0.512737 | 3_3:+85565121 | Msa0480330:three_prime_UTR |
| ATGAGCTCCCTCAAGTAATC+CGG | 0.513123 | 3_3:-85561804 | None:intergenic |
| GCTCTAGCACTTGGTGCTCA+AGG | 0.515378 | 3_3:+85563674 | Msa0480330:CDS |
| TGCCAAGGCTCATGCAGCTG+GGG | 0.515416 | 3_3:+85561971 | Msa0480330:CDS |
| GACTTTGTTACGCGCTGCAG+TGG | 0.516644 | 3_3:+85564972 | Msa0480330:three_prime_UTR |
| GTAGCAAATGGGGTGGCAGG+TGG | 0.516762 | 3_3:+85565132 | Msa0480330:three_prime_UTR |
| ATTCTGCAAGGTCGTGAAGC+AGG | 0.519603 | 3_3:+85562753 | Msa0480330:CDS |
| AGAGAGGCTTCAACATGGGT+TGG | 0.521515 | 3_3:+85561412 | Msa0480330:exon |
| GCAATTGATGCAGGTGCCGA+TGG | 0.521675 | 3_3:+85562726 | Msa0480330:CDS |
| TTTAGCCGGAGGGTAGCAAA+TGG | 0.523297 | 3_3:+85565120 | Msa0480330:three_prime_UTR |
| AAAATCGGATGTAGGAAGAA+TGG | 0.529226 | 3_3:-85561345 | None:intergenic |
| TATGTTGCTGCTCTAGCACT+TGG | 0.531534 | 3_3:+85563665 | Msa0480330:CDS |
| CTTTGAAGAAAGGTGTCTGC+AGG | 0.531599 | 3_3:-85564410 | None:intergenic |
| GCAGCTGGAGGAATTGTAGA+TGG | 0.532469 | 3_3:+85563635 | Msa0480330:CDS |
| TATGAATATGTAGGAATCAC+CGG | 0.533749 | 3_3:+85561785 | Msa0480330:intron |
| TTGGGACTGTACCGGCAAAA+CGG | 0.539874 | 3_3:-85564621 | None:intergenic |
| GTCCCAAACATGACAACTAC+AGG | 0.543404 | 3_3:+85564637 | Msa0480330:CDS |
| GATCTCCAGTCTTTGAAGAA+AGG | 0.549706 | 3_3:-85564420 | None:intergenic |
| GTGATTAAGAGACTAGTTGA+AGG | 0.549736 | 3_3:+85564733 | Msa0480330:CDS |
| CCAACAAGATTGACCACCCT+CGG | 0.550917 | 3_3:-85563590 | None:intergenic |
| AGACACCTTTCTTCAAAGAC+TGG | 0.552411 | 3_3:+85564415 | Msa0480330:CDS |
| TACAACCGAATTGGTTGCCA+AGG | 0.556327 | 3_3:+85561956 | Msa0480330:CDS |
| GGCTTCAACATGGGTTGGAG+AGG | 0.557549 | 3_3:+85561417 | Msa0480330:exon |
| AGAGAGAGAGGCTTCAACAT+GGG | 0.558920 | 3_3:+85561408 | Msa0480330:exon |
| GGAATCACCGGATTACTTGA+GGG | 0.562118 | 3_3:+85561797 | Msa0480330:intron |
| AATTTCATTGGTGCCGAGGG+TGG | 0.565171 | 3_3:+85563577 | Msa0480330:CDS |
| AGAACTAAACCAATCCCAAA+GGG | 0.572201 | 3_3:-85561855 | None:intergenic |
| GAGAGAGAGAGGCTTCAACA+TGG | 0.575671 | 3_3:+85561407 | Msa0480330:exon |
| ATCGTTGAATGGCCAATGAC+AGG | 0.575943 | 3_3:-85564474 | None:intergenic |
| TTGCAGGTTTCTTGCAACTG+AGG | 0.576902 | 3_3:+85564281 | Msa0480330:intron |
| CCAAAGTGTTGGTCTCATCA+AGG | 0.577958 | 3_3:+85564690 | Msa0480330:CDS |
| ATGGCCAATGACAGGTTGGT+TGG | 0.579001 | 3_3:-85564466 | None:intergenic |
| GAGAGCATGTGTATGTATGC+TGG | 0.579458 | 3_3:+85564667 | Msa0480330:CDS |
| CCACCCCATTTGCTACCCTC+CGG | 0.582154 | 3_3:-85565125 | None:intergenic |
| TAGCCGGAGGGTAGCAAATG+GGG | 0.583146 | 3_3:+85565122 | Msa0480330:three_prime_UTR |
| CGGATGTATTTGGGAGAGCA+AGG | 0.583192 | 3_3:+85564364 | Msa0480330:CDS |
| CCATTCAACGATTCATGGCG+TGG | 0.585787 | 3_3:+85564485 | Msa0480330:CDS |
| AGGAATCACCGGATTACTTG+AGG | 0.586705 | 3_3:+85561796 | Msa0480330:intron |
| ACCTTCAAGTTCTCCTCATG+AGG | 0.587452 | 3_3:-85561885 | None:intergenic |
| GGAGGAATTGTAGATGGTCG+AGG | 0.589092 | 3_3:+85563641 | Msa0480330:CDS |
| GTTTAATTTCATTGGTGCCG+AGG | 0.590869 | 3_3:+85563573 | Msa0480330:CDS |
| GAAGCAAAGGTACCCAGTCA+GGG | 0.592954 | 3_3:-85561551 | None:intergenic |
| AAGGCGTCTGTCTAGGCACT+AGG | 0.601536 | 3_3:+85563693 | Msa0480330:CDS |
| GCAACAGCAGCAACAAGTTG+GGG | 0.606218 | 3_3:-85561498 | None:intergenic |
| ATGTATGCTGGCCAAAGTGT+TGG | 0.607730 | 3_3:+85564679 | Msa0480330:CDS |
| TGATTAAGAGACTAGTTGAA+GGG | 0.611391 | 3_3:+85564734 | Msa0480330:CDS |
| TAGAACTAAACCAATCCCAA+AGG | 0.616278 | 3_3:-85561856 | None:intergenic |
| GGCATAGTTCAGGCACCACT+AGG | 0.617445 | 3_3:+85561459 | Msa0480330:CDS |
| AGTACTAGAGTTTAGCCGGA+GGG | 0.620626 | 3_3:+85565110 | Msa0480330:three_prime_UTR |
| GAGGGTGGTCAATCTTGTTG+GGG | 0.620757 | 3_3:+85563592 | Msa0480330:CDS |
| GGGAGCTCATAAGGAAAACA+AGG | 0.623691 | 3_3:+85561817 | Msa0480330:CDS |
| GCCGATGGAATCATTCTGCA+AGG | 0.624929 | 3_3:+85562741 | Msa0480330:CDS |
| ATGTGCTTGCTAGAACAACA+TGG | 0.636884 | 3_3:+85564909 | Msa0480330:three_prime_UTR |
| GATTAAGAGACTAGTTGAAG+GGG | 0.639273 | 3_3:+85564735 | Msa0480330:CDS |
