Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480760 | XP_013456939.2 | 82.274 | 519 | 54 | 8 | 1 | 485 | 1 | 515 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480760 | sp|O23305|Y4449_ARATH | 53.333 | 105 | 43 | 1 | 5 | 103 | 1 | 105 | 2.10e-27 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480760 | A0A396IDM1 | 82.274 | 519 | 54 | 8 | 1 | 485 | 1 | 515 | 0.0 | 767 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0480760 | Msa0945220 | 0.991596 | 1.696486e-188 | -8.615850e-47 |
| Msa0480760 | Msa1308860 | 0.807192 | 5.700116e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480760 | MtrunA17_Chr4g0046411 | 82.274 | 519 | 54 | 8 | 1 | 485 | 1 | 515 | 0.0 | 767 |
| Msa0480760 | MtrunA17_Chr8g0367734 | 81.888 | 519 | 56 | 8 | 1 | 485 | 26 | 540 | 0.0 | 764 |
| Msa0480760 | MtrunA17_Chr3g0127721 | 74.286 | 385 | 62 | 8 | 127 | 485 | 17 | 390 | 8.35e-170 | 483 |
| Msa0480760 | MtrunA17_Chr4g0046421 | 61.594 | 138 | 44 | 4 | 1 | 131 | 1 | 136 | 2.27e-44 | 157 |
| Msa0480760 | MtrunA17_Chr4g0046421 | 73.404 | 94 | 22 | 2 | 390 | 482 | 183 | 274 | 1.14e-34 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480760 | AT4G14490.1 | 53.333 | 105 | 43 | 1 | 5 | 103 | 1 | 105 | 2.14e-28 | 116 |
| Msa0480760 | AT3G02400.1 | 56.311 | 103 | 39 | 1 | 6 | 102 | 2 | 104 | 2.50e-28 | 119 |
| Msa0480760 | AT3G02400.2 | 56.311 | 103 | 39 | 1 | 6 | 102 | 2 | 104 | 3.85e-28 | 117 |
Find 139 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTAAAAGTGTTAAATTT+AGG | 0.113256 | 3_3:+86327348 | Msa0480760:CDS |
| TACTAAAAGTGTTAAATTTA+GGG | 0.234323 | 3_3:+86327349 | Msa0480760:CDS |
| TGATTCTGCTGATGTGAATT+TGG | 0.240026 | 3_3:+86327490 | Msa0480760:CDS |
| GATTTGGAGAAGATGAATTT+AGG | 0.263231 | 3_3:+86328337 | Msa0480760:CDS |
| CATAGGTTTATCTTCTACTA+TGG | 0.263666 | 3_3:-86327306 | None:intergenic |
| GTTTCATCATGTATCTGTTT+TGG | 0.281623 | 3_3:-86328391 | None:intergenic |
| AGGTGAGTGGTTTGATTTCT+TGG | 0.284800 | 3_3:+86328357 | Msa0480760:CDS |
| TGATTCGAGTAATGGTAATT+TGG | 0.299985 | 3_3:+86327583 | Msa0480760:CDS |
| CTCGTAACCTTCATCGGTTC+AGG | 0.305130 | 3_3:-86327440 | None:intergenic |
| TGAATTGAGTGTTGGAGATT+TGG | 0.321055 | 3_3:+86327805 | Msa0480760:CDS |
| GGTTTCCGTAGGGTTACTTT+GGG | 0.323544 | 3_3:-86327285 | None:intergenic |
| CTCACTATCCATTTCAATTC+CGG | 0.326349 | 3_3:+86327116 | Msa0480760:CDS |
| TGCTAAAGGAAAGGAGAAAT+TGG | 0.331726 | 3_3:+86328036 | Msa0480760:CDS |
| GGATGAGAATTGGCCTGATT+TGG | 0.337680 | 3_3:+86328321 | Msa0480760:CDS |
| TGATTCGAGCAATGGAGATT+TGG | 0.343124 | 3_3:+86327694 | Msa0480760:CDS |
| ACAAGGAATGCGAAGAATAA+AGG | 0.353579 | 3_3:+86327872 | Msa0480760:CDS |
| TCCAATTACCGGAATTGAAA+TGG | 0.367892 | 3_3:-86327124 | None:intergenic |
| AAGTGTTAAATTTAGGGTTC+CGG | 0.374553 | 3_3:+86327355 | Msa0480760:CDS |
| AGTAACTTCACCGATCTTAA+TGG | 0.379519 | 3_3:-86327237 | None:intergenic |
| CAAGGAATGCGAAGAATAAA+GGG | 0.387553 | 3_3:+86327873 | Msa0480760:CDS |
| GCATTAGCACAACTGTTGTT+AGG | 0.389065 | 3_3:+86328543 | Msa0480760:three_prime_UTR |
| TGGTGGATTCGGGTTTGAAT+AGG | 0.396059 | 3_3:-86327025 | None:intergenic |
| ATTTGAATGGGGATGAGAAT+TGG | 0.396400 | 3_3:+86328311 | Msa0480760:CDS |
| TCGTCACCAACGCACTCTTC+CGG | 0.397410 | 3_3:-86328154 | None:intergenic |
