Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368670 | XP_003600771.1 | 96.667 | 330 | 11 | 0 | 1 | 330 | 1 | 330 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368670 | sp|O05413|NMO_BACSU | 29.345 | 351 | 182 | 12 | 13 | 319 | 14 | 342 | 1.55e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368670 | G7J9Z8 | 96.667 | 330 | 11 | 0 | 1 | 330 | 1 | 330 | 0.0 | 652 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083240 | Msa0368670 | 0.807697 | 4.452682e-50 | -8.615850e-47 |
| Msa0129640 | Msa0368670 | 0.825982 | 3.483548e-54 | -8.615850e-47 |
| Msa0368670 | Msa0415990 | 0.892675 | 1.276073e-74 | -8.615850e-47 |
| Msa0368670 | Msa0480330 | 0.870594 | 1.297349e-66 | -8.615850e-47 |
| Msa0368670 | Msa0481100 | 0.806949 | 6.415396e-50 | -8.615850e-47 |
| Msa0368670 | Msa1217950 | 0.808687 | 2.739907e-50 | -8.615850e-47 |
| Msa0368670 | Msa1412410 | 0.831270 | 1.835560e-55 | -8.615850e-47 |
| Msa0368670 | Msa1427860 | 0.825524 | 4.471862e-54 | -8.615850e-47 |
| Msa0292240 | Msa0368670 | 0.810037 | 1.406334e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368670 | MtrunA17_Chr3g0112501 | 96.667 | 330 | 11 | 0 | 1 | 330 | 1 | 330 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368670 | AT5G64250.2 | 80.122 | 327 | 65 | 0 | 4 | 330 | 2 | 328 | 0.0 | 550 |
| Msa0368670 | AT5G64250.1 | 78.746 | 287 | 61 | 0 | 44 | 330 | 2 | 288 | 3.63e-170 | 474 |
Find 129 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAGTACACGGATGTATT+TGG | 0.206653 | 3_1:+65478370 | Msa0368670:CDS |
| CAAGTAGAATGTCAAATTTC+AGG | 0.216135 | 3_1:+65478799 | Msa0368670:exon |
| CGCAGTATTGCAAACTTATT+GGG | 0.219941 | 3_1:+65475942 | Msa0368670:CDS |
| TCGCAGTATTGCAAACTTAT+TGG | 0.225729 | 3_1:+65475941 | Msa0368670:CDS |
| CATGGGTTGGAGAGGAATAT+TGG | 0.242800 | 3_1:+65475396 | Msa0368670:exon |
| TGGAGAATGTCAACTTTCTT+TGG | 0.246155 | 3_1:+65479026 | Msa0368670:three_prime_UTR |
| GTCTTCTCAGGGCCCCTGAC+TGG | 0.270205 | 3_1:+65475509 | Msa0368670:CDS |
| GTTGCTGCTGTTGCCAATGC+TGG | 0.278425 | 3_1:+65475478 | Msa0368670:CDS |
| GTTGCCAAGGCTCATGCAGC+TGG | 0.294070 | 3_1:+65475985 | Msa0368670:CDS |
| CTGGCGCTCTTGGTCTTCTC+AGG | 0.297133 | 3_1:+65475497 | Msa0368670:CDS |
| GTTGCCAATGCTGGCGCTCT+TGG | 0.309205 | 3_1:+65475487 | Msa0368670:CDS |
| TGTCAACAGTAATAATAGTT+TGG | 0.312289 | 3_1:+65479071 | Msa0368670:three_prime_UTR |
| CCGAGGGTGGTCGATCTTGT+TGG | 0.317317 | 3_1:+65477606 | Msa0368670:CDS |
| GCAGGATAGTTTAATTTCAT+TGG | 0.321318 | 3_1:+65477581 | Msa0368670:intron |
| TCTCCTGTAGTTGTCATGTT+TGG | 0.321848 | 3_1:-65478656 | None:intergenic |
| CGAGGGTGGTCGATCTTGTT+GGG | 0.326794 | 3_1:+65477607 | Msa0368670:CDS |
| CTCCTGTAGTTGTCATGTTT+GGG | 0.329921 | 3_1:-65478655 | None:intergenic |
| CCCAAAGGGTTTATCAGTTA+AGG | 0.349440 | 3_1:-65475857 | None:intergenic |
| TGAAGCAAAGGTACCCAGTC+AGG | 0.362588 | 3_1:-65475523 | None:intergenic |
| GAAGCAGGTGGTCATGTTAT+TGG | 0.369464 | 3_1:+65476784 | Msa0368670:CDS |
| CTGAGTACACGGATGTATTT+GGG | 0.389520 | 3_1:+65478371 | Msa0368670:CDS |
| ATGGGTTGGAGAGGAATATT+GGG | 0.394644 | 3_1:+65475397 | Msa0368670:CDS |
| ACCTTAACTGATAAACCCTT+TGG | 0.409677 | 3_1:+65475856 | Msa0368670:CDS |
| TCCTCATGAGGAGAACTTGA+AGG | 0.419894 | 3_1:+65475900 | Msa0368670:CDS |
| ATTCCTCCAGCTGCAATAAC+AGG | 0.421071 | 3_1:-65477642 | None:intergenic |
| GTCAACAGTAATAATAGTTT+GGG | 0.421537 | 3_1:+65479072 | Msa0368670:three_prime_UTR |
| CCTTAACTGATAAACCCTTT+GGG | 0.435859 | 3_1:+65475857 | Msa0368670:CDS |
| TTGCCAAGGCTCATGCAGCT+GGG | 0.439308 | 3_1:+65475986 | Msa0368670:CDS |
| ATGAGCCTTGGCAACCAATT+CGG | 0.440632 | 3_1:-65475977 | None:intergenic |
| TTGGCTTCACTTTCATGAGC+TGG | 0.447083 | 3_1:-65478463 | None:intergenic |
| ACTGATAAACCCTTTGGGAT+TGG | 0.450635 | 3_1:+65475862 | Msa0368670:CDS |
| AGGACACGATGTGGTGCATC+GGG | 0.451394 | 3_1:-65478406 | None:intergenic |
| ATTGGCCATTCAACGATTCA+TGG | 0.456668 | 3_1:+65478496 | Msa0368670:CDS |
| ATTACTTGAGGGAGCTCATA+AGG | 0.460879 | 3_1:+65475824 | Msa0368670:CDS |
| GTGGGTAGCTGACCTCAGTA+TGG | 0.461928 | 3_1:+65479006 | Msa0368670:three_prime_UTR |
| TCTTCTCAGGGCCCCTGACT+GGG | 0.462442 | 3_1:+65475510 | Msa0368670:CDS |
| AACCCCAGCTGCATGAGCCT+TGG | 0.464043 | 3_1:-65475989 | None:intergenic |
| CAGGACACGATGTGGTGCAT+CGG | 0.467517 | 3_1:-65478407 | None:intergenic |
| ATGGTTTGCACCACTGTGTT+CGG | 0.472913 | 3_1:+65478943 | Msa0368670:three_prime_UTR |
| CCACGCCATGAATCGTTGAA+TGG | 0.474277 | 3_1:-65478501 | None:intergenic |
| AGTTGAGGACCAGAGATATC+AGG | 0.475572 | 3_1:-65475454 | None:intergenic |
| AGGTGGTCATGTTATTGGTC+AGG | 0.479075 | 3_1:+65476789 | Msa0368670:CDS |
| CCTTGATGAGACCAACACTT+TGG | 0.481217 | 3_1:-65478706 | None:intergenic |