| ACTTTGTTACGCGCTGCAGT+GGG | 0.648409 | 3_3:+85564973 | Msa0480330:three_prime_UTR |
| CTGCAATAACAGGTATATCA+CGG | 0.651296 | 3_3:-85563616 | None:intergenic |
| TTGAATGGCCAATGACAGGT+TGG | 0.651828 | 3_3:-85564470 | None:intergenic |
| ACCTTGCAGAATGATTCCAT+CGG | 0.655332 | 3_3:-85562742 | None:intergenic |
| ATACCTGTTATTGCAGCTGG+AGG | 0.657038 | 3_3:+85563623 | Msa0480330:CDS |
| GCAGTATTGCAAACTTATTG+GGG | 0.657214 | 3_3:+85561927 | Msa0480330:CDS |
| AAGCAAAGGTACCCAGTCAG+GGG | 0.664519 | 3_3:-85561550 | None:intergenic |
| CTGCAAGGTCGTGAAGCAGG+TGG | 0.668201 | 3_3:+85562756 | Msa0480330:CDS |
| ACTCGATGAAACTGAGTACA+CGG | 0.668283 | 3_3:+85564344 | Msa0480330:CDS |
| CCGGAGGGTAGCAAATGGGG+TGG | 0.692599 | 3_3:+85565125 | Msa0480330:three_prime_UTR |
| GTGTTCGGTAGATATTGACA+AGG | 0.692935 | 3_3:+85564943 | Msa0480330:three_prime_UTR |
| GGTGTCTGCAGGACACGATG+TGG | 0.696357 | 3_3:-85564399 | None:intergenic |
| ATGTATTTGGGAGAGCAAGG+TGG | 0.699779 | 3_3:+85564367 | Msa0480330:CDS |
| TAGTACTAGAGTTTAGCCGG+AGG | 0.706326 | 3_3:+85565109 | Msa0480330:three_prime_UTR |
| CCAGAGATATCAGGACCTAG+TGG | 0.707710 | 3_3:-85561474 | None:intergenic |
| CGGATGTAGGAAGAATGGTG+AGG | 0.712883 | 3_3:-85561340 | None:intergenic |
| AGTCGACATTCTCCATACTG+AGG | 0.720714 | 3_3:-85565003 | None:intergenic |
| TCAATATCTACCGAACACAG+TGG | 0.743079 | 3_3:-85564938 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGATAATAAATTAATAAG+GGG | - | chr3_3:85561583-85561602 | None:intergenic | 10.0% |
| !! | GTTAGATAATAAATTAATAA+GGG | - | chr3_3:85561584-85561603 | None:intergenic | 10.0% |
| !! | TGTTAGATAATAAATTAATA+AGG | - | chr3_3:85561585-85561604 | None:intergenic | 10.0% |
| !! | TGTAAAATAAAAATTAAAAC+AGG | - | chr3_3:85562480-85562499 | None:intergenic | 10.0% |
| !! | AAGTATATAATCAAATAAAA+AGG | - | chr3_3:85564573-85564592 | None:intergenic | 10.0% |
| !! | TAGATAATAAATTAATAAGG+GGG | - | chr3_3:85561582-85561601 | None:intergenic | 15.0% |
| !! | TTTATAATTTATTCCAAAAC+AGG | - | chr3_3:85562505-85562524 | None:intergenic | 15.0% |
| !!! | TATATTTGTGTTTCTATTAT+AGG | + | chr3_3:85562677-85562696 | Msa0480330:intron | 15.0% |
| !!! | AAATTTTTCTTTTTGATTCA+CGG | - | chr3_3:85563251-85563270 | None:intergenic | 15.0% |
| !!! | ATATTTTGCATATTTAATCT+GGG | + | chr3_3:85563902-85563921 | Msa0480330:intron | 15.0% |
| !!! | ATATTTTAAAATGAACAGAA+CGG | - | chr3_3:85564847-85564866 | None:intergenic | 15.0% |
| !! | GGAAAACTAAAATTAGAAAT+GGG | - | chr3_3:85562030-85562049 | None:intergenic | 20.0% |
| !! | AGGAAAACTAAAATTAGAAA+TGG | - | chr3_3:85562031-85562050 | None:intergenic | 20.0% |
| !! | TCAATTGTATATGAATCAAA+AGG | - | chr3_3:85562051-85562070 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+TGG | - | chr3_3:85562117-85562136 | None:intergenic | 20.0% |
| !!! | TTTATTTTACATACCTGTTT+TGG | + | chr3_3:85562489-85562508 | Msa0480330:intron | 20.0% |
| !!! | AAGTTATTTTCATTCTGTTT+GGG | + | chr3_3:85562639-85562658 | Msa0480330:intron | 20.0% |
| !!! | TGTTATTCATTACTTTTGAT+TGG | + | chr3_3:85562948-85562967 | Msa0480330:intron | 20.0% |
| !!! | TTTTTACTATTCTTGAGAAA+AGG | + | chr3_3:85562971-85562990 | Msa0480330:intron | 20.0% |
| !!! | TTTTACTATTCTTGAGAAAA+GGG | + | chr3_3:85562972-85562991 | Msa0480330:intron | 20.0% |
| !! | TGTTTCATATTATAACACTT+AGG | + | chr3_3:85563041-85563060 | Msa0480330:intron | 20.0% |
| !! | AATTTATACCTAGAAACTTT+GGG | + | chr3_3:85563172-85563191 | Msa0480330:intron | 20.0% |
| !!! | ATTGTTTTTTAACTATGGAT+GGG | - | chr3_3:85563333-85563352 | None:intergenic | 20.0% |
| !!! | AACAGATTGTTTTTTAACTA+TGG | - | chr3_3:85563338-85563357 | None:intergenic | 20.0% |
| !! | ACTTATACATGTGATATTTA+AGG | + | chr3_3:85563735-85563754 | Msa0480330:intron | 20.0% |
| !! | ATAAGGAATACAATTGTTTA+AGG | - | chr3_3:85563863-85563882 | None:intergenic | 20.0% |
| !! | ATTCAATATTTGATCTGATA+AGG | - | chr3_3:85563880-85563899 | None:intergenic | 20.0% |
| !!! | CATATTTTGCATATTTAATC+TGG | + | chr3_3:85563901-85563920 | Msa0480330:intron | 20.0% |