| AAATTCATCTTCTCCAAATC+AGG | 0.398213 | 3_3:-86328334 | None:intergenic |
| AATAGCGGTACAATATATTC+TGG | 0.400231 | 3_3:-86328620 | None:intergenic |
| CCATCACCAACACGCTCTTC+TGG | 0.402421 | 3_3:-86328106 | None:intergenic |
| TGGATTCGGGTTTGAATAGG+TGG | 0.412924 | 3_3:-86327022 | None:intergenic |
| TGGTTTCCGTAGGGTTACTT+TGG | 0.426738 | 3_3:-86327286 | None:intergenic |
| CTGAGATGAAAAGGAGTATT+CGG | 0.427337 | 3_3:-86327203 | None:intergenic |
| AAAGGAGTATTCGGAGGAAC+AGG | 0.428281 | 3_3:-86327194 | None:intergenic |
| GGAAATACCTGGATCTTTGA+TGG | 0.433151 | 3_3:-86327084 | None:intergenic |
| AGTAGAAGATAAACCTATGA+AGG | 0.445778 | 3_3:+86327310 | Msa0480760:CDS |
| CCCGAATCCACCATCAAAAT+CGG | 0.448567 | 3_3:+86327035 | Msa0480760:CDS |
| TAAAGAGAAGGAGAAATTAC+CGG | 0.453884 | 3_3:+86328135 | Msa0480760:CDS |
| GACGTACTCGCGGAGTCTCT+CGG | 0.467250 | 3_3:-86328446 | None:intergenic |
| GGAGGGTGTGAAAGAGAAAG+TGG | 0.475266 | 3_3:+86327715 | Msa0480760:CDS |
| CCAGAAGAGCGTGTTGGTGA+TGG | 0.475527 | 3_3:+86328106 | Msa0480760:CDS |
| GAATAAAGGGGTTGTGATTG+AGG | 0.479194 | 3_3:+86327886 | Msa0480760:CDS |
| GAAGATTTGAGCTTGGTGAA+TGG | 0.484158 | 3_3:+86327908 | Msa0480760:CDS |
| ATTGATGAAGTTAACAAGGA+TGG | 0.484506 | 3_3:-86327261 | None:intergenic |
| TTACGAGGAATACGCGGAGC+AGG | 0.485036 | 3_3:+86327456 | Msa0480760:CDS |
| GAACCATCGCTGAGATGAAA+AGG | 0.497457 | 3_3:-86327212 | None:intergenic |
| TCTTCTACTATGGTTTCCGT+AGG | 0.497993 | 3_3:-86327296 | None:intergenic |
| GGATTCGGGTTTGAATAGGT+GGG | 0.504613 | 3_3:-86327021 | None:intergenic |
| GGTTTCGCCTTTACGTGGAC+CGG | 0.505011 | 3_3:-86327000 | None:intergenic |
| AGGAATTGAAGTGTGAGAGA+TGG | 0.506082 | 3_3:-86326975 | None:intergenic |
| GAGATATGTGATTCGAGTAA+TGG | 0.509014 | 3_3:+86327575 | Msa0480760:CDS |
| AAAACAGATACATGATGAAA+CGG | 0.510214 | 3_3:+86328393 | Msa0480760:CDS |
| GAGGTTTGTGATTCGAGCAA+TGG | 0.513584 | 3_3:+86327686 | Msa0480760:CDS |
| TAAGGGGAAGAAGAAATTGC+AGG | 0.513857 | 3_3:+86327970 | Msa0480760:intron |
| ATGTATCAGAATCAGAAAGC+TGG | 0.516426 | 3_3:+86328472 | Msa0480760:CDS |
| TTCGAGCAATGGAGATTTGG+AGG | 0.519234 | 3_3:+86327697 | Msa0480760:CDS |
| CTTGTCATCCTCACACTCCT+CGG | 0.521001 | 3_3:-86327854 | None:intergenic |
| GAATAAGAAGAATACGGTTG+AGG | 0.521957 | 3_3:+86327667 | Msa0480760:CDS |
| TTCCTCGCCGGTCCACGTAA+AGG | 0.523068 | 3_3:+86326993 | Msa0480760:CDS |
| TTCGAAGAATAAGAAGAATA+CGG | 0.526530 | 3_3:+86327661 | Msa0480760:CDS |
| GAGGAAGAGTGTGTTGGTGA+TGG | 0.527304 | 3_3:+86328058 | Msa0480760:CDS |
| AGGTGTTTGGTGGAAATACC+TGG | 0.527977 | 3_3:-86327095 | None:intergenic |
| GTATTCCTCGTAACCTTCAT+CGG | 0.528796 | 3_3:-86327446 | None:intergenic |
| GAAATACCTGGATCTTTGAT+GGG | 0.532079 | 3_3:-86327083 | None:intergenic |
| CAGGAAGAGATTGTTGGTGA+TGG | 0.532227 | 3_3:+86327989 | Msa0480760:CDS |
| AACCTCCCCATCAAAGATCC+AGG | 0.532781 | 3_3:+86327077 | Msa0480760:CDS |
| AATAAGAATTGAAAGATGCA+AGG | 0.535063 | 3_3:-86328691 | None:intergenic |
| GAGAATTGTGATGATGCTAA+AGG | 0.541257 | 3_3:+86328022 | Msa0480760:CDS |
| ATAAGAATTGAAAGATGCAA+GGG | 0.542131 | 3_3:-86328690 | None:intergenic |
| ATCCACCATCAAAATCGGTC+GGG | 0.543736 | 3_3:+86327040 | Msa0480760:CDS |
