Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480610 | XP_003602305.1 | 96.328 | 463 | 13 | 1 | 1 | 463 | 1 | 459 | 0.0 | 900 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480610 | sp|Q6N075|MFSD5_HUMAN | 34.341 | 463 | 273 | 12 | 6 | 460 | 6 | 445 | 2.07e-65 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480610 | G7J858 | 96.328 | 463 | 13 | 1 | 1 | 463 | 1 | 459 | 0.0 | 900 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0480610 | Msa0519760 | 0.801050 | 1.081088e-48 | -8.615850e-47 |
| Msa0480610 | Msa0700970 | 0.800149 | 1.649966e-48 | -8.615850e-47 |
| Msa0480610 | Msa1427110 | 0.804227 | 2.389668e-49 | -8.615850e-47 |
| Msa0279850 | Msa0480610 | 0.810243 | 1.270129e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480610 | MtrunA17_Chr3g0127341 | 96.328 | 463 | 13 | 1 | 1 | 463 | 1 | 459 | 0.0 | 900 |
| Msa0480610 | MtrunA17_Chr5g0401471 | 25.729 | 377 | 244 | 7 | 32 | 401 | 47 | 394 | 1.13e-29 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480610 | AT4G27720.1 | 82.112 | 464 | 78 | 2 | 1 | 463 | 1 | 460 | 0.0 | 790 |
| Msa0480610 | AT3G49310.1 | 78.879 | 464 | 93 | 2 | 1 | 463 | 1 | 460 | 0.0 | 763 |
| Msa0480610 | AT1G64650.1 | 78.495 | 465 | 93 | 3 | 1 | 462 | 1 | 461 | 0.0 | 761 |
| Msa0480610 | AT1G64650.2 | 77.885 | 416 | 85 | 3 | 50 | 462 | 9 | 420 | 0.0 | 675 |
| Msa0480610 | AT2G23093.1 | 24.368 | 435 | 282 | 12 | 30 | 450 | 46 | 447 | 1.57e-17 | 85.1 |
| Msa0480610 | AT2G23093.2 | 24.000 | 400 | 257 | 12 | 65 | 450 | 14 | 380 | 2.25e-15 | 78.2 |
Find 142 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCGCAGCACCCCTAAAT+TGG | 0.113644 | 3_3:+85911963 | None:intergenic |
| CGCCGGGTGCATTCAGCTTT+TGG | 0.118395 | 3_3:-85911244 | Msa0480610:CDS |
| CTTACTTATGTCAATTCTTT+TGG | 0.125118 | 3_3:-85909874 | Msa0480610:three_prime_UTR |
| CAACTCTTCATTGCTGGATT+TGG | 0.156725 | 3_3:-85913531 | Msa0480610:CDS |
| TACAAAATTAAGACAATTAA+AGG | 0.170481 | 3_3:+85909808 | None:intergenic |
| ACAGAGAAATGTTGTAAAAT+TGG | 0.205061 | 3_3:+85914519 | None:intergenic |
| TTCTCGAAGGCTATATTTCT+TGG | 0.216269 | 3_3:-85912166 | Msa0480610:CDS |
| CCCAAAACTTAATCAATTAC+AGG | 0.219139 | 3_3:+85910134 | None:intergenic |
| TTTGGGTCTTCGATGTTATT+TGG | 0.221679 | 3_3:-85913513 | Msa0480610:CDS |
| AGAGCTTGCTTGCCCAATTT+AGG | 0.224575 | 3_3:-85911976 | Msa0480610:CDS |
| ACCTGTAATTGATTAAGTTT+TGG | 0.229731 | 3_3:-85910135 | Msa0480610:exon |
| TTGAGGAGAAATCTCCATTT+TGG | 0.255910 | 3_3:-85909905 | Msa0480610:three_prime_UTR |
| AACTCTTCATTGCTGGATTT+GGG | 0.263781 | 3_3:-85913530 | Msa0480610:CDS |
| TGGGGAATCTCTTCATCATT+TGG | 0.268260 | 3_3:+85911564 | None:intergenic |
| CTTGATGTTGGGCCGTATCT+TGG | 0.280247 | 3_3:-85913289 | Msa0480610:CDS |
| AAAGTTGTGTTGGCATATTC+TGG | 0.280683 | 3_3:-85911206 | Msa0480610:CDS |
| TCCAAACAGCCCAGAAAATA+TGG | 0.295391 | 3_3:+85912129 | None:intergenic |
| GAGCTTGCTTGCCCAATTTA+GGG | 0.300525 | 3_3:-85911975 | Msa0480610:CDS |
| TTCCCTATCACTGTTATGTT+TGG | 0.303539 | 3_3:-85910725 | Msa0480610:CDS |
| GCTGCGGTGGCCATTGCTTC+TGG | 0.308302 | 3_3:-85911950 | Msa0480610:CDS |
| AGTAAGAACTACTACCAAAA+TGG | 0.322831 | 3_3:+85909891 | None:intergenic |
| AACAATGACAAAACTATCTA+AGG | 0.324619 | 3_3:+85911916 | None:intergenic |
| GTGAAGGAGTTCAAGCTAAA+AGG | 0.325343 | 3_3:-85910007 | Msa0480610:three_prime_UTR |
| GGGGAATCTCTTCATCATTT+GGG | 0.327959 | 3_3:+85911565 | None:intergenic |
| CTATACAGTACGTATGGATA+TGG | 0.330750 | 3_3:-85913570 | Msa0480610:CDS |
| TCTCTGTTAACTCGCGATAA+TGG | 0.351173 | 3_3:-85914503 | Msa0480610:exon |
| ATGCCAAACATAACAGTGAT+AGG | 0.360971 | 3_3:+85910722 | None:intergenic |
| CTTGTTGATACATTGGCTCT+TGG | 0.361460 | 3_3:-85912100 | Msa0480610:CDS |
| ATCGGACAACTCTTCATTGC+TGG | 0.362820 | 3_3:-85913537 | Msa0480610:CDS |
| AACTCCTTCACTTGGTTGGT+GGG | 0.364271 | 3_3:+85910019 | None:intergenic |
| AAGGCTATATTTCTTGGAAA+TGG | 0.366820 | 3_3:-85912160 | Msa0480610:CDS |
| CTCGCTTGCATCTAAGTTGA+TGG | 0.381655 | 3_3:-85911496 | Msa0480610:CDS |
| TTGAGATCTCATCTTCATAA+TGG | 0.384178 | 3_3:+85911179 | None:intergenic |
| TTCTCCTCAAGTAAAATAAT+AGG | 0.387414 | 3_3:+85909918 | None:intergenic |
| ACAAAATTAAGACAATTAAA+GGG | 0.391903 | 3_3:+85909809 | None:intergenic |
| ATGAAATCAGGGGCCGGAAG+AGG | 0.395611 | 3_3:-85913380 | Msa0480610:intron |
| ATGTTATTTGGAACAATTGT+GGG | 0.395704 | 3_3:-85913501 | Msa0480610:CDS |
| GGATCTAAGTTTGTCTCGTT+GGG | 0.396886 | 3_3:-85909845 | Msa0480610:three_prime_UTR |
| CTCATTTATTCTCTCATGAT+GGG | 0.397970 | 3_3:-85914355 | Msa0480610:intron |
| TCTCATTTATTCTCTCATGA+TGG | 0.399753 | 3_3:-85914356 | Msa0480610:CDS |
| CACCGCAGCACCCCTAAATT+GGG | 0.400707 | 3_3:+85911964 | None:intergenic |
| AAGTCACACAAGCCCTCTTC+CGG | 0.406948 | 3_3:+85913367 | None:intergenic |
| GCCATACAGTCTCTCTTTGA+AGG | 0.407686 | 3_3:-85911630 | Msa0480610:intron |
| ATTCATGTTATCTTCAATGT+TGG | 0.410052 | 3_3:-85911523 | Msa0480610:CDS |
| TGTATACCTTTGTGTTCCTA+TGG | 0.414069 | 3_3:-85911602 | Msa0480610:CDS |
| GAGAGAGAGAAGGGTGAAGA+AGG | 0.417967 | 3_3:+85914632 | None:intergenic |
| ACACACTCTGCAAGAGAGAC+TGG | 0.419927 | 3_3:-85914550 | Msa0480610:five_prime_UTR |
| TTGTTCTTCTACCTTGTCTT+CGG | 0.421408 | 3_3:-85914478 | Msa0480610:CDS |
| TTCATGTTATCTTCAATGTT+GGG | 0.421818 | 3_3:-85911522 | Msa0480610:CDS |
| GAACTCCTTCACTTGGTTGG+TGG | 0.422041 | 3_3:+85910018 | None:intergenic |
| GACAGAAACTGCATTATGTA+AGG | 0.422323 | 3_3:+85910086 | None:intergenic |
| TTAATCAATTACAGGTTCAA+TGG | 0.426072 | 3_3:+85910142 | None:intergenic |
| CCACCACCTGTGGCTTTAGT+AGG | 0.429699 | 3_3:+85911276 | None:intergenic |
| CATATCCATACGTACTGTAT+AGG | 0.434125 | 3_3:+85913571 | None:intergenic |
| TGAAAACAGAAACAGAAGAT+TGG | 0.434785 | 3_3:-85910195 | Msa0480610:intron |
| CTTGAACTCCTTCACTTGGT+TGG | 0.437650 | 3_3:+85910015 | None:intergenic |
| GAGAAGATAATTGTTCTTGA+AGG | 0.443920 | 3_3:+85914375 | None:intergenic |
| GGTGGTGGTCTCTCATTCGC+CGG | 0.447469 | 3_3:-85911261 | Msa0480610:CDS |
| TCTACATGGACAGAAAACTA+TGG | 0.449195 | 3_3:-85912016 | Msa0480610:CDS |
| AAACCTGCAGCAGCGTCAAA+GGG | 0.457365 | 3_3:+85912067 | None:intergenic |
| GGGATCTAAGTTTGTCTCGT+TGG | 0.458723 | 3_3:-85909846 | Msa0480610:three_prime_UTR |
| TCATCATTTGGGCTCAATGC+AGG | 0.462714 | 3_3:+85911576 | None:intergenic |
| AGTACGTATGGATATGGAAA+AGG | 0.464152 | 3_3:-85913564 | Msa0480610:CDS |
| GTATGGCTATAGCTGGTGAT+TGG | 0.466459 | 3_3:-85913617 | Msa0480610:intron |
| CTGTATAGGTAGTAAACATA+TGG | 0.466801 | 3_3:+85913585 | None:intergenic |
| TTTGAGTGTGAAGGTAAATC+TGG | 0.466842 | 3_3:-85910044 | Msa0480610:three_prime_UTR |
| GTACGTATGGATATGGAAAA+GGG | 0.469222 | 3_3:-85913563 | Msa0480610:CDS |
| GAAATGTTGTAAAATTGGAT+TGG | 0.471122 | 3_3:+85914524 | None:intergenic |
| GGTGATGCAGCTTGCAATGT+AGG | 0.472241 | 3_3:+85913335 | None:intergenic |
| TTGATGTTGGGCCGTATCTT+GGG | 0.472991 | 3_3:-85913288 | Msa0480610:CDS |
| TTCTTCTACCTTGTCTTCGG+TGG | 0.475762 | 3_3:-85914475 | Msa0480610:CDS |
| GCTAGTTGCTGAGCATTTCA+AGG | 0.477810 | 3_3:-85913223 | Msa0480610:intron |
| ATGGTGCTCCTGGCTTCCTC+AGG | 0.477960 | 3_3:+85911150 | None:intergenic |
| AAAGTTCATTATGGTGCTCC+TGG | 0.480496 | 3_3:+85911140 | None:intergenic |
| AAAACCTGCAGCAGCGTCAA+AGG | 0.480550 | 3_3:+85912066 | None:intergenic |
| CAATACAGAGTCTTGATGTT+GGG | 0.480967 | 3_3:-85913300 | Msa0480610:CDS |
| GTTCAAGCTAAAAGGATATG+TGG | 0.483906 | 3_3:-85909999 | Msa0480610:three_prime_UTR |
| GGGTGAAGAAGGTTATATAG+TGG | 0.489029 | 3_3:+85914643 | None:intergenic |
| CCAATTTAGGGGTGCTGCGG+TGG | 0.489380 | 3_3:-85911963 | Msa0480610:CDS |
| ATAGCATACAGTGGTAAGAA+TGG | 0.492139 | 3_3:+85911401 | None:intergenic |
| AATACATTCCTGAGGAAGCC+AGG | 0.496275 | 3_3:-85911158 | Msa0480610:CDS |
| TAGCATACAGTGGTAAGAAT+GGG | 0.504293 | 3_3:+85911402 | None:intergenic |
| TTAGCTTGAACTCCTTCACT+TGG | 0.505499 | 3_3:+85910011 | None:intergenic |
| AAGGCGACTGCTCGTGATTG+CGG | 0.515226 | 3_3:-85910663 | Msa0480610:CDS |
| GTGGTGGTCTCTCATTCGCC+GGG | 0.524709 | 3_3:-85911260 | Msa0480610:CDS |
| GCAGTTCCTACTAAAGCCAC+AGG | 0.525429 | 3_3:-85911282 | Msa0480610:CDS |
| TCAATACAGAGTCTTGATGT+TGG | 0.527647 | 3_3:-85913301 | Msa0480610:CDS |
| AAATGTCCTTGTTGATACAT+TGG | 0.532054 | 3_3:-85912107 | Msa0480610:CDS |
| TACATTGGCTCTTGGACCAG+TGG | 0.533547 | 3_3:-85912092 | Msa0480610:CDS |
| ATAGCTGGTGATTGGTTACA+AGG | 0.536193 | 3_3:-85913609 | Msa0480610:intron |
| TACTCATATCAAGTTTGATG+TGG | 0.540234 | 3_3:+85909726 | None:intergenic |
| ACCCAAAAGCTGAATGCACC+CGG | 0.540450 | 3_3:+85911242 | None:intergenic |
| ATCAGCTACGACGAGTGCGT+TGG | 0.544552 | 3_3:+85914685 | None:intergenic |
| AACAGAAGATTGGCAACTCA+AGG | 0.548096 | 3_3:-85910185 | Msa0480610:CDS |
| CCTACTAAAGCCACAGGTGG+TGG | 0.548441 | 3_3:-85911276 | Msa0480610:CDS |
| TGCTGAAAATAGAAGTGAAG+TGG | 0.548545 | 3_3:+85913257 | None:intergenic |
| TGGCAATGCCACCCAAGATA+CGG | 0.550294 | 3_3:+85913277 | None:intergenic |
| TACTACCTATACAGTACGTA+TGG | 0.551044 | 3_3:-85913576 | Msa0480610:CDS |
| GTTGTAAGATTTGTGTGAGA+TGG | 0.553469 | 3_3:+85914571 | None:intergenic |
| AGATTGGCAACTCAAGGAAA+GGG | 0.555844 | 3_3:-85910179 | Msa0480610:CDS |
| GGATATGGAAAAGGGGAGAT+CGG | 0.557120 | 3_3:-85913555 | Msa0480610:CDS |
| AAGATTGGCAACTCAAGGAA+AGG | 0.560058 | 3_3:-85910180 | Msa0480610:CDS |
| CAGGTTCAATGGCTCTGACT+CGG | 0.560976 | 3_3:+85910153 | None:intergenic |
| TTCAAGCTAAAAGGATATGT+GGG | 0.564130 | 3_3:-85909998 | Msa0480610:three_prime_UTR |
| TGAAATCAGGGGCCGGAAGA+GGG | 0.565483 | 3_3:-85913379 | Msa0480610:intron |
| GATGTTATTTGGAACAATTG+TGG | 0.566231 | 3_3:-85913502 | Msa0480610:CDS |
| TGATCGTGATATTATCTACA+TGG | 0.566672 | 3_3:-85912030 | Msa0480610:CDS |
| GATCTCATCTTCATAATGGA+TGG | 0.570928 | 3_3:+85911183 | None:intergenic |
| TGCCAAACATAACAGTGATA+GGG | 0.571327 | 3_3:+85910723 | None:intergenic |
| GTAAGATACTAGCCATGAAG+AGG | 0.572565 | 3_3:+85910687 | None:intergenic |
| CACACTCTGCAAGAGAGACT+GGG | 0.572731 | 3_3:-85914549 | Msa0480610:five_prime_UTR |
| CGGCTAATCCACCGAAGACA+AGG | 0.577466 | 3_3:+85914467 | None:intergenic |
| AACATCAAGACTCTGTATTG+AGG | 0.584283 | 3_3:+85913303 | None:intergenic |
| CAAAATTAAGACAATTAAAG+GGG | 0.585590 | 3_3:+85909810 | None:intergenic |
| AGCTTGCTTGCCCAATTTAG+GGG | 0.587066 | 3_3:-85911974 | Msa0480610:CDS |
| ACCTGCAGCAGCGTCAAAGG+GGG | 0.590199 | 3_3:+85912069 | None:intergenic |
| AAGAACTATACCAGAAGCAA+TGG | 0.596618 | 3_3:+85911940 | None:intergenic |
| TCTGTATTGAGGAGAATGCT+TGG | 0.601257 | 3_3:+85913314 | None:intergenic |
| ACTCATATCAAGTTTGATGT+GGG | 0.602052 | 3_3:+85909727 | None:intergenic |
| GGCTCAATGCAGGAGTCCAT+AGG | 0.607848 | 3_3:+85911586 | None:intergenic |
| GCTATCATTAACATTCTCGA+AGG | 0.610234 | 3_3:-85912179 | Msa0480610:CDS |
| AGAGGGGCTTTGATCAGCAA+TGG | 0.613910 | 3_3:-85912201 | Msa0480610:CDS |
| TGCCCAATTTAGGGGTGCTG+CGG | 0.615185 | 3_3:-85911966 | Msa0480610:CDS |
| TGCATTGATTAAATGTAGAG+TGG | 0.618944 | 3_3:+85909772 | None:intergenic |
| TTCATACCACTCGTGTCTCG+TGG | 0.619210 | 3_3:-85914596 | Msa0480610:five_prime_UTR |
| GGTGCCCACCAACCAAGTGA+AGG | 0.638815 | 3_3:-85910023 | Msa0480610:three_prime_UTR |
| AACCTGCAGCAGCGTCAAAG+GGG | 0.643247 | 3_3:+85912068 | None:intergenic |
| GAATGAGAGACCACCACCTG+TGG | 0.649574 | 3_3:+85911266 | None:intergenic |
| GGCTCGTTCATCATTCCGTG+TGG | 0.650417 | 3_3:-85911475 | Msa0480610:CDS |
| TACGTATGGATATGGAAAAG+GGG | 0.653213 | 3_3:-85913562 | Msa0480610:CDS |
| GATAGGAAGAGTTAAACTCA+CGG | 0.654831 | 3_3:-85914779 | None:intergenic |
| ACTACGCAATTTGAGTGTGA+AGG | 0.660789 | 3_3:-85910053 | Msa0480610:three_prime_UTR |
| CAAGAGCCAATGTATCAACA+AGG | 0.662983 | 3_3:+85912101 | None:intergenic |
| ATGTTGGGCCGTATCTTGGG+TGG | 0.669526 | 3_3:-85913285 | Msa0480610:CDS |
| AATGATGAAGAGATTCCCCA+TGG | 0.672697 | 3_3:-85911561 | Msa0480610:CDS |
| TCATGGCTAGTATCTTACAA+AGG | 0.673331 | 3_3:-85910682 | Msa0480610:CDS |
| CTCGAGAACAGCAACAACAG+CGG | 0.691907 | 3_3:+85914447 | None:intergenic |
| GAGATCTCAATACATTCCTG+AGG | 0.692563 | 3_3:-85911166 | Msa0480610:CDS |
| ATGGTACCACGAGACACGAG+TGG | 0.702335 | 3_3:+85914590 | None:intergenic |
| GTTCCTACTAAAGCCACAGG+TGG | 0.709599 | 3_3:-85911279 | Msa0480610:CDS |
| AGGAGTCCATAGGAACACAA+AGG | 0.732126 | 3_3:+85911596 | None:intergenic |
| TCTGCATGTAGCTCTCCACA+CGG | 0.735568 | 3_3:+85911460 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTGAAATTGAATT+TGG | - | chr3_3:85910322-85910341 | Msa0480610:intron | 10.0% |
| !! | TATATGATTAACATATTTAA+AGG | + | chr3_3:85911386-85911405 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTATATGAAAAT+GGG | + | chr3_3:85914222-85914241 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTTTATATGAAAA+TGG | + | chr3_3:85914223-85914242 | None:intergenic | 10.0% |
| !! | TATTCAAATTTGAATAATGT+TGG | - | chr3_3:85910611-85910630 | Msa0480610:intron | 15.0% |
| !! | ATCAAATCAACTATATTTAA+AGG | + | chr3_3:85910687-85910706 | None:intergenic | 15.0% |
| !! | AATATGTTAATCATATATGA+AGG | - | chr3_3:85911389-85911408 | Msa0480610:intron | 15.0% |
| !! | ACTATTATATAAGACATTTA+CGG | + | chr3_3:85911415-85911434 | None:intergenic | 15.0% |
| !! | AAATTTAGTAACTATTAACT+AGG | - | chr3_3:85911661-85911680 | Msa0480610:intron | 15.0% |
| !! | AAAATAATGATAACAGAATA+AGG | + | chr3_3:85912723-85912742 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTTTTATGTAC+AGG | - | chr3_3:85913717-85913736 | Msa0480610:intron | 15.0% |
| !! | ACAAAATTAAGACAATTAAA+GGG | + | chr3_3:85914667-85914686 | None:intergenic | 15.0% |
| !! | TACAAAATTAAGACAATTAA+AGG | + | chr3_3:85914668-85914687 | None:intergenic | 15.0% |
| !!! | AATTACCTTACTTTTTTTGT+GGG | + | chr3_3:85909751-85909770 | None:intergenic | 20.0% |
| !!! | TAATTACCTTACTTTTTTTG+TGG | + | chr3_3:85909752-85909771 | None:intergenic | 20.0% |
| !! | AAGAAATAATAAACAGAAGA+TGG | + | chr3_3:85910238-85910257 | None:intergenic | 20.0% |
| !!! | TTTTATGATTTTCTTAGCTT+TGG | - | chr3_3:85910413-85910432 | Msa0480610:intron | 20.0% |
| !! | AAATTTGAATAATGTTGGAT+GGG | - | chr3_3:85910616-85910635 | Msa0480610:intron | 20.0% |
| !!! | CTTTATTATCAAGTTTTATC+TGG | - | chr3_3:85911307-85911326 | Msa0480610:intron | 20.0% |
| !!! | ACAACTACAAATTTTGAAAA+TGG | - | chr3_3:85911596-85911615 | Msa0480610:CDS | 20.0% |
| !! | TTATGTAAATATCAACTATG+TGG | - | chr3_3:85911705-85911724 | Msa0480610:intron | 20.0% |
| !! | TTCATTTAACGAAACAATTA+AGG | - | chr3_3:85911849-85911868 | Msa0480610:intron | 20.0% |
| !! | AAGTACAAAATGTAAAATGA+AGG | + | chr3_3:85912221-85912240 | None:intergenic | 20.0% |
| !! | ATTACTATGTATTTGAACTT+TGG | - | chr3_3:85912593-85912612 | Msa0480610:intron | 20.0% |
| !!! | ATAATTTGACTTTGTTACTT+TGG | - | chr3_3:85913157-85913176 | Msa0480610:intron | 20.0% |
| !! | AATTAGTGCAATATAAAAGT+TGG | + | chr3_3:85913500-85913519 | None:intergenic | 20.0% |
| !! | AAAACAAAAAAGAAAGTTCT+TGG | - | chr3_3:85914232-85914251 | Msa0480610:intron | 20.0% |
| !!! | TTACTTATGTCAATTCTTTT+GGG | - | chr3_3:85914600-85914619 | Msa0480610:five_prime_UTR | 20.0% |
| !! | CAAAATTAAGACAATTAAAG+GGG | + | chr3_3:85914666-85914685 | None:intergenic | 20.0% |
| !!! | TTATATAGTGGTTTTGTGAT+GGG | + | chr3_3:85909821-85909840 | None:intergenic | 25.0% |
| ! | GAAATGTTGTAAAATTGGAT+TGG | + | chr3_3:85909952-85909971 | None:intergenic | 25.0% |
| ! | ACAGAGAAATGTTGTAAAAT+TGG | + | chr3_3:85909957-85909976 | None:intergenic | 25.0% |
| ! | TGAAAACGATGTAATTGAAA+TGG | - | chr3_3:85910347-85910366 | Msa0480610:intron | 25.0% |
| !!! | ATAGTAGTGATGTGTTTTTT+TGG | - | chr3_3:85910445-85910464 | Msa0480610:intron | 25.0% |
| !!! | TACTCTTTTTCTTTGCTTTT+TGG | - | chr3_3:85910488-85910507 | Msa0480610:intron | 25.0% |
| ! | CAAATTTGAATAATGTTGGA+TGG | - | chr3_3:85910615-85910634 | Msa0480610:intron | 25.0% |
| !!! | GTTAGTTTTAGTGATCTAAT+AGG | - | chr3_3:85910823-85910842 | Msa0480610:intron | 25.0% |
| !!! | TAATAGGTTTCGTTTTTGTA+TGG | - | chr3_3:85910839-85910858 | Msa0480610:intron | 25.0% |
| !! | ATGTTATTTGGAACAATTGT+GGG | - | chr3_3:85910972-85910991 | Msa0480610:intron | 25.0% |
| ! | AGACTTCTTAATATGAAATC+AGG | - | chr3_3:85911081-85911100 | Msa0480610:intron | 25.0% |
| ! | GACTTCTTAATATGAAATCA+GGG | - | chr3_3:85911082-85911101 | Msa0480610:intron | 25.0% |
| ! | ACTTCTTAATATGAAATCAG+GGG | - | chr3_3:85911083-85911102 | Msa0480610:intron | 25.0% |
| !!! | TTTGAAAATGGTTTTAGATG+TGG | - | chr3_3:85911608-85911627 | Msa0480610:CDS | 25.0% |
| !!! | ATATCTTCATTGCTTGTTTT+TGG | - | chr3_3:85911907-85911926 | Msa0480610:CDS | 25.0% |
| !!! | TTGGTTTTCATATCCAATTT+AGG | - | chr3_3:85911926-85911945 | Msa0480610:CDS | 25.0% |
| !! | TGGTTTTCATATCCAATTTA+GGG | - | chr3_3:85911927-85911946 | Msa0480610:CDS | 25.0% |
| ! | TAAGGGTAAAAATTGTATTG+TGG | + | chr3_3:85912157-85912176 | None:intergenic | 25.0% |
| ! | AACAATGACAAAACTATCTA+AGG | + | chr3_3:85912560-85912579 | None:intergenic | 25.0% |
| !! | TTTTGTCATTGTTTATACAG+CGG | - | chr3_3:85912567-85912586 | Msa0480610:intron | 25.0% |
| !!! | GGCCATTATTTTATTTTTTC+CGG | - | chr3_3:85912657-85912676 | Msa0480610:intron | 25.0% |
| !!! | GCCATTATTTTATTTTTTCC+GGG | - | chr3_3:85912658-85912677 | Msa0480610:intron | 25.0% |
| ! | TCCCGGAAAAAATAAAATAA+TGG | + | chr3_3:85912662-85912681 | None:intergenic | 25.0% |
| ! | TGTTGCAAAAATAAAACCAT+GGG | + | chr3_3:85912931-85912950 | None:intergenic | 25.0% |
| ! | ATGTTGCAAAAATAAAACCA+TGG | + | chr3_3:85912932-85912951 | None:intergenic | 25.0% |
| ! | ATTCATGTTATCTTCAATGT+TGG | - | chr3_3:85912950-85912969 | Msa0480610:intron | 25.0% |
| ! | TTCATGTTATCTTCAATGTT+GGG | - | chr3_3:85912951-85912970 | Msa0480610:intron | 25.0% |
| ! | ATATTGCACTAATTTGAATC+TGG | - | chr3_3:85913506-85913525 | Msa0480610:CDS | 25.0% |
| ! | TTGCAAAAAGCAAAAGATAT+AGG | - | chr3_3:85913606-85913625 | Msa0480610:CDS | 25.0% |
| ! | TTAATCAATTACAGGTTCAA+TGG | + | chr3_3:85914334-85914353 | None:intergenic | 25.0% |
| !! | ACCTGTAATTGATTAAGTTT+TGG | - | chr3_3:85914338-85914357 | Msa0480610:intron | 25.0% |
| !! | CCTGTAATTGATTAAGTTTT+GGG | - | chr3_3:85914339-85914358 | Msa0480610:intron | 25.0% |
| !!! | TAATTGATTAAGTTTTGGGA+AGG | - | chr3_3:85914343-85914362 | Msa0480610:intron | 25.0% |
| !!! | ATTGCCTATTATTTTACTTG+AGG | - | chr3_3:85914551-85914570 | Msa0480610:five_prime_UTR | 25.0% |
| ! | TTCTCCTCAAGTAAAATAAT+AGG | + | chr3_3:85914558-85914577 | None:intergenic | 25.0% |
| !! | CTTACTTATGTCAATTCTTT+TGG | - | chr3_3:85914599-85914618 | Msa0480610:five_prime_UTR | 25.0% |
| !! | TACTTATGTCAATTCTTTTG+GGG | - | chr3_3:85914601-85914620 | Msa0480610:five_prime_UTR | 25.0% |
| CTTTACCCACAAAAAAAGTA+AGG | - | chr3_3:85909743-85909762 | Msa0480610:three_prime_UTR | 30.0% | |
| !!! | GTTATATAGTGGTTTTGTGA+TGG | + | chr3_3:85909822-85909841 | None:intergenic | 30.0% |
| GAGAAGATAATTGTTCTTGA+AGG | + | chr3_3:85910101-85910120 | None:intergenic | 30.0% | |
| TCTCATTTATTCTCTCATGA+TGG | - | chr3_3:85910117-85910136 | Msa0480610:three_prime_UTR | 30.0% | |
| CTCATTTATTCTCTCATGAT+GGG | - | chr3_3:85910118-85910137 | Msa0480610:three_prime_UTR | 30.0% | |
| GAGTAAAAATCACAACTTCA+AGG | + | chr3_3:85910473-85910492 | None:intergenic | 30.0% | |
| CTGTATAGGTAGTAAACATA+TGG | + | chr3_3:85910891-85910910 | None:intergenic | 30.0% | |
| ! | GATGTTATTTGGAACAATTG+TGG | - | chr3_3:85910971-85910990 | Msa0480610:intron | 30.0% |
| AAAATGCTACGACATATGTA+TGG | + | chr3_3:85911051-85911070 | None:intergenic | 30.0% | |
| ! | CATGAAGTGCTATAATTTGA+AGG | - | chr3_3:85911350-85911369 | Msa0480610:intron | 30.0% |
| TAGTTATTATAAGTACCACG+AGG | - | chr3_3:85911434-85911453 | Msa0480610:CDS | 30.0% | |
| AGATGTGGATCATTATGTTT+AGG | - | chr3_3:85911623-85911642 | Msa0480610:CDS | 30.0% | |
| AAAGCAGAAGAAACAACTAA+TGG | + | chr3_3:85911954-85911973 | None:intergenic | 30.0% | |
| !! | TTCCAAAAGATGTTGATTTC+TGG | - | chr3_3:85912043-85912062 | Msa0480610:CDS | 30.0% |
| !! | TCCAAAAGATGTTGATTTCT+GGG | - | chr3_3:85912044-85912063 | Msa0480610:CDS | 30.0% |
| ! | GCATGTTTATCTTGTTTAGA+GGG | + | chr3_3:85912089-85912108 | None:intergenic | 30.0% |
| ! | TGCATGTTTATCTTGTTTAG+AGG | + | chr3_3:85912090-85912109 | None:intergenic | 30.0% |
| ! | ATTTTACAATATCCTCCAAG+TGG | - | chr3_3:85912109-85912128 | Msa0480610:CDS | 30.0% |
| TTACCCTTAAAATCTGACAA+AGG | - | chr3_3:85912168-85912187 | Msa0480610:CDS | 30.0% | |
| TACCCTTAAAATCTGACAAA+GGG | - | chr3_3:85912169-85912188 | Msa0480610:CDS | 30.0% | |
| ! | AACCCTTTGTCAGATTTTAA+GGG | + | chr3_3:85912174-85912193 | None:intergenic | 30.0% |
| ! | AAACCCTTTGTCAGATTTTA+AGG | + | chr3_3:85912175-85912194 | None:intergenic | 30.0% |
| AAATGAAGGAATCAAGATGA+AGG | + | chr3_3:85912207-85912226 | None:intergenic | 30.0% | |
| AAGGCTATATTTCTTGGAAA+TGG | - | chr3_3:85912313-85912332 | Msa0480610:intron | 30.0% | |
| AAATGTCCTTGTTGATACAT+TGG | - | chr3_3:85912366-85912385 | Msa0480610:intron | 30.0% | |
| TGATCGTGATATTATCTACA+TGG | - | chr3_3:85912443-85912462 | Msa0480610:intron | 30.0% | |
| AATTCATGAACATCTGTACT+AGG | + | chr3_3:85912775-85912794 | None:intergenic | 30.0% | |
| ! | GATGAAAAAATAGCTTTGCT+TGG | - | chr3_3:85912819-85912838 | Msa0480610:intron | 30.0% |
| GTTGCAAAAATAAAACCATG+GGG | + | chr3_3:85912930-85912949 | None:intergenic | 30.0% | |
| ATGTAAATCACAGTACCAAT+GGG | + | chr3_3:85913121-85913140 | None:intergenic | 30.0% | |
| !! | TGTACTTTTGAAAGTTGTGT+TGG | - | chr3_3:85913257-85913276 | Msa0480610:CDS | 30.0% |
| TTGAGATCTCATCTTCATAA+TGG | + | chr3_3:85913297-85913316 | None:intergenic | 30.0% | |
| AATGCGGAAAAAGTTCATTA+TGG | + | chr3_3:85913345-85913364 | None:intergenic | 30.0% | |
| GATCAAGCATTATATCTAAG+CGG | + | chr3_3:85913421-85913440 | None:intergenic | 30.0% | |
| ! | TAGATTGTTTAAGATCAAGC+TGG | + | chr3_3:85913476-85913495 | None:intergenic | 30.0% |
| CAGACATCGTATTTAAGAAA+GGG | + | chr3_3:85913541-85913560 | None:intergenic | 30.0% | |
| CTTTCTTAAATACGATGTCT+GGG | - | chr3_3:85913540-85913559 | Msa0480610:CDS | 30.0% | |
| GTAGAATTCAACAAGATAAC+TGG | + | chr3_3:85913570-85913589 | None:intergenic | 30.0% | |
| !!! | TTTTGCTTTTTGCAAGAAAG+GGG | + | chr3_3:85913601-85913620 | None:intergenic | 30.0% |
| !!! | CTTTTGCTTTTTGCAAGAAA+GGG | + | chr3_3:85913602-85913621 | None:intergenic | 30.0% |
| !!! | TCTTTTGCTTTTTGCAAGAA+AGG | + | chr3_3:85913603-85913622 | None:intergenic | 30.0% |
| AGGCAGGATATATAACATAA+GGG | + | chr3_3:85913958-85913977 | None:intergenic | 30.0% | |
| GTTGATATGCCAGATAATAT+AGG | + | chr3_3:85914130-85914149 | None:intergenic | 30.0% | |
| TGAAAACAGAAACAGAAGAT+TGG | - | chr3_3:85914278-85914297 | Msa0480610:intron | 30.0% | |
| CCCAAAACTTAATCAATTAC+AGG | + | chr3_3:85914342-85914361 | None:intergenic | 30.0% | |
| TTCAAGCTAAAAGGATATGT+GGG | - | chr3_3:85914475-85914494 | Msa0480610:CDS | 30.0% | |
| AGTAAGAACTACTACCAAAA+TGG | + | chr3_3:85914585-85914604 | None:intergenic | 30.0% | |
| ! | ACTTATGTCAATTCTTTTGG+GGG | - | chr3_3:85914602-85914621 | Msa0480610:five_prime_UTR | 30.0% |
| !! | TGCATTGATTAAATGTAGAG+TGG | + | chr3_3:85914704-85914723 | None:intergenic | 30.0% |
| ACTCATATCAAGTTTGATGT+GGG | + | chr3_3:85914749-85914768 | None:intergenic | 30.0% | |
| TACTCATATCAAGTTTGATG+TGG | + | chr3_3:85914750-85914769 | None:intergenic | 30.0% | |
| GTTGTAAGATTTGTGTGAGA+TGG | + | chr3_3:85909905-85909924 | None:intergenic | 35.0% | |
| TTGTTCTTCTACCTTGTCTT+CGG | - | chr3_3:85909995-85910014 | Msa0480610:three_prime_UTR | 35.0% | |
| !!! | GCGTGATTTTGAAATCTGAA+TGG | - | chr3_3:85910376-85910395 | Msa0480610:intron | 35.0% |
| TTCACCAACAACAATGTCAT+CGG | + | chr3_3:85910763-85910782 | None:intergenic | 35.0% | |
| TACTACCTATACAGTACGTA+TGG | - | chr3_3:85910897-85910916 | Msa0480610:intron | 35.0% | |
| CATATCCATACGTACTGTAT+AGG | + | chr3_3:85910905-85910924 | None:intergenic | 35.0% | |
| CTATACAGTACGTATGGATA+TGG | - | chr3_3:85910903-85910922 | Msa0480610:intron | 35.0% | |
| AGTACGTATGGATATGGAAA+AGG | - | chr3_3:85910909-85910928 | Msa0480610:intron | 35.0% | |
| GTACGTATGGATATGGAAAA+GGG | - | chr3_3:85910910-85910929 | Msa0480610:intron | 35.0% | |
| TACGTATGGATATGGAAAAG+GGG | - | chr3_3:85910911-85910930 | Msa0480610:intron | 35.0% | |
| AACTCTTCATTGCTGGATTT+GGG | - | chr3_3:85910943-85910962 | Msa0480610:intron | 35.0% | |
| TTTGGGTCTTCGATGTTATT+TGG | - | chr3_3:85910960-85910979 | Msa0480610:intron | 35.0% | |
| AACATCAAGACTCTGTATTG+AGG | + | chr3_3:85911173-85911192 | None:intergenic | 35.0% | |
| TCAATACAGAGTCTTGATGT+TGG | - | chr3_3:85911172-85911191 | Msa0480610:CDS | 35.0% | |
| CAATACAGAGTCTTGATGTT+GGG | - | chr3_3:85911173-85911192 | Msa0480610:CDS | 35.0% | |
| TGCTGAAAATAGAAGTGAAG+TGG | + | chr3_3:85911219-85911238 | None:intergenic | 35.0% | |
| ! | TATTTTCAGCATTTGAGTCG+TGG | - | chr3_3:85911228-85911247 | Msa0480610:CDS | 35.0% |
| ! | GAAGTGCTATAATTTGAAGG+TGG | - | chr3_3:85911353-85911372 | Msa0480610:intron | 35.0% |
| ACTAAATTTATGCAACACGC+AGG | + | chr3_3:85911650-85911669 | None:intergenic | 35.0% | |
| ATATCAACTATGTGGTGTAG+TGG | - | chr3_3:85911713-85911732 | Msa0480610:intron | 35.0% | |
| ACAAACACACTAGTTGCTAT+CGG | - | chr3_3:85911792-85911811 | Msa0480610:intron | 35.0% | |
| TAACGAAACAATTAAGGCAG+AGG | - | chr3_3:85911855-85911874 | Msa0480610:intron | 35.0% | |
| ! | ACAACTAATGGACCCTAAAT+TGG | + | chr3_3:85911942-85911961 | None:intergenic | 35.0% |
| !! | CCAAAAGATGTTGATTTCTG+GGG | - | chr3_3:85912045-85912064 | Msa0480610:CDS | 35.0% |
| GTGAGCAAAAATCACTTTGT+TGG | + | chr3_3:85912135-85912154 | None:intergenic | 35.0% | |
| TTTCCACATGAATCTATCAG+AGG | - | chr3_3:85912254-85912273 | Msa0480610:intron | 35.0% | |
| TTCCACATGAATCTATCAGA+GGG | - | chr3_3:85912255-85912274 | Msa0480610:intron | 35.0% | |
| GCTATCATTAACATTCTCGA+AGG | - | chr3_3:85912294-85912313 | Msa0480610:intron | 35.0% | |
| TTCTCGAAGGCTATATTTCT+TGG | - | chr3_3:85912307-85912326 | Msa0480610:intron | 35.0% | |
| !! | GTCTTGTTGCCATATTTTCT+GGG | - | chr3_3:85912335-85912354 | Msa0480610:intron | 35.0% |
| TCTACATGGACAGAAAACTA+TGG | - | chr3_3:85912457-85912476 | Msa0480610:intron | 35.0% | |
| AAGAACTATACCAGAAGCAA+TGG | + | chr3_3:85912536-85912555 | None:intergenic | 35.0% | |
| !! | ACTTTGGAACTCTTAATGTG+TGG | - | chr3_3:85912609-85912628 | Msa0480610:intron | 35.0% |
| CATTAATCTGCCTAAGGATT+GGG | - | chr3_3:85912632-85912651 | Msa0480610:intron | 35.0% | |
| ATTTCAACATACATCACTCC+CGG | + | chr3_3:85912679-85912698 | None:intergenic | 35.0% | |
| ! | TTCATCTGAAACGCAATGAA+TGG | + | chr3_3:85912805-85912824 | None:intergenic | 35.0% |
| TGTATACCTTTGTGTTCCTA+TGG | - | chr3_3:85912871-85912890 | Msa0480610:intron | 35.0% | |
| TAGCATACAGTGGTAAGAAT+GGG | + | chr3_3:85913074-85913093 | None:intergenic | 35.0% | |
| ATAGCATACAGTGGTAAGAA+TGG | + | chr3_3:85913075-85913094 | None:intergenic | 35.0% | |
| ATTGGAAGAATAGCATACAG+TGG | + | chr3_3:85913084-85913103 | None:intergenic | 35.0% | |
| GATGTAAATCACAGTACCAA+TGG | + | chr3_3:85913122-85913141 | None:intergenic | 35.0% | |
| ! | AAAGTTGTGTTGGCATATTC+TGG | - | chr3_3:85913267-85913286 | Msa0480610:CDS | 35.0% |
| ! | GATCTCATCTTCATAATGGA+TGG | + | chr3_3:85913293-85913312 | None:intergenic | 35.0% |
| CAAAAATGTTCAGAGGAATG+CGG | + | chr3_3:85913361-85913380 | None:intergenic | 35.0% | |
| ACACACACAAAAATGTTCAG+AGG | + | chr3_3:85913368-85913387 | None:intergenic | 35.0% | |
| AAGCATTATATCTAAGCGGT+AGG | + | chr3_3:85913417-85913436 | None:intergenic | 35.0% | |
| CCAGACATCGTATTTAAGAA+AGG | + | chr3_3:85913542-85913561 | None:intergenic | 35.0% | |
| CCTTTCTTAAATACGATGTC+TGG | - | chr3_3:85913539-85913558 | Msa0480610:CDS | 35.0% | |
| TTCCCTATCACTGTTATGTT+TGG | - | chr3_3:85913748-85913767 | Msa0480610:intron | 35.0% | |
| TGCCAAACATAACAGTGATA+GGG | + | chr3_3:85913753-85913772 | None:intergenic | 35.0% | |
| ATGCCAAACATAACAGTGAT+AGG | + | chr3_3:85913754-85913773 | None:intergenic | 35.0% | |
| TCATGGCTAGTATCTTACAA+AGG | - | chr3_3:85913791-85913810 | Msa0480610:intron | 35.0% | |
| TATACACTACACAAAGCCAA+AGG | + | chr3_3:85913933-85913952 | None:intergenic | 35.0% | |
| GAGGCAGGATATATAACATA+AGG | + | chr3_3:85913959-85913978 | None:intergenic | 35.0% | |
| ! | CATCTAGCTTGAAACATGTT+TGG | + | chr3_3:85914019-85914038 | None:intergenic | 35.0% |
| !!! | ATTGCCCCATTTTGGTTAAT+TGG | - | chr3_3:85914039-85914058 | Msa0480610:intron | 35.0% |
| !!! | TTGCCCCATTTTGGTTAATT+GGG | - | chr3_3:85914040-85914059 | Msa0480610:intron | 35.0% |
| ATGCCCAATTAACCAAAATG+GGG | + | chr3_3:85914046-85914065 | None:intergenic | 35.0% | |
| CATGCCCAATTAACCAAAAT+GGG | + | chr3_3:85914047-85914066 | None:intergenic | 35.0% | |
| ACATGCCCAATTAACCAAAA+TGG | + | chr3_3:85914048-85914067 | None:intergenic | 35.0% | |
| TGCCTTTAAGTAAAAGTCCA+TGG | - | chr3_3:85914074-85914093 | Msa0480610:intron | 35.0% | |
| GCCTTTAAGTAAAAGTCCAT+GGG | - | chr3_3:85914075-85914094 | Msa0480610:intron | 35.0% | |
| ! | ACCCATGGACTTTTACTTAA+AGG | + | chr3_3:85914079-85914098 | None:intergenic | 35.0% |
| TATGCCAGATAATATAGGCA+GGG | + | chr3_3:85914125-85914144 | None:intergenic | 35.0% | |
| ATATGCCAGATAATATAGGC+AGG | + | chr3_3:85914126-85914145 | None:intergenic | 35.0% | |
| TTATCTGGCATATCAACACA+TGG | - | chr3_3:85914133-85914152 | Msa0480610:intron | 35.0% | |
| GACAGAAACTGCATTATGTA+AGG | + | chr3_3:85914390-85914409 | None:intergenic | 35.0% | |
| TTTGAGTGTGAAGGTAAATC+TGG | - | chr3_3:85914429-85914448 | Msa0480610:CDS | 35.0% | |
| GTTCAAGCTAAAAGGATATG+TGG | - | chr3_3:85914474-85914493 | Msa0480610:CDS | 35.0% | |
| ! | TTGAGGAGAAATCTCCATTT+TGG | - | chr3_3:85914568-85914587 | Msa0480610:five_prime_UTR | 35.0% |
| ! | CTTATGTCAATTCTTTTGGG+GGG | - | chr3_3:85914603-85914622 | Msa0480610:five_prime_UTR | 35.0% |
| GGGTGAAGAAGGTTATATAG+TGG | + | chr3_3:85909833-85909852 | None:intergenic | 40.0% | |
| AGATGAAGAGAGAGAGAGAA+GGG | + | chr3_3:85909853-85909872 | None:intergenic | 40.0% | |
| TAGATGAAGAGAGAGAGAGA+AGG | + | chr3_3:85909854-85909873 | None:intergenic | 40.0% | |
| TCTCTGTTAACTCGCGATAA+TGG | - | chr3_3:85909970-85909989 | Msa0480610:three_prime_UTR | 40.0% | |
| ! | CGTTTTTGTATGGCTATAGC+TGG | - | chr3_3:85910849-85910868 | Msa0480610:intron | 40.0% |
| ! | ATAGCTGGTGATTGGTTACA+AGG | - | chr3_3:85910864-85910883 | Msa0480610:intron | 40.0% |
| CAACTCTTCATTGCTGGATT+TGG | - | chr3_3:85910942-85910961 | Msa0480610:intron | 40.0% | |
| CTTAATATGAAATCAGGGGC+CGG | - | chr3_3:85911087-85911106 | Msa0480610:intron | 40.0% | |
| TCTGTATTGAGGAGAATGCT+TGG | + | chr3_3:85911162-85911181 | None:intergenic | 40.0% | |
| ! | TTGGAATCAACCTAGTTTGC+AGG | + | chr3_3:85912029-85912048 | None:intergenic | 40.0% |
| ! | CCCCAGAAATCAACATCTTT+TGG | + | chr3_3:85912048-85912067 | None:intergenic | 40.0% |
| AAATCACTTTGTTGGCCACT+TGG | + | chr3_3:85912127-85912146 | None:intergenic | 40.0% | |
| TCCACATGAATCTATCAGAG+GGG | - | chr3_3:85912256-85912275 | Msa0480610:intron | 40.0% | |
| !!! | GGTCTTGTTGCCATATTTTC+TGG | - | chr3_3:85912334-85912353 | Msa0480610:intron | 40.0% |
| TCCAAACAGCCCAGAAAATA+TGG | + | chr3_3:85912347-85912366 | None:intergenic | 40.0% | |
| CAAGAGCCAATGTATCAACA+AGG | + | chr3_3:85912375-85912394 | None:intergenic | 40.0% | |
| !! | CTTGTTGATACATTGGCTCT+TGG | - | chr3_3:85912373-85912392 | Msa0480610:intron | 40.0% |
| ! | GCTGCAGGTTTTCTTACAAT+TGG | - | chr3_3:85912418-85912437 | Msa0480610:intron | 40.0% |
| GCATTAATCTGCCTAAGGAT+TGG | - | chr3_3:85912631-85912650 | Msa0480610:intron | 40.0% | |
| ACCTTCAAAGAGAGACTGTA+TGG | + | chr3_3:85912847-85912866 | None:intergenic | 40.0% | |
| GGGGAATCTCTTCATCATTT+GGG | + | chr3_3:85912911-85912930 | None:intergenic | 40.0% | |
| TGGGGAATCTCTTCATCATT+TGG | + | chr3_3:85912912-85912931 | None:intergenic | 40.0% | |
| AATGATGAAGAGATTCCCCA+TGG | - | chr3_3:85912912-85912931 | Msa0480610:intron | 40.0% | |
| TAAATCACAGTACCAATGGG+TGG | + | chr3_3:85913118-85913137 | None:intergenic | 40.0% | |
| GAGATCTCAATACATTCCTG+AGG | - | chr3_3:85913307-85913326 | Msa0480610:CDS | 40.0% | |
| AAAGTTCATTATGGTGCTCC+TGG | + | chr3_3:85913336-85913355 | None:intergenic | 40.0% | |
| TCTTAAATACGATGTCTGGG+TGG | - | chr3_3:85913543-85913562 | Msa0480610:CDS | 40.0% | |
| ! | TTTTGCAAGAAAGGGGTTGT+AGG | + | chr3_3:85913594-85913613 | None:intergenic | 40.0% |
| ! | GTGCTCAATTTTCCTCTTCA+TGG | - | chr3_3:85913774-85913793 | Msa0480610:intron | 40.0% |
| GTAAGATACTAGCCATGAAG+AGG | + | chr3_3:85913789-85913808 | None:intergenic | 40.0% | |
| ATTGTAGTGAGGGTCTTACT+TGG | + | chr3_3:85913841-85913860 | None:intergenic | 40.0% | |
| TATCTTTGTCACACAGTGAC+AGG | + | chr3_3:85913864-85913883 | None:intergenic | 40.0% | |
| GCAATTTCTCAGATAAGACG+CGG | + | chr3_3:85913903-85913922 | None:intergenic | 40.0% | |
| AGAAATTGCTCCTACACCTT+TGG | - | chr3_3:85913914-85913933 | Msa0480610:intron | 40.0% | |
| GATCTACCAAAAATAGCTCG+AGG | + | chr3_3:85913978-85913997 | None:intergenic | 40.0% | |
| AGCAGCAAAGAAAAAACCCA+TGG | + | chr3_3:85914094-85914113 | None:intergenic | 40.0% | |
| !!! | GGGTTTTTTCTTTGCTGCTA+AGG | - | chr3_3:85914095-85914114 | Msa0480610:intron | 40.0% |
| ! | ATGTATTTGGTTCGTGTAGC+TGG | + | chr3_3:85914179-85914198 | None:intergenic | 40.0% |
| AACAGAAGATTGGCAACTCA+AGG | - | chr3_3:85914288-85914307 | Msa0480610:intron | 40.0% | |
| AAGATTGGCAACTCAAGGAA+AGG | - | chr3_3:85914293-85914312 | Msa0480610:intron | 40.0% | |
| AGATTGGCAACTCAAGGAAA+GGG | - | chr3_3:85914294-85914313 | Msa0480610:intron | 40.0% | |
| ACTACGCAATTTGAGTGTGA+AGG | - | chr3_3:85914420-85914439 | Msa0480610:CDS | 40.0% | |
| ! | TTAGCTTGAACTCCTTCACT+TGG | + | chr3_3:85914465-85914484 | None:intergenic | 40.0% |
| GTGAAGGAGTTCAAGCTAAA+AGG | - | chr3_3:85914466-85914485 | Msa0480610:CDS | 40.0% | |
| GGATCTAAGTTTGTCTCGTT+GGG | - | chr3_3:85914628-85914647 | Msa0480610:five_prime_UTR | 40.0% | |
| TTCTTCTACCTTGTCTTCGG+TGG | - | chr3_3:85909998-85910017 | Msa0480610:three_prime_UTR | 45.0% | |
| GCTTCCGATGACATTGTTGT+TGG | - | chr3_3:85910756-85910775 | Msa0480610:intron | 45.0% | |
| GTATGGCTATAGCTGGTGAT+TGG | - | chr3_3:85910856-85910875 | Msa0480610:intron | 45.0% | |
| GGATATGGAAAAGGGGAGAT+CGG | - | chr3_3:85910918-85910937 | Msa0480610:intron | 45.0% | |
| ATCGGACAACTCTTCATTGC+TGG | - | chr3_3:85910936-85910955 | Msa0480610:intron | 45.0% | |
| TTGATGTTGGGCCGTATCTT+GGG | - | chr3_3:85911185-85911204 | Msa0480610:CDS | 45.0% | |
| GCTAGTTGCTGAGCATTTCA+AGG | - | chr3_3:85911250-85911269 | Msa0480610:CDS | 45.0% | |
| TTGCTGAGCATTTCAAGGTG+AGG | - | chr3_3:85911255-85911274 | Msa0480610:CDS | 45.0% | |
| AGTACCACGAGGAGAAAAGT+AGG | - | chr3_3:85911445-85911464 | Msa0480610:CDS | 45.0% | |
| !! | ACAACCTACTTTTCTCCTCG+TGG | + | chr3_3:85911452-85911471 | None:intergenic | 45.0% |
| ! | AGTCACTGAGGCATGGTTTT+TGG | - | chr3_3:85911736-85911755 | Msa0480610:intron | 45.0% |
| GCAGAGGCAATACAGTTTGA+TGG | - | chr3_3:85911871-85911890 | Msa0480610:intron | 45.0% | |
| TCAACGTGTTCCTGCAAACT+AGG | - | chr3_3:85912016-85912035 | Msa0480610:CDS | 45.0% | |
| ! | GCCATATTTTCTGGGCTGTT+TGG | - | chr3_3:85912343-85912362 | Msa0480610:intron | 45.0% |
| ! | AGAGCTTGCTTGCCCAATTT+AGG | - | chr3_3:85912497-85912516 | Msa0480610:intron | 45.0% |
| ! | GAGCTTGCTTGCCCAATTTA+GGG | - | chr3_3:85912498-85912517 | Msa0480610:intron | 45.0% |
| ! | AGCTTGCTTGCCCAATTTAG+GGG | - | chr3_3:85912499-85912518 | Msa0480610:intron | 45.0% |
| GTGTGGCATTAATCTGCCTA+AGG | - | chr3_3:85912626-85912645 | Msa0480610:intron | 45.0% | |
| GCCATACAGTCTCTCTTTGA+AGG | - | chr3_3:85912843-85912862 | Msa0480610:intron | 45.0% | |
| AGGAGTCCATAGGAACACAA+AGG | + | chr3_3:85912880-85912899 | None:intergenic | 45.0% | |
| TCATCATTTGGGCTCAATGC+AGG | + | chr3_3:85912900-85912919 | None:intergenic | 45.0% | |
| ! | CTCGCTTGCATCTAAGTTGA+TGG | - | chr3_3:85912977-85912996 | Msa0480610:intron | 45.0% |
| AATACATTCCTGAGGAAGCC+AGG | - | chr3_3:85913315-85913334 | Msa0480610:CDS | 45.0% | |
| AGATAGAGAGAGAGAGAGAG+AGG | + | chr3_3:85913645-85913664 | None:intergenic | 45.0% | |
| CAGTGACAGGATTGTAGTGA+GGG | + | chr3_3:85913851-85913870 | None:intergenic | 45.0% | |
| ACAGTGACAGGATTGTAGTG+AGG | + | chr3_3:85913852-85913871 | None:intergenic | 45.0% | |
| ! | CTACACAAAGCCAAAGGTGT+AGG | + | chr3_3:85913927-85913946 | None:intergenic | 45.0% |
| !! | ATCCTGCCTCGAGCTATTTT+TGG | - | chr3_3:85913969-85913988 | Msa0480610:intron | 45.0% |
| TACCAAAAATAGCTCGAGGC+AGG | + | chr3_3:85913974-85913993 | None:intergenic | 45.0% | |
| AGATCTCTGATACTGCAGCA+AGG | - | chr3_3:85913993-85914012 | Msa0480610:intron | 45.0% | |
| ! | GCTAGATGATTGCCCCATTT+TGG | - | chr3_3:85914031-85914050 | Msa0480610:intron | 45.0% |
| CTTGCCCTGCCTATATTATC+TGG | - | chr3_3:85914118-85914137 | Msa0480610:intron | 45.0% | |
| AACTCCTTCACTTGGTTGGT+GGG | + | chr3_3:85914457-85914476 | None:intergenic | 45.0% | |
| CTTGAACTCCTTCACTTGGT+TGG | + | chr3_3:85914461-85914480 | None:intergenic | 45.0% | |
| !! | ATGTCAATTCTTTTGGGGGG+CGG | - | chr3_3:85914606-85914625 | Msa0480610:five_prime_UTR | 45.0% |
| GGGATCTAAGTTTGTCTCGT+TGG | - | chr3_3:85914627-85914646 | Msa0480610:five_prime_UTR | 45.0% | |
| GAGAGAGAGAAGGGTGAAGA+AGG | + | chr3_3:85909844-85909863 | None:intergenic | 50.0% | |
| TTCATACCACTCGTGTCTCG+TGG | - | chr3_3:85909877-85909896 | Msa0480610:three_prime_UTR | 50.0% | |
| ACACACTCTGCAAGAGAGAC+TGG | - | chr3_3:85909923-85909942 | Msa0480610:three_prime_UTR | 50.0% | |
| CACACTCTGCAAGAGAGACT+GGG | - | chr3_3:85909924-85909943 | Msa0480610:three_prime_UTR | 50.0% | |
| CTCGAGAACAGCAACAACAG+CGG | + | chr3_3:85910029-85910048 | None:intergenic | 50.0% | |
| AAGTCACACAAGCCCTCTTC+CGG | + | chr3_3:85911109-85911128 | None:intergenic | 50.0% | |
| GGTGATGCAGCTTGCAATGT+AGG | + | chr3_3:85911141-85911160 | None:intergenic | 50.0% | |
| CTTGATGTTGGGCCGTATCT+TGG | - | chr3_3:85911184-85911203 | Msa0480610:CDS | 50.0% | |
| TGGCAATGCCACCCAAGATA+CGG | + | chr3_3:85911199-85911218 | None:intergenic | 50.0% | |
| TCACTTTGTTGGCCACTTGG+AGG | + | chr3_3:85912124-85912143 | None:intergenic | 50.0% | |
| GCCCCTCTGATAGATTCATG+TGG | + | chr3_3:85912260-85912279 | None:intergenic | 50.0% | |
| ! | AGAGGGGCTTTGATCAGCAA+TGG | - | chr3_3:85912272-85912291 | Msa0480610:intron | 50.0% |
| !! | TACATTGGCTCTTGGACCAG+TGG | - | chr3_3:85912381-85912400 | Msa0480610:intron | 50.0% |
| AAACCTGCAGCAGCGTCAAA+GGG | + | chr3_3:85912409-85912428 | None:intergenic | 50.0% | |
| AAAACCTGCAGCAGCGTCAA+AGG | + | chr3_3:85912410-85912429 | None:intergenic | 50.0% | |
| AATCTGCCTAAGGATTGGGC+TGG | - | chr3_3:85912636-85912655 | Msa0480610:intron | 50.0% | |
| TAATGGCCAGCCCAATCCTT+AGG | + | chr3_3:85912645-85912664 | None:intergenic | 50.0% | |
| TCTGCATGTAGCTCTCCACA+CGG | + | chr3_3:85913016-85913035 | None:intergenic | 50.0% | |
| ! | TGGGTGGAGGGAGAGTATAT+TGG | + | chr3_3:85913102-85913121 | None:intergenic | 50.0% |
| TATACTCTCCCTCCACCCAT+TGG | - | chr3_3:85913103-85913122 | Msa0480610:intron | 50.0% | |
| TCACAGTACCAATGGGTGGA+GGG | + | chr3_3:85913114-85913133 | None:intergenic | 50.0% | |
| ATCACAGTACCAATGGGTGG+AGG | + | chr3_3:85913115-85913134 | None:intergenic | 50.0% | |
| GCAGTTCCTACTAAAGCCAC+AGG | - | chr3_3:85913191-85913210 | Msa0480610:intron | 50.0% | |
| GTTCCTACTAAAGCCACAGG+TGG | - | chr3_3:85913194-85913213 | Msa0480610:intron | 50.0% | |
| ACCCAAAAGCTGAATGCACC+CGG | + | chr3_3:85913234-85913253 | None:intergenic | 50.0% | |
| !! | CAGGTTCAATGGCTCTGACT+CGG | + | chr3_3:85914323-85914342 | None:intergenic | 50.0% |
| GAACTCCTTCACTTGGTTGG+TGG | + | chr3_3:85914458-85914477 | None:intergenic | 50.0% | |
| !! | TGTCAATTCTTTTGGGGGGC+GGG | - | chr3_3:85914607-85914626 | Msa0480610:five_prime_UTR | 50.0% |
| ATCAGCTACGACGAGTGCGT+TGG | + | chr3_3:85909791-85909810 | None:intergenic | 55.0% | |
| ATGGTACCACGAGACACGAG+TGG | + | chr3_3:85909886-85909905 | None:intergenic | 55.0% | |
| CGGCTAATCCACCGAAGACA+AGG | + | chr3_3:85910009-85910028 | None:intergenic | 55.0% | |
| ATGAAATCAGGGGCCGGAAG+AGG | - | chr3_3:85911093-85911112 | Msa0480610:intron | 55.0% | |
| TGAAATCAGGGGCCGGAAGA+GGG | - | chr3_3:85911094-85911113 | Msa0480610:intron | 55.0% | |
| ATGTTGGGCCGTATCTTGGG+TGG | - | chr3_3:85911188-85911207 | Msa0480610:CDS | 55.0% | |
| ! | GTGGTGTAGTGGAGTCACTG+AGG | - | chr3_3:85911724-85911743 | Msa0480610:intron | 55.0% |
| ! | GTAGTGGAGTCACTGAGGCA+TGG | - | chr3_3:85911729-85911748 | Msa0480610:intron | 55.0% |
| AACCTGCAGCAGCGTCAAAG+GGG | + | chr3_3:85912408-85912427 | None:intergenic | 55.0% | |
| !! | TGCCCAATTTAGGGGTGCTG+CGG | - | chr3_3:85912507-85912526 | Msa0480610:intron | 55.0% |
| CACCGCAGCACCCCTAAATT+GGG | + | chr3_3:85912512-85912531 | None:intergenic | 55.0% | |
| GGCTCAATGCAGGAGTCCAT+AGG | + | chr3_3:85912890-85912909 | None:intergenic | 55.0% | |
| GGCTCGTTCATCATTCCGTG+TGG | - | chr3_3:85912998-85913017 | Msa0480610:intron | 55.0% | |
| !! | CCACCACCTGTGGCTTTAGT+AGG | + | chr3_3:85913200-85913219 | None:intergenic | 55.0% |
| CCTACTAAAGCCACAGGTGG+TGG | - | chr3_3:85913197-85913216 | Msa0480610:intron | 55.0% | |
| GAATGAGAGACCACCACCTG+TGG | + | chr3_3:85913210-85913229 | None:intergenic | 55.0% | |
| ! | GCCGGGTGCATTCAGCTTTT+GGG | - | chr3_3:85913230-85913249 | Msa0480610:CDS | 55.0% |
| AAGGCGACTGCTCGTGATTG+CGG | - | chr3_3:85913810-85913829 | Msa0480610:intron | 55.0% | |
| ACCTGCAGCAGCGTCAAAGG+GGG | + | chr3_3:85912407-85912426 | None:intergenic | 60.0% | |
| CCACCGCAGCACCCCTAAAT+TGG | + | chr3_3:85912513-85912532 | None:intergenic | 60.0% | |
| !! | CCAATTTAGGGGTGCTGCGG+TGG | - | chr3_3:85912510-85912529 | Msa0480610:intron | 60.0% |
| ! | GGTGGTGGTCTCTCATTCGC+CGG | - | chr3_3:85913212-85913231 | Msa0480610:intron | 60.0% |
| GTGGTGGTCTCTCATTCGCC+GGG | - | chr3_3:85913213-85913232 | Msa0480610:intron | 60.0% | |
| ! | CGCCGGGTGCATTCAGCTTT+TGG | - | chr3_3:85913229-85913248 | Msa0480610:CDS | 60.0% |
| ATGGTGCTCCTGGCTTCCTC+AGG | + | chr3_3:85913326-85913345 | None:intergenic | 60.0% | |
| GGTGCCCACCAACCAAGTGA+AGG | - | chr3_3:85914450-85914469 | Msa0480610:CDS | 60.0% | |
| GCTGCGGTGGCCATTGCTTC+TGG | - | chr3_3:85912523-85912542 | Msa0480610:intron | 65.0% | |
| GCAGCGTCAAAGGGGGCCAC+TGG | + | chr3_3:85912400-85912419 | None:intergenic | 70.0% | |
| GCCCCCTTTGACGCTGCTGC+AGG | - | chr3_3:85912403-85912422 | Msa0480610:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85909704 | 85914791 | 85909704 | ID=Msa0480610;Name=Msa0480610 |
| chr3_3 | mRNA | 85909704 | 85914791 | 85909704 | ID=Msa0480610-mRNA-1;Parent=Msa0480610;Name=Msa0480610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=285|0.85|0.75|1|1|1|8|446|463 |
| chr3_3 | exon | 85909704 | 85910208 | 85909704 | ID=Msa0480610-mRNA-1:exon:24788;Parent=Msa0480610-mRNA-1 |
| chr3_3 | exon | 85910654 | 85910756 | 85910654 | ID=Msa0480610-mRNA-1:exon:24787;Parent=Msa0480610-mRNA-1 |
| chr3_3 | exon | 85911095 | 85911310 | 85911095 | ID=Msa0480610-mRNA-1:exon:24786;Parent=Msa0480610-mRNA-1 |
| chr3_3 | exon | 85911410 | 85911643 | 85911410 | ID=Msa0480610-mRNA-1:exon:24785;Parent=Msa0480610-mRNA-1 |
| chr3_3 | exon | 85911907 | 85912221 | 85911907 | ID=Msa0480610-mRNA-1:exon:24784;Parent=Msa0480610-mRNA-1 |
| chr3_3 | exon | 85913224 | 85913392 | 85913224 | ID=Msa0480610-mRNA-1:exon:24783;Parent=Msa0480610-mRNA-1 |
| chr3_3 | exon | 85913483 | 85913627 | 85913483 | ID=Msa0480610-mRNA-1:exon:24782;Parent=Msa0480610-mRNA-1 |
| chr3_3 | exon | 85914356 | 85914791 | 85914356 | ID=Msa0480610-mRNA-1:exon:24781;Parent=Msa0480610-mRNA-1 |
| chr3_3 | five_prime_UTR | 85914507 | 85914791 | 85914507 | ID=Msa0480610-mRNA-1:five_prime_utr;Parent=Msa0480610-mRNA-1 |
| chr3_3 | CDS | 85914356 | 85914506 | 85914356 | ID=Msa0480610-mRNA-1:cds;Parent=Msa0480610-mRNA-1 |
| chr3_3 | CDS | 85913483 | 85913627 | 85913483 | ID=Msa0480610-mRNA-1:cds;Parent=Msa0480610-mRNA-1 |
| chr3_3 | CDS | 85913224 | 85913392 | 85913224 | ID=Msa0480610-mRNA-1:cds;Parent=Msa0480610-mRNA-1 |
| chr3_3 | CDS | 85911907 | 85912221 | 85911907 | ID=Msa0480610-mRNA-1:cds;Parent=Msa0480610-mRNA-1 |
| chr3_3 | CDS | 85911410 | 85911643 | 85911410 | ID=Msa0480610-mRNA-1:cds;Parent=Msa0480610-mRNA-1 |
| chr3_3 | CDS | 85911095 | 85911310 | 85911095 | ID=Msa0480610-mRNA-1:cds;Parent=Msa0480610-mRNA-1 |
| chr3_3 | CDS | 85910654 | 85910756 | 85910654 | ID=Msa0480610-mRNA-1:cds;Parent=Msa0480610-mRNA-1 |
| chr3_3 | CDS | 85910150 | 85910208 | 85910150 | ID=Msa0480610-mRNA-1:cds;Parent=Msa0480610-mRNA-1 |
| chr3_3 | three_prime_UTR | 85909704 | 85910149 | 85909704 | ID=Msa0480610-mRNA-1:three_prime_utr;Parent=Msa0480610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