| !!! | TATTTTGCATATTTAATCTG+GGG | + | chr3_3:85563903-85563922 | Msa0480330:intron | 20.0% |
| !!! | TGTCTATTTTCTAAAGAATT+TGG | + | chr3_3:85564025-85564044 | Msa0480330:intron | 20.0% |
| !!! | ACTAACTTTCTTTTGTATAT+AGG | - | chr3_3:85564321-85564340 | None:intergenic | 20.0% |
| !! | GATACACATACATAAATATT+AGG | - | chr3_3:85564870-85564889 | None:intergenic | 20.0% |
| !! | CTGTTTTCTTTCAAGAAAAT+CGG | - | chr3_3:85561363-85561382 | None:intergenic | 25.0% |
| ! | TGCATATGATAGTACTAAAA+GGG | - | chr3_3:85561748-85561767 | None:intergenic | 25.0% |
| ! | ATGCATATGATAGTACTAAA+AGG | - | chr3_3:85561749-85561768 | None:intergenic | 25.0% |
| ! | AATTGTGTGTATGAATATGT+AGG | + | chr3_3:85561776-85561795 | Msa0480330:intron | 25.0% |
| ! | AACTAAAATTAGAAATGGGA+TGG | - | chr3_3:85562026-85562045 | None:intergenic | 25.0% |
| ! | TCTGATGCATAACTAAAATT+AGG | + | chr3_3:85562091-85562110 | Msa0480330:intron | 25.0% |
| !! | ACTATTTTCATAAACTGTCA+TGG | + | chr3_3:85562244-85562263 | Msa0480330:intron | 25.0% |
| ! | ATAAACATTAAACACTTGTG+GGG | - | chr3_3:85562341-85562360 | None:intergenic | 25.0% |
| ! | CATAAACATTAAACACTTGT+GGG | - | chr3_3:85562342-85562361 | None:intergenic | 25.0% |
| ! | ACATAAACATTAAACACTTG+TGG | - | chr3_3:85562343-85562362 | None:intergenic | 25.0% |
| ! | TGTTTAATGTTTATGTCAGT+AGG | + | chr3_3:85562347-85562366 | Msa0480330:intron | 25.0% |
| !!! | GAAGTTATTTTCATTCTGTT+TGG | + | chr3_3:85562638-85562657 | Msa0480330:intron | 25.0% |
| ! | GAAACACAAATATAAGTAAC+AGG | - | chr3_3:85562671-85562690 | None:intergenic | 25.0% |
| !! | TTTGTGTTTCTATTATAGGT+CGG | + | chr3_3:85562681-85562700 | Msa0480330:intron | 25.0% |
| ! | TTTACTATTCTTGAGAAAAG+GGG | + | chr3_3:85562973-85562992 | Msa0480330:intron | 25.0% |
| ! | TTATAACACTTAGGTTTGAT+AGG | + | chr3_3:85563050-85563069 | Msa0480330:intron | 25.0% |
| ! | ATAAATTGAACTTGGGAATA+AGG | - | chr3_3:85563159-85563178 | None:intergenic | 25.0% |
| ! | TCTAGGTATAAATTGAACTT+GGG | - | chr3_3:85563166-85563185 | None:intergenic | 25.0% |
| ! | TTCTAGGTATAAATTGAACT+TGG | - | chr3_3:85563167-85563186 | None:intergenic | 25.0% |
| ! | CAATTTATACCTAGAAACTT+TGG | + | chr3_3:85563171-85563190 | Msa0480330:intron | 25.0% |
| ! | ATTTATACCTAGAAACTTTG+GGG | + | chr3_3:85563173-85563192 | Msa0480330:intron | 25.0% |
| !!! | GATTGTTTTTTAACTATGGA+TGG | - | chr3_3:85563334-85563353 | None:intergenic | 25.0% |
| ! | AAAAACAATCTGTTGAAATG+AGG | + | chr3_3:85563344-85563363 | Msa0480330:intron | 25.0% |
| !! | TAAAAGATTGATTCCTTCAA+AGG | - | chr3_3:85563423-85563442 | None:intergenic | 25.0% |
| !! | AGGAATCAATCTTTTATTGT+CGG | + | chr3_3:85563427-85563446 | Msa0480330:intron | 25.0% |
| ! | ATATCTATGATCAACAGTAA+TGG | - | chr3_3:85563522-85563541 | None:intergenic | 25.0% |
| ! | ATATTGCTCAATATTCTTTG+AGG | + | chr3_3:85563758-85563777 | Msa0480330:intron | 25.0% |
| !! | ATATTTAATCTGGGGTTAAT+AGG | + | chr3_3:85563911-85563930 | Msa0480330:intron | 25.0% |
| !! | AAGAGAGTTTTCATTTGTAT+GGG | - | chr3_3:85564069-85564088 | None:intergenic | 25.0% |
| ! | TCATGATCAATAAACTAAGA+CGG | - | chr3_3:85564132-85564151 | None:intergenic | 25.0% |
| !! | AAGACAATCTTAATTTGAAC+AGG | + | chr3_3:85564219-85564238 | Msa0480330:intron | 25.0% |
| ! | AACACTAATATTCATGCAAA+TGG | + | chr3_3:85564252-85564271 | Msa0480330:intron | 25.0% |
| ! | GCTTTCATTTATTTCATTAG+TGG | + | chr3_3:85564518-85564537 | Msa0480330:intron | 25.0% |
| ! | TGTCAACAGTAATAATAGTT+TGG | + | chr3_3:85565056-85565075 | Msa0480330:three_prime_UTR | 25.0% |
| ! | GTCAACAGTAATAATAGTTT+GGG | + | chr3_3:85565057-85565076 | Msa0480330:three_prime_UTR | 25.0% |
| !!! | GGAATATTGGGTTTTGAATA+TGG | + | chr3_3:85561438-85561457 | Msa0480330:CDS | 30.0% |
| ! | TTTTGAATATGGCATAGTTC+AGG | + | chr3_3:85561449-85561468 | Msa0480330:CDS | 30.0% |
| TATGAATATGTAGGAATCAC+CGG | + | chr3_3:85561785-85561804 | Msa0480330:intron | 30.0% | |
| AGTAAAACAGTCTAGACTAA+GGG | - | chr3_3:85562401-85562420 | None:intergenic | 30.0% | |