| GAGGTTTCTGAATTGAGTGT+TGG | 0.543871 | 3_3:+86327797 | Msa0480760:intron |
| AAATTGCAGGAAGAGATTGT+TGG | 0.543947 | 3_3:+86327983 | Msa0480760:CDS |
| TGGTGTGAAGGAGAAGGTGG+AGG | 0.547202 | 3_3:+86327829 | Msa0480760:CDS |
| AAGTAAAATTGTTATTAACA+AGG | 0.548220 | 3_3:-86328716 | None:intergenic |
| CTTCTACTATGGTTTCCGTA+GGG | 0.549514 | 3_3:-86327295 | None:intergenic |
| ATGGATAGTGAGGTGTTTGG+TGG | 0.549947 | 3_3:-86327105 | None:intergenic |
| TGATGGAGATGATAAAGAAA+AGG | 0.550272 | 3_3:+86328075 | Msa0480760:CDS |
| CAAGAAAAGTGTGTTGGTGA+TGG | 0.550772 | 3_3:+86328250 | Msa0480760:CDS |
| TGATGGAGAAGATAAAGAGA+AGG | 0.555886 | 3_3:+86328123 | Msa0480760:CDS |
| TGATGAAGAAGATAAAGAGA+AGG | 0.556018 | 3_3:+86328219 | Msa0480760:CDS |
| GGATCGACCTGAACCGATGA+AGG | 0.556237 | 3_3:+86327433 | Msa0480760:CDS |
| AACAGGTTTAGTGTCTAAAA+CGG | 0.560608 | 3_3:-86327177 | None:intergenic |
| TGGAGGAGCCGAGGAGTGTG+AGG | 0.560610 | 3_3:+86327846 | Msa0480760:CDS |
| TACCTGGATCTTTGATGGGG+AGG | 0.560776 | 3_3:-86327079 | None:intergenic |
| GATTGAGGAAGATTTGAGCT+TGG | 0.563165 | 3_3:+86327901 | Msa0480760:CDS |
| AGGAGAAGGTGGAGGAGCCG+AGG | 0.563651 | 3_3:+86327837 | Msa0480760:CDS |
| GAGATTGTTGGTGATGGAGA+TGG | 0.565638 | 3_3:+86327995 | Msa0480760:CDS |
| TGGAGATTTGGATGGTGTGA+AGG | 0.565692 | 3_3:+86327817 | Msa0480760:CDS |
| AGAAGATGAATTTAGGTGAG+TGG | 0.565794 | 3_3:+86328344 | Msa0480760:CDS |
| GGATGATGTGAAGGAGAAAG+TGG | 0.566386 | 3_3:+86327604 | Msa0480760:intron |
| TTGTGATGATGCTAAAGGAA+AGG | 0.566732 | 3_3:+86328027 | Msa0480760:CDS |
| TTGAATGGTGATGATGAAGA+TGG | 0.567085 | 3_3:+86327404 | Msa0480760:CDS |
| AGGTGGGTTTCGCCTTTACG+TGG | 0.568734 | 3_3:-86327005 | None:intergenic |
| GGATGGTGTGAAGGAGAAGG+TGG | 0.569564 | 3_3:+86327826 | Msa0480760:CDS |
| GAAATGGATAGTGAGGTGTT+TGG | 0.570327 | 3_3:-86327108 | None:intergenic |
| GACGAAGATCAAATGTTGAA+TGG | 0.571226 | 3_3:+86327389 | Msa0480760:CDS |
| CTCACACTTCAATTCCTCGC+CGG | 0.576251 | 3_3:+86326981 | Msa0480760:CDS |
| AGAAGAATGTGAGGGTGACA+AGG | 0.576462 | 3_3:+86327636 | Msa0480760:CDS |
| AAGTGTGTTGGTGATGGAGA+TGG | 0.577597 | 3_3:+86328256 | Msa0480760:CDS |
| TAAAGGAAAGGAGAAATTGG+AGG | 0.581664 | 3_3:+86328039 | Msa0480760:CDS |
| CGAGGAGTGTGAGGATGACA+AGG | 0.584161 | 3_3:+86327855 | Msa0480760:CDS |
| CGAAGAATGTGAGGGTGACG+AGG | 0.587389 | 3_3:+86327525 | Msa0480760:CDS |
| TTGAGTGTTGGAGATTTGGA+TGG | 0.587988 | 3_3:+86327809 | Msa0480760:CDS |
| AATTGAAGTGTGAGAGATGG+AGG | 0.588847 | 3_3:-86326972 | None:intergenic |
| GGTACAATATATTCTGGAGA+GGG | 0.589097 | 3_3:-86328614 | None:intergenic |
| GGGTGTGAAAGAGAAAGTGG+AGG | 0.589644 | 3_3:+86327718 | Msa0480760:CDS |
| AAATCACAAGAAAAGTGTGT+TGG | 0.591822 | 3_3:+86328244 | Msa0480760:CDS |
| TTTGGATGGTGTGAAGGAGA+AGG | 0.592111 | 3_3:+86327823 | Msa0480760:CDS |
| CGCCTTTACGTGGACCGGCG+AGG | 0.592205 | 3_3:-86326995 | None:intergenic |
| CGGAATTGAAATGGATAGTG+AGG | 0.592334 | 3_3:-86327115 | None:intergenic |
| GGGGATTGATGAAGTTAACA+AGG | 0.594113 | 3_3:-86327265 | None:intergenic |
| TTTGAGCTTGGTGAATGGAG+TGG | 0.602709 | 3_3:+86327913 | Msa0480760:CDS |
| TGATGATGAAGATGGAATTG+TGG | 0.602937 | 3_3:+86327412 | Msa0480760:CDS |
| AATTTACCAGAAGAGCGTGT+TGG | 0.606294 | 3_3:+86328100 | Msa0480760:CDS |
