Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700970 | XP_003629736.1 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700970 | sp|B9DHQ0|TBA5_ARATH | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700970 | G7LIN7 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 936 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040790 | Msa0700970 | 0.843539 | 1.316753e-58 | -8.615850e-47 |
| Msa0057840 | Msa0700970 | 0.804158 | 2.471080e-49 | -8.615850e-47 |
| Msa0617940 | Msa0700970 | 0.858110 | 1.031815e-62 | -8.615850e-47 |
| Msa0692790 | Msa0700970 | 0.886421 | 3.471355e-72 | -8.615850e-47 |
| Msa0700970 | Msa1104110 | 0.806149 | 9.461981e-50 | -8.615850e-47 |
| Msa0700970 | Msa1123940 | 0.807822 | 4.189360e-50 | -8.615850e-47 |
| Msa0700970 | Msa1145300 | 0.802868 | 4.572731e-49 | -8.615850e-47 |
| Msa0700970 | Msa1147700 | 0.821847 | 3.247165e-53 | -8.615850e-47 |
| Msa0700970 | Msa1383820 | 0.827239 | 1.746011e-54 | -8.615850e-47 |
| Msa0184500 | Msa0700970 | 0.821858 | 3.228850e-53 | -8.615850e-47 |
| Msa0479420 | Msa0700970 | 0.805444 | 1.330936e-49 | -8.615850e-47 |
| Msa0480610 | Msa0700970 | 0.800149 | 1.649966e-48 | -8.615850e-47 |
| Msa0590630 | Msa0700970 | 0.800685 | 1.283652e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700970 | MtrunA17_Chr8g0378821 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 936 |
| Msa0700970 | MtrunA17_Chr7g0253411 | 94.989 | 439 | 22 | 0 | 1 | 439 | 1 | 439 | 0.0 | 857 |
| Msa0700970 | MtrunA17_Chr1g0206881 | 91.111 | 450 | 39 | 1 | 1 | 449 | 1 | 450 | 0.0 | 840 |
| Msa0700970 | MtrunA17_Chr4g0054511 | 92.711 | 439 | 32 | 0 | 1 | 439 | 1 | 439 | 0.0 | 839 |
| Msa0700970 | MtrunA17_Chr3g0140821 | 92.922 | 438 | 31 | 0 | 1 | 438 | 1 | 438 | 0.0 | 838 |
| Msa0700970 | MtrunA17_Chr6g0461281 | 87.333 | 450 | 54 | 2 | 1 | 449 | 1 | 448 | 0.0 | 799 |
| Msa0700970 | MtrunA17_Chr2g0300671 | 71.889 | 434 | 117 | 2 | 1 | 434 | 1 | 429 | 0.0 | 632 |
| Msa0700970 | MtrunA17_Chr2g0300491 | 71.429 | 434 | 119 | 2 | 1 | 434 | 1 | 429 | 0.0 | 632 |
| Msa0700970 | MtrunA17_Chr8g0393021 | 41.425 | 449 | 252 | 3 | 1 | 449 | 1 | 438 | 1.42e-126 | 374 |
| Msa0700970 | MtrunA17_Chr4g0051631 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 1.72e-126 | 374 |
| Msa0700970 | MtrunA17_Chr4g0008401 | 42.396 | 434 | 240 | 2 | 1 | 434 | 1 | 424 | 8.38e-126 | 372 |
| Msa0700970 | MtrunA17_Chr2g0292921 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 8.58e-126 | 372 |
| Msa0700970 | MtrunA17_Chr4g0008361 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 1.44e-125 | 372 |
| Msa0700970 | MtrunA17_Chr3g0142731 | 40.553 | 434 | 250 | 1 | 1 | 434 | 1 | 426 | 6.04e-125 | 370 |
| Msa0700970 | MtrunA17_Chr1g0203181 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 8.55e-125 | 370 |
| Msa0700970 | MtrunA17_Chr7g0255791 | 41.475 | 434 | 244 | 3 | 1 | 434 | 1 | 424 | 1.07e-124 | 369 |
| Msa0700970 | MtrunA17_Chr4g0007371 | 41.514 | 436 | 243 | 3 | 1 | 434 | 1 | 426 | 2.70e-124 | 369 |
| Msa0700970 | MtrunA17_Chr8g0386781 | 40.275 | 437 | 245 | 3 | 1 | 434 | 1 | 424 | 2.98e-124 | 368 |
| Msa0700970 | MtrunA17_Chr3g0109241 | 89.855 | 138 | 14 | 0 | 268 | 405 | 1 | 138 | 7.39e-91 | 272 |
| Msa0700970 | MtrunA17_Chr7g0275431 | 30.562 | 445 | 288 | 8 | 2 | 433 | 3 | 439 | 7.08e-77 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700970 | AT5G19780.1 | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Msa0700970 | AT5G19770.1 | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Msa0700970 | AT1G64740.1 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 836 |
| Msa0700970 | AT1G50010.1 | 92.874 | 435 | 31 | 0 | 1 | 435 | 1 | 435 | 0.0 | 834 |
| Msa0700970 | AT1G04820.1 | 92.874 | 435 | 31 | 0 | 1 | 435 | 1 | 435 | 0.0 | 834 |
| Msa0700970 | AT4G14960.2 | 92.644 | 435 | 32 | 0 | 1 | 435 | 1 | 435 | 0.0 | 832 |
| Msa0700970 | AT4G14960.1 | 87.961 | 407 | 42 | 1 | 1 | 407 | 1 | 400 | 0.0 | 733 |
| Msa0700970 | AT1G75780.1 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 7.44e-128 | 378 |
| Msa0700970 | AT5G62690.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 2.10e-126 | 374 |
| Msa0700970 | AT5G62700.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 2.10e-126 | 374 |
| Msa0700970 | AT1G20010.1 | 41.244 | 434 | 246 | 2 | 1 | 434 | 1 | 425 | 2.12e-125 | 372 |
| Msa0700970 | AT2G29550.1 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 2.17e-125 | 372 |
| Msa0700970 | AT5G12250.1 | 41.475 | 434 | 244 | 3 | 1 | 434 | 1 | 424 | 3.04e-125 | 371 |
| Msa0700970 | AT4G20890.1 | 41.705 | 434 | 243 | 3 | 1 | 434 | 1 | 424 | 5.47e-125 | 370 |
| Msa0700970 | AT5G23860.2 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.21e-124 | 370 |
| Msa0700970 | AT5G23860.1 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.21e-124 | 370 |
| Msa0700970 | AT5G44340.1 | 41.705 | 434 | 243 | 3 | 1 | 434 | 1 | 424 | 2.66e-123 | 366 |
| Msa0700970 | AT5G05620.1 | 31.236 | 445 | 285 | 8 | 2 | 433 | 3 | 439 | 4.59e-78 | 251 |
| Msa0700970 | AT3G61650.1 | 30.519 | 462 | 295 | 9 | 2 | 445 | 3 | 456 | 6.45e-77 | 248 |
Find 139 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACGTCTTTCTGTTGATTA+TGG | 0.176344 | 4_4:-72170984 | Msa0700970:CDS |
| AGGTTTGGGTTCACTTCTTT+TGG | 0.254943 | 4_4:-72171006 | Msa0700970:CDS |
| GGTGGAACCGGTTCAGGTTT+GGG | 0.262975 | 4_4:-72171020 | Msa0700970:CDS |
| CAGCCTCCTTCAGTTGTTCC+TGG | 0.319747 | 4_4:-72169930 | Msa0700970:CDS |
| TTGCCGGAGATGAGTTGTTC+AGG | 0.320827 | 4_4:+72171265 | None:intergenic |
| AACACAGCATTGGTAATTTC+CGG | 0.327913 | 4_4:+72170435 | None:intergenic |
| TGGTGGAACCGGTTCAGGTT+TGG | 0.328516 | 4_4:-72171021 | Msa0700970:CDS |
| AACACATTCTTCAGCGAAAC+TGG | 0.328754 | 4_4:-72171382 | Msa0700970:CDS |
| TTTGGATCGTGTTAGGAAAT+TGG | 0.329849 | 4_4:-72171093 | Msa0700970:CDS |
| GTATTAGTAGTAGTAAATTA+AGG | 0.333898 | 4_4:+72171760 | None:intergenic |
| GTTGGTGGTGGAACCGGTTC+AGG | 0.343909 | 4_4:-72171026 | Msa0700970:CDS |
| ACCACCTCGTTGAGGTTTGA+TGG | 0.345949 | 4_4:-72170585 | Msa0700970:CDS |
| GTTAGCAGCGTCTTCTTTGC+CGG | 0.348183 | 4_4:+72171249 | None:intergenic |
| ATCTGTGTTTGGATCGTGTT+AGG | 0.350514 | 4_4:-72171100 | Msa0700970:CDS |
| AGAATTACCGACTTGGATTC+CGG | 0.354165 | 4_4:+72171583 | None:intergenic |
| CACTGATGTGGCGGTGCTCT+TGG | 0.354267 | 4_4:-72170709 | Msa0700970:CDS |
| AACGCTGTTGGTGGTGGAAC+CGG | 0.370166 | 4_4:-72171032 | Msa0700970:CDS |
| TCCAAGTCGGTAATTCTTGC+TGG | 0.386306 | 4_4:-72171577 | Msa0700970:CDS |
| ATGTCTTGAACTTATACAAT+AGG | 0.393095 | 4_4:+72169648 | None:intergenic |
| GTAGATGGTGAATCCAAGTT+TGG | 0.394713 | 4_4:+72170953 | None:intergenic |
| ACAGCAGCATTGACATCCTT+TGG | 0.397105 | 4_4:+72170327 | None:intergenic |
| TTCTTCAGCGAAACTGGTTC+AGG | 0.406764 | 4_4:-72171376 | Msa0700970:CDS |
| CATCATTCAAACTTGTGAAA+TGG | 0.409499 | 4_4:-72169527 | Msa0700970:three_prime_UTR |
| GGAAATTGTAGATCTGTGTT+TGG | 0.411361 | 4_4:-72171111 | Msa0700970:CDS |
| GCCTTAGCAGCAGAGATAAC+AGG | 0.413078 | 4_4:+72170480 | None:intergenic |
| CCAGTGGACAAAGGCTCTCT+TGG | 0.425867 | 4_4:+72169803 | None:intergenic |
| AGGCGATCTATGACATTTGT+AGG | 0.426144 | 4_4:-72170680 | Msa0700970:CDS |
| GCCATATATTTCCCATGCCT+TGG | 0.429047 | 4_4:+72170381 | None:intergenic |
| CTAGGTTTCAACTGCTGTTG+TGG | 0.430726 | 4_4:-72170775 | Msa0700970:intron |
| CAACTTATACCAACTTGAAC+AGG | 0.431265 | 4_4:-72170635 | Msa0700970:CDS |
| TCCAAGGCATGGGAAATATA+TGG | 0.435927 | 4_4:-72170382 | Msa0700970:CDS |
| ATGTATGACAGGTGCCCAAC+TGG | 0.444943 | 4_4:-72169975 | Msa0700970:intron |
| GATAACTGTACCGGTCTTCA+AGG | 0.448969 | 4_4:-72171068 | Msa0700970:CDS |
| GTCGGTGAGGGCATGGAAGA+AGG | 0.451862 | 4_4:-72169777 | Msa0700970:CDS |
| AAGTGAACCCAAACCTGAAC+CGG | 0.452878 | 4_4:+72171013 | None:intergenic |
| CATTTCACAAGTTTGAATGA+TGG | 0.459908 | 4_4:+72169528 | None:intergenic |
| TACCTGAGGGGAAGGGTAGA+TGG | 0.468178 | 4_4:+72170938 | None:intergenic |
| TGCCGGAGATGAGTTGTTCA+GGG | 0.468722 | 4_4:+72171266 | None:intergenic |
| CGAGAGCAGCAAGATCTTCA+CGG | 0.470136 | 4_4:+72169739 | None:intergenic |
| AACCTAGGCATCATGCCATC+AGG | 0.477441 | 4_4:+72171524 | None:intergenic |
| TCGGTGAGGGCATGGAAGAA+GGG | 0.478798 | 4_4:-72169776 | Msa0700970:CDS |
| TATTACAGTGATTCTTCCGT+TGG | 0.487833 | 4_4:-72171424 | Msa0700970:intron |
| CCAAGAGAGCCTTTGTCCAC+TGG | 0.491892 | 4_4:-72169803 | Msa0700970:CDS |
| ACGAGGATACGGCACAAGAT+TGG | 0.495414 | 4_4:+72170530 | None:intergenic |
| ACCTGTTATCTCTGCTGCTA+AGG | 0.495705 | 4_4:-72170481 | Msa0700970:CDS |
| CACCATCTACCCTTCCCCTC+AGG | 0.496887 | 4_4:-72170940 | Msa0700970:intron |
| AAATGAAATGAGAAATGAGA+AGG | 0.498236 | 4_4:+72171709 | None:intergenic |
| GTCATCGATGAAGTTCGTTC+CGG | 0.499563 | 4_4:-72171310 | Msa0700970:CDS |
| CTGGTATGTCGGTGAGGGCA+TGG | 0.501551 | 4_4:-72169784 | Msa0700970:CDS |
| GGAGCAGAAGATGATGAGGA+AGG | 0.503402 | 4_4:-72169687 | Msa0700970:CDS |
| CTGTTCAAGTTGGTATAAGT+TGG | 0.510056 | 4_4:+72170636 | None:intergenic |
| CACCCTGAACAACTCATCTC+CGG | 0.515494 | 4_4:-72171268 | Msa0700970:CDS |
| TACCACATTTGAAACCAGTT+GGG | 0.518530 | 4_4:+72169961 | None:intergenic |
| ATCGAACTTGTGATCAATGC+GGG | 0.523345 | 4_4:+72169836 | None:intergenic |
| GAGAAAGATTATGAAGAAGT+TGG | 0.523429 | 4_4:-72169717 | Msa0700970:CDS |
| GTTCAGGGTGGAAGAGTTGT+CGG | 0.523884 | 4_4:+72171281 | None:intergenic |
| CCCAGCAAGAATTACCGACT+TGG | 0.525270 | 4_4:+72171576 | None:intergenic |
| GGACTGTTCAGTTTGTTGAC+TGG | 0.529278 | 4_4:-72170284 | Msa0700970:intron |
| TCCTGGCGGTGACCTTGCTA+AGG | 0.530128 | 4_4:-72169913 | Msa0700970:CDS |
| GAAGAGTTGTCGGTAGGTAC+CGG | 0.530553 | 4_4:+72171291 | None:intergenic |
| AGAAGATGATGAGGAAGGAG+AGG | 0.532591 | 4_4:-72169682 | Msa0700970:CDS |
| TTATGAAGAAGTTGGTGCTG+AGG | 0.534554 | 4_4:-72169709 | Msa0700970:CDS |
| GAATGTTGTACCTGAGGGGA+AGG | 0.534693 | 4_4:+72170930 | None:intergenic |
| CAGTAACAACACTGCTGTTG+CGG | 0.536971 | 4_4:-72169868 | Msa0700970:CDS |
| GTCCACTGGTATGTCGGTGA+GGG | 0.540123 | 4_4:-72169789 | Msa0700970:CDS |
| CACTTAGCCATCATACTAGC+AGG | 0.541426 | 4_4:+72170408 | None:intergenic |
| GATACGGCACAAGATTGGTC+TGG | 0.542354 | 4_4:+72170535 | None:intergenic |
| TCATGAGCAGCTATCTGTGC+CGG | 0.543119 | 4_4:-72170454 | Msa0700970:CDS |
| TATGGAAAGAAATCCAAACT+TGG | 0.546100 | 4_4:-72170966 | Msa0700970:CDS |
| TATGAAGAAGTTGGTGCTGA+GGG | 0.548545 | 4_4:-72169708 | Msa0700970:CDS |
| ATACCACATTTGAAACCAGT+TGG | 0.549643 | 4_4:+72169960 | None:intergenic |
| TTGCGTACGCGTACTGCAAG+AGG | 0.551623 | 4_4:+72169231 | None:intergenic |
| AATGAAATGAGAAATGAGAA+GGG | 0.552863 | 4_4:+72171710 | None:intergenic |
| TTTAGATAGTCAGGAAGTCA+AGG | 0.553844 | 4_4:-72169277 | Msa0700970:three_prime_UTR |
| AGAGGCAATAAATTCAGTGT+TGG | 0.555343 | 4_4:+72169249 | None:intergenic |
| ACCCTTTATTTGGGAAACAA+AGG | 0.558060 | 4_4:-72169324 | Msa0700970:intron |
| CGGTGAGGGCATGGAAGAAG+GGG | 0.558712 | 4_4:-72169775 | Msa0700970:CDS |
| TCTTCTTGAGCACACTGATG+TGG | 0.559183 | 4_4:-72170721 | Msa0700970:CDS |
| GAGAGCAGCAAGATCTTCAC+GGG | 0.561278 | 4_4:+72169740 | None:intergenic |
| AGTATTCACATCGGTCAAGC+CGG | 0.564094 | 4_4:-72171602 | Msa0700970:CDS |
| ACCTTAGCAAGGTCACCGCC+AGG | 0.564664 | 4_4:+72169912 | None:intergenic |
| TAAAAGAACAATACGAGTGG+AGG | 0.565884 | 4_4:+72169570 | None:intergenic |
| CCAAGTCGGTAATTCTTGCT+GGG | 0.565989 | 4_4:-72171576 | Msa0700970:CDS |
| GCCTTTGTCCACTGGTATGT+CGG | 0.567211 | 4_4:-72169795 | Msa0700970:CDS |
| ATGAAATGAATACGAGGATA+CGG | 0.568430 | 4_4:+72170519 | None:intergenic |
| AAACCTCAACGAGGTGGTGA+GGG | 0.569782 | 4_4:+72170590 | None:intergenic |
| AGCCTGATGGCATGATGCCT+AGG | 0.570789 | 4_4:-72171526 | Msa0700970:intron |
| GTCGATAGAACACTGTTGTA+TGG | 0.573851 | 4_4:+72170750 | None:intergenic |
| GCTAAGTGTGATCCAAGGCA+TGG | 0.576706 | 4_4:-72170393 | Msa0700970:CDS |
| TGATATCAACCTGTTCAAGT+TGG | 0.577755 | 4_4:+72170626 | None:intergenic |
| GTTTGAGCCTGCTAGTATGA+TGG | 0.579221 | 4_4:-72170415 | Msa0700970:CDS |
| TGAGGGAGCAGAAGATGATG+AGG | 0.580692 | 4_4:-72169691 | Msa0700970:CDS |
| CAGCTCTTTGCACCTTAGCA+AGG | 0.580894 | 4_4:+72169901 | None:intergenic |
| ATAACTGTACCGGTCTTCAA+GGG | 0.586323 | 4_4:-72171067 | Msa0700970:CDS |
| AAATTGGCTGATAACTGTAC+CGG | 0.586586 | 4_4:-72171077 | Msa0700970:CDS |
| TGCCCAACTGGTTTCAAATG+TGG | 0.589673 | 4_4:-72169963 | Msa0700970:CDS |
| AGCAGGCTCAAACACAGCAT+TGG | 0.589885 | 4_4:+72170425 | None:intergenic |
| CAAACCTCAACGAGGTGGTG+AGG | 0.590642 | 4_4:+72170589 | None:intergenic |
| GAGCTTTACTGTCTCGAACA+TGG | 0.594726 | 4_4:-72171554 | Msa0700970:CDS |
| TGTCCACTGGTATGTCGGTG+AGG | 0.595519 | 4_4:-72169790 | Msa0700970:CDS |
| AAAAGAACAATACGAGTGGA+GGG | 0.596182 | 4_4:+72169571 | None:intergenic |
| GGCGGTGCTCTTGGATAATG+AGG | 0.598449 | 4_4:-72170700 | Msa0700970:CDS |
| AGATCTACGAAGACGGCGCG+TGG | 0.600243 | 4_4:+72171343 | None:intergenic |
| GAACATGGCATTCAGCCTGA+TGG | 0.604791 | 4_4:-72171539 | Msa0700970:CDS |
| TCACCGCCAGGAACAACTGA+AGG | 0.606748 | 4_4:+72169924 | None:intergenic |
| GGAGATCTCTTGATATTGAG+AGG | 0.607664 | 4_4:-72170659 | Msa0700970:CDS |
| CCGTGGTGATGTTGTTCCAA+AGG | 0.608496 | 4_4:-72170343 | Msa0700970:CDS |
| TGCATCGTGTGCTACTCCAA+CGG | 0.608526 | 4_4:+72171408 | None:intergenic |
| AATGTTGTACCTGAGGGGAA+GGG | 0.614483 | 4_4:+72170931 | None:intergenic |
| CTAAGTGTGATCCAAGGCAT+GGG | 0.617321 | 4_4:-72170392 | Msa0700970:CDS |
| CATCCCTCACCACCTCGTTG+AGG | 0.618692 | 4_4:-72170593 | Msa0700970:CDS |
| TGCCCTCACCGACATACCAG+TGG | 0.624103 | 4_4:+72169787 | None:intergenic |
| TAACAACACTGCTGTTGCGG+AGG | 0.625191 | 4_4:-72169865 | Msa0700970:CDS |
| TTCGCTAGAGGACACTACAC+TGG | 0.625494 | 4_4:-72171223 | Msa0700970:intron |
| AAGGATGTCAATGCTGCTGT+TGG | 0.630667 | 4_4:-72170324 | Msa0700970:CDS |
| GGAACGAACTTCATCGATGA+CGG | 0.631624 | 4_4:+72171312 | None:intergenic |
| GGTCAAGCCGGAATCCAAGT+CGG | 0.631989 | 4_4:-72171590 | Msa0700970:CDS |
| GGGTTCGAGATCTACGAAGA+CGG | 0.637629 | 4_4:+72171336 | None:intergenic |
| GCTGCTAACAATTTCGCTAG+AGG | 0.638911 | 4_4:-72171235 | Msa0700970:CDS |
| CGAACTTCATCGATGACGGT+GGG | 0.641237 | 4_4:+72171316 | None:intergenic |
| ACGAACTTCATCGATGACGG+TGG | 0.644676 | 4_4:+72171315 | None:intergenic |
| TCTTGAGCACACTGATGTGG+CGG | 0.645120 | 4_4:-72170718 | Msa0700970:CDS |
| ATGATGGAACTATATCACAC+TGG | 0.656762 | 4_4:+72169544 | None:intergenic |
| AGGGTGGAAGAGTTGTCGGT+AGG | 0.660011 | 4_4:+72171285 | None:intergenic |
| TGATGGCTAAGTGTGATCCA+AGG | 0.660907 | 4_4:-72170398 | Msa0700970:CDS |
| CCTCCTTCAGTTGTTCCTGG+CGG | 0.661195 | 4_4:-72169927 | Msa0700970:CDS |
| AAATAAAAGAACAATACGAG+TGG | 0.663738 | 4_4:+72169567 | None:intergenic |
| CCGCCAGGAACAACTGAAGG+AGG | 0.665389 | 4_4:+72169927 | None:intergenic |
| TTGGCACCATCAAAACAAAG+AGG | 0.672011 | 4_4:-72170305 | Msa0700970:CDS |
| ACCGACATACCAGTGGACAA+AGG | 0.672853 | 4_4:+72169794 | None:intergenic |
| ACCATCAAACCTCAACGAGG+TGG | 0.684702 | 4_4:+72170584 | None:intergenic |
| GAAATTATCAGTATTCACAT+CGG | 0.684879 | 4_4:-72171611 | Msa0700970:CDS |
| CGGAGATGAGTTGTTCAGGG+TGG | 0.684993 | 4_4:+72171269 | None:intergenic |
| GCTTGCTGTTTGATGTACCG+TGG | 0.703831 | 4_4:-72170360 | Msa0700970:CDS |
| TCTTGAATGTTGTACCTGAG+GGG | 0.708772 | 4_4:+72170926 | None:intergenic |
| GATCGAACTTGTGATCAATG+CGG | 0.718228 | 4_4:+72169835 | None:intergenic |
| GAAAGCATGAAATGAATACG+AGG | 0.732987 | 4_4:+72170513 | None:intergenic |
| CCTTTGGAACAACATCACCA+CGG | 0.768666 | 4_4:+72170343 | None:intergenic |
| AGCACCATCAAACCTCAACG+AGG | 0.774284 | 4_4:+72170581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCACAAATTAAAAAAACTTT+AGG | + | chr4_4:72169525-72169544 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTCTTTTTTTTG+TGG | - | chr4_4:72169852-72169871 | Msa0700970:CDS | 15.0% |
| !! | GTATTAGTAGTAGTAAATTA+AGG | + | chr4_4:72169241-72169260 | None:intergenic | 20.0% |
| !!! | TCTCTCATTTTTTTCTTTTT+TGG | + | chr4_4:72169369-72169388 | None:intergenic | 20.0% |
| !!! | TAATGGTGAATTGTTATTTT+TGG | - | chr4_4:72170198-72170217 | Msa0700970:intron | 20.0% |
| !! | AATAACTATTTGTAGAATGA+CGG | - | chr4_4:72170750-72170769 | Msa0700970:CDS | 20.0% |
| !!! | TTTTATAAGGGTAGATAATT+TGG | - | chr4_4:72170826-72170845 | Msa0700970:intron | 20.0% |
| !! | TTCATATTATAATGTATGAC+AGG | - | chr4_4:72171012-72171031 | Msa0700970:CDS | 20.0% |
| ! | AATGAAATGAGAAATGAGAA+GGG | + | chr4_4:72169291-72169310 | None:intergenic | 25.0% |
| ! | AAATGAAATGAGAAATGAGA+AGG | + | chr4_4:72169292-72169311 | None:intergenic | 25.0% |
| !!! | ATTTTAGAAAGAAGAAGAAG+TGG | + | chr4_4:72169333-72169352 | None:intergenic | 25.0% |
| ! | GAAATTATCAGTATTCACAT+CGG | - | chr4_4:72169387-72169406 | Msa0700970:intron | 25.0% |
| ! | GAAATGAAATAAACTAACCT+AGG | + | chr4_4:72169492-72169511 | None:intergenic | 25.0% |
| ! | AATCACGTTGATGTAAATAT+TGG | - | chr4_4:72170128-72170147 | Msa0700970:intron | 25.0% |
| !!! | ATTGGTTTTTCTGTTTGTAA+TGG | - | chr4_4:72170181-72170200 | Msa0700970:intron | 25.0% |
| !!! | GAATTGTTATTTTTGGATCT+AGG | - | chr4_4:72170205-72170224 | Msa0700970:intron | 25.0% |
| ! | ATGTCTTGAACTTATACAAT+AGG | + | chr4_4:72171353-72171372 | None:intergenic | 25.0% |
| ! | AAATAAAAGAACAATACGAG+TGG | + | chr4_4:72171434-72171453 | None:intergenic | 25.0% |
| ! | AATCAAAACGAAAATGTTGT+CGG | + | chr4_4:72171610-72171629 | None:intergenic | 25.0% |
| ! | TATTAACAGTATACAGTATG+CGG | - | chr4_4:72171637-72171656 | Msa0700970:exon | 25.0% |
| !!! | TTTTTTAGCAACCCTTTATT+TGG | - | chr4_4:72171664-72171683 | Msa0700970:five_prime_UTR | 25.0% |
| !!! | TTTTTAGCAACCCTTTATTT+GGG | - | chr4_4:72171665-72171684 | Msa0700970:five_prime_UTR | 25.0% |
| ! | CTATCTAAACAAAAACAAAC+TGG | + | chr4_4:72171710-72171729 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGTTTAGATAGTC+AGG | - | chr4_4:72171712-72171731 | Msa0700970:five_prime_UTR | 25.0% |
| AAATCTCGAAATTAGGGTTA+GGG | + | chr4_4:72169818-72169837 | None:intergenic | 30.0% | |
| AGCAAGAAATCTCGAAATTA+GGG | + | chr4_4:72169824-72169843 | None:intergenic | 30.0% | |
| AAGCAAGAAATCTCGAAATT+AGG | + | chr4_4:72169825-72169844 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTTTGTGGTTCAGT+TGG | - | chr4_4:72169861-72169880 | Msa0700970:CDS | 30.0% |
| TATGGAAAGAAATCCAAACT+TGG | - | chr4_4:72170032-72170051 | Msa0700970:intron | 30.0% | |
| GATTGATGTATAGATCATAG+TGG | - | chr4_4:72170155-72170174 | Msa0700970:intron | 30.0% | |
| ATGAAATGAATACGAGGATA+CGG | + | chr4_4:72170482-72170501 | None:intergenic | 30.0% | |
| CCTTATAAAATATGCAGCTA+CGG | + | chr4_4:72170816-72170835 | None:intergenic | 30.0% | |
| ! | CGTAGCTGCATATTTTATAA+GGG | - | chr4_4:72170814-72170833 | Msa0700970:intron | 30.0% |
| !! | ACAATTCACAACTTGTTACT+AGG | - | chr4_4:72170933-72170952 | Msa0700970:intron | 30.0% |
| GAGAAAGATTATGAAGAAGT+TGG | - | chr4_4:72171281-72171300 | Msa0700970:CDS | 30.0% | |
| TGATTGTTTCAAGCAAAAAG+AGG | - | chr4_4:72171385-72171404 | Msa0700970:CDS | 30.0% | |
| GATTGTTTCAAGCAAAAAGA+GGG | - | chr4_4:72171386-72171405 | Msa0700970:CDS | 30.0% | |
| CATTTCACAAGTTTGAATGA+TGG | + | chr4_4:72171473-72171492 | None:intergenic | 30.0% | |
| CATCATTCAAACTTGTGAAA+TGG | - | chr4_4:72171471-72171490 | Msa0700970:intron | 30.0% | |
| !! | TATGCGTCTAATTTTGTTGT+AGG | - | chr4_4:72171501-72171520 | Msa0700970:intron | 30.0% |
| ! | ACCTTTGTTTCCCAAATAAA+GGG | + | chr4_4:72171678-72171697 | None:intergenic | 30.0% |
| TATTACAGTGATTCTTCCGT+TGG | - | chr4_4:72169574-72169593 | Msa0700970:three_prime_UTR | 35.0% | |
| GAAATCTCGAAATTAGGGTT+AGG | + | chr4_4:72169819-72169838 | None:intergenic | 35.0% | |
| GGAAATTGTAGATCTGTGTT+TGG | - | chr4_4:72169887-72169906 | Msa0700970:CDS | 35.0% | |
| TTTGGATCGTGTTAGGAAAT+TGG | - | chr4_4:72169905-72169924 | Msa0700970:CDS | 35.0% | |
| AAATTGGCTGATAACTGTAC+CGG | - | chr4_4:72169921-72169940 | Msa0700970:CDS | 35.0% | |
| !!! | TTTTTGGTTTTCAACGCTGT+TGG | - | chr4_4:72169954-72169973 | Msa0700970:CDS | 35.0% |
| ! | GAACGTCTTTCTGTTGATTA+TGG | - | chr4_4:72170014-72170033 | Msa0700970:intron | 35.0% |
| ATCTTGAATGTTGTACCTGA+GGG | + | chr4_4:72170076-72170095 | None:intergenic | 35.0% | |
| TGATGTATAGATCATAGTGG+TGG | - | chr4_4:72170158-72170177 | Msa0700970:intron | 35.0% | |
| !! | TATAGATCATAGTGGTGGAT+TGG | - | chr4_4:72170163-72170182 | Msa0700970:intron | 35.0% |
| !! | CTGTTCAAGTTGGTATAAGT+TGG | + | chr4_4:72170365-72170384 | None:intergenic | 35.0% |
| CAACTTATACCAACTTGAAC+AGG | - | chr4_4:72170363-72170382 | Msa0700970:CDS | 35.0% | |
| TGATATCAACCTGTTCAAGT+TGG | + | chr4_4:72170375-72170394 | None:intergenic | 35.0% | |
| ! | GAAAGCATGAAATGAATACG+AGG | + | chr4_4:72170488-72170507 | None:intergenic | 35.0% |
| !! | AACACAGCATTGGTAATTTC+CGG | + | chr4_4:72170566-72170585 | None:intergenic | 35.0% |
| !!! | AACAGTCCTCTTTGTTTTGA+TGG | + | chr4_4:72170702-72170721 | None:intergenic | 35.0% |
| ! | CCGTAGCTGCATATTTTATA+AGG | - | chr4_4:72170813-72170832 | Msa0700970:intron | 35.0% |
| TACTAGGACTTAATGTGATC+TGG | - | chr4_4:72170949-72170968 | Msa0700970:CDS | 35.0% | |
| ACTAGGACTTAATGTGATCT+GGG | - | chr4_4:72170950-72170969 | Msa0700970:CDS | 35.0% | |
| TGGGCTACTAATTTCTCTTA+TGG | - | chr4_4:72170969-72170988 | Msa0700970:CDS | 35.0% | |
| ! | TACCACATTTGAAACCAGTT+GGG | + | chr4_4:72171040-72171059 | None:intergenic | 35.0% |
| ! | ATACCACATTTGAAACCAGT+TGG | + | chr4_4:72171041-72171060 | None:intergenic | 35.0% |
| AAAAGAACAATACGAGTGGA+GGG | + | chr4_4:72171430-72171449 | None:intergenic | 35.0% | |
| TAAAAGAACAATACGAGTGG+AGG | + | chr4_4:72171431-72171450 | None:intergenic | 35.0% | |
| ! | ATGATGGAACTATATCACAC+TGG | + | chr4_4:72171457-72171476 | None:intergenic | 35.0% |
| ! | ACCCTTTATTTGGGAAACAA+AGG | - | chr4_4:72171674-72171693 | Msa0700970:five_prime_UTR | 35.0% |
| ! | GACCTTTGTTTCCCAAATAA+AGG | + | chr4_4:72171679-72171698 | None:intergenic | 35.0% |
| TTTAGATAGTCAGGAAGTCA+AGG | - | chr4_4:72171721-72171740 | Msa0700970:five_prime_UTR | 35.0% | |
| AGAGGCAATAAATTCAGTGT+TGG | + | chr4_4:72171752-72171771 | None:intergenic | 35.0% | |
| !! | AGAATTACCGACTTGGATTC+CGG | + | chr4_4:72169418-72169437 | None:intergenic | 40.0% |
| AACACATTCTTCAGCGAAAC+TGG | - | chr4_4:72169616-72169635 | Msa0700970:three_prime_UTR | 40.0% | |
| ! | TTTTTGTGGTTCAGTTGGCA+AGG | - | chr4_4:72169866-72169885 | Msa0700970:CDS | 40.0% |
| ATCTGTGTTTGGATCGTGTT+AGG | - | chr4_4:72169898-72169917 | Msa0700970:CDS | 40.0% | |
| ! | ATAACTGTACCGGTCTTCAA+GGG | - | chr4_4:72169931-72169950 | Msa0700970:CDS | 40.0% |
| AACCAAAAACCCTTGAAGAC+CGG | + | chr4_4:72169943-72169962 | None:intergenic | 40.0% | |
| !! | AGGTTTGGGTTCACTTCTTT+TGG | - | chr4_4:72169992-72170011 | Msa0700970:intron | 40.0% |
| GTAGATGGTGAATCCAAGTT+TGG | + | chr4_4:72170048-72170067 | None:intergenic | 40.0% | |
| TCTTGAATGTTGTACCTGAG+GGG | + | chr4_4:72170075-72170094 | None:intergenic | 40.0% | |
| GATCTTGAATGTTGTACCTG+AGG | + | chr4_4:72170077-72170096 | None:intergenic | 40.0% | |
| GTCGATAGAACACTGTTGTA+TGG | + | chr4_4:72170251-72170270 | None:intergenic | 40.0% | |
| AGGCGATCTATGACATTTGT+AGG | - | chr4_4:72170318-72170337 | Msa0700970:CDS | 40.0% | |
| GGAGATCTCTTGATATTGAG+AGG | - | chr4_4:72170339-72170358 | Msa0700970:CDS | 40.0% | |
| TCCAAGGCATGGGAAATATA+TGG | - | chr4_4:72170616-72170635 | Msa0700970:CDS | 40.0% | |
| TTGGCACCATCAAAACAAAG+AGG | - | chr4_4:72170693-72170712 | Msa0700970:CDS | 40.0% | |
| ATCGAACTTGTGATCAATGC+GGG | + | chr4_4:72171165-72171184 | None:intergenic | 40.0% | |
| GATCGAACTTGTGATCAATG+CGG | + | chr4_4:72171166-72171185 | None:intergenic | 40.0% | |
| !! | TTATGAAGAAGTTGGTGCTG+AGG | - | chr4_4:72171289-72171308 | Msa0700970:CDS | 40.0% |
| !! | TATGAAGAAGTTGGTGCTGA+GGG | - | chr4_4:72171290-72171309 | Msa0700970:CDS | 40.0% |
| AGTATTCACATCGGTCAAGC+CGG | - | chr4_4:72169396-72169415 | Msa0700970:intron | 45.0% | |
| TCCAAGTCGGTAATTCTTGC+TGG | - | chr4_4:72169421-72169440 | Msa0700970:intron | 45.0% | |
| CCAAGTCGGTAATTCTTGCT+GGG | - | chr4_4:72169422-72169441 | Msa0700970:intron | 45.0% | |
| GAGCTTTACTGTCTCGAACA+TGG | - | chr4_4:72169444-72169463 | Msa0700970:three_prime_UTR | 45.0% | |
| ! | TTCTTCAGCGAAACTGGTTC+AGG | - | chr4_4:72169622-72169641 | Msa0700970:three_prime_UTR | 45.0% |
| GGAACGAACTTCATCGATGA+CGG | + | chr4_4:72169689-72169708 | None:intergenic | 45.0% | |
| GTCATCGATGAAGTTCGTTC+CGG | - | chr4_4:72169688-72169707 | Msa0700970:CDS | 45.0% | |
| GCTGCTAACAATTTCGCTAG+AGG | - | chr4_4:72169763-72169782 | Msa0700970:CDS | 45.0% | |
| ! | GATAACTGTACCGGTCTTCA+AGG | - | chr4_4:72169930-72169949 | Msa0700970:CDS | 45.0% |
| ! | TACCGGTCTTCAAGGGTTTT+TGG | - | chr4_4:72169938-72169957 | Msa0700970:CDS | 45.0% |
| !! | TTGGTTTTCAACGCTGTTGG+TGG | - | chr4_4:72169957-72169976 | Msa0700970:CDS | 45.0% |
| AAGTGAACCCAAACCTGAAC+CGG | + | chr4_4:72169988-72170007 | None:intergenic | 45.0% | |
| AATGTTGTACCTGAGGGGAA+GGG | + | chr4_4:72170070-72170089 | None:intergenic | 45.0% | |
| CTAGGTTTCAACTGCTGTTG+TGG | - | chr4_4:72170223-72170242 | Msa0700970:intron | 45.0% | |
| TCTTCTTGAGCACACTGATG+TGG | - | chr4_4:72170277-72170296 | Msa0700970:intron | 45.0% | |
| ACCTGTTATCTCTGCTGCTA+AGG | - | chr4_4:72170517-72170536 | Msa0700970:CDS | 45.0% | |
| GTTTGAGCCTGCTAGTATGA+TGG | - | chr4_4:72170583-72170602 | Msa0700970:CDS | 45.0% | |
| CACTTAGCCATCATACTAGC+AGG | + | chr4_4:72170593-72170612 | None:intergenic | 45.0% | |
| TGATGGCTAAGTGTGATCCA+AGG | - | chr4_4:72170600-72170619 | Msa0700970:CDS | 45.0% | |
| CTAAGTGTGATCCAAGGCAT+GGG | - | chr4_4:72170606-72170625 | Msa0700970:CDS | 45.0% | |
| GCCATATATTTCCCATGCCT+TGG | + | chr4_4:72170620-72170639 | None:intergenic | 45.0% | |
| !! | CCTTTGGAACAACATCACCA+CGG | + | chr4_4:72170658-72170677 | None:intergenic | 45.0% |
| !! | ACAGCAGCATTGACATCCTT+TGG | + | chr4_4:72170674-72170693 | None:intergenic | 45.0% |
| AAGGATGTCAATGCTGCTGT+TGG | - | chr4_4:72170674-72170693 | Msa0700970:CDS | 45.0% | |
| !! | GGACTGTTCAGTTTGTTGAC+TGG | - | chr4_4:72170714-72170733 | Msa0700970:CDS | 45.0% |
| ! | TGCCCAACTGGTTTCAAATG+TGG | - | chr4_4:72171035-72171054 | Msa0700970:CDS | 45.0% |
| CAGTAACAACACTGCTGTTG+CGG | - | chr4_4:72171130-72171149 | Msa0700970:intron | 45.0% | |
| AGAAGATGATGAGGAAGGAG+AGG | - | chr4_4:72171316-72171335 | Msa0700970:CDS | 45.0% | |
| ATGTTGTCGGAACAGACAGT+AGG | + | chr4_4:72171597-72171616 | None:intergenic | 45.0% | |
| ! | CCCAGCAAGAATTACCGACT+TGG | + | chr4_4:72169425-72169444 | None:intergenic | 50.0% |
| GAACATGGCATTCAGCCTGA+TGG | - | chr4_4:72169459-72169478 | Msa0700970:three_prime_UTR | 50.0% | |
| AACCTAGGCATCATGCCATC+AGG | + | chr4_4:72169477-72169496 | None:intergenic | 50.0% | |
| ! | TGCATCGTGTGCTACTCCAA+CGG | + | chr4_4:72169593-72169612 | None:intergenic | 50.0% |
| GGGTTCGAGATCTACGAAGA+CGG | + | chr4_4:72169665-72169684 | None:intergenic | 50.0% | |
| ! | CGAACTTCATCGATGACGGT+GGG | + | chr4_4:72169685-72169704 | None:intergenic | 50.0% |
| ! | ACGAACTTCATCGATGACGG+TGG | + | chr4_4:72169686-72169705 | None:intergenic | 50.0% |
| GAAGAGTTGTCGGTAGGTAC+CGG | + | chr4_4:72169710-72169729 | None:intergenic | 50.0% | |
| GTTCAGGGTGGAAGAGTTGT+CGG | + | chr4_4:72169720-72169739 | None:intergenic | 50.0% | |
| CACCCTGAACAACTCATCTC+CGG | - | chr4_4:72169730-72169749 | Msa0700970:CDS | 50.0% | |
| TGCCGGAGATGAGTTGTTCA+GGG | + | chr4_4:72169735-72169754 | None:intergenic | 50.0% | |
| TTGCCGGAGATGAGTTGTTC+AGG | + | chr4_4:72169736-72169755 | None:intergenic | 50.0% | |
| GTTAGCAGCGTCTTCTTTGC+CGG | + | chr4_4:72169752-72169771 | None:intergenic | 50.0% | |
| TTCGCTAGAGGACACTACAC+TGG | - | chr4_4:72169775-72169794 | Msa0700970:CDS | 50.0% | |
| !! | GTTTTCAACGCTGTTGGTGG+TGG | - | chr4_4:72169960-72169979 | Msa0700970:CDS | 50.0% |
| GAATGTTGTACCTGAGGGGA+AGG | + | chr4_4:72170071-72170090 | None:intergenic | 50.0% | |
| TCTTGAGCACACTGATGTGG+CGG | - | chr4_4:72170280-72170299 | Msa0700970:intron | 50.0% | |
| AAACCTCAACGAGGTGGTGA+GGG | + | chr4_4:72170411-72170430 | None:intergenic | 50.0% | |
| ACCACCTCGTTGAGGTTTGA+TGG | - | chr4_4:72170413-72170432 | Msa0700970:CDS | 50.0% | |
| ACCATCAAACCTCAACGAGG+TGG | + | chr4_4:72170417-72170436 | None:intergenic | 50.0% | |
| AGCACCATCAAACCTCAACG+AGG | + | chr4_4:72170420-72170439 | None:intergenic | 50.0% | |
| ! | GATACGGCACAAGATTGGTC+TGG | + | chr4_4:72170466-72170485 | None:intergenic | 50.0% |
| ACGAGGATACGGCACAAGAT+TGG | + | chr4_4:72170471-72170490 | None:intergenic | 50.0% | |
| GCCTTAGCAGCAGAGATAAC+AGG | + | chr4_4:72170521-72170540 | None:intergenic | 50.0% | |
| TCATGAGCAGCTATCTGTGC+CGG | - | chr4_4:72170544-72170563 | Msa0700970:CDS | 50.0% | |
| AGCAGGCTCAAACACAGCAT+TGG | + | chr4_4:72170576-72170595 | None:intergenic | 50.0% | |
| GCTAAGTGTGATCCAAGGCA+TGG | - | chr4_4:72170605-72170624 | Msa0700970:CDS | 50.0% | |
| !! | GCTTGCTGTTTGATGTACCG+TGG | - | chr4_4:72170638-72170657 | Msa0700970:CDS | 50.0% |
| ! | CCGTGGTGATGTTGTTCCAA+AGG | - | chr4_4:72170655-72170674 | Msa0700970:CDS | 50.0% |
| ATGTATGACAGGTGCCCAAC+TGG | - | chr4_4:72171023-72171042 | Msa0700970:CDS | 50.0% | |
| CAGCTCTTTGCACCTTAGCA+AGG | + | chr4_4:72171100-72171119 | None:intergenic | 50.0% | |
| TAACAACACTGCTGTTGCGG+AGG | - | chr4_4:72171133-72171152 | Msa0700970:intron | 50.0% | |
| GCCTTTGTCCACTGGTATGT+CGG | - | chr4_4:72171203-72171222 | Msa0700970:intron | 50.0% | |
| ACCGACATACCAGTGGACAA+AGG | + | chr4_4:72171207-72171226 | None:intergenic | 50.0% | |
| GAGAGCAGCAAGATCTTCAC+GGG | + | chr4_4:72171261-72171280 | None:intergenic | 50.0% | |
| CGAGAGCAGCAAGATCTTCA+CGG | + | chr4_4:72171262-72171281 | None:intergenic | 50.0% | |
| TGAGGGAGCAGAAGATGATG+AGG | - | chr4_4:72171307-72171326 | Msa0700970:CDS | 50.0% | |
| GGAGCAGAAGATGATGAGGA+AGG | - | chr4_4:72171311-72171330 | Msa0700970:CDS | 50.0% | |
| GGTCAAGCCGGAATCCAAGT+CGG | - | chr4_4:72169408-72169427 | Msa0700970:intron | 55.0% | |
| AGCCTGATGGCATGATGCCT+AGG | - | chr4_4:72169472-72169491 | Msa0700970:three_prime_UTR | 55.0% | |
| AGGGTGGAAGAGTTGTCGGT+AGG | + | chr4_4:72169716-72169735 | None:intergenic | 55.0% | |
| CGGAGATGAGTTGTTCAGGG+TGG | + | chr4_4:72169732-72169751 | None:intergenic | 55.0% | |
| !! | AACGCTGTTGGTGGTGGAAC+CGG | - | chr4_4:72169966-72169985 | Msa0700970:CDS | 55.0% |
| ! | TGGTGGAACCGGTTCAGGTT+TGG | - | chr4_4:72169977-72169996 | Msa0700970:intron | 55.0% |
| ! | GGTGGAACCGGTTCAGGTTT+GGG | - | chr4_4:72169978-72169997 | Msa0700970:intron | 55.0% |
| TACCTGAGGGGAAGGGTAGA+TGG | + | chr4_4:72170063-72170082 | None:intergenic | 55.0% | |
| GGCGGTGCTCTTGGATAATG+AGG | - | chr4_4:72170298-72170317 | Msa0700970:CDS | 55.0% | |
| CAAACCTCAACGAGGTGGTG+AGG | + | chr4_4:72170412-72170431 | None:intergenic | 55.0% | |
| CAGCCTCCTTCAGTTGTTCC+TGG | - | chr4_4:72171068-72171087 | Msa0700970:CDS | 55.0% | |
| CCTCCTTCAGTTGTTCCTGG+CGG | - | chr4_4:72171071-72171090 | Msa0700970:CDS | 55.0% | |
| TCACCGCCAGGAACAACTGA+AGG | + | chr4_4:72171077-72171096 | None:intergenic | 55.0% | |
| CCAGTGGACAAAGGCTCTCT+TGG | + | chr4_4:72171198-72171217 | None:intergenic | 55.0% | |
| CCAAGAGAGCCTTTGTCCAC+TGG | - | chr4_4:72171195-72171214 | Msa0700970:intron | 55.0% | |
| TGTCCACTGGTATGTCGGTG+AGG | - | chr4_4:72171208-72171227 | Msa0700970:intron | 55.0% | |
| GTCCACTGGTATGTCGGTGA+GGG | - | chr4_4:72171209-72171228 | Msa0700970:intron | 55.0% | |
| ! | TCGGTGAGGGCATGGAAGAA+GGG | - | chr4_4:72171222-72171241 | Msa0700970:intron | 55.0% |
| TTGCGTACGCGTACTGCAAG+AGG | + | chr4_4:72171770-72171789 | None:intergenic | 55.0% | |
| AGATCTACGAAGACGGCGCG+TGG | + | chr4_4:72169658-72169677 | None:intergenic | 60.0% | |
| !! | GTTGGTGGTGGAACCGGTTC+AGG | - | chr4_4:72169972-72169991 | Msa0700970:intron | 60.0% |
| CACCATCTACCCTTCCCCTC+AGG | - | chr4_4:72170058-72170077 | Msa0700970:intron | 60.0% | |
| CACTGATGTGGCGGTGCTCT+TGG | - | chr4_4:72170289-72170308 | Msa0700970:CDS | 60.0% | |
| CATCCCTCACCACCTCGTTG+AGG | - | chr4_4:72170405-72170424 | Msa0700970:CDS | 60.0% | |
| CCGCCAGGAACAACTGAAGG+AGG | + | chr4_4:72171074-72171093 | None:intergenic | 60.0% | |
| TCCTGGCGGTGACCTTGCTA+AGG | - | chr4_4:72171085-72171104 | Msa0700970:CDS | 60.0% | |
| ACCTTAGCAAGGTCACCGCC+AGG | + | chr4_4:72171089-72171108 | None:intergenic | 60.0% | |
| TGCCCTCACCGACATACCAG+TGG | + | chr4_4:72171214-72171233 | None:intergenic | 60.0% | |
| CTGGTATGTCGGTGAGGGCA+TGG | - | chr4_4:72171214-72171233 | Msa0700970:intron | 60.0% | |
| ! | GTCGGTGAGGGCATGGAAGA+AGG | - | chr4_4:72171221-72171240 | Msa0700970:intron | 60.0% |
| ! | CGGTGAGGGCATGGAAGAAG+GGG | - | chr4_4:72171223-72171242 | Msa0700970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72169220 | 72171800 | 72169220 | ID=Msa0700970;Name=Msa0700970 |
| chr4_4 | mRNA | 72169220 | 72171800 | 72169220 | ID=Msa0700970-mRNA-1;Parent=Msa0700970;Name=Msa0700970-mRNA-1;_AED=0.07;_eAED=0.07;_QI=161|1|1|1|0.8|0.66|6|365|449 |
| chr4_4 | exon | 72169220 | 72169340 | 72169220 | ID=Msa0700970-mRNA-1:exon:22035;Parent=Msa0700970-mRNA-1 |
| chr4_4 | exon | 72169430 | 72169986 | 72169430 | ID=Msa0700970-mRNA-1:exon:22034;Parent=Msa0700970-mRNA-1 |
| chr4_4 | exon | 72170285 | 72170793 | 72170285 | ID=Msa0700970-mRNA-1:exon:22033;Parent=Msa0700970-mRNA-1 |
| chr4_4 | exon | 72170941 | 72171140 | 72170941 | ID=Msa0700970-mRNA-1:exon:22032;Parent=Msa0700970-mRNA-1 |
| chr4_4 | exon | 72171224 | 72171438 | 72171224 | ID=Msa0700970-mRNA-1:exon:22031;Parent=Msa0700970-mRNA-1 |
| chr4_4 | exon | 72171527 | 72171800 | 72171527 | ID=Msa0700970-mRNA-1:exon:22030;Parent=Msa0700970-mRNA-1 |
| chr4_4 | five_prime_UTR | 72171640 | 72171800 | 72171640 | ID=Msa0700970-mRNA-1:five_prime_utr;Parent=Msa0700970-mRNA-1 |
| chr4_4 | CDS | 72171527 | 72171639 | 72171527 | ID=Msa0700970-mRNA-1:cds;Parent=Msa0700970-mRNA-1 |
| chr4_4 | CDS | 72171224 | 72171438 | 72171224 | ID=Msa0700970-mRNA-1:cds;Parent=Msa0700970-mRNA-1 |
| chr4_4 | CDS | 72170941 | 72171140 | 72170941 | ID=Msa0700970-mRNA-1:cds;Parent=Msa0700970-mRNA-1 |
| chr4_4 | CDS | 72170285 | 72170793 | 72170285 | ID=Msa0700970-mRNA-1:cds;Parent=Msa0700970-mRNA-1 |
| chr4_4 | CDS | 72169674 | 72169986 | 72169674 | ID=Msa0700970-mRNA-1:cds;Parent=Msa0700970-mRNA-1 |
| chr4_4 | three_prime_UTR | 72169430 | 72169673 | 72169430 | ID=Msa0700970-mRNA-1:three_prime_utr;Parent=Msa0700970-mRNA-1 |
| chr4_4 | three_prime_UTR | 72169220 | 72169340 | 72169220 | ID=Msa0700970-mRNA-1:three_prime_utr;Parent=Msa0700970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