| AAGTAAAACAGTCTAGACTA+AGG | - | chr3_3:85562402-85562421 | None:intergenic | 30.0% | |
| ATTGTAGTCAAGAAAGCAAT+TGG | + | chr3_3:85562532-85562551 | Msa0480330:intron | 30.0% | |
| ! | AAGTTTCGAAAGTGCAAAAA+AGG | + | chr3_3:85562704-85562723 | Msa0480330:CDS | 30.0% |
| ATAAGCTATCTTTATCTCAG+TGG | + | chr3_3:85562853-85562872 | Msa0480330:intron | 30.0% | |
| ! | AGGCTTCTCACTAATTTTAT+TGG | - | chr3_3:85563215-85563234 | None:intergenic | 30.0% |
| TCTTAAGTAGCTGATGTAAA+TGG | + | chr3_3:85563465-85563484 | Msa0480330:intron | 30.0% | |
| ! | TATGATCAACAGTAATGGAA+AGG | - | chr3_3:85563517-85563536 | None:intergenic | 30.0% |
| TATCCTGCAATAAAATACAG+GGG | - | chr3_3:85563553-85563572 | None:intergenic | 30.0% | |
| CTATCCTGCAATAAAATACA+GGG | - | chr3_3:85563554-85563573 | None:intergenic | 30.0% | |
| ACTATCCTGCAATAAAATAC+AGG | - | chr3_3:85563555-85563574 | None:intergenic | 30.0% | |
| ! | GCAGGATAGTTTAATTTCAT+TGG | + | chr3_3:85563565-85563584 | Msa0480330:intron | 30.0% |
| ! | CAAGAGAGTTTTCATTTGTA+TGG | - | chr3_3:85564070-85564089 | None:intergenic | 30.0% |
| AAACACAATCACTAATCTTC+AGG | - | chr3_3:85564101-85564120 | None:intergenic | 30.0% | |
| ATGTGAACTTGTGAAAACTT+TGG | - | chr3_3:85564159-85564178 | None:intergenic | 30.0% | |
| !! | TTAAGATTGTCTTGACTTGT+TGG | - | chr3_3:85564212-85564231 | None:intergenic | 30.0% |
| ! | TGATTAAGAGACTAGTTGAA+GGG | + | chr3_3:85564734-85564753 | Msa0480330:CDS | 30.0% |
| CAAGTAGAATGTCAAATTTC+AGG | + | chr3_3:85564783-85564802 | Msa0480330:exon | 30.0% | |
| TGAATCAAGAACAAATGGAA+TGG | + | chr3_3:85564806-85564825 | Msa0480330:intron | 30.0% | |
| AAAATCGGATGTAGGAAGAA+TGG | - | chr3_3:85561348-85561367 | None:intergenic | 35.0% | |
| CTTTCAAGAAAATCGGATGT+AGG | - | chr3_3:85561356-85561375 | None:intergenic | 35.0% | |
| GATAGTACTAAAAGGGAAAG+TGG | - | chr3_3:85561741-85561760 | None:intergenic | 35.0% | |
| ACCTTAACTGATAAACCCTT+TGG | + | chr3_3:85561840-85561859 | Msa0480330:CDS | 35.0% | |
| CCTTAACTGATAAACCCTTT+GGG | + | chr3_3:85561841-85561860 | Msa0480330:CDS | 35.0% | |
| AGAACTAAACCAATCCCAAA+GGG | - | chr3_3:85561858-85561877 | None:intergenic | 35.0% | |
| TAGAACTAAACCAATCCCAA+AGG | - | chr3_3:85561859-85561878 | None:intergenic | 35.0% | |
| TCGCAGTATTGCAAACTTAT+TGG | + | chr3_3:85561925-85561944 | Msa0480330:CDS | 35.0% | |
| CGCAGTATTGCAAACTTATT+GGG | + | chr3_3:85561926-85561945 | Msa0480330:CDS | 35.0% | |
| GCAGTATTGCAAACTTATTG+GGG | + | chr3_3:85561927-85561946 | Msa0480330:CDS | 35.0% | |
| !!! | GGGTTTTTTAAGAGAGCTTA+TGG | - | chr3_3:85562321-85562340 | None:intergenic | 35.0% |
| ! | GAATGTTTGCTGCTAAATGT+AGG | + | chr3_3:85562598-85562617 | Msa0480330:intron | 35.0% |
| TTACAGGCTTGTCAAGATAT+AGG | - | chr3_3:85563102-85563121 | None:intergenic | 35.0% | |
| !! | GGTTTTCAGGGAAATTTTAC+AGG | - | chr3_3:85563118-85563137 | None:intergenic | 35.0% |
| AAATTTCCCTGAAAACCTCA+TGG | + | chr3_3:85563121-85563140 | Msa0480330:intron | 35.0% | |
| AAAATCACCCCAAAGTTTCT+AGG | - | chr3_3:85563183-85563202 | None:intergenic | 35.0% | |
| ! | TAGTGAGAAGCCTTAATTTG+AGG | + | chr3_3:85563222-85563241 | Msa0480330:intron | 35.0% |
| TATGGATGGGAGTGAAAAAT+AGG | - | chr3_3:85563320-85563339 | None:intergenic | 35.0% | |
| TGTTCAATCTTGTCACTGAA+AGG | + | chr3_3:85563369-85563388 | Msa0480330:intron | 35.0% | |
| GCAATGTTCATATCCTTTGA+AGG | + | chr3_3:85563407-85563426 | Msa0480330:intron | 35.0% | |
| ! | AACAGTAATGGAAAGGACTA+GGG | - | chr3_3:85563510-85563529 | None:intergenic | 35.0% |
| ATCCTGCAATAAAATACAGG+GGG | - | chr3_3:85563552-85563571 | None:intergenic | 35.0% | |
| !! | TTTAATTTCATTGGTGCCGA+GGG | + | chr3_3:85563574-85563593 | Msa0480330:CDS | 35.0% |
| CTGCAATAACAGGTATATCA+CGG | - | chr3_3:85563619-85563638 | None:intergenic | 35.0% | |
| ! | TAAGGTATTAGCCTACATGT+AGG | - | chr3_3:85563845-85563864 | None:intergenic | 35.0% |
| AATAGGATGACTGAGGAAAA+TGG | + | chr3_3:85563928-85563947 | Msa0480330:intron | 35.0% | |
| !! | ATTAGTGGAAGCATCTTTGT+AGG | + | chr3_3:85564533-85564552 | Msa0480330:intron | 35.0% |