| ACAGATCTCGATTCTTCTAA+CGG | 0.609144 | 3_3:+86327152 | Msa0480760:intron |
| AAATTACCGGAAGAGTGCGT+TGG | 0.609976 | 3_3:+86328148 | Msa0480760:CDS |
| GTAGAAGATAAACCTATGAA+GGG | 0.610432 | 3_3:+86327311 | Msa0480760:CDS |
| AATCCACCATCAAAATCGGT+CGG | 0.610443 | 3_3:+86327039 | Msa0480760:CDS |
| CGGTACAATATATTCTGGAG+AGG | 0.613303 | 3_3:-86328615 | None:intergenic |
| GATGGTTCCACCATTAAGAT+CGG | 0.618053 | 3_3:+86327227 | Msa0480760:CDS |
| TCGAGCAATGGAGATTTGGA+GGG | 0.619860 | 3_3:+86327698 | Msa0480760:CDS |
| GTTTCCGTAGGGTTACTTTG+GGG | 0.622007 | 3_3:-86327284 | None:intergenic |
| CAATCCCCAAAGTAACCCTA+CGG | 0.625349 | 3_3:+86327280 | Msa0480760:CDS |
| AGGAAGTGAAGAAGAATGTG+AGG | 0.626445 | 3_3:+86327627 | Msa0480760:CDS |
| AGGAAGTGAAGAAGAATGTG+AGG | 0.626445 | 3_3:+86327738 | Msa0480760:CDS |
| CTGAACCGATGAAGGTTACG+AGG | 0.630587 | 3_3:+86327441 | Msa0480760:CDS |
| TGATGGGGAGGTTGTTGCCG+CGG | 0.633183 | 3_3:-86327067 | None:intergenic |
| AACTTCACCGATCTTAATGG+TGG | 0.642883 | 3_3:-86327234 | None:intergenic |
| CTGTAGTATCGAAGAATGTG+AGG | 0.646172 | 3_3:+86327516 | Msa0480760:CDS |
| CTACATATACTAGCATTCAG+TGG | 0.652902 | 3_3:-86328500 | None:intergenic |
| TGAAGGTTACGAGGAATACG+CGG | 0.654682 | 3_3:+86327450 | Msa0480760:CDS |
| AAAATCGGTCGGGTCATCCG+CGG | 0.657840 | 3_3:+86327050 | Msa0480760:CDS |
| TGATGTGAAGGAGAAAGTGG+AGG | 0.668251 | 3_3:+86327607 | Msa0480760:intron |
| AAATACCTGGATCTTTGATG+GGG | 0.678030 | 3_3:-86327082 | None:intergenic |
| AGATGAAAAGGAGTATTCGG+AGG | 0.680462 | 3_3:-86327200 | None:intergenic |
| GGAAGTGAAGAAGAATGTGA+GGG | 0.687843 | 3_3:+86327628 | Msa0480760:CDS |
| GGAAGTGAAGAAGAATGTGA+GGG | 0.687843 | 3_3:+86327739 | Msa0480760:CDS |
| TTCACTACAAGCAATAATAG+CGG | 0.701182 | 3_3:-86328635 | None:intergenic |
| AAGGAATGCGAAGAATAAAG+GGG | 0.713160 | 3_3:+86327874 | Msa0480760:CDS |
| AAATTGGAGGAAGAGTGTGT+TGG | 0.722760 | 3_3:+86328052 | Msa0480760:CDS |
| GATACATTATGACGTACTCG+CGG | 0.753024 | 3_3:-86328456 | None:intergenic |
| TGTAGTATCGAAGAATGTGA+GGG | 0.756754 | 3_3:+86327517 | Msa0480760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTAAAAGTGTTAAATTTA+GGG | + | chr3_3:86327349-86327368 | Msa0480760:CDS | 15.0% |
| !!! | AAGTAAAATTGTTATTAACA+AGG | - | chr3_3:86328719-86328738 | None:intergenic | 15.0% |
| !!! | TACTAAAAGTGTTAAATTTA+GGG | + | chr3_3:86327349-86327368 | Msa0480760:CDS | 15.0% |
| !!! | AAGTAAAATTGTTATTAACA+AGG | - | chr3_3:86328719-86328738 | None:intergenic | 15.0% |
| !!! | GTACTAAAAGTGTTAAATTT+AGG | + | chr3_3:86327348-86327367 | Msa0480760:CDS | 20.0% |
| !! | GAGGAATAAGATAAATAAAA+TGG | + | chr3_3:86327775-86327794 | Msa0480760:intron | 20.0% |
| !! | GAATAAGATAAATAAAATGG+AGG | + | chr3_3:86327778-86327797 | Msa0480760:intron | 20.0% |
| !! | TAAAGAAAAAGAGAAATTAC+AGG | + | chr3_3:86328183-86328202 | Msa0480760:CDS | 20.0% |
| !! | AAAGAAAAAGAGAATTTGAA+TGG | + | chr3_3:86328298-86328317 | Msa0480760:CDS | 20.0% |
| !! | AAGAAAAAGAGAATTTGAAT+GGG | + | chr3_3:86328299-86328318 | Msa0480760:CDS | 20.0% |
| !!! | GTACTAAAAGTGTTAAATTT+AGG | + | chr3_3:86327348-86327367 | Msa0480760:CDS | 20.0% |
| !! | GAGGAATAAGATAAATAAAA+TGG | + | chr3_3:86327775-86327794 | Msa0480760:intron | 20.0% |