| TGGGGTTAAAATTGTTCCAC+AGG | 0.481779 | 3_1:+65476005 | Msa0368670:CDS |
| GAAGCCAACCAACCTGTCAT+TGG | 0.481968 | 3_1:+65478478 | Msa0368670:CDS |
| TTCACTTTCATGAGCTGGAA+GGG | 0.485664 | 3_1:-65478458 | None:intergenic |
| CCACTAGGTCCTGATATCTC+TGG | 0.493195 | 3_1:+65475445 | Msa0368670:CDS |
| GGTGCTCAAGGCGTCTGTCT+AGG | 0.494515 | 3_1:+65477702 | Msa0368670:CDS |
| GCTAAACTCTACCTTAAAGT+TGG | 0.498167 | 3_1:-65479138 | None:intergenic |
| GATATACCTGTTATTGCAGC+TGG | 0.499725 | 3_1:+65477636 | Msa0368670:CDS |
| TTTAATTTCATTGGTGCCGA+GGG | 0.501035 | 3_1:+65477590 | Msa0368670:CDS |
| TTCAAGAAAATATCGGATGT+AGG | 0.501971 | 3_1:-65475326 | None:intergenic |
| CTTCACTTTCATGAGCTGGA+AGG | 0.504016 | 3_1:-65478459 | None:intergenic |
| GGGTGATTGTACAACCGAAT+TGG | 0.505041 | 3_1:+65475963 | Msa0368670:CDS |
| ACTTTAAGGTAGAGTTTAGC+CGG | 0.508505 | 3_1:+65479141 | Msa0368670:three_prime_UTR |
| TGTCATGTTTGGGACTGTAC+CGG | 0.509661 | 3_1:-65478645 | None:intergenic |
| AGGGTAGCAAATGGTGTGGT+AGG | 0.511109 | 3_1:+65479164 | Msa0368670:three_prime_UTR |
| ATGAGCTCCCTCAAGTAATC+CGG | 0.513123 | 3_1:-65475820 | None:intergenic |
| GCTCTAGCACTTGGTGCTCA+AGG | 0.515378 | 3_1:+65477690 | Msa0368670:CDS |
| TGCCAAGGCTCATGCAGCTG+GGG | 0.515416 | 3_1:+65475987 | Msa0368670:CDS |
| GACTTTGTTACGCGCTGCAG+TGG | 0.516644 | 3_1:+65478987 | Msa0368670:three_prime_UTR |
| AATATCGGATGTAGGAAGAA+TGG | 0.519356 | 3_1:-65475318 | None:intergenic |
| ATTCTGCAAGGTCGTGAAGC+AGG | 0.519603 | 3_1:+65476769 | Msa0368670:CDS |
| AGAGAGGCTTCAACATGGGT+TGG | 0.521515 | 3_1:+65475383 | Msa0368670:exon |
| GCAATTGATGCAGGTGCCGA+TGG | 0.521675 | 3_1:+65476742 | Msa0368670:CDS |
| GGATCTCCAGTCTTTGAAGA+AGG | 0.527009 | 3_1:-65478437 | None:intergenic |
| CCAACAAGATCGACCACCCT+CGG | 0.528675 | 3_1:-65477606 | None:intergenic |
| CTTTGAAGAAGGGTGTCTGC+AGG | 0.530394 | 3_1:-65478426 | None:intergenic |
| TATGTTGCTGCTCTAGCACT+TGG | 0.531534 | 3_1:+65477681 | Msa0368670:CDS |
| GCAGCTGGAGGAATTGTAGA+TGG | 0.532469 | 3_1:+65477651 | Msa0368670:CDS |
| TATGAATATGTAGGAATCAC+CGG | 0.533749 | 3_1:+65475801 | Msa0368670:intron |
| GTCCCAAACATGACAACTAC+AGG | 0.543404 | 3_1:+65478653 | Msa0368670:CDS |
| TGGCGCTCTTGGTCTTCTCA+GGG | 0.546270 | 3_1:+65475498 | Msa0368670:CDS |
| AAGACCAAGAGCGCCAGCAT+TGG | 0.548568 | 3_1:-65475491 | None:intergenic |
| GTGATTAAGAGACTAGTTGA+AGG | 0.549736 | 3_1:+65478749 | Msa0368670:CDS |
| TACAACCGAATTGGTTGCCA+AGG | 0.556327 | 3_1:+65475972 | Msa0368670:CDS |
| GGCTTCAACATGGGTTGGAG+AGG | 0.557549 | 3_1:+65475388 | Msa0368670:exon |
| GGAATCACCGGATTACTTGA+GGG | 0.562118 | 3_1:+65475813 | Msa0368670:intron |
| AGAACTAAACCAATCCCAAA+GGG | 0.572201 | 3_1:-65475871 | None:intergenic |
| AATTTCATTGGTGCCGAGGG+TGG | 0.574100 | 3_1:+65477593 | Msa0368670:CDS |
| ATCGTTGAATGGCCAATGAC+AGG | 0.575943 | 3_1:-65478490 | None:intergenic |
| CCAAAGTGTTGGTCTCATCA+AGG | 0.577958 | 3_1:+65478706 | Msa0368670:CDS |
| ATGGCCAATGACAGGTTGGT+TGG | 0.579001 | 3_1:-65478482 | None:intergenic |
| GAGAGCATGTGTATGTATGC+TGG | 0.579458 | 3_1:+65478683 | Msa0368670:CDS |
| CGGATGTATTTGGGAGAGCA+AGG | 0.583192 | 3_1:+65478380 | Msa0368670:CDS |
| AGACACCCTTCTTCAAAGAC+TGG | 0.585269 | 3_1:+65478431 | Msa0368670:CDS |
| CCATTCAACGATTCATGGCG+TGG | 0.585787 | 3_1:+65478501 | Msa0368670:CDS |
| AGGAATCACCGGATTACTTG+AGG | 0.586705 | 3_1:+65475812 | Msa0368670:intron |
| ACCTTCAAGTTCTCCTCATG+AGG | 0.587452 | 3_1:-65475901 | None:intergenic |
| GGAGGAATTGTAGATGGTCG+AGG | 0.589092 | 3_1:+65477657 | Msa0368670:CDS |
| GTTTAATTTCATTGGTGCCG+AGG | 0.590869 | 3_1:+65477589 | Msa0368670:CDS |
| GAAGCAAAGGTACCCAGTCA+GGG | 0.592954 | 3_1:-65475522 | None:intergenic |
| GCAACAGCAGCAACAAGTTG+AGG | 0.595299 | 3_1:-65475469 | None:intergenic |
| TTTAGCCGGAGGGTAGCAAA+TGG | 0.598116 | 3_1:+65479155 | Msa0368670:three_prime_UTR |
| GATCTCCAGTCTTTGAAGAA+GGG | 0.601040 | 3_1:-65478436 | None:intergenic |
| AAGGCGTCTGTCTAGGCACT+AGG | 0.601536 | 3_1:+65477709 | Msa0368670:CDS |
| GGCATAATTCAGGCACCACT+AGG | 0.602564 | 3_1:+65475430 | Msa0368670:CDS |
| ATGTATGCTGGCCAAAGTGT+TGG | 0.607730 | 3_1:+65478695 | Msa0368670:CDS |
| AGAGAGAGAGGCTTCAACAT+GGG | 0.608247 | 3_1:+65475379 | Msa0368670:exon |
| TGATTAAGAGACTAGTTGAA+GGG | 0.608908 | 3_1:+65478750 | Msa0368670:CDS |
| TAGAACTAAACCAATCCCAA+AGG | 0.616278 | 3_1:-65475872 | None:intergenic |
| TCAGCAATACGTAGAGAGAG+AGG | 0.618082 | 3_1:+65475367 | Msa0368670:five_prime_UTR |
| TTGCAGGTTTCTAGCAACTG+AGG | 0.622657 | 3_1:+65478297 | Msa0368670:intron |
| GGGAGCTCATAAGGAAAACA+AGG | 0.623691 | 3_1:+65475833 | Msa0368670:CDS |
| GCCGATGGAATCATTCTGCA+AGG | 0.624929 | 3_1:+65476757 | Msa0368670:CDS |