| ! | ATATACTTTTGTCATCCTCC+AGG | + | chr3_3:85564585-85564604 | Msa0480330:intron | 35.0% |
| ! | GTGATTAAGAGACTAGTTGA+AGG | + | chr3_3:85564733-85564752 | Msa0480330:CDS | 35.0% |
| ! | GATTAAGAGACTAGTTGAAG+GGG | + | chr3_3:85564735-85564754 | Msa0480330:CDS | 35.0% |
| TCAGGTGAATCAAGAACAAA+TGG | + | chr3_3:85564801-85564820 | Msa0480330:intron | 35.0% | |
| ACTTAGTACTAGAGTTTAGC+CGG | + | chr3_3:85565106-85565125 | Msa0480330:three_prime_UTR | 35.0% | |
| !! | ATGGGTTGGAGAGGAATATT+GGG | + | chr3_3:85561426-85561445 | Msa0480330:CDS | 40.0% |
| ATACATGTGAATGTCGTGTC+AGG | + | chr3_3:85561617-85561636 | Msa0480330:intron | 40.0% | |
| ATTACTTGAGGGAGCTCATA+AGG | + | chr3_3:85561808-85561827 | Msa0480330:CDS | 40.0% | |
| CCCAAAGGGTTTATCAGTTA+AGG | - | chr3_3:85561844-85561863 | None:intergenic | 40.0% | |
| !! | ACTGATAAACCCTTTGGGAT+TGG | + | chr3_3:85561846-85561865 | Msa0480330:CDS | 40.0% |
| !!! | AGTTCTAGCTTTTCCTCATG+AGG | + | chr3_3:85561872-85561891 | Msa0480330:CDS | 40.0% |
| TGGGGTTAAAATTGTTCCAC+AGG | + | chr3_3:85561989-85562008 | Msa0480330:CDS | 40.0% | |
| GCAATTGGATGATTGCTAGT+TGG | + | chr3_3:85562547-85562566 | Msa0480330:intron | 40.0% | |
| ATTGGATGATTGCTAGTTGG+TGG | + | chr3_3:85562550-85562569 | Msa0480330:intron | 40.0% | |
| ACATTCTTAAGTCAAGCAGC+TGG | - | chr3_3:85562584-85562603 | None:intergenic | 40.0% | |
| GCAAAAAAGGCAATTGATGC+AGG | + | chr3_3:85562717-85562736 | Msa0480330:CDS | 40.0% | |
| ACCTTGCAGAATGATTCCAT+CGG | - | chr3_3:85562745-85562764 | None:intergenic | 40.0% | |
| TTGCAGTCAATTGTGACAGT+AGG | - | chr3_3:85563017-85563036 | None:intergenic | 40.0% | |
| ! | AACAGACCATGAGGTTTTCA+GGG | - | chr3_3:85563130-85563149 | None:intergenic | 40.0% |
| TTCACGGCTTCCTCAAATTA+AGG | - | chr3_3:85563235-85563254 | None:intergenic | 40.0% | |
| ! | CAACAGTAATGGAAAGGACT+AGG | - | chr3_3:85563511-85563530 | None:intergenic | 40.0% |
| ! | TTCCCCCTGTATTTTATTGC+AGG | + | chr3_3:85563547-85563566 | Msa0480330:intron | 40.0% |
| !! | GTTTAATTTCATTGGTGCCG+AGG | + | chr3_3:85563573-85563592 | Msa0480330:CDS | 40.0% |
| GATATACCTGTTATTGCAGC+TGG | + | chr3_3:85563620-85563639 | Msa0480330:CDS | 40.0% | |
| ATGACTGAGGAAAATGGTGA+TGG | + | chr3_3:85563934-85563953 | Msa0480330:intron | 40.0% | |
| !! | TGAGGAAAATGGTGATGGAA+GGG | + | chr3_3:85563939-85563958 | Msa0480330:intron | 40.0% |
| !! | TCTTGACTTGTTGGTGAATC+AGG | - | chr3_3:85564203-85564222 | None:intergenic | 40.0% |
| !! | ATGCAAATGGTCTTGTTTGC+AGG | + | chr3_3:85564265-85564284 | Msa0480330:intron | 40.0% |
| ACTCGATGAAACTGAGTACA+CGG | + | chr3_3:85564344-85564363 | Msa0480330:CDS | 40.0% | |
| ACTGAGTACACGGATGTATT+TGG | + | chr3_3:85564354-85564373 | Msa0480330:CDS | 40.0% | |
| CTGAGTACACGGATGTATTT+GGG | + | chr3_3:85564355-85564374 | Msa0480330:CDS | 40.0% | |
| AGACACCTTTCTTCAAAGAC+TGG | + | chr3_3:85564415-85564434 | Msa0480330:CDS | 40.0% | |
| ! | GATCTCCAGTCTTTGAAGAA+AGG | - | chr3_3:85564423-85564442 | None:intergenic | 40.0% |
| TTCACTTTCATGAGCTGGAA+GGG | - | chr3_3:85564445-85564464 | None:intergenic | 40.0% | |
| ATTGGCCATTCAACGATTCA+TGG | + | chr3_3:85564480-85564499 | Msa0480330:CDS | 40.0% | |
| CTCCTGTAGTTGTCATGTTT+GGG | - | chr3_3:85564642-85564661 | None:intergenic | 40.0% | |
| TCTCCTGTAGTTGTCATGTT+TGG | - | chr3_3:85564643-85564662 | None:intergenic | 40.0% | |
| ! | ATGTGTATCTGAGATGCCAA+CGG | + | chr3_3:85564881-85564900 | Msa0480330:intron | 40.0% |
| ! | ATGTGCTTGCTAGAACAACA+TGG | + | chr3_3:85564909-85564928 | Msa0480330:three_prime_UTR | 40.0% |
| TCAATATCTACCGAACACAG+TGG | - | chr3_3:85564941-85564960 | None:intergenic | 40.0% | |
| GTGTTCGGTAGATATTGACA+AGG | + | chr3_3:85564943-85564962 | Msa0480330:three_prime_UTR | 40.0% | |
| !! | TGGAGAATGTCGACTTTCTT+TGG | + | chr3_3:85565011-85565030 | Msa0480330:three_prime_UTR | 40.0% |
| CAATACGTAGAGAGAGAGAG+AGG | + | chr3_3:85561396-85561415 | Msa0480330:five_prime_UTR | 45.0% | |
| AGAGAGAGAGGCTTCAACAT+GGG | + | chr3_3:85561408-85561427 | Msa0480330:exon | 45.0% | |