| !! | GAATAAGATAAATAAAATGG+AGG | + | chr3_3:86327778-86327797 | Msa0480760:intron | 20.0% |
| !! | TAAAGAAAAAGAGAAATTAC+AGG | + | chr3_3:86328183-86328202 | Msa0480760:CDS | 20.0% |
| !! | AAAGAAAAAGAGAATTTGAA+TGG | + | chr3_3:86328298-86328317 | Msa0480760:CDS | 20.0% |
| !! | AAGAAAAAGAGAATTTGAAT+GGG | + | chr3_3:86328299-86328318 | Msa0480760:CDS | 20.0% |
| ! | TTCGAAGAATAAGAAGAATA+CGG | + | chr3_3:86327661-86327680 | Msa0480760:CDS | 25.0% |
| ! | ATGTTGAGAAAAAGAAAACA+AGG | + | chr3_3:86327939-86327958 | Msa0480760:intron | 25.0% |
| ! | TGTTGAGAAAAAGAAAACAA+GGG | + | chr3_3:86327940-86327959 | Msa0480760:intron | 25.0% |
| ! | AGAAAAAGAGAATTTGAATG+GGG | + | chr3_3:86328300-86328319 | Msa0480760:CDS | 25.0% |
| ! | AAAACAGATACATGATGAAA+CGG | + | chr3_3:86328393-86328412 | Msa0480760:CDS | 25.0% |
| ! | ATAAGAATTGAAAGATGCAA+GGG | - | chr3_3:86328693-86328712 | None:intergenic | 25.0% |
| ! | AATAAGAATTGAAAGATGCA+AGG | - | chr3_3:86328694-86328713 | None:intergenic | 25.0% |
| ! | TTCGAAGAATAAGAAGAATA+CGG | + | chr3_3:86327661-86327680 | Msa0480760:CDS | 25.0% |
| ! | ATGTTGAGAAAAAGAAAACA+AGG | + | chr3_3:86327939-86327958 | Msa0480760:intron | 25.0% |
| ! | TGTTGAGAAAAAGAAAACAA+GGG | + | chr3_3:86327940-86327959 | Msa0480760:intron | 25.0% |
| ! | AGAAAAAGAGAATTTGAATG+GGG | + | chr3_3:86328300-86328319 | Msa0480760:CDS | 25.0% |
| ! | AAAACAGATACATGATGAAA+CGG | + | chr3_3:86328393-86328412 | Msa0480760:CDS | 25.0% |
| ! | ATAAGAATTGAAAGATGCAA+GGG | - | chr3_3:86328693-86328712 | None:intergenic | 25.0% |
| ! | AATAAGAATTGAAAGATGCA+AGG | - | chr3_3:86328694-86328713 | None:intergenic | 25.0% |
| AACAGGTTTAGTGTCTAAAA+CGG | - | chr3_3:86327180-86327199 | None:intergenic | 30.0% | |
| ATTGATGAAGTTAACAAGGA+TGG | - | chr3_3:86327264-86327283 | None:intergenic | 30.0% | |
| CATAGGTTTATCTTCTACTA+TGG | - | chr3_3:86327309-86327328 | None:intergenic | 30.0% | |
| AGTAGAAGATAAACCTATGA+AGG | + | chr3_3:86327310-86327329 | Msa0480760:CDS | 30.0% | |
| GTAGAAGATAAACCTATGAA+GGG | + | chr3_3:86327311-86327330 | Msa0480760:CDS | 30.0% | |
| AAACCTATGAAGGGTAAAAA+AGG | + | chr3_3:86327320-86327339 | Msa0480760:CDS | 30.0% | |
| AACCTATGAAGGGTAAAAAA+GGG | + | chr3_3:86327321-86327340 | Msa0480760:CDS | 30.0% | |
| ! | AAGTGTTAAATTTAGGGTTC+CGG | + | chr3_3:86327355-86327374 | Msa0480760:CDS | 30.0% |
| TGATTCGAGTAATGGTAATT+TGG | + | chr3_3:86327583-86327602 | Msa0480760:CDS | 30.0% | |
| GTTGAGAAAAAGAAAACAAG+GGG | + | chr3_3:86327941-86327960 | Msa0480760:intron | 30.0% | |
| TGATGGAGATGATAAAGAAA+AGG | + | chr3_3:86328075-86328094 | Msa0480760:CDS | 30.0% | |
| TAAAGAGAAGGAGAAATTAC+CGG | + | chr3_3:86328135-86328154 | Msa0480760:CDS | 30.0% | |
| TGATGAAGAAGATAAAGAGA+AGG | + | chr3_3:86328219-86328238 | Msa0480760:CDS | 30.0% | |
| ! | AAATCACAAGAAAAGTGTGT+TGG | + | chr3_3:86328244-86328263 | Msa0480760:CDS | 30.0% |
| AAATTCATCTTCTCCAAATC+AGG | - | chr3_3:86328337-86328356 | None:intergenic | 30.0% | |
| GATTTGGAGAAGATGAATTT+AGG | + | chr3_3:86328337-86328356 | Msa0480760:CDS | 30.0% | |
| ! | GTTTCATCATGTATCTGTTT+TGG | - | chr3_3:86328394-86328413 | None:intergenic | 30.0% |
| AATAGCGGTACAATATATTC+TGG | - | chr3_3:86328623-86328642 | None:intergenic | 30.0% | |
| TTCACTACAAGCAATAATAG+CGG | - | chr3_3:86328638-86328657 | None:intergenic | 30.0% | |
| AACAGGTTTAGTGTCTAAAA+CGG | - | chr3_3:86327180-86327199 | None:intergenic | 30.0% | |
| ATTGATGAAGTTAACAAGGA+TGG | - | chr3_3:86327264-86327283 | None:intergenic | 30.0% | |
| CATAGGTTTATCTTCTACTA+TGG | - | chr3_3:86327309-86327328 | None:intergenic | 30.0% | |
| AGTAGAAGATAAACCTATGA+AGG | + | chr3_3:86327310-86327329 | Msa0480760:CDS | 30.0% | |
| GTAGAAGATAAACCTATGAA+GGG | + | chr3_3:86327311-86327330 | Msa0480760:CDS | 30.0% | |
| AAACCTATGAAGGGTAAAAA+AGG | + | chr3_3:86327320-86327339 | Msa0480760:CDS | 30.0% | |
| AACCTATGAAGGGTAAAAAA+GGG | + | chr3_3:86327321-86327340 | Msa0480760:CDS | 30.0% | |
| ! | AAGTGTTAAATTTAGGGTTC+CGG | + | chr3_3:86327355-86327374 | Msa0480760:CDS | 30.0% |
| TGATTCGAGTAATGGTAATT+TGG | + | chr3_3:86327583-86327602 | Msa0480760:CDS | 30.0% | |
| GTTGAGAAAAAGAAAACAAG+GGG | + | chr3_3:86327941-86327960 | Msa0480760:intron | 30.0% | |
| TGATGGAGATGATAAAGAAA+AGG | + | chr3_3:86328075-86328094 | Msa0480760:CDS | 30.0% | |
| TAAAGAGAAGGAGAAATTAC+CGG | + | chr3_3:86328135-86328154 | Msa0480760:CDS | 30.0% | |
| TGATGAAGAAGATAAAGAGA+AGG | + | chr3_3:86328219-86328238 | Msa0480760:CDS | 30.0% | |
| ! | AAATCACAAGAAAAGTGTGT+TGG | + | chr3_3:86328244-86328263 | Msa0480760:CDS | 30.0% |
| AAATTCATCTTCTCCAAATC+AGG | - | chr3_3:86328337-86328356 | None:intergenic | 30.0% | |
| GATTTGGAGAAGATGAATTT+AGG | + | chr3_3:86328337-86328356 | Msa0480760:CDS | 30.0% | |
| ! | GTTTCATCATGTATCTGTTT+TGG | - | chr3_3:86328394-86328413 | None:intergenic | 30.0% |
| AATAGCGGTACAATATATTC+TGG | - | chr3_3:86328623-86328642 | None:intergenic | 30.0% | |
| TTCACTACAAGCAATAATAG+CGG | - | chr3_3:86328638-86328657 | None:intergenic | 30.0% | |
| AAATACCTGGATCTTTGATG+GGG | - | chr3_3:86327085-86327104 | None:intergenic | 35.0% | |
| GAAATACCTGGATCTTTGAT+GGG | - | chr3_3:86327086-86327105 | None:intergenic | 35.0% | |
| CTCACTATCCATTTCAATTC+CGG | + | chr3_3:86327116-86327135 | Msa0480760:CDS | 35.0% | |
| TCCATTTCAATTCCGGTAAT+TGG | + | chr3_3:86327123-86327142 | Msa0480760:intron | 35.0% | |
| TCCAATTACCGGAATTGAAA+TGG | - | chr3_3:86327127-86327146 | None:intergenic | 35.0% | |
| ATCTGTGAGAATCCAATTAC+CGG | - | chr3_3:86327138-86327157 | None:intergenic | 35.0% | |
| ACAGATCTCGATTCTTCTAA+CGG | + | chr3_3:86327152-86327171 | Msa0480760:intron | 35.0% | |
| !! | CTGAGATGAAAAGGAGTATT+CGG | - | chr3_3:86327206-86327225 | None:intergenic | 35.0% |
| AGTAACTTCACCGATCTTAA+TGG | - | chr3_3:86327240-86327259 | None:intergenic | 35.0% | |
| !!! | TTCCCTTTTTTACCCTTCAT+AGG | - | chr3_3:86327326-86327345 | None:intergenic | 35.0% |
| GACGAAGATCAAATGTTGAA+TGG | + | chr3_3:86327389-86327408 | Msa0480760:CDS | 35.0% | |
| ! | TTGAATGGTGATGATGAAGA+TGG | + | chr3_3:86327404-86327423 | Msa0480760:CDS | 35.0% |
| ! | TGATGATGAAGATGGAATTG+TGG | + | chr3_3:86327412-86327431 | Msa0480760:CDS | 35.0% |
| TGATTCTGCTGATGTGAATT+TGG | + | chr3_3:86327490-86327509 | Msa0480760:CDS | 35.0% | |
| ! | TGTAGTATCGAAGAATGTGA+GGG | + | chr3_3:86327517-86327536 | Msa0480760:CDS | 35.0% |
| GAGATATGTGATTCGAGTAA+TGG | + | chr3_3:86327575-86327594 | Msa0480760:CDS | 35.0% | |