| GAGGGTGGTCGATCTTGTTG+GGG | 0.625015 | 3_1:+65477608 | Msa0368670:CDS |
| TAGAGAGAGAGGCTTCAACA+TGG | 0.629940 | 3_1:+65475378 | Msa0368670:exon |
| GATTAAGAGACTAGTTGAAG+GGG | 0.631502 | 3_1:+65478751 | Msa0368670:CDS |
| CCACACCATTTGCTACCCTC+CGG | 0.640186 | 3_1:-65479160 | None:intergenic |
| TAAGGTAGAGTTTAGCCGGA+GGG | 0.642747 | 3_1:+65479145 | Msa0368670:three_prime_UTR |
| ACGTGCTTGCTAGAACAACA+TGG | 0.647395 | 3_1:+65478924 | Msa0368670:three_prime_UTR |
| ACTTTGTTACGCGCTGCAGT+GGG | 0.648409 | 3_1:+65478988 | Msa0368670:three_prime_UTR |
| CTGCAATAACAGGTATATCA+CGG | 0.651296 | 3_1:-65477632 | None:intergenic |
| TTGAATGGCCAATGACAGGT+TGG | 0.651828 | 3_1:-65478486 | None:intergenic |
| ACCTTGCAGAATGATTCCAT+CGG | 0.655332 | 3_1:-65476758 | None:intergenic |
| ATACCTGTTATTGCAGCTGG+AGG | 0.657038 | 3_1:+65477639 | Msa0368670:CDS |
| GCAGTATTGCAAACTTATTG+GGG | 0.657214 | 3_1:+65475943 | Msa0368670:CDS |
| AAGCAAAGGTACCCAGTCAG+GGG | 0.664519 | 3_1:-65475521 | None:intergenic |
| CTGCAAGGTCGTGAAGCAGG+TGG | 0.668201 | 3_1:+65476772 | Msa0368670:CDS |
| ACTCGATGAAACTGAGTACA+CGG | 0.668283 | 3_1:+65478360 | Msa0368670:CDS |
| CCGGAGGGTAGCAAATGGTG+TGG | 0.680667 | 3_1:+65479160 | Msa0368670:three_prime_UTR |
| GTGTTCGGTAGATATTGACA+AGG | 0.692935 | 3_1:+65478958 | Msa0368670:three_prime_UTR |
| GGTGTCTGCAGGACACGATG+TGG | 0.698309 | 3_1:-65478415 | None:intergenic |
| ATGTATTTGGGAGAGCAAGG+TGG | 0.699779 | 3_1:+65478383 | Msa0368670:CDS |
| AGTTGACATTCTCCATACTG+AGG | 0.704938 | 3_1:-65479018 | None:intergenic |
| TTAAGGTAGAGTTTAGCCGG+AGG | 0.706850 | 3_1:+65479144 | Msa0368670:three_prime_UTR |
| CCAGAGATATCAGGACCTAG+TGG | 0.707710 | 3_1:-65475445 | None:intergenic |
| CGGATGTAGGAAGAATGGTG+AGG | 0.712883 | 3_1:-65475313 | None:intergenic |
| TCAATATCTACCGAACACAG+TGG | 0.743079 | 3_1:-65478953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGATAATAAATTAATAAG+GGG | - | chr3_1:65475554-65475573 | None:intergenic | 10.0% |
| !! | GTTAGATAATAAATTAATAA+GGG | - | chr3_1:65475555-65475574 | None:intergenic | 10.0% |
| !! | TGTTAGATAATAAATTAATA+AGG | - | chr3_1:65475556-65475575 | None:intergenic | 10.0% |
| !! | TGTAAAATAAAAATTAAAAC+AGG | - | chr3_1:65476496-65476515 | None:intergenic | 10.0% |
| !! | AAGTATATAATCAAATAAAA+AGG | - | chr3_1:65478589-65478608 | None:intergenic | 10.0% |
| !! | TAGATAATAAATTAATAAGG+GGG | - | chr3_1:65475553-65475572 | None:intergenic | 15.0% |
| !! | TTTATAATTTATTCCAAAAC+AGG | - | chr3_1:65476521-65476540 | None:intergenic | 15.0% |
| !!! | TATATTTGTGTTTCTATTAT+AGG | + | chr3_1:65476693-65476712 | Msa0368670:intron | 15.0% |
| !!! | AAATTTTTCTTTTTGATTCA+CGG | - | chr3_1:65477267-65477286 | None:intergenic | 15.0% |
| !!! | ATATTTTGCATATTTAATCT+GGG | + | chr3_1:65477918-65477937 | Msa0368670:intron | 15.0% |
| !!! | GTTTTCTTTCAAGAAAATAT+CGG | - | chr3_1:65475336-65475355 | None:intergenic | 20.0% |
| !! | GGAAAACTAAAATTAGAAAT+GGG | - | chr3_1:65476046-65476065 | None:intergenic | 20.0% |
| !! | AGGAAAACTAAAATTAGAAA+TGG | - | chr3_1:65476047-65476066 | None:intergenic | 20.0% |
| !! | TCAATTGTATATGAATCAAA+AGG | - | chr3_1:65476067-65476086 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+TGG | - | chr3_1:65476133-65476152 | None:intergenic | 20.0% |
| !!! | TTTATTTTACATACCTGTTT+TGG | + | chr3_1:65476505-65476524 | Msa0368670:intron | 20.0% |
| !!! | AAGTTATTTTCATTCTGTTT+GGG | + | chr3_1:65476655-65476674 | Msa0368670:intron | 20.0% |
| !!! | TGTTATTCATTACTTTTGAT+TGG | + | chr3_1:65476964-65476983 | Msa0368670:intron | 20.0% |
| !!! | TTTTTACTATTCTTGAGAAA+AGG | + | chr3_1:65476987-65477006 | Msa0368670:intron | 20.0% |
| !!! | TTTTACTATTCTTGAGAAAA+GGG | + | chr3_1:65476988-65477007 | Msa0368670:intron | 20.0% |
| !! | TGTTTCATATTATAACACTT+AGG | + | chr3_1:65477057-65477076 | Msa0368670:intron | 20.0% |
| !! | AATTTATACCTAGAAACTTT+GGG | + | chr3_1:65477188-65477207 | Msa0368670:intron | 20.0% |
| !!! | ATTGTTTTTTAACTATGGAT+GGG | - | chr3_1:65477349-65477368 | None:intergenic | 20.0% |
| !!! | AACAGATTGTTTTTTAACTA+TGG | - | chr3_1:65477354-65477373 | None:intergenic | 20.0% |
| !! | ACTTATACATGTGATATTTA+AGG | + | chr3_1:65477751-65477770 | Msa0368670:intron | 20.0% |
| !! | ATAAGGAATACAATTGTTTA+AGG | - | chr3_1:65477879-65477898 | None:intergenic | 20.0% |
| !! | ATTCAATATTTGATCTGATA+AGG | - | chr3_1:65477896-65477915 | None:intergenic | 20.0% |
| !!! | CATATTTTGCATATTTAATC+TGG | + | chr3_1:65477917-65477936 | Msa0368670:intron | 20.0% |
| !!! | TATTTTGCATATTTAATCTG+GGG | + | chr3_1:65477919-65477938 | Msa0368670:intron | 20.0% |
| !!! | TGTCTATTTTCTAAAGAATT+TGG | + | chr3_1:65478041-65478060 | Msa0368670:intron | 20.0% |
| !!! | ACTAACTTTCTTTTGTATAT+AGG | - | chr3_1:65478337-65478356 | None:intergenic | 20.0% |
| !!! | GATATTTTAAATGAACAGAA+CGG | - | chr3_1:65478863-65478882 | None:intergenic | 20.0% |
| !! | TTTTGAATATGGCATAATTC+AGG | + | chr3_1:65475420-65475439 | Msa0368670:CDS | 25.0% |
| ! | TGCATATGATAGTACTAAAA+GGG | - | chr3_1:65475764-65475783 | None:intergenic | 25.0% |
| ! | ATGCATATGATAGTACTAAA+AGG | - | chr3_1:65475765-65475784 | None:intergenic | 25.0% |
| ! | AATTGTGTGTATGAATATGT+AGG | + | chr3_1:65475792-65475811 | Msa0368670:intron | 25.0% |
| ! | AACTAAAATTAGAAATGGGA+TGG | - | chr3_1:65476042-65476061 | None:intergenic | 25.0% |
| ! | TCTGATGCATAACTAAAATT+AGG | + | chr3_1:65476107-65476126 | Msa0368670:intron | 25.0% |
| !! | ACTATTTTCATAAACTGTCA+TGG | + | chr3_1:65476260-65476279 | Msa0368670:intron | 25.0% |
| ! | ATAAACATTAAACACTTGTG+GGG | - | chr3_1:65476357-65476376 | None:intergenic | 25.0% |
| ! | CATAAACATTAAACACTTGT+GGG | - | chr3_1:65476358-65476377 | None:intergenic | 25.0% |
| ! | ACATAAACATTAAACACTTG+TGG | - | chr3_1:65476359-65476378 | None:intergenic | 25.0% |
| ! | TGTTTAATGTTTATGTCAGT+AGG | + | chr3_1:65476363-65476382 | Msa0368670:intron | 25.0% |
| !!! | GAAGTTATTTTCATTCTGTT+TGG | + | chr3_1:65476654-65476673 | Msa0368670:intron | 25.0% |
| ! | GAAACACAAATATAAGTAAC+AGG | - | chr3_1:65476687-65476706 | None:intergenic | 25.0% |
| !! | TTTGTGTTTCTATTATAGGT+CGG | + | chr3_1:65476697-65476716 | Msa0368670:intron | 25.0% |
| ! | TTTACTATTCTTGAGAAAAG+GGG | + | chr3_1:65476989-65477008 | Msa0368670:intron | 25.0% |
| ! | TTATAACACTTAGGTTTGAT+AGG | + | chr3_1:65477066-65477085 | Msa0368670:intron | 25.0% |
| ! | ATAAATTGAACTTGGGAATA+AGG | - | chr3_1:65477175-65477194 | None:intergenic | 25.0% |
| ! | TCTAGGTATAAATTGAACTT+GGG | - | chr3_1:65477182-65477201 | None:intergenic | 25.0% |
| ! | TTCTAGGTATAAATTGAACT+TGG | - | chr3_1:65477183-65477202 | None:intergenic | 25.0% |
| ! | CAATTTATACCTAGAAACTT+TGG | + | chr3_1:65477187-65477206 | Msa0368670:intron | 25.0% |
| ! | ATTTATACCTAGAAACTTTG+GGG | + | chr3_1:65477189-65477208 | Msa0368670:intron | 25.0% |
| !!! | GATTGTTTTTTAACTATGGA+TGG | - | chr3_1:65477350-65477369 | None:intergenic | 25.0% |
| ! | AAAAACAATCTGTTGAAATG+AGG | + | chr3_1:65477360-65477379 | Msa0368670:intron | 25.0% |
| !! | TAAAAGATTGATTCCTTCAA+AGG | - | chr3_1:65477439-65477458 | None:intergenic | 25.0% |
| !! | AGGAATCAATCTTTTATTGT+CGG | + | chr3_1:65477443-65477462 | Msa0368670:intron | 25.0% |
| ! | ATATCTATGATCAACAGTAA+TGG | - | chr3_1:65477538-65477557 | None:intergenic | 25.0% |
| ! | ATATTGCTCAATATTCTTTG+AGG | + | chr3_1:65477774-65477793 | Msa0368670:intron | 25.0% |
| !! | ATATTTAATCTGGGGTTAAT+AGG | + | chr3_1:65477927-65477946 | Msa0368670:intron | 25.0% |
| !! | AAGAGAGTTTTCATTTGTAT+GGG | - | chr3_1:65478085-65478104 | None:intergenic | 25.0% |
| !! | AAGACAATCTTAATTTGAAC+AGG | + | chr3_1:65478235-65478254 | Msa0368670:intron | 25.0% |
| ! | AACACTAATATTCATGCAAA+TGG | + | chr3_1:65478268-65478287 | Msa0368670:intron | 25.0% |
| ! | GCTTTCATTTATTTCATTAG+TGG | + | chr3_1:65478534-65478553 | Msa0368670:intron | 25.0% |
| ! | TGTCAACAGTAATAATAGTT+TGG | + | chr3_1:65479071-65479090 | Msa0368670:three_prime_UTR | 25.0% |
| ! | GTCAACAGTAATAATAGTTT+GGG | + | chr3_1:65479072-65479091 | Msa0368670:three_prime_UTR | 25.0% |
| !! | TACTCATTTTACCAACTTTA+AGG | + | chr3_1:65479127-65479146 | Msa0368670:three_prime_UTR | 25.0% |
| TTCAAGAAAATATCGGATGT+AGG | - | chr3_1:65475329-65475348 | None:intergenic | 30.0% | |
| !!! | GGAATATTGGGTTTTGAATA+TGG | + | chr3_1:65475409-65475428 | Msa0368670:CDS | 30.0% |
| TATGAATATGTAGGAATCAC+CGG | + | chr3_1:65475801-65475820 | Msa0368670:intron | 30.0% | |
| AGTAAAACAGTCTAGACTAA+GGG | - | chr3_1:65476417-65476436 | None:intergenic | 30.0% | |
| AAGTAAAACAGTCTAGACTA+AGG | - | chr3_1:65476418-65476437 | None:intergenic | 30.0% | |
| ! | AAGTTTCGAAAGTGCAAAAA+AGG | + | chr3_1:65476720-65476739 | Msa0368670:CDS | 30.0% |
| ATAAGCTATCTTTATCTCAG+TGG | + | chr3_1:65476869-65476888 | Msa0368670:intron | 30.0% | |
| ! | AGGCTTCTCACTAATTTTAT+TGG | - | chr3_1:65477231-65477250 | None:intergenic | 30.0% |
| TCTTAAGTAGCTGATGTAAA+TGG | + | chr3_1:65477481-65477500 | Msa0368670:intron | 30.0% | |
| ! | TATGATCAACAGTAATGGAA+AGG | - | chr3_1:65477533-65477552 | None:intergenic | 30.0% |
| TATCCTGCAATAAAATACAG+GGG | - | chr3_1:65477569-65477588 | None:intergenic | 30.0% | |
| CTATCCTGCAATAAAATACA+GGG | - | chr3_1:65477570-65477589 | None:intergenic | 30.0% | |
| ACTATCCTGCAATAAAATAC+AGG | - | chr3_1:65477571-65477590 | None:intergenic | 30.0% | |
| ! | GCAGGATAGTTTAATTTCAT+TGG | + | chr3_1:65477581-65477600 | Msa0368670:intron | 30.0% |
| ! | CAAGAGAGTTTTCATTTGTA+TGG | - | chr3_1:65478086-65478105 | None:intergenic | 30.0% |
| AAACACAATCACTAATCTTC+AGG | - | chr3_1:65478117-65478136 | None:intergenic | 30.0% | |
| !! | TTAAGATTGTCTTGACTTGT+CGG | - | chr3_1:65478228-65478247 | None:intergenic | 30.0% |
| ! | TGATTAAGAGACTAGTTGAA+GGG | + | chr3_1:65478750-65478769 | Msa0368670:CDS | 30.0% |
| CAAGTAGAATGTCAAATTTC+AGG | + | chr3_1:65478799-65478818 | Msa0368670:exon | 30.0% | |
| TGAATCAAGAACAAATGGAA+TGG | + | chr3_1:65478822-65478841 | Msa0368670:intron | 30.0% | |
| GACACACATACATAAATGTT+AGG | - | chr3_1:65478885-65478904 | None:intergenic | 30.0% | |
| AATATCGGATGTAGGAAGAA+TGG | - | chr3_1:65475321-65475340 | None:intergenic | 35.0% | |
| GATAGTACTAAAAGGGAAAG+TGG | - | chr3_1:65475757-65475776 | None:intergenic | 35.0% | |
| ACCTTAACTGATAAACCCTT+TGG | + | chr3_1:65475856-65475875 | Msa0368670:CDS | 35.0% | |
| CCTTAACTGATAAACCCTTT+GGG | + | chr3_1:65475857-65475876 | Msa0368670:CDS | 35.0% | |
| AGAACTAAACCAATCCCAAA+GGG | - | chr3_1:65475874-65475893 | None:intergenic | 35.0% | |
| TAGAACTAAACCAATCCCAA+AGG | - | chr3_1:65475875-65475894 | None:intergenic | 35.0% | |
| TCGCAGTATTGCAAACTTAT+TGG | + | chr3_1:65475941-65475960 | Msa0368670:CDS | 35.0% | |
| CGCAGTATTGCAAACTTATT+GGG | + | chr3_1:65475942-65475961 | Msa0368670:CDS | 35.0% | |
| GCAGTATTGCAAACTTATTG+GGG | + | chr3_1:65475943-65475962 | Msa0368670:CDS | 35.0% | |
| !!! | GGGTTTTTTAAGAGAGCTTA+TGG | - | chr3_1:65476337-65476356 | None:intergenic | 35.0% |
| ATTGAAGCCAAGAAAGCAAT+TGG | + | chr3_1:65476548-65476567 | Msa0368670:intron | 35.0% | |
| CAATCATCCAATTGCTTTCT+TGG | - | chr3_1:65476558-65476577 | None:intergenic | 35.0% | |
| ! | GAATGTTTGCTGCTAAATGT+AGG | + | chr3_1:65476614-65476633 | Msa0368670:intron | 35.0% |
| TTACAGGCTTGTCAAGATAT+AGG | - | chr3_1:65477118-65477137 | None:intergenic | 35.0% | |
| !! | GGTTTTCAGGGAAATTTTAC+AGG | - | chr3_1:65477134-65477153 | None:intergenic | 35.0% |
| AAATTTCCCTGAAAACCTCA+TGG | + | chr3_1:65477137-65477156 | Msa0368670:intron | 35.0% | |
| AAAATCACCCCAAAGTTTCT+AGG | - | chr3_1:65477199-65477218 | None:intergenic | 35.0% | |
| ! | TAGTGAGAAGCCTTAATTTG+AGG | + | chr3_1:65477238-65477257 | Msa0368670:intron | 35.0% |
| TATGGATGGGAGTGAAAAAT+AGG | - | chr3_1:65477336-65477355 | None:intergenic | 35.0% | |
| TGTTCAATCTTGTCACTGAA+AGG | + | chr3_1:65477385-65477404 | Msa0368670:intron | 35.0% | |
| GCAATGTTCATATCCTTTGA+AGG | + | chr3_1:65477423-65477442 | Msa0368670:intron | 35.0% | |
| ! | AACAGTAATGGAAAGGACTA+GGG | - | chr3_1:65477526-65477545 | None:intergenic | 35.0% |
| ATCCTGCAATAAAATACAGG+GGG | - | chr3_1:65477568-65477587 | None:intergenic | 35.0% | |
| !! | TTTAATTTCATTGGTGCCGA+GGG | + | chr3_1:65477590-65477609 | Msa0368670:CDS | 35.0% |
| CTGCAATAACAGGTATATCA+CGG | - | chr3_1:65477635-65477654 | None:intergenic | 35.0% | |
| ! | TAAGGTATTAGCCTACATGT+AGG | - | chr3_1:65477861-65477880 | None:intergenic | 35.0% |
| AATAGGATGACTGAGGAAAA+TGG | + | chr3_1:65477944-65477963 | Msa0368670:intron | 35.0% | |
| ATGTGAACTTGTGAAAACTC+TGG | - | chr3_1:65478175-65478194 | None:intergenic | 35.0% | |
| !! | ATTAGTGGAAGCATCTTTGT+AGG | + | chr3_1:65478549-65478568 | Msa0368670:intron | 35.0% |
| ! | ATATACTTTTGTCATCCTCC+AGG | + | chr3_1:65478601-65478620 | Msa0368670:intron | 35.0% |
| ! | GTGATTAAGAGACTAGTTGA+AGG | + | chr3_1:65478749-65478768 | Msa0368670:CDS | 35.0% |
| ! | GATTAAGAGACTAGTTGAAG+GGG | + | chr3_1:65478751-65478770 | Msa0368670:CDS | 35.0% |
| TCAGGTGAATCAAGAACAAA+TGG | + | chr3_1:65478817-65478836 | Msa0368670:intron | 35.0% | |
| TGGAGAATGTCAACTTTCTT+TGG | + | chr3_1:65479026-65479045 | Msa0368670:three_prime_UTR | 35.0% | |
| GCTAAACTCTACCTTAAAGT+TGG | - | chr3_1:65479141-65479160 | None:intergenic | 35.0% | |
| !! | ACTTTAAGGTAGAGTTTAGC+CGG | + | chr3_1:65479141-65479160 | Msa0368670:three_prime_UTR | 35.0% |
| !! | ATGGGTTGGAGAGGAATATT+GGG | + | chr3_1:65475397-65475416 | Msa0368670:CDS | 40.0% |
| ATTACTTGAGGGAGCTCATA+AGG | + | chr3_1:65475824-65475843 | Msa0368670:CDS | 40.0% | |
| CCCAAAGGGTTTATCAGTTA+AGG | - | chr3_1:65475860-65475879 | None:intergenic | 40.0% | |
| !! | ACTGATAAACCCTTTGGGAT+TGG | + | chr3_1:65475862-65475881 | Msa0368670:CDS | 40.0% |
| !!! | AGTTCTAGCTTTTCCTCATG+AGG | + | chr3_1:65475888-65475907 | Msa0368670:CDS | 40.0% |
| TGGGGTTAAAATTGTTCCAC+AGG | + | chr3_1:65476005-65476024 | Msa0368670:CDS | 40.0% | |
| GCAATTGGATGATTGCTAGT+TGG | + | chr3_1:65476563-65476582 | Msa0368670:intron | 40.0% | |
| ATTGGATGATTGCTAGTTGG+TGG | + | chr3_1:65476566-65476585 | Msa0368670:intron | 40.0% | |
| ACATTCTTAAGTCAAGCAGC+TGG | - | chr3_1:65476600-65476619 | None:intergenic | 40.0% | |
| GCAAAAAAGGCAATTGATGC+AGG | + | chr3_1:65476733-65476752 | Msa0368670:CDS | 40.0% | |
| ACCTTGCAGAATGATTCCAT+CGG | - | chr3_1:65476761-65476780 | None:intergenic | 40.0% | |
| TTGCAGTCAATTGTGACAGT+AGG | - | chr3_1:65477033-65477052 | None:intergenic | 40.0% | |
| ! | AACAGACCATGAGGTTTTCA+GGG | - | chr3_1:65477146-65477165 | None:intergenic | 40.0% |
| TTCACGGCTTCCTCAAATTA+AGG | - | chr3_1:65477251-65477270 | None:intergenic | 40.0% | |
| ! | CAACAGTAATGGAAAGGACT+AGG | - | chr3_1:65477527-65477546 | None:intergenic | 40.0% |
| ! | TTCCCCCTGTATTTTATTGC+AGG | + | chr3_1:65477563-65477582 | Msa0368670:intron | 40.0% |
| !! | GTTTAATTTCATTGGTGCCG+AGG | + | chr3_1:65477589-65477608 | Msa0368670:CDS | 40.0% |
| GATATACCTGTTATTGCAGC+TGG | + | chr3_1:65477636-65477655 | Msa0368670:CDS | 40.0% | |
| ATGACTGAGGAAAATGGTGA+TGG | + | chr3_1:65477950-65477969 | Msa0368670:intron | 40.0% | |
| !! | TGAGGAAAATGGTGATGGAA+GGG | + | chr3_1:65477955-65477974 | Msa0368670:intron | 40.0% |
| !! | ATGCAAATGGTCTTGTTTGC+AGG | + | chr3_1:65478281-65478300 | Msa0368670:intron | 40.0% |
| ACTCGATGAAACTGAGTACA+CGG | + | chr3_1:65478360-65478379 | Msa0368670:CDS | 40.0% | |
| ACTGAGTACACGGATGTATT+TGG | + | chr3_1:65478370-65478389 | Msa0368670:CDS | 40.0% | |
| CTGAGTACACGGATGTATTT+GGG | + | chr3_1:65478371-65478390 | Msa0368670:CDS | 40.0% | |
| ! | GATCTCCAGTCTTTGAAGAA+GGG | - | chr3_1:65478439-65478458 | None:intergenic | 40.0% |
| TTCACTTTCATGAGCTGGAA+GGG | - | chr3_1:65478461-65478480 | None:intergenic | 40.0% | |
| ATTGGCCATTCAACGATTCA+TGG | + | chr3_1:65478496-65478515 | Msa0368670:CDS | 40.0% | |
| !! | AAAGAGATACGTCGTTTTGC+CGG | + | chr3_1:65478626-65478645 | Msa0368670:CDS | 40.0% |
| CTCCTGTAGTTGTCATGTTT+GGG | - | chr3_1:65478658-65478677 | None:intergenic | 40.0% | |
| TCTCCTGTAGTTGTCATGTT+TGG | - | chr3_1:65478659-65478678 | None:intergenic | 40.0% | |
| TCAATATCTACCGAACACAG+TGG | - | chr3_1:65478956-65478975 | None:intergenic | 40.0% | |
| GTGTTCGGTAGATATTGACA+AGG | + | chr3_1:65478958-65478977 | Msa0368670:three_prime_UTR | 40.0% | |
| AGTTGACATTCTCCATACTG+AGG | - | chr3_1:65479021-65479040 | None:intergenic | 40.0% | |
| TCAGCAATACGTAGAGAGAG+AGG | + | chr3_1:65475367-65475386 | Msa0368670:five_prime_UTR | 45.0% | |
| TAGAGAGAGAGGCTTCAACA+TGG | + | chr3_1:65475378-65475397 | Msa0368670:exon | 45.0% | |
| AGAGAGAGAGGCTTCAACAT+GGG | + | chr3_1:65475379-65475398 | Msa0368670:exon | 45.0% | |
| !! | CATGGGTTGGAGAGGAATAT+TGG | + | chr3_1:65475396-65475415 | Msa0368670:exon | 45.0% |
| AGTTGAGGACCAGAGATATC+AGG | - | chr3_1:65475457-65475476 | None:intergenic | 45.0% | |
| AGGAATCACCGGATTACTTG+AGG | + | chr3_1:65475812-65475831 | Msa0368670:intron | 45.0% | |
| GGAATCACCGGATTACTTGA+GGG | + | chr3_1:65475813-65475832 | Msa0368670:intron | 45.0% | |
| ATGAGCTCCCTCAAGTAATC+CGG | - | chr3_1:65475823-65475842 | None:intergenic | 45.0% | |
| GGGAGCTCATAAGGAAAACA+AGG | + | chr3_1:65475833-65475852 | Msa0368670:CDS | 45.0% | |
| TCCTCATGAGGAGAACTTGA+AGG | + | chr3_1:65475900-65475919 | Msa0368670:CDS | 45.0% | |
| ! | ACCTTCAAGTTCTCCTCATG+AGG | - | chr3_1:65475904-65475923 | None:intergenic | 45.0% |
| GGGTGATTGTACAACCGAAT+TGG | + | chr3_1:65475963-65475982 | Msa0368670:CDS | 45.0% | |
| TACAACCGAATTGGTTGCCA+AGG | + | chr3_1:65475972-65475991 | Msa0368670:CDS | 45.0% | |
| ATGAGCCTTGGCAACCAATT+CGG | - | chr3_1:65475980-65475999 | None:intergenic | 45.0% | |
| GATGGCATAAGACTAACCTG+TGG | - | chr3_1:65476024-65476043 | None:intergenic | 45.0% | |
| ! | CAACGTCTGAGATGCATAGA+CGG | - | chr3_1:65476311-65476330 | None:intergenic | 45.0% |
| GTCTAGACTAAGGGACTGTT+TGG | - | chr3_1:65476408-65476427 | None:intergenic | 45.0% | |
| !! | ATTGCTAGTTGGTGGCTAGT+AGG | + | chr3_1:65476574-65476593 | Msa0368670:intron | 45.0% |
| GAAGCAGGTGGTCATGTTAT+TGG | + | chr3_1:65476784-65476803 | Msa0368670:CDS | 45.0% | |
| AGGTGGTCATGTTATTGGTC+AGG | + | chr3_1:65476789-65476808 | Msa0368670:CDS | 45.0% | |
| GTGTCAGTTCAAGCACAGAA+TGG | + | chr3_1:65476921-65476940 | Msa0368670:intron | 45.0% | |
| ! | GAACAGACCATGAGGTTTTC+AGG | - | chr3_1:65477147-65477166 | None:intergenic | 45.0% |
| ! | AGTAATGGAAAGGACTAGGG+TGG | - | chr3_1:65477523-65477542 | None:intergenic | 45.0% |
| ATACCTGTTATTGCAGCTGG+AGG | + | chr3_1:65477639-65477658 | Msa0368670:CDS | 45.0% | |
| ATTCCTCCAGCTGCAATAAC+AGG | - | chr3_1:65477645-65477664 | None:intergenic | 45.0% | |
| TATGTTGCTGCTCTAGCACT+TGG | + | chr3_1:65477681-65477700 | Msa0368670:CDS | 45.0% | |
| ATCCATAGCAGCCTACATGT+AGG | + | chr3_1:65477847-65477866 | Msa0368670:intron | 45.0% | |
| TGGGGTTAATAGGATGACTG+AGG | + | chr3_1:65477937-65477956 | Msa0368670:intron | 45.0% | |
| !! | CTGAGGAAAATGGTGATGGA+AGG | + | chr3_1:65477954-65477973 | Msa0368670:intron | 45.0% |
| GTGAGCTACACACAGATTAC+AGG | - | chr3_1:65478010-65478029 | None:intergenic | 45.0% | |
| !! | TCTTGACTTGTCGGTGAATC+AGG | - | chr3_1:65478219-65478238 | None:intergenic | 45.0% |
| !! | TTGCAGGTTTCTAGCAACTG+AGG | + | chr3_1:65478297-65478316 | Msa0368670:intron | 45.0% |
| ATGTATTTGGGAGAGCAAGG+TGG | + | chr3_1:65478383-65478402 | Msa0368670:CDS | 45.0% | |
| AGACACCCTTCTTCAAAGAC+TGG | + | chr3_1:65478431-65478450 | Msa0368670:CDS | 45.0% | |
| ! | GGATCTCCAGTCTTTGAAGA+AGG | - | chr3_1:65478440-65478459 | None:intergenic | 45.0% |
| CTTCACTTTCATGAGCTGGA+AGG | - | chr3_1:65478462-65478481 | None:intergenic | 45.0% | |
| TTGGCTTCACTTTCATGAGC+TGG | - | chr3_1:65478466-65478485 | None:intergenic | 45.0% | |
| TTGAATGGCCAATGACAGGT+TGG | - | chr3_1:65478489-65478508 | None:intergenic | 45.0% | |
| ATCGTTGAATGGCCAATGAC+AGG | - | chr3_1:65478493-65478512 | None:intergenic | 45.0% | |
| AACGACGTATCTCTTTCTCC+TGG | - | chr3_1:65478622-65478641 | None:intergenic | 45.0% | |
| ! | TGTCATGTTTGGGACTGTAC+CGG | - | chr3_1:65478648-65478667 | None:intergenic | 45.0% |
| GTCCCAAACATGACAACTAC+AGG | + | chr3_1:65478653-65478672 | Msa0368670:CDS | 45.0% | |
| ! | GAGAGCATGTGTATGTATGC+TGG | + | chr3_1:65478683-65478702 | Msa0368670:CDS | 45.0% |
| ATGTATGCTGGCCAAAGTGT+TGG | + | chr3_1:65478695-65478714 | Msa0368670:CDS | 45.0% | |
| CCTTGATGAGACCAACACTT+TGG | - | chr3_1:65478709-65478728 | None:intergenic | 45.0% | |
| !! | CCAAAGTGTTGGTCTCATCA+AGG | + | chr3_1:65478706-65478725 | Msa0368670:CDS | 45.0% |
| ! | ATGTGTGTCTGAGATGCCAA+CGG | + | chr3_1:65478896-65478915 | Msa0368670:intron | 45.0% |
| ! | ACGTGCTTGCTAGAACAACA+TGG | + | chr3_1:65478924-65478943 | Msa0368670:three_prime_UTR | 45.0% |
| ! | ATGGTTTGCACCACTGTGTT+CGG | + | chr3_1:65478943-65478962 | Msa0368670:three_prime_UTR | 45.0% |
| TTAAGGTAGAGTTTAGCCGG+AGG | + | chr3_1:65479144-65479163 | Msa0368670:three_prime_UTR | 45.0% | |
| TAAGGTAGAGTTTAGCCGGA+GGG | + | chr3_1:65479145-65479164 | Msa0368670:three_prime_UTR | 45.0% | |
| CGGATGTAGGAAGAATGGTG+AGG | - | chr3_1:65475316-65475335 | None:intergenic | 50.0% | |
| AGAGAGGCTTCAACATGGGT+TGG | + | chr3_1:65475383-65475402 | Msa0368670:exon | 50.0% | |
| GGCATAATTCAGGCACCACT+AGG | + | chr3_1:65475430-65475449 | Msa0368670:CDS | 50.0% | |
| CCAGAGATATCAGGACCTAG+TGG | - | chr3_1:65475448-65475467 | None:intergenic | 50.0% | |
| CCACTAGGTCCTGATATCTC+TGG | + | chr3_1:65475445-65475464 | Msa0368670:CDS | 50.0% | |
| GCAACAGCAGCAACAAGTTG+AGG | - | chr3_1:65475472-65475491 | None:intergenic | 50.0% | |
| !! | AAGCAAAGGTACCCAGTCAG+GGG | - | chr3_1:65475524-65475543 | None:intergenic | 50.0% |
| !! | GAAGCAAAGGTACCCAGTCA+GGG | - | chr3_1:65475525-65475544 | None:intergenic | 50.0% |
| !! | TGAAGCAAAGGTACCCAGTC+AGG | - | chr3_1:65475526-65475545 | None:intergenic | 50.0% |
| TAAGGGGGTGAGTGAAGCAA+AGG | - | chr3_1:65475538-65475557 | None:intergenic | 50.0% | |
| GACTGTGTGAATGTCGTGTC+AGG | + | chr3_1:65475637-65475656 | Msa0368670:intron | 50.0% | |
| GCCGATGGAATCATTCTGCA+AGG | + | chr3_1:65476757-65476776 | Msa0368670:CDS | 50.0% | |
| ATTCTGCAAGGTCGTGAAGC+AGG | + | chr3_1:65476769-65476788 | Msa0368670:CDS | 50.0% | |
| TCAGGTGTGCATGCTTGTCA+TGG | + | chr3_1:65476807-65476826 | Msa0368670:intron | 50.0% | |
| AGGATGCTGAACAGACCATG+AGG | - | chr3_1:65477155-65477174 | None:intergenic | 50.0% | |
| !! | AATTTCATTGGTGCCGAGGG+TGG | + | chr3_1:65477593-65477612 | Msa0368670:CDS | 50.0% |
| GCAGCTGGAGGAATTGTAGA+TGG | + | chr3_1:65477651-65477670 | Msa0368670:CDS | 50.0% | |
| GGAGGAATTGTAGATGGTCG+AGG | + | chr3_1:65477657-65477676 | Msa0368670:CDS | 50.0% | |
| AGCCTACATGTAGGCTGCTA+TGG | - | chr3_1:65477852-65477871 | None:intergenic | 50.0% | |
| CGGATGTATTTGGGAGAGCA+AGG | + | chr3_1:65478380-65478399 | Msa0368670:CDS | 50.0% | |
| !! | CTTTGAAGAAGGGTGTCTGC+AGG | - | chr3_1:65478429-65478448 | None:intergenic | 50.0% |
| GAAGCCAACCAACCTGTCAT+TGG | + | chr3_1:65478478-65478497 | Msa0368670:CDS | 50.0% | |
| !! | ATGGCCAATGACAGGTTGGT+TGG | - | chr3_1:65478485-65478504 | None:intergenic | 50.0% |
| CCACGCCATGAATCGTTGAA+TGG | - | chr3_1:65478504-65478523 | None:intergenic | 50.0% | |
| CCATTCAACGATTCATGGCG+TGG | + | chr3_1:65478501-65478520 | Msa0368670:CDS | 50.0% | |
| GACGTATCTCTTTCTCCTGG+AGG | - | chr3_1:65478619-65478638 | None:intergenic | 50.0% | |
| ACTTTGTTACGCGCTGCAGT+GGG | + | chr3_1:65478988-65479007 | Msa0368670:three_prime_UTR | 50.0% | |
| TTTAGCCGGAGGGTAGCAAA+TGG | + | chr3_1:65479155-65479174 | Msa0368670:three_prime_UTR | 50.0% | |
| !! | GGCTTCAACATGGGTTGGAG+AGG | + | chr3_1:65475388-65475407 | Msa0368670:exon | 55.0% |
| GTTGCTGCTGTTGCCAATGC+TGG | + | chr3_1:65475478-65475497 | Msa0368670:CDS | 55.0% | |
| !! | AAGACCAAGAGCGCCAGCAT+TGG | - | chr3_1:65475494-65475513 | None:intergenic | 55.0% |
| ! | TGGCGCTCTTGGTCTTCTCA+GGG | + | chr3_1:65475498-65475517 | Msa0368670:CDS | 55.0% |
| TTGCCAAGGCTCATGCAGCT+GGG | + | chr3_1:65475986-65476005 | Msa0368670:CDS | 55.0% | |
| !! | GCAATTGATGCAGGTGCCGA+TGG | + | chr3_1:65476742-65476761 | Msa0368670:CDS | 55.0% |
| CCAACAAGATCGACCACCCT+CGG | - | chr3_1:65477609-65477628 | None:intergenic | 55.0% | |
| CGAGGGTGGTCGATCTTGTT+GGG | + | chr3_1:65477607-65477626 | Msa0368670:CDS | 55.0% | |
| GAGGGTGGTCGATCTTGTTG+GGG | + | chr3_1:65477608-65477627 | Msa0368670:CDS | 55.0% | |
| !! | GCTCTAGCACTTGGTGCTCA+AGG | + | chr3_1:65477690-65477709 | Msa0368670:CDS | 55.0% |
| ! | AAGGCGTCTGTCTAGGCACT+AGG | + | chr3_1:65477709-65477728 | Msa0368670:CDS | 55.0% |
| AGGACACGATGTGGTGCATC+GGG | - | chr3_1:65478409-65478428 | None:intergenic | 55.0% | |
| CAGGACACGATGTGGTGCAT+CGG | - | chr3_1:65478410-65478429 | None:intergenic | 55.0% | |
| ! | TGTGTCTGAGATGCCAACGG+AGG | + | chr3_1:65478899-65478918 | Msa0368670:intron | 55.0% |
| AGCAAGCACGTAACCTCCGT+TGG | - | chr3_1:65478915-65478934 | None:intergenic | 55.0% | |
| GACTTTGTTACGCGCTGCAG+TGG | + | chr3_1:65478987-65479006 | Msa0368670:three_prime_UTR | 55.0% | |
| GTGGGTAGCTGACCTCAGTA+TGG | + | chr3_1:65479006-65479025 | Msa0368670:three_prime_UTR | 55.0% | |
| ! | CCACACCATTTGCTACCCTC+CGG | - | chr3_1:65479163-65479182 | None:intergenic | 55.0% |
| GTTGCCAATGCTGGCGCTCT+TGG | + | chr3_1:65475487-65475506 | Msa0368670:CDS | 60.0% | |
| ! | CTGGCGCTCTTGGTCTTCTC+AGG | + | chr3_1:65475497-65475516 | Msa0368670:CDS | 60.0% |
| TCTTCTCAGGGCCCCTGACT+GGG | + | chr3_1:65475510-65475529 | Msa0368670:CDS | 60.0% | |
| GTTGCCAAGGCTCATGCAGC+TGG | + | chr3_1:65475985-65476004 | Msa0368670:CDS | 60.0% | |
| TGCCAAGGCTCATGCAGCTG+GGG | + | chr3_1:65475987-65476006 | Msa0368670:CDS | 60.0% | |
| AACCCCAGCTGCATGAGCCT+TGG | - | chr3_1:65475992-65476011 | None:intergenic | 60.0% | |
| CTGCAAGGTCGTGAAGCAGG+TGG | + | chr3_1:65476772-65476791 | Msa0368670:CDS | 60.0% | |
| CCGAGGGTGGTCGATCTTGT+TGG | + | chr3_1:65477606-65477625 | Msa0368670:CDS | 60.0% | |
| ! | GGTGCTCAAGGCGTCTGTCT+AGG | + | chr3_1:65477702-65477721 | Msa0368670:CDS | 60.0% |
| GGTGTCTGCAGGACACGATG+TGG | - | chr3_1:65478418-65478437 | None:intergenic | 60.0% | |
| CCGGAGGGTAGCAAATGGTG+TGG | + | chr3_1:65479160-65479179 | Msa0368670:three_prime_UTR | 60.0% | |
| GTCTTCTCAGGGCCCCTGAC+TGG | + | chr3_1:65475509-65475528 | Msa0368670:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 65475307 | 65479184 | 65475307 | ID=Msa0368670;Name=Msa0368670 |
| chr3_1 | mRNA | 65475307 | 65479184 | 65475307 | ID=Msa0368670-mRNA-1;Parent=Msa0368670;Name=Msa0368670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=90|1|1|1|0.83|0.71|7|279|330 |
| chr3_1 | exon | 65475307 | 65475531 | 65475307 | ID=Msa0368670-mRNA-1:exon:13111;Parent=Msa0368670-mRNA-1 |
| chr3_1 | exon | 65475814 | 65476026 | 65475814 | ID=Msa0368670-mRNA-1:exon:13112;Parent=Msa0368670-mRNA-1 |
| chr3_1 | exon | 65476715 | 65476810 | 65476715 | ID=Msa0368670-mRNA-1:exon:13113;Parent=Msa0368670-mRNA-1 |
| chr3_1 | exon | 65477585 | 65477730 | 65477585 | ID=Msa0368670-mRNA-1:exon:13114;Parent=Msa0368670-mRNA-1 |
| chr3_1 | exon | 65478303 | 65478522 | 65478303 | ID=Msa0368670-mRNA-1:exon:13115;Parent=Msa0368670-mRNA-1 |
| chr3_1 | exon | 65478623 | 65478820 | 65478623 | ID=Msa0368670-mRNA-1:exon:13116;Parent=Msa0368670-mRNA-1 |
| chr3_1 | exon | 65478921 | 65479184 | 65478921 | ID=Msa0368670-mRNA-1:exon:13117;Parent=Msa0368670-mRNA-1 |
| chr3_1 | five_prime_UTR | 65475307 | 65475396 | 65475307 | ID=Msa0368670-mRNA-1:five_prime_utr;Parent=Msa0368670-mRNA-1 |
| chr3_1 | CDS | 65475397 | 65475531 | 65475397 | ID=Msa0368670-mRNA-1:cds;Parent=Msa0368670-mRNA-1 |
| chr3_1 | CDS | 65475814 | 65476026 | 65475814 | ID=Msa0368670-mRNA-1:cds;Parent=Msa0368670-mRNA-1 |
| chr3_1 | CDS | 65476715 | 65476810 | 65476715 | ID=Msa0368670-mRNA-1:cds;Parent=Msa0368670-mRNA-1 |
| chr3_1 | CDS | 65477585 | 65477730 | 65477585 | ID=Msa0368670-mRNA-1:cds;Parent=Msa0368670-mRNA-1 |
| chr3_1 | CDS | 65478303 | 65478522 | 65478303 | ID=Msa0368670-mRNA-1:cds;Parent=Msa0368670-mRNA-1 |
| chr3_1 | CDS | 65478623 | 65478805 | 65478623 | ID=Msa0368670-mRNA-1:cds;Parent=Msa0368670-mRNA-1 |
| chr3_1 | three_prime_UTR | 65478806 | 65478820 | 65478806 | ID=Msa0368670-mRNA-1:three_prime_utr;Parent=Msa0368670-mRNA-1 |
| chr3_1 | three_prime_UTR | 65478921 | 65479184 | 65478921 | ID=Msa0368670-mRNA-1:three_prime_utr;Parent=Msa0368670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