| !! | CATGGGTTGGAGAGGAATAT+TGG | + | chr3_3:85561425-85561444 | Msa0480330:exon | 45.0% |
| AGGAATCACCGGATTACTTG+AGG | + | chr3_3:85561796-85561815 | Msa0480330:intron | 45.0% | |
| GGAATCACCGGATTACTTGA+GGG | + | chr3_3:85561797-85561816 | Msa0480330:intron | 45.0% | |
| ATGAGCTCCCTCAAGTAATC+CGG | - | chr3_3:85561807-85561826 | None:intergenic | 45.0% | |
| GGGAGCTCATAAGGAAAACA+AGG | + | chr3_3:85561817-85561836 | Msa0480330:CDS | 45.0% | |
| TCCTCATGAGGAGAACTTGA+AGG | + | chr3_3:85561884-85561903 | Msa0480330:CDS | 45.0% | |
| ! | ACCTTCAAGTTCTCCTCATG+AGG | - | chr3_3:85561888-85561907 | None:intergenic | 45.0% |
| GGGTGATTGTACAACCGAAT+TGG | + | chr3_3:85561947-85561966 | Msa0480330:CDS | 45.0% | |
| TACAACCGAATTGGTTGCCA+AGG | + | chr3_3:85561956-85561975 | Msa0480330:CDS | 45.0% | |
| ATGAGCCTTGGCAACCAATT+CGG | - | chr3_3:85561964-85561983 | None:intergenic | 45.0% | |
| GATGGCATAAGACTAACCTG+TGG | - | chr3_3:85562008-85562027 | None:intergenic | 45.0% | |
| ! | CAACGTCTGAGATGCATAGA+CGG | - | chr3_3:85562295-85562314 | None:intergenic | 45.0% |
| GTCTAGACTAAGGGACTGTT+TGG | - | chr3_3:85562392-85562411 | None:intergenic | 45.0% | |
| !! | ATTGCTAGTTGGTGGCTAGT+AGG | + | chr3_3:85562558-85562577 | Msa0480330:intron | 45.0% |
| GAAGCAGGTGGTCATGTTAT+TGG | + | chr3_3:85562768-85562787 | Msa0480330:CDS | 45.0% | |
| AGGTGGTCATGTTATTGGTC+AGG | + | chr3_3:85562773-85562792 | Msa0480330:CDS | 45.0% | |
| GTGTCAGTTCAAGCACAGAA+TGG | + | chr3_3:85562905-85562924 | Msa0480330:intron | 45.0% | |
| ! | GAACAGACCATGAGGTTTTC+AGG | - | chr3_3:85563131-85563150 | None:intergenic | 45.0% |
| ! | AGTAATGGAAAGGACTAGGG+TGG | - | chr3_3:85563507-85563526 | None:intergenic | 45.0% |
| ATACCTGTTATTGCAGCTGG+AGG | + | chr3_3:85563623-85563642 | Msa0480330:CDS | 45.0% | |
| ATTCCTCCAGCTGCAATAAC+AGG | - | chr3_3:85563629-85563648 | None:intergenic | 45.0% | |
| TATGTTGCTGCTCTAGCACT+TGG | + | chr3_3:85563665-85563684 | Msa0480330:CDS | 45.0% | |
| ATCCATAGCAGCCTACATGT+AGG | + | chr3_3:85563831-85563850 | Msa0480330:intron | 45.0% | |
| TGGGGTTAATAGGATGACTG+AGG | + | chr3_3:85563921-85563940 | Msa0480330:intron | 45.0% | |
| !! | CTGAGGAAAATGGTGATGGA+AGG | + | chr3_3:85563938-85563957 | Msa0480330:intron | 45.0% |
| GTGAGCTACACACAGATTAC+AGG | - | chr3_3:85563994-85564013 | None:intergenic | 45.0% | |
| TTGCAGGTTTCTTGCAACTG+AGG | + | chr3_3:85564281-85564300 | Msa0480330:intron | 45.0% | |
| ATGTATTTGGGAGAGCAAGG+TGG | + | chr3_3:85564367-85564386 | Msa0480330:CDS | 45.0% | |
| !! | CTTTGAAGAAAGGTGTCTGC+AGG | - | chr3_3:85564413-85564432 | None:intergenic | 45.0% |
| CTTCACTTTCATGAGCTGGA+AGG | - | chr3_3:85564446-85564465 | None:intergenic | 45.0% | |
| TTGGCTTCACTTTCATGAGC+TGG | - | chr3_3:85564450-85564469 | None:intergenic | 45.0% | |
| TTGAATGGCCAATGACAGGT+TGG | - | chr3_3:85564473-85564492 | None:intergenic | 45.0% | |
| ATCGTTGAATGGCCAATGAC+AGG | - | chr3_3:85564477-85564496 | None:intergenic | 45.0% | |
| !! | AAAGAGATACGCCGTTTTGC+CGG | + | chr3_3:85564610-85564629 | Msa0480330:CDS | 45.0% |
| ! | TGTCATGTTTGGGACTGTAC+CGG | - | chr3_3:85564632-85564651 | None:intergenic | 45.0% |
| GTCCCAAACATGACAACTAC+AGG | + | chr3_3:85564637-85564656 | Msa0480330:CDS | 45.0% | |
| ! | GAGAGCATGTGTATGTATGC+TGG | + | chr3_3:85564667-85564686 | Msa0480330:CDS | 45.0% |
| ATGTATGCTGGCCAAAGTGT+TGG | + | chr3_3:85564679-85564698 | Msa0480330:CDS | 45.0% | |
| CCTTGATGAGACCAACACTT+TGG | - | chr3_3:85564693-85564712 | None:intergenic | 45.0% | |
| !! | CCAAAGTGTTGGTCTCATCA+AGG | + | chr3_3:85564690-85564709 | Msa0480330:CDS | 45.0% |
| ! | ATGGTTTGCACCACTGTGTT+CGG | + | chr3_3:85564928-85564947 | Msa0480330:three_prime_UTR | 45.0% |
| AGTCGACATTCTCCATACTG+AGG | - | chr3_3:85565006-85565025 | None:intergenic | 45.0% | |
| TAGTACTAGAGTTTAGCCGG+AGG | + | chr3_3:85565109-85565128 | Msa0480330:three_prime_UTR | 45.0% | |
| AGTACTAGAGTTTAGCCGGA+GGG | + | chr3_3:85565110-85565129 | Msa0480330:three_prime_UTR | 45.0% | |
| CGGATGTAGGAAGAATGGTG+AGG | - | chr3_3:85561343-85561362 | None:intergenic | 50.0% | |
| GAGAGAGAGAGGCTTCAACA+TGG | + | chr3_3:85561407-85561426 | Msa0480330:exon | 50.0% | |
| AGAGAGGCTTCAACATGGGT+TGG | + | chr3_3:85561412-85561431 | Msa0480330:exon | 50.0% | |
| CCAGAGATATCAGGACCTAG+TGG | - | chr3_3:85561477-85561496 | None:intergenic | 50.0% | |
| CCACTAGGTCCTGATATCTC+TGG | + | chr3_3:85561474-85561493 | Msa0480330:CDS | 50.0% | |
| AGTTGGGGACCAGAGATATC+AGG | - | chr3_3:85561486-85561505 | None:intergenic | 50.0% | |
| GCAACAGCAGCAACAAGTTG+GGG | - | chr3_3:85561501-85561520 | None:intergenic | 50.0% | |
| GGCAACAGCAGCAACAAGTT+GGG | - | chr3_3:85561502-85561521 | None:intergenic | 50.0% | |
| TGGCAACAGCAGCAACAAGT+TGG | - | chr3_3:85561503-85561522 | None:intergenic | 50.0% | |
| !! | AAGCAAAGGTACCCAGTCAG+GGG | - | chr3_3:85561553-85561572 | None:intergenic | 50.0% |
| !! | GAAGCAAAGGTACCCAGTCA+GGG | - | chr3_3:85561554-85561573 | None:intergenic | 50.0% |
| !! | TGAAGCAAAGGTACCCAGTC+AGG | - | chr3_3:85561555-85561574 | None:intergenic | 50.0% |
| TAAGGGGGTGAGTGAAGCAA+AGG | - | chr3_3:85561567-85561586 | None:intergenic | 50.0% | |
| GCCGATGGAATCATTCTGCA+AGG | + | chr3_3:85562741-85562760 | Msa0480330:CDS | 50.0% | |
| ATTCTGCAAGGTCGTGAAGC+AGG | + | chr3_3:85562753-85562772 | Msa0480330:CDS | 50.0% | |
| TCAGGTGTGCATGCTTGTCA+TGG | + | chr3_3:85562791-85562810 | Msa0480330:intron | 50.0% | |
| AGGATGCTGAACAGACCATG+AGG | - | chr3_3:85563139-85563158 | None:intergenic | 50.0% | |
| !! | AATTTCATTGGTGCCGAGGG+TGG | + | chr3_3:85563577-85563596 | Msa0480330:CDS | 50.0% |
| CCAACAAGATTGACCACCCT+CGG | - | chr3_3:85563593-85563612 | None:intergenic | 50.0% | |
| CGAGGGTGGTCAATCTTGTT+GGG | + | chr3_3:85563591-85563610 | Msa0480330:CDS | 50.0% | |
| GAGGGTGGTCAATCTTGTTG+GGG | + | chr3_3:85563592-85563611 | Msa0480330:CDS | 50.0% | |
| GCAGCTGGAGGAATTGTAGA+TGG | + | chr3_3:85563635-85563654 | Msa0480330:CDS | 50.0% | |
| GGAGGAATTGTAGATGGTCG+AGG | + | chr3_3:85563641-85563660 | Msa0480330:CDS | 50.0% | |
| AGCCTACATGTAGGCTGCTA+TGG | - | chr3_3:85563836-85563855 | None:intergenic | 50.0% | |
| CGGATGTATTTGGGAGAGCA+AGG | + | chr3_3:85564364-85564383 | Msa0480330:CDS | 50.0% | |
| GAAGCCAACCAACCTGTCAT+TGG | + | chr3_3:85564462-85564481 | Msa0480330:CDS | 50.0% | |
| !! | ATGGCCAATGACAGGTTGGT+TGG | - | chr3_3:85564469-85564488 | None:intergenic | 50.0% |
| CCACGCCATGAATCGTTGAA+TGG | - | chr3_3:85564488-85564507 | None:intergenic | 50.0% | |
| CCATTCAACGATTCATGGCG+TGG | + | chr3_3:85564485-85564504 | Msa0480330:CDS | 50.0% | |
| AACGGCGTATCTCTTTCTCC+TGG | - | chr3_3:85564606-85564625 | None:intergenic | 50.0% | |
| ! | TTGGGACTGTACCGGCAAAA+CGG | - | chr3_3:85564624-85564643 | None:intergenic | 50.0% |
| ! | TGTATCTGAGATGCCAACGG+AGG | + | chr3_3:85564884-85564903 | Msa0480330:intron | 50.0% |
| AGCAAGCACATAACCTCCGT+TGG | - | chr3_3:85564900-85564919 | None:intergenic | 50.0% | |
| ACTTTGTTACGCGCTGCAGT+GGG | + | chr3_3:85564973-85564992 | Msa0480330:three_prime_UTR | 50.0% | |
| TTTAGCCGGAGGGTAGCAAA+TGG | + | chr3_3:85565120-85565139 | Msa0480330:three_prime_UTR | 50.0% | |
| TTAGCCGGAGGGTAGCAAAT+GGG | + | chr3_3:85565121-85565140 | Msa0480330:three_prime_UTR | 50.0% | |
| !! | GGCTTCAACATGGGTTGGAG+AGG | + | chr3_3:85561417-85561436 | Msa0480330:exon | 55.0% |
| GGCATAGTTCAGGCACCACT+AGG | + | chr3_3:85561459-85561478 | Msa0480330:CDS | 55.0% | |
| GTTGCTGCTGTTGCCAATGC+TGG | + | chr3_3:85561507-85561526 | Msa0480330:CDS | 55.0% | |
| TTGCCAAGGCTCATGCAGCT+GGG | + | chr3_3:85561970-85561989 | Msa0480330:CDS | 55.0% | |
| !! | GCAATTGATGCAGGTGCCGA+TGG | + | chr3_3:85562726-85562745 | Msa0480330:CDS | 55.0% |
| CCGAGGGTGGTCAATCTTGT+TGG | + | chr3_3:85563590-85563609 | Msa0480330:CDS | 55.0% | |
| !! | GCTCTAGCACTTGGTGCTCA+AGG | + | chr3_3:85563674-85563693 | Msa0480330:CDS | 55.0% |
| ! | AAGGCGTCTGTCTAGGCACT+AGG | + | chr3_3:85563693-85563712 | Msa0480330:CDS | 55.0% |
| AGGACACGATGTGGTGCATC+GGG | - | chr3_3:85564393-85564412 | None:intergenic | 55.0% | |
| CAGGACACGATGTGGTGCAT+CGG | - | chr3_3:85564394-85564413 | None:intergenic | 55.0% | |
| GGCGTATCTCTTTCTCCTGG+AGG | - | chr3_3:85564603-85564622 | None:intergenic | 55.0% | |
| GACTTTGTTACGCGCTGCAG+TGG | + | chr3_3:85564972-85564991 | Msa0480330:three_prime_UTR | 55.0% | |
| GTGGGTAGCTGACCTCAGTA+TGG | + | chr3_3:85564991-85565010 | Msa0480330:three_prime_UTR | 55.0% | |
| TAGCCGGAGGGTAGCAAATG+GGG | + | chr3_3:85565122-85565141 | Msa0480330:three_prime_UTR | 55.0% | |
| GTTGCCAATGCTGGCGCTCT+TGG | + | chr3_3:85561516-85561535 | Msa0480330:CDS | 60.0% | |
| !! | AAGGCCAAGAGCGCCAGCAT+TGG | - | chr3_3:85561523-85561542 | None:intergenic | 60.0% |
| ! | TGGCGCTCTTGGCCTTCTCA+GGG | + | chr3_3:85561527-85561546 | Msa0480330:CDS | 60.0% |
| GTTGCCAAGGCTCATGCAGC+TGG | + | chr3_3:85561969-85561988 | Msa0480330:CDS | 60.0% | |
| TGCCAAGGCTCATGCAGCTG+GGG | + | chr3_3:85561971-85561990 | Msa0480330:CDS | 60.0% | |
| AACCCCAGCTGCATGAGCCT+TGG | - | chr3_3:85561976-85561995 | None:intergenic | 60.0% | |
| CTGCAAGGTCGTGAAGCAGG+TGG | + | chr3_3:85562756-85562775 | Msa0480330:CDS | 60.0% | |
| ! | GGTGCTCAAGGCGTCTGTCT+AGG | + | chr3_3:85563686-85563705 | Msa0480330:CDS | 60.0% |
| GGTGTCTGCAGGACACGATG+TGG | - | chr3_3:85564402-85564421 | None:intergenic | 60.0% | |
| ! | CCACCCCATTTGCTACCCTC+CGG | - | chr3_3:85565128-85565147 | None:intergenic | 60.0% |
| AGGGTAGCAAATGGGGTGGC+AGG | + | chr3_3:85565129-85565148 | Msa0480330:three_prime_UTR | 60.0% | |
| GTAGCAAATGGGGTGGCAGG+TGG | + | chr3_3:85565132-85565151 | Msa0480330:three_prime_UTR | 60.0% | |
| ! | CTGGCGCTCTTGGCCTTCTC+AGG | + | chr3_3:85561526-85561545 | Msa0480330:CDS | 65.0% |
| CCTTCTCAGGGCCCCTGACT+GGG | + | chr3_3:85561539-85561558 | Msa0480330:CDS | 65.0% | |
| CCGGAGGGTAGCAAATGGGG+TGG | + | chr3_3:85565125-85565144 | Msa0480330:three_prime_UTR | 65.0% | |
| GCCTTCTCAGGGCCCCTGAC+TGG | + | chr3_3:85561538-85561557 | Msa0480330:CDS | 70.0% | |
| CCCAGTCAGGGGCCCTGAGA+AGG | - | chr3_3:85561542-85561561 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85561303 | 85565160 | 85561303 | ID=Msa0480330;Name=Msa0480330 |
| chr3_3 | mRNA | 85561303 | 85565160 | 85561303 | ID=Msa0480330-mRNA-1;Parent=Msa0480330;Name=Msa0480330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=123|1|1|1|0.83|0.71|7|270|330 |
| chr3_3 | exon | 85561303 | 85561560 | 85561303 | ID=Msa0480330-mRNA-1:exon:24592;Parent=Msa0480330-mRNA-1 |
| chr3_3 | exon | 85561798 | 85562010 | 85561798 | ID=Msa0480330-mRNA-1:exon:24593;Parent=Msa0480330-mRNA-1 |
| chr3_3 | exon | 85562699 | 85562794 | 85562699 | ID=Msa0480330-mRNA-1:exon:24594;Parent=Msa0480330-mRNA-1 |
| chr3_3 | exon | 85563569 | 85563714 | 85563569 | ID=Msa0480330-mRNA-1:exon:24595;Parent=Msa0480330-mRNA-1 |
| chr3_3 | exon | 85564287 | 85564506 | 85564287 | ID=Msa0480330-mRNA-1:exon:24596;Parent=Msa0480330-mRNA-1 |
| chr3_3 | exon | 85564607 | 85564804 | 85564607 | ID=Msa0480330-mRNA-1:exon:24597;Parent=Msa0480330-mRNA-1 |
| chr3_3 | exon | 85564906 | 85565160 | 85564906 | ID=Msa0480330-mRNA-1:exon:24598;Parent=Msa0480330-mRNA-1 |
| chr3_3 | five_prime_UTR | 85561303 | 85561425 | 85561303 | ID=Msa0480330-mRNA-1:five_prime_utr;Parent=Msa0480330-mRNA-1 |
| chr3_3 | CDS | 85561426 | 85561560 | 85561426 | ID=Msa0480330-mRNA-1:cds;Parent=Msa0480330-mRNA-1 |
| chr3_3 | CDS | 85561798 | 85562010 | 85561798 | ID=Msa0480330-mRNA-1:cds;Parent=Msa0480330-mRNA-1 |
| chr3_3 | CDS | 85562699 | 85562794 | 85562699 | ID=Msa0480330-mRNA-1:cds;Parent=Msa0480330-mRNA-1 |
| chr3_3 | CDS | 85563569 | 85563714 | 85563569 | ID=Msa0480330-mRNA-1:cds;Parent=Msa0480330-mRNA-1 |
| chr3_3 | CDS | 85564287 | 85564506 | 85564287 | ID=Msa0480330-mRNA-1:cds;Parent=Msa0480330-mRNA-1 |
| chr3_3 | CDS | 85564607 | 85564789 | 85564607 | ID=Msa0480330-mRNA-1:cds;Parent=Msa0480330-mRNA-1 |
| chr3_3 | three_prime_UTR | 85564790 | 85564804 | 85564790 | ID=Msa0480330-mRNA-1:three_prime_utr;Parent=Msa0480330-mRNA-1 |
| chr3_3 | three_prime_UTR | 85564906 | 85565160 | 85564906 | ID=Msa0480330-mRNA-1:three_prime_utr;Parent=Msa0480330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