| TGGTAATTTGGATGATGTGA+AGG | + | chr3_3:86327595-86327614 | Msa0480760:intron | 35.0% | |
| GAATAAGAAGAATACGGTTG+AGG | + | chr3_3:86327667-86327686 | Msa0480760:CDS | 35.0% | |
| !! | TGAATTGAGTGTTGGAGATT+TGG | + | chr3_3:86327805-86327824 | Msa0480760:CDS | 35.0% |
| ACAAGGAATGCGAAGAATAA+AGG | + | chr3_3:86327872-86327891 | Msa0480760:CDS | 35.0% | |
| CAAGGAATGCGAAGAATAAA+GGG | + | chr3_3:86327873-86327892 | Msa0480760:CDS | 35.0% | |
| AAGGAATGCGAAGAATAAAG+GGG | + | chr3_3:86327874-86327893 | Msa0480760:CDS | 35.0% | |
| AAATTGCAGGAAGAGATTGT+TGG | + | chr3_3:86327983-86328002 | Msa0480760:CDS | 35.0% | |
| ! | GAGAATTGTGATGATGCTAA+AGG | + | chr3_3:86328022-86328041 | Msa0480760:CDS | 35.0% |
| ! | TTGTGATGATGCTAAAGGAA+AGG | + | chr3_3:86328027-86328046 | Msa0480760:CDS | 35.0% |
| TGCTAAAGGAAAGGAGAAAT+TGG | + | chr3_3:86328036-86328055 | Msa0480760:CDS | 35.0% | |
| TAAAGGAAAGGAGAAATTGG+AGG | + | chr3_3:86328039-86328058 | Msa0480760:CDS | 35.0% | |
| TGATGGAGAAGATAAAGAGA+AGG | + | chr3_3:86328123-86328142 | Msa0480760:CDS | 35.0% | |
| ATTTGAATGGGGATGAGAAT+TGG | + | chr3_3:86328311-86328330 | Msa0480760:CDS | 35.0% | |
| AGAAGATGAATTTAGGTGAG+TGG | + | chr3_3:86328344-86328363 | Msa0480760:CDS | 35.0% | |
| ATGTATCAGAATCAGAAAGC+TGG | + | chr3_3:86328472-86328491 | Msa0480760:CDS | 35.0% | |
| CTACATATACTAGCATTCAG+TGG | - | chr3_3:86328503-86328522 | None:intergenic | 35.0% | |
| ! | GGTACAATATATTCTGGAGA+GGG | - | chr3_3:86328617-86328636 | None:intergenic | 35.0% |
| AAATACCTGGATCTTTGATG+GGG | - | chr3_3:86327085-86327104 | None:intergenic | 35.0% | |
| GAAATACCTGGATCTTTGAT+GGG | - | chr3_3:86327086-86327105 | None:intergenic | 35.0% | |
| CTCACTATCCATTTCAATTC+CGG | + | chr3_3:86327116-86327135 | Msa0480760:CDS | 35.0% | |
| TCCATTTCAATTCCGGTAAT+TGG | + | chr3_3:86327123-86327142 | Msa0480760:intron | 35.0% | |
| TCCAATTACCGGAATTGAAA+TGG | - | chr3_3:86327127-86327146 | None:intergenic | 35.0% | |
| ATCTGTGAGAATCCAATTAC+CGG | - | chr3_3:86327138-86327157 | None:intergenic | 35.0% | |
| ACAGATCTCGATTCTTCTAA+CGG | + | chr3_3:86327152-86327171 | Msa0480760:intron | 35.0% | |
| !! | CTGAGATGAAAAGGAGTATT+CGG | - | chr3_3:86327206-86327225 | None:intergenic | 35.0% |
| AGTAACTTCACCGATCTTAA+TGG | - | chr3_3:86327240-86327259 | None:intergenic | 35.0% | |
| !!! | TTCCCTTTTTTACCCTTCAT+AGG | - | chr3_3:86327326-86327345 | None:intergenic | 35.0% |
| GACGAAGATCAAATGTTGAA+TGG | + | chr3_3:86327389-86327408 | Msa0480760:CDS | 35.0% | |
| ! | TTGAATGGTGATGATGAAGA+TGG | + | chr3_3:86327404-86327423 | Msa0480760:CDS | 35.0% |
| ! | TGATGATGAAGATGGAATTG+TGG | + | chr3_3:86327412-86327431 | Msa0480760:CDS | 35.0% |
| TGATTCTGCTGATGTGAATT+TGG | + | chr3_3:86327490-86327509 | Msa0480760:CDS | 35.0% | |
| ! | TGTAGTATCGAAGAATGTGA+GGG | + | chr3_3:86327517-86327536 | Msa0480760:CDS | 35.0% |
| GAGATATGTGATTCGAGTAA+TGG | + | chr3_3:86327575-86327594 | Msa0480760:CDS | 35.0% | |
| TGGTAATTTGGATGATGTGA+AGG | + | chr3_3:86327595-86327614 | Msa0480760:intron | 35.0% | |
| GAATAAGAAGAATACGGTTG+AGG | + | chr3_3:86327667-86327686 | Msa0480760:CDS | 35.0% | |
| !! | TGAATTGAGTGTTGGAGATT+TGG | + | chr3_3:86327805-86327824 | Msa0480760:CDS | 35.0% |
| ACAAGGAATGCGAAGAATAA+AGG | + | chr3_3:86327872-86327891 | Msa0480760:CDS | 35.0% | |
| CAAGGAATGCGAAGAATAAA+GGG | + | chr3_3:86327873-86327892 | Msa0480760:CDS | 35.0% | |
| AAGGAATGCGAAGAATAAAG+GGG | + | chr3_3:86327874-86327893 | Msa0480760:CDS | 35.0% | |
| AAATTGCAGGAAGAGATTGT+TGG | + | chr3_3:86327983-86328002 | Msa0480760:CDS | 35.0% | |
| ! | GAGAATTGTGATGATGCTAA+AGG | + | chr3_3:86328022-86328041 | Msa0480760:CDS | 35.0% |
| ! | TTGTGATGATGCTAAAGGAA+AGG | + | chr3_3:86328027-86328046 | Msa0480760:CDS | 35.0% |
| TGCTAAAGGAAAGGAGAAAT+TGG | + | chr3_3:86328036-86328055 | Msa0480760:CDS | 35.0% | |
| TAAAGGAAAGGAGAAATTGG+AGG | + | chr3_3:86328039-86328058 | Msa0480760:CDS | 35.0% | |
| TGATGGAGAAGATAAAGAGA+AGG | + | chr3_3:86328123-86328142 | Msa0480760:CDS | 35.0% | |
| ATTTGAATGGGGATGAGAAT+TGG | + | chr3_3:86328311-86328330 | Msa0480760:CDS | 35.0% | |
| AGAAGATGAATTTAGGTGAG+TGG | + | chr3_3:86328344-86328363 | Msa0480760:CDS | 35.0% | |
| ATGTATCAGAATCAGAAAGC+TGG | + | chr3_3:86328472-86328491 | Msa0480760:CDS | 35.0% | |
| CTACATATACTAGCATTCAG+TGG | - | chr3_3:86328503-86328522 | None:intergenic | 35.0% | |
| ! | GGTACAATATATTCTGGAGA+GGG | - | chr3_3:86328617-86328636 | None:intergenic | 35.0% |
| AATTGAAGTGTGAGAGATGG+AGG | - | chr3_3:86326975-86326994 | None:intergenic | 40.0% | |
| AGGAATTGAAGTGTGAGAGA+TGG | - | chr3_3:86326978-86326997 | None:intergenic | 40.0% | |
| !!! | ACCGATTTTGATGGTGGATT+CGG | - | chr3_3:86327039-86327058 | None:intergenic | 40.0% |
| AATCCACCATCAAAATCGGT+CGG | + | chr3_3:86327039-86327058 | Msa0480760:CDS | 40.0% | |
| GGAAATACCTGGATCTTTGA+TGG | - | chr3_3:86327087-86327106 | None:intergenic | 40.0% | |
| ! | GAAATGGATAGTGAGGTGTT+TGG | - | chr3_3:86327111-86327130 | None:intergenic | 40.0% |
| CGGAATTGAAATGGATAGTG+AGG | - | chr3_3:86327118-86327137 | None:intergenic | 40.0% | |
| !! | AGATGAAAAGGAGTATTCGG+AGG | - | chr3_3:86327203-86327222 | None:intergenic | 40.0% |
| GATGGTTCCACCATTAAGAT+CGG | + | chr3_3:86327227-86327246 | Msa0480760:CDS | 40.0% | |
| AACTTCACCGATCTTAATGG+TGG | - | chr3_3:86327237-86327256 | None:intergenic | 40.0% | |
| GGGGATTGATGAAGTTAACA+AGG | - | chr3_3:86327268-86327287 | None:intergenic | 40.0% | |
| CTTCTACTATGGTTTCCGTA+GGG | - | chr3_3:86327298-86327317 | None:intergenic | 40.0% | |
| TCTTCTACTATGGTTTCCGT+AGG | - | chr3_3:86327299-86327318 | None:intergenic | 40.0% | |
| TCTTCGTCAATACTCTGAAC+CGG | - | chr3_3:86327377-86327396 | None:intergenic | 40.0% | |
| GTATTCCTCGTAACCTTCAT+CGG | - | chr3_3:86327449-86327468 | None:intergenic | 40.0% | |
| ! | CTGTAGTATCGAAGAATGTG+AGG | + | chr3_3:86327516-86327535 | Msa0480760:CDS | 40.0% |
| AGGAAGTGAAGAAGAATGTG+AGG | + | chr3_3:86327627-86327646 | Msa0480760:CDS | 40.0% | |
| GGAAGTGAAGAAGAATGTGA+GGG | + | chr3_3:86327628-86327647 | Msa0480760:CDS | 40.0% | |
| TGATTCGAGCAATGGAGATT+TGG | + | chr3_3:86327694-86327713 | Msa0480760:CDS | 40.0% | |
| AGGAAGTGAAGAAGAATGTG+AGG | + | chr3_3:86327627-86327646 | Msa0480760:CDS | 40.0% | |
| GGAAGTGAAGAAGAATGTGA+GGG | + | chr3_3:86327628-86327647 | Msa0480760:CDS | 40.0% | |
| GAGGTTTCTGAATTGAGTGT+TGG | + | chr3_3:86327797-86327816 | Msa0480760:intron | 40.0% | |
| !! | TTGAGTGTTGGAGATTTGGA+TGG | + | chr3_3:86327809-86327828 | Msa0480760:CDS | 40.0% |
| GAATAAAGGGGