AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279850 MtrunA17_Chr2g0293551 98.616 289 4 0 1 289 1 289 0.0 591
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279850 AT1G30630.1 74.740 289 73 0 1 289 4 292 2.14e-169 471
Msa0279850 AT2G34840.1 75.347 288 71 0 2 289 6 293 2.21e-169 471
Msa0279850 AT2G34840.2 75.701 214 52 0 76 289 1 214 1.31e-125 357

Find 73 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGATTTGCCAGTGTTTC+TGG 0.104502 2_3:+14076083 None:intergenic
CACATTTACCCAATTGATTA+TGG 0.124696 2_3:+14074493 None:intergenic
ATGAATATCAGCAATTGTTT+TGG 0.246593 2_3:-14074244 None:intergenic
CAATTGGGTAAATGTGTTAT+AGG 0.258834 2_3:-14074486 Msa0279850:three_prime_UTR
TGCAAATGCTTGGCTTGATT+TGG 0.285359 2_3:-14077424 Msa0279850:CDS
TGATGAAGCTGAGACTCTTT+TGG 0.330291 2_3:-14076429 Msa0279850:CDS
CCTTATCATGGCTATTGTAT+TGG 0.338317 2_3:-14074520 Msa0279850:three_prime_UTR
AACCATCTTCTAAATCATTC+AGG 0.343553 2_3:-14076037 Msa0279850:intron
ACATTTACCCAATTGATTAT+GGG 0.350179 2_3:+14074494 None:intergenic
ATTGGTTTCCCATAATCAAT+TGG 0.366163 2_3:-14074502 Msa0279850:three_prime_UTR
GTAGCATTGTTCCCAATTGC+AGG 0.373136 2_3:+14077941 None:intergenic
GCTACGTTGAGGCTTGTTGC+TGG 0.380071 2_3:-14077923 Msa0279850:CDS
GGTGTCGCCATTGATGGATT+TGG 0.383717 2_3:+14078321 None:intergenic
TGGCTTGCAGATCCTGCAAT+TGG 0.388117 2_3:-14077953 Msa0279850:CDS
GATATCTCTCAGACAAATCT+TGG 0.389822 2_3:+14076510 None:intergenic
TACCTGAATGATTTAGAAGA+TGG 0.403328 2_3:+14076035 None:intergenic
AGGAGCAGAATCGTTGATTT+CGG 0.403329 2_3:+14078137 None:intergenic
GGAAGATCAAATGCGCCTCT+TGG 0.403390 2_3:+14076531 None:intergenic
GTTGTATGCTGTCTTCATCT+TGG 0.408937 2_3:-14076062 Msa0279850:CDS
CTCTTGACCAGTACATGATC+TGG 0.409709 2_3:+14074657 None:intergenic
GGCTGTTTGCTGCATGCAAA+TGG 0.409788 2_3:-14076459 Msa0279850:CDS
GATATTATTCATGATTTGAA+TGG 0.413253 2_3:-14074571 Msa0279850:three_prime_UTR
TGATCTGGTGTCGCCATTGA+TGG 0.429633 2_3:+14078315 None:intergenic
ATAGAGAGCGAGCAATTTAA+CGG 0.433280 2_3:+14078101 None:intergenic
TCTACTAGTTTGCTCTTGAA+TGG 0.434996 2_3:-14076485 Msa0279850:CDS
TTGGTTTCCCATAATCAATT+GGG 0.441261 2_3:-14074501 Msa0279850:three_prime_UTR
ATTGTATAAAAGCAAAATTA+CGG 0.441720 2_3:-14074340 Msa0279850:three_prime_UTR
CGCTGCTGTTGATTGCAGCT+TGG 0.447662 2_3:+14078253 None:intergenic
TTACTCAGCTTGCAAATGCT+TGG 0.460646 2_3:-14077434 Msa0279850:CDS
TGAAATTGTAACCTTTGAAT+CGG 0.463883 2_3:+14078068 None:intergenic
TATGTCGTCGGGAGAGAGGT+TGG 0.471135 2_3:+14078224 None:intergenic
GGCTTGCAGATCCTGCAATT+GGG 0.471416 2_3:-14077952 Msa0279850:CDS
TATCGTTGCTACATCGCTCT+TGG 0.471667 2_3:-14078180 Msa0279850:CDS
CCAATACAATAGCCATGATA+AGG 0.478627 2_3:+14074520 None:intergenic
CAATCTGTTTCGTGAGCTCA+TGG 0.482245 2_3:-14074597 Msa0279850:exon
ATGAAGAATTTGTGTTGTGC+TGG 0.484494 2_3:+14078359 None:intergenic
TGTGATTTGTGCAGGATGCT+AGG 0.494756 2_3:-14076109 Msa0279850:intron
CTACGTTGAGGCTTGTTGCT+GGG 0.494907 2_3:-14077922 Msa0279850:CDS
CGGAGGTTGAAGAGGTGATC+TGG 0.496215 2_3:+14078300 None:intergenic
CTGGGTGTGAAAGTTTCAGC+TGG 0.516866 2_3:+14074676 None:intergenic
GTCGCGTTCGATTATGTCGT+CGG 0.519121 2_3:+14078212 None:intergenic
TGCTTGGCTTGATTTGGCTG+TGG 0.525363 2_3:-14077418 Msa0279850:intron
AGTTGTTGCGGAGGTTGAAG+AGG 0.528845 2_3:+14078292 None:intergenic
GAAATTGTAACCTTTGAATC+GGG 0.529238 2_3:+14078069 None:intergenic
TTTCTCATCACCCGATTCAA+AGG 0.531346 2_3:-14078079 Msa0279850:intron
TCTAGATCCAAATCCATCAA+TGG 0.539293 2_3:-14078328 Msa0279850:exon
TCGCGTTCGATTATGTCGTC+GGG 0.546258 2_3:+14078213 None:intergenic
CTCCGCAACAACTTCTACCT+CGG 0.548277 2_3:-14078282 Msa0279850:CDS
CGATTATGTCGTCGGGAGAG+AGG 0.551111 2_3:+14078220 None:intergenic
CGATCGCGAGTATTAAAGAA+TGG 0.554403 2_3:-14077973 Msa0279850:CDS
GTGATTTGTGCAGGATGCTA+GGG 0.562390 2_3:-14076108 Msa0279850:intron
TAGTTTGCTCTTGAATGGCA+AGG 0.567959 2_3:-14076480 Msa0279850:CDS
TCTTGACCAGTACATGATCT+GGG 0.583999 2_3:+14074658 None:intergenic
CCATCACAAATCAAAACACT+CGG 0.584652 2_3:-14078409 Msa0279850:five_prime_UTR
TGCTAGGGATCCAGAAACAC+TGG 0.586587 2_3:-14076093 Msa0279850:CDS
ATTATGCTGAGAGACAGCTT+AGG 0.588117 2_3:-14077488 Msa0279850:CDS
CAGATCATGTACTGGTCAAG+AGG 0.589094 2_3:-14074656 Msa0279850:CDS
AAATCTTTATTAAGATGCAT+AGG 0.590426 2_3:-14077515 Msa0279850:CDS
TTCACACCCAGATCATGTAC+TGG 0.591368 2_3:-14074664 Msa0279850:CDS
GCTGTTTGCTGCATGCAAAT+GGG 0.591850 2_3:-14076458 Msa0279850:CDS
CGAGGTAGAAGTTGTTGCGG+AGG 0.594425 2_3:+14078283 None:intergenic
TACTAATGCTGGTGGAACCA+TGG 0.596370 2_3:-14077855 Msa0279850:CDS
GCGTTGAAGTATACTAATGC+TGG 0.597020 2_3:-14077866 Msa0279850:CDS
CACCGAGGTAGAAGTTGTTG+CGG 0.603080 2_3:+14078280 None:intergenic
GCATGAACAGGATTTCAATG+AGG 0.619909 2_3:-14077888 Msa0279850:CDS
TTTGGTGGAAGCACTCAACA+AGG 0.627745 2_3:-14076411 Msa0279850:intron
TTGAAGTATACTAATGCTGG+TGG 0.633802 2_3:-14077863 Msa0279850:CDS
TTCATGATTTGAATGGTGTG+TGG 0.644264 2_3:-14074564 Msa0279850:three_prime_UTR
AGATCATGTACTGGTCAAGA+GGG 0.649201 2_3:-14074655 Msa0279850:CDS
TTGGGAACAATGCTACGTTG+AGG 0.655531 2_3:-14077934 Msa0279850:CDS
TTAACGGCTTGAAGAGACGT+AGG 0.656056 2_3:+14078117 None:intergenic
TTGCAGCTTGGTATGCACCG+AGG 0.725254 2_3:+14078265 None:intergenic
GGGAGGGGCGAAGATCCAAG+AGG 0.749423 2_3:-14076546 Msa0279850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGATAATAATTTTAAAAAT+TGG - chr2_3:14075395-14075414 Msa0279850:intron 10.0%
!!! TTTTTTTAACTTTTAAATGT+AGG - chr2_3:14075579-14075598 Msa0279850:intron 10.0%
!!! TTTTTTAACTTTTAAATGTA+GGG - chr2_3:14075580-14075599 Msa0279850:intron 10.0%
!! AAAAAATTCAATATAGACAT+AGG - chr2_3:14075611-14075630 Msa0279850:intron 15.0%
!! AAAAATTCAATATAGACATA+GGG - chr2_3:14075612-14075631 Msa0279850:intron 15.0%
!! GATGTATTGAATTTATTAAA+GGG + chr2_3:14075944-14075963 None:intergenic 15.0%
!! TGATGTATTGAATTTATTAA+AGG + chr2_3:14075945-14075964 None:intergenic 15.0%
!! TTCATCAAGTAATAATAATA+AGG + chr2_3:14076031-14076050 None:intergenic 15.0%
!!! TTATCAAACATTAAAAGTTT+TGG + chr2_3:14076416-14076435 None:intergenic 15.0%
!!! TATATATGATAATAGAGTTT+TGG + chr2_3:14077422-14077441 None:intergenic 15.0%
!!! TTGCTTTTATACAATATAAT+AGG + chr2_3:14078354-14078373 None:intergenic 15.0%
!! ATTGTATAAAAGCAAAATTA+CGG - chr2_3:14078359-14078378 Msa0279850:five_prime_UTR 15.0%
!!! TTTTATTGTGAAATGGATTT+GGG + chr2_3:14074248-14074267 None:intergenic 20.0%
!!! TTTATCGTTATTGTTATTGT+AGG - chr2_3:14074697-14074716 Msa0279850:intron 20.0%
!! TTAAAAATATCTCTGTGATT+TGG - chr2_3:14074982-14075001 Msa0279850:intron 20.0%
!!! AGTGTAAAACTGTTTTTTTA+CGG - chr2_3:14075032-14075051 Msa0279850:intron 20.0%
!! AAATCTTTATTAAGATGCAT+AGG - chr2_3:14075184-14075203 Msa0279850:intron 20.0%
!!! CATCAACATTTTCAATAATA+AGG + chr2_3:14075335-14075354 None:intergenic 20.0%
!!! TTATTGAAAATGTTGATGAA+AGG - chr2_3:14075337-14075356 Msa0279850:intron 20.0%
!!! TATTGAAAATGTTGATGAAA+GGG - chr2_3:14075338-14075357 Msa0279850:intron 20.0%
!! TGCTATGTAGATTATTATTA+GGG - chr2_3:14075494-14075513 Msa0279850:intron 20.0%
!! AAAATTCAATATAGACATAG+GGG - chr2_3:14075613-14075632 Msa0279850:intron 20.0%
!!! TGCAAGTAAATAAGTTTTTA+TGG - chr2_3:14075679-14075698 Msa0279850:intron 20.0%
!! GCTTATGAATAATACATAAA+AGG - chr2_3:14075770-14075789 Msa0279850:intron 20.0%
!!! TTAAACTTTTTAGATGATCA+TGG + chr2_3:14075854-14075873 None:intergenic 20.0%
!!! CAATGCAAAATTTCTATTTT+TGG - chr2_3:14075895-14075914 Msa0279850:intron 20.0%
!! AATATCAAACAACTGAAAAT+TGG + chr2_3:14076446-14076465 None:intergenic 20.0%
!!! GCTCTTTAATTTAAATCTTT+AGG - chr2_3:14076494-14076513 Msa0279850:CDS 20.0%
!! AATCACAAGATAAAAAAAGA+GGG + chr2_3:14076719-14076738 None:intergenic 20.0%
!! AAATCACAAGATAAAAAAAG+AGG + chr2_3:14076720-14076739 None:intergenic 20.0%
!!! TCTATAATTTTAATACCTGT+GGG - chr2_3:14076851-14076870 Msa0279850:intron 20.0%
!!! TGCATATCATTAAAATCTTT+TGG - chr2_3:14076996-14077015 Msa0279850:intron 20.0%
!!! GCATATCATTAAAATCTTTT+GGG - chr2_3:14076997-14077016 Msa0279850:intron 20.0%
!! ATTAAACCTAAAATGTTTCA+TGG - chr2_3:14077088-14077107 Msa0279850:intron 20.0%
!! AACATCATTTGTAAGAATAA+CGG - chr2_3:14077295-14077314 Msa0279850:intron 20.0%
!! ATATCTGATTATGTATTTCT+TGG - chr2_3:14077780-14077799 Msa0279850:intron 20.0%
!! GATATTATTCATGATTTGAA+TGG - chr2_3:14078128-14078147 Msa0279850:CDS 20.0%
!!! TGTTTCCATTATATTTTTAC+TGG - chr2_3:14078314-14078333 Msa0279850:exon 20.0%
!!! CTTTTCCAGTAAAAATATAA+TGG + chr2_3:14078322-14078341 None:intergenic 20.0%
!!! CTTTTATTGTGAAATGGATT+TGG + chr2_3:14074249-14074268 None:intergenic 25.0%
!!! TTTTGAAGAGAAAGAGAAAT+GGG + chr2_3:14074320-14074339 None:intergenic 25.0%
! TGAAATTGTAACCTTTGAAT+CGG + chr2_3:14074634-14074653 None:intergenic 25.0%
!!! TTTTTTTTCTTACAGTTCCA+TGG + chr2_3:14074864-14074883 None:intergenic 25.0%
!!! ATGTTGGTTTTGTGTTTTTT+AGG - chr2_3:14075145-14075164 Msa0279850:intron 25.0%
! AAAAATTGGAAGTGATTGAA+TGG - chr2_3:14075409-14075428 Msa0279850:intron 25.0%
! GTGCTATGTAGATTATTATT+AGG - chr2_3:14075493-14075512 Msa0279850:intron 25.0%
!!! CATTAGAAAACTTGTTATCA+GGG + chr2_3:14075520-14075539 None:intergenic 25.0%
!!! TCATTAGAAAACTTGTTATC+AGG + chr2_3:14075521-14075540 None:intergenic 25.0%
!! AAGTTTTTATGGCAATTCAT+AGG - chr2_3:14075690-14075709 Msa0279850:intron 25.0%
!! AGGTTTGAAAATAGATGTTT+TGG - chr2_3:14076086-14076105 Msa0279850:CDS 25.0%
!!! TTGAAAATAGATGTTTTGGT+TGG - chr2_3:14076090-14076109 Msa0279850:CDS 25.0%
! AATGAAGATTGAAATTCTGT+TGG - chr2_3:14076472-14076491 Msa0279850:CDS 25.0%
!!! ATTATTGGTTTTGTTGGAAA+TGG - chr2_3:14076545-14076564 Msa0279850:CDS 25.0%
! ATCACAAGATAAAAAAAGAG+GGG + chr2_3:14076718-14076737 None:intergenic 25.0%
!!! CTCTATAATTTTAATACCTG+TGG - chr2_3:14076850-14076869 Msa0279850:intron 25.0%
! GCTCTTTCAATTAAAAACTT+TGG - chr2_3:14076948-14076967 Msa0279850:intron 25.0%
!!! AAAATCTTTTGGGTTTAGAA+TGG - chr2_3:14077007-14077026 Msa0279850:intron 25.0%
!! TCATTTTACAGTTTCACTAT+TGG + chr2_3:14077394-14077413 None:intergenic 25.0%
!!! CAAGTATTTTTGATTGCTAA+GGG + chr2_3:14077594-14077613 None:intergenic 25.0%
!!! TCAAGTATTTTTGATTGCTA+AGG + chr2_3:14077595-14077614 None:intergenic 25.0%
! ATTTACAGCGTAAATTAAAG+AGG + chr2_3:14077653-14077672 None:intergenic 25.0%
! ATTTACAAGTTACTCACTAA+TGG + chr2_3:14077987-14078006 None:intergenic 25.0%
! ACATTTACCCAATTGATTAT+GGG + chr2_3:14078208-14078227 None:intergenic 25.0%
!!! CTGATATTCATGTTTTTACA+TGG + chr2_3:14078446-14078465 None:intergenic 25.0%
!!! GTTTTGAAGAGAAAGAGAAA+TGG + chr2_3:14074321-14074340 None:intergenic 30.0%
GAAATTGTAACCTTTGAATC+GGG + chr2_3:14074633-14074652 None:intergenic 30.0%
! GATTATCTTTTTGCATGAAC+AGG - chr2_3:14074799-14074818 Msa0279850:intron 30.0%
! TCAGATTGATGGTTTCTTAT+TGG + chr2_3:14074933-14074952 None:intergenic 30.0%
GATATGACATATCAGATTGA+TGG + chr2_3:14074944-14074963 None:intergenic 30.0%
! AAAATATCTCTGTGATTTGG+TGG - chr2_3:14074985-14075004 Msa0279850:intron 30.0%
!!! AAACTGTTTTTTTACGGTGT+TGG - chr2_3:14075038-14075057 Msa0279850:intron 30.0%
!! TTGATAATGATGATGAGAAG+AGG - chr2_3:14075098-14075117 Msa0279850:intron 30.0%
!! CATGCTTTTAATTCAAGTGT+CGG - chr2_3:14075471-14075490 Msa0279850:intron 30.0%
! TTTTCATAAACTACCTTGAC+AGG - chr2_3:14075748-14075767 Msa0279850:intron 30.0%
TATTATTCATAAGCCTGTCA+AGG + chr2_3:14075764-14075783 None:intergenic 30.0%
! TGGAATGTGATGTGTTTTAT+TGG - chr2_3:14076120-14076139 Msa0279850:intron 30.0%
!!! TGTTTTATTGGTGTTGGATT+AGG - chr2_3:14076132-14076151 Msa0279850:intron 30.0%
!!! GTTTTATTGGTGTTGGATTA+GGG - chr2_3:14076133-14076152 Msa0279850:intron 30.0%
ACTCATCTAAATGAGATAAC+AGG + chr2_3:14076381-14076400 None:intergenic 30.0%
CAAACAACTGAAAATTGGAA+AGG + chr2_3:14076441-14076460 None:intergenic 30.0%
TTTGCTAAAGTAGAGTTTGA+TGG - chr2_3:14076518-14076537 Msa0279850:CDS 30.0%
TTGCTAAAGTAGAGTTTGAT+GGG - chr2_3:14076519-14076538 Msa0279850:CDS 30.0%
AACCATCTTCTAAATCATTC+AGG - chr2_3:14076662-14076681 Msa0279850:intron 30.0%
TACCTGAATGATTTAGAAGA+TGG + chr2_3:14076667-14076686 None:intergenic 30.0%
TCACAAGATAAAAAAAGAGG+GGG + chr2_3:14076717-14076736 None:intergenic 30.0%
ATAGATGTAGTTTCCTGTAT+TGG - chr2_3:14076776-14076795 Msa0279850:intron 30.0%
AAGTAACAAAAAGATTCCAC+CGG + chr2_3:14076802-14076821 None:intergenic 30.0%
! ACTGCTATTGTTTTCCATTT+GGG + chr2_3:14076903-14076922 None:intergenic 30.0%
! AACTGCTATTGTTTTCCATT+TGG + chr2_3:14076904-14076923 None:intergenic 30.0%
! AGTGATCCATGAAACATTTT+AGG + chr2_3:14077097-14077116 None:intergenic 30.0%
ACTAGGAAATATTAGAAGCA+GGG + chr2_3:14077334-14077353 None:intergenic 30.0%
TACTAGGAAATATTAGAAGC+AGG + chr2_3:14077335-14077354 None:intergenic 30.0%
TTCTGTAGATACTTACTACT+AGG + chr2_3:14077351-14077370 None:intergenic 30.0%
TCACTATTGGAATTGTACAA+TGG + chr2_3:14077381-14077400 None:intergenic 30.0%
AGATATATGTTTAGCCACTT+TGG - chr2_3:14077499-14077518 Msa0279850:CDS 30.0%
ATCATTAAACAGAACCAAAG+TGG + chr2_3:14077516-14077535 None:intergenic 30.0%
CTAATCACATATCTTCTATG+TGG - chr2_3:14077722-14077741 Msa0279850:intron 30.0%
AAGATTCAACCAATAAGACA+CGG + chr2_3:14077758-14077777 None:intergenic 30.0%
ACTAGCATTATATACAAACC+AGG - chr2_3:14077924-14077943 Msa0279850:CDS 30.0%
ATAAGGTGTAAAAATTGCAC+GGG + chr2_3:14078165-14078184 None:intergenic 30.0%
GATAAGGTGTAAAAATTGCA+CGG + chr2_3:14078166-14078185 None:intergenic 30.0%
! GCAATTTTTACACCTTATCA+TGG - chr2_3:14078167-14078186 Msa0279850:CDS 30.0%
! ATTGGTTTCCCATAATCAAT+TGG - chr2_3:14078197-14078216 Msa0279850:CDS 30.0%
TTGGTTTCCCATAATCAATT+GGG - chr2_3:14078198-14078217 Msa0279850:CDS 30.0%
CACATTTACCCAATTGATTA+TGG + chr2_3:14078209-14078228 None:intergenic 30.0%
CAATTGGGTAAATGTGTTAT+AGG - chr2_3:14078213-14078232 Msa0279850:CDS 30.0%
!!! AGTGTTTTGATTTGTGATGG+TGG + chr2_3:14074290-14074309 None:intergenic 35.0%
CCATCACAAATCAAAACACT+CGG - chr2_3:14074290-14074309 Msa0279850:three_prime_UTR 35.0%
ATGAAGAATTTGTGTTGTGC+TGG + chr2_3:14074343-14074362 None:intergenic 35.0%
TCTAGATCCAAATCCATCAA+TGG - chr2_3:14074371-14074390 Msa0279850:three_prime_UTR 35.0%
ATAGAGAGCGAGCAATTTAA+CGG + chr2_3:14074601-14074620 None:intergenic 35.0%
TTGAAGTATACTAATGCTGG+TGG - chr2_3:14074836-14074855 Msa0279850:intron 35.0%
GTGGAATACTAGATGATCAT+TGG - chr2_3:14075004-14075023 Msa0279850:intron 35.0%
ATTTGGAAGTGATTGGATGT+TGG - chr2_3:14075129-14075148 Msa0279850:intron 35.0%
TGTTGGACACTAATATGTGT+CGG - chr2_3:14075439-14075458 Msa0279850:intron 35.0%
ATATAGACATAGGGGTTGTT+TGG - chr2_3:14075621-14075640 Msa0279850:intron 35.0%
! TAGATGATCATGGTTCTGTT+TGG + chr2_3:14075844-14075863 None:intergenic 35.0%
TTATTCCTTGACATGTACCT+AGG - chr2_3:14075989-14076008 Msa0279850:intron 35.0%
!!! ATGTTTTGGTTGGTTGAGTT+TGG - chr2_3:14076100-14076119 Msa0279850:intron 35.0%
!! GTGATGTGTTTTATTGGTGT+TGG - chr2_3:14076126-14076145 Msa0279850:intron 35.0%
GATATCTCTCAGACAAATCT+TGG + chr2_3:14076192-14076211 None:intergenic 35.0%
!! TCTACTAGTTTGCTCTTGAA+TGG - chr2_3:14076214-14076233 Msa0279850:intron 35.0%
CTCATTTAGATGAGTGTTTG+TGG - chr2_3:14076386-14076405 Msa0279850:intron 35.0%
TGCTAAAGTAGAGTTTGATG+GGG - chr2_3:14076520-14076539 Msa0279850:CDS 35.0%
GAGTTTGATGGGGTAATTAT+TGG - chr2_3:14076530-14076549 Msa0279850:CDS 35.0%
!!! GGGGTAATTATTGGTTTTGT+TGG - chr2_3:14076539-14076558 Msa0279850:CDS 35.0%
TAAATCATTCAGGTAAGCTC+TGG - chr2_3:14076672-14076691 Msa0279850:intron 35.0%
CATATACAAATATGACCCAC+AGG + chr2_3:14076869-14076888 None:intergenic 35.0%
CTGTGGGTCATATTTGTATA+TGG - chr2_3:14076867-14076886 Msa0279850:intron 35.0%
! CTGCTATTGTTTTCCATTTG+GGG + chr2_3:14076902-14076921 None:intergenic 35.0%
!!! TAGTTTTGTGACCTACTTGA+AGG + chr2_3:14077069-14077088 None:intergenic 35.0%
GTTTCATGGATCACTTATGT+TGG - chr2_3:14077102-14077121 Msa0279850:intron 35.0%
TTGGAAACCAAATTGCATTG+CGG - chr2_3:14077121-14077140 Msa0279850:intron 35.0%
CACACAAATGAATCATGTCT+GGG + chr2_3:14077166-14077185 None:intergenic 35.0%
ACACACAAATGAATCATGTC+TGG + chr2_3:14077167-14077186 None:intergenic 35.0%
! GTGTCTTATTGGTTGAATCT+TGG - chr2_3:14077757-14077776 Msa0279850:intron 35.0%
GTTCACACACAAATAACATG+TGG + chr2_3:14077828-14077847 None:intergenic 35.0%
TTCATGATTTGAATGGTGTG+TGG - chr2_3:14078135-14078154 Msa0279850:CDS 35.0%
CCAATACAATAGCCATGATA+AGG + chr2_3:14078182-14078201 None:intergenic 35.0%
CCTTATCATGGCTATTGTAT+TGG - chr2_3:14078179-14078198 Msa0279850:CDS 35.0%
! CGTGGGCTTTTATTGTGAAA+TGG + chr2_3:14074255-14074274 None:intergenic 40.0%
!!! GTTTTGATTTGTGATGGTGG+TGG + chr2_3:14074287-14074306 None:intergenic 40.0%
!!! CCGAGTGTTTTGATTTGTGA+TGG + chr2_3:14074293-14074312 None:intergenic 40.0%
!! AGGAGCAGAATCGTTGATTT+CGG + chr2_3:14074565-14074584 None:intergenic 40.0%
TTTCTCATCACCCGATTCAA+AGG - chr2_3:14074620-14074639 Msa0279850:CDS 40.0%
CGATCGCGAGTATTAAAGAA+TGG - chr2_3:14074726-14074745 Msa0279850:intron 40.0%
GCATGAACAGGATTTCAATG+AGG - chr2_3:14074811-14074830 Msa0279850:intron 40.0%
GCGTTGAAGTATACTAATGC+TGG - chr2_3:14074833-14074852 Msa0279850:intron 40.0%
!!! CTGTTTTTTTACGGTGTTGG+TGG - chr2_3:14075041-14075060 Msa0279850:intron 40.0%
TGTGAGGATTTGGAAGTGAT+TGG - chr2_3:14075122-14075141 Msa0279850:intron 40.0%
ATTATGCTGAGAGACAGCTT+AGG - chr2_3:14075211-14075230 Msa0279850:intron 40.0%
TTACTCAGCTTGCAAATGCT+TGG - chr2_3:14075265-14075284 Msa0279850:intron 40.0%
! TGCAAATGCTTGGCTTGATT+TGG - chr2_3:14075275-14075294 Msa0279850:intron 40.0%
GATTGAATGGATCAGCATGT+TGG - chr2_3:14075422-14075441 Msa0279850:intron 40.0%
GTTGGACACTAATATGTGTC+GGG - chr2_3:14075440-14075459 Msa0279850:intron 40.0%
! GATCATGGTTCTGTTTGGAT+TGG + chr2_3:14075839-14075858 None:intergenic 40.0%
GGTCTAGCTAACGTATGTTA+AGG + chr2_3:14075923-14075942 None:intergenic 40.0%
!! TTATTGGTGTTGGATTAGGG+AGG - chr2_3:14076136-14076155 Msa0279850:intron 40.0%
!! TATTGGTGTTGGATTAGGGA+GGG - chr2_3:14076137-14076156 Msa0279850:intron 40.0%
!! TAGTTTGCTCTTGAATGGCA+AGG - chr2_3:14076219-14076238 Msa0279850:intron 40.0%
! TGATGAAGCTGAGACTCTTT+TGG - chr2_3:14076270-14076289 Msa0279850:intron 40.0%
! AAACTCGTTGTGATTTGTGC+AGG - chr2_3:14076582-14076601 Msa0279850:intron 40.0%
ACAAGATTTGCCAGTGTTTC+TGG + chr2_3:14076619-14076638 None:intergenic 40.0%
GTTGTATGCTGTCTTCATCT+TGG - chr2_3:14076637-14076656 Msa0279850:intron 40.0%
! ATGTAGTTTCCTGTATTGGC+CGG - chr2_3:14076780-14076799 Msa0279850:intron 40.0%
ATGGAATTTGTCTCCCCAAA+TGG - chr2_3:14076886-14076905 Msa0279850:intron 40.0%
AGAATAACGGTGCATAACTC+AGG - chr2_3:14077308-14077327 Msa0279850:intron 40.0%
AAATATGAACCAGACTGTGC+TGG - chr2_3:14077549-14077568 Msa0279850:intron 40.0%
ACCAATAAGACACGGAAGAA+AGG + chr2_3:14077750-14077769 None:intergenic 40.0%
GCATAAACTAAGCATAGTCC+TGG + chr2_3:14077945-14077964 None:intergenic 40.0%
TCTTGACCAGTACATGATCT+GGG + chr2_3:14078044-14078063 None:intergenic 40.0%
! AGATCATGTACTGGTCAAGA+GGG - chr2_3:14078044-14078063 Msa0279850:intron 40.0%
!! GGTGGTGGTGAAATTTTCGT+GGG + chr2_3:14074272-14074291 None:intergenic 45.0%
!!! TGGTGGTGGTGAAATTTTCG+TGG + chr2_3:14074273-14074292 None:intergenic 45.0%
TATCGTTGCTACATCGCTCT+TGG - chr2_3:14074519-14074538 Msa0279850:three_prime_UTR 45.0%
TTAACGGCTTGAAGAGACGT+AGG + chr2_3:14074585-14074604 None:intergenic 45.0%
GTAGCATTGTTCCCAATTGC+AGG + chr2_3:14074761-14074780 None:intergenic 45.0%
TTGGGAACAATGCTACGTTG+AGG - chr2_3:14074765-14074784 Msa0279850:intron 45.0%
TACTAATGCTGGTGGAACCA+TGG - chr2_3:14074844-14074863 Msa0279850:intron 45.0%
GATGATGAGAAGAGGATGTG+AGG - chr2_3:14075106-14075125 Msa0279850:intron 45.0%
GAGAAGAGGATGTGAGGATT+TGG - chr2_3:14075112-14075131 Msa0279850:intron 45.0%
CACTAATATGTGTCGGGACT+CGG - chr2_3:14075446-14075465 Msa0279850:intron 45.0%
GACATAGGGGTTGTTTGGAT+TGG - chr2_3:14075626-14075645 Msa0279850:intron 45.0%
AAGTGCCTAGGTACATGTCA+AGG + chr2_3:14075997-14076016 None:intergenic 45.0%
GCAAATGCTAACAAGTGCCT+AGG + chr2_3:14076009-14076028 None:intergenic 45.0%
!! ATTGGTGTTGGATTAGGGAG+GGG - chr2_3:14076138-14076157 Msa0279850:intron 45.0%
! GCTGTTTGCTGCATGCAAAT+GGG - chr2_3:14076241-14076260 Msa0279850:intron 45.0%
! TGAAGCTGAGACTCTTTTGG+TGG - chr2_3:14076273-14076292 Msa0279850:intron 45.0%
!! TTTGGTGGAAGCACTCAACA+AGG - chr2_3:14076288-14076307 Msa0279850:intron 45.0%
! TGTGATTTGTGCAGGATGCT+AGG - chr2_3:14076590-14076609 Msa0279850:intron 45.0%
! GTGATTTGTGCAGGATGCTA+GGG - chr2_3:14076591-14076610 Msa0279850:intron 45.0%
! AAGGACCCAACTCTAGAAGA+GGG + chr2_3:14077050-14077069 None:intergenic 45.0%
TAGAGTTGGGTCCTTCAAGT+AGG - chr2_3:14077055-14077074 Msa0279850:intron 45.0%
CTCAGAACCGCAATGCAATT+TGG + chr2_3:14077131-14077150 None:intergenic 45.0%
GCCTTTCTTCCGTGTCTTAT+TGG - chr2_3:14077746-14077765 Msa0279850:intron 45.0%
TTCACACCCAGATCATGTAC+TGG - chr2_3:14078035-14078054 Msa0279850:intron 45.0%
CTCTTGACCAGTACATGATC+TGG + chr2_3:14078045-14078064 None:intergenic 45.0%
! CAGATCATGTACTGGTCAAG+AGG - chr2_3:14078043-14078062 Msa0279850:intron 45.0%
CAATCTGTTTCGTGAGCTCA+TGG - chr2_3:14078102-14078121 Msa0279850:CDS 45.0%
!!! TTTTATATAAAAAGAAAAAA+AGG - chr2_3:14076066-14076085 Msa0279850:CDS 5.0%
!! GGTGTCGCCATTGATGGATT+TGG + chr2_3:14074381-14074400 None:intergenic 50.0%
!! TGATCTGGTGTCGCCATTGA+TGG + chr2_3:14074387-14074406 None:intergenic 50.0%
AGTTGTTGCGGAGGTTGAAG+AGG + chr2_3:14074410-14074429 None:intergenic 50.0%
CTCCGCAACAACTTCTACCT+CGG - chr2_3:14074417-14074436 Msa0279850:three_prime_UTR 50.0%
CACCGAGGTAGAAGTTGTTG+CGG + chr2_3:14074422-14074441 None:intergenic 50.0%
TCGCGTTCGATTATGTCGTC+GGG + chr2_3:14074489-14074508 None:intergenic 50.0%
GTCGCGTTCGATTATGTCGT+CGG + chr2_3:14074490-14074509 None:intergenic 50.0%
! TGGCTTGCAGATCCTGCAAT+TGG - chr2_3:14074746-14074765 Msa0279850:intron 50.0%
GGCTTGCAGATCCTGCAATT+GGG - chr2_3:14074747-14074766 Msa0279850:intron 50.0%
!! CTACGTTGAGGCTTGTTGCT+GGG - chr2_3:14074777-14074796 Msa0279850:intron 50.0%
!! TGCTTGGCTTGATTTGGCTG+TGG - chr2_3:14075281-14075300 Msa0279850:intron 50.0%
GGAAGATCAAATGCGCCTCT+TGG + chr2_3:14076171-14076190 None:intergenic 50.0%
! GGCTGTTTGCTGCATGCAAA+TGG - chr2_3:14076240-14076259 Msa0279850:intron 50.0%
TGCTAGGGATCCAGAAACAC+TGG - chr2_3:14076606-14076625 Msa0279850:intron 50.0%
! TAGTTTCCTGTATTGGCCGG+TGG - chr2_3:14076783-14076802 Msa0279850:intron 50.0%
AAGATTCCACCGGCCAATAC+AGG + chr2_3:14076792-14076811 None:intergenic 50.0%
!! TCCACACCCTCTTCTAGAGT+TGG - chr2_3:14077041-14077060 Msa0279850:intron 50.0%
!! CCACACCCTCTTCTAGAGTT+GGG - chr2_3:14077042-14077061 Msa0279850:intron 50.0%
! GAAGGACCCAACTCTAGAAG+AGG + chr2_3:14077051-14077070 None:intergenic 50.0%
TGAACCAGACTGTGCTGGAA+AGG - chr2_3:14077554-14077573 Msa0279850:intron 50.0%
TGTTCCTTTCCAGCACAGTC+TGG + chr2_3:14077561-14077580 None:intergenic 50.0%
CTGGGTGTGAAAGTTTCAGC+TGG + chr2_3:14078026-14078045 None:intergenic 50.0%
CGGAGGTTGAAGAGGTGATC+TGG + chr2_3:14074402-14074421 None:intergenic 55.0%
CGAGGTAGAAGTTGTTGCGG+AGG + chr2_3:14074419-14074438 None:intergenic 55.0%
TTGCAGCTTGGTATGCACCG+AGG + chr2_3:14074437-14074456 None:intergenic 55.0%
! CGCTGCTGTTGATTGCAGCT+TGG + chr2_3:14074449-14074468 None:intergenic 55.0%
TATGTCGTCGGGAGAGAGGT+TGG + chr2_3:14074478-14074497 None:intergenic 55.0%
CGATTATGTCGTCGGGAGAG+AGG + chr2_3:14074482-14074501 None:intergenic 55.0%
!! GCTACGTTGAGGCTTGTTGC+TGG - chr2_3:14074776-14074795 Msa0279850:intron 55.0%
! CCCAACTCTAGAAGAGGGTG+TGG + chr2_3:14077045-14077064 None:intergenic 55.0%
GGGAGGGGCGAAGATCCAAG+AGG - chr2_3:14076153-14076172 Msa0279850:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 14074245 14078476 14074245 ID=Msa0279850;Name=Msa0279850
chr2_3 mRNA 14074245 14078476 14074245 ID=Msa0279850-mRNA-1;Parent=Msa0279850;Name=Msa0279850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|360|289
chr2_3 exon 14074245 14074698 14074245 ID=Msa0279850-mRNA-1:exon:5942;Parent=Msa0279850-mRNA-1
chr2_3 exon 14076038 14076117 14076038 ID=Msa0279850-mRNA-1:exon:5941;Parent=Msa0279850-mRNA-1
chr2_3 exon 14076412 14076567 14076412 ID=Msa0279850-mRNA-1:exon:5940;Parent=Msa0279850-mRNA-1
chr2_3 exon 14077419 14077554 14077419 ID=Msa0279850-mRNA-1:exon:5939;Parent=Msa0279850-mRNA-1
chr2_3 exon 14077851 14078002 14077851 ID=Msa0279850-mRNA-1:exon:5938;Parent=Msa0279850-mRNA-1
chr2_3 exon 14078080 14078476 14078080 ID=Msa0279850-mRNA-1:exon:5937;Parent=Msa0279850-mRNA-1
chr2_3 five_prime_UTR 14078332 14078476 14078332 ID=Msa0279850-mRNA-1:five_prime_utr;Parent=Msa0279850-mRNA-1
chr2_3 CDS 14078080 14078331 14078080 ID=Msa0279850-mRNA-1:cds;Parent=Msa0279850-mRNA-1
chr2_3 CDS 14077851 14078002 14077851 ID=Msa0279850-mRNA-1:cds;Parent=Msa0279850-mRNA-1
chr2_3 CDS 14077419 14077554 14077419 ID=Msa0279850-mRNA-1:cds;Parent=Msa0279850-mRNA-1
chr2_3 CDS 14076412 14076567 14076412 ID=Msa0279850-mRNA-1:cds;Parent=Msa0279850-mRNA-1
chr2_3 CDS 14076038 14076117 14076038 ID=Msa0279850-mRNA-1:cds;Parent=Msa0279850-mRNA-1
chr2_3 CDS 14074605 14074698 14074605 ID=Msa0279850-mRNA-1:cds;Parent=Msa0279850-mRNA-1
chr2_3 three_prime_UTR 14074245 14074604 14074245 ID=Msa0279850-mRNA-1:three_prime_utr;Parent=Msa0279850-mRNA-1
Gene Sequence

>Msa0279850

ATGGCGACACCAGATCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGTGCATACCAAGCTGCAATCAACAGCAGCGAAGTCTCCAACCTCTCTCCCGACGACATAATCGAACGCGACACTCTCGTTTATCGTTGCTACATCGCTCTTGGTCAGTTACAGTTCGTCATCTCCGAAATCAACGATTCTGCTCCTACGTCTCTTCAAGCCGTTAAATTGCTCGCTCTCTATTTCTCATCACCCGATTCAAAGGAATCTGCGATCGCGAGTATTAAAGAATGGCTTGCAGATCCTGCAATTGGGAACAATGCTACGTTGAGGCTTGTTGCTGGGATTATCTTTTTGCATGAACAGGATTTCAATGAGGCGTTGAAGTATACTAATGCTGGTGGAACCATGGAACTGACTGCTTTGAATGTGCAAATCTTTATTAAGATGCATAGGTCTGATTATGCTGAGAGACAGCTTAGGATTATGCAGCAGATTGATGAAGATCATACTCTTACTCAGCTTGCAAATGCTTGGCTTGATTTGGCTGTGGGAGGGGCGAAGATCCAAGAGGCGCATTTGATCTTCCAAGATTTGTCTGAGAGATATCAGTCTACTAGTTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCAAATGGGTAACTTTGATGAAGCTGAGACTCTTTTGGTGGAAGCACTCAACAAGGATGCTAGGGATCCAGAAACACTGGCAAATCTTGTTGTATGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGCCAGCTGAAACTTTCACACCCAGATCATGTACTGGTCAAGAGGGTATCAGCAGCTGAAGAAAGCTTTGATAGAGCGCTACAATCTGTTTCGTGA

Protein sequence

>Msa0279850

MATPDHLFNLRNNFYLGAYQAAINSSEVSNLSPDDIIERDTLVYRCYIALGQLQFVISEINDSAPTSLQAVKLLALYFSSPDSKESAIASIKEWLADPAIGNNATLRLVAGIIFLHEQDFNEALKYTNAGGTMELTALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAVGGAKIQEAHLIFQDLSERYQSTSLLLNGKAVCCMQMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKSFSQLKLSHPDHVLVKRVSAAEESFDRALQSVS*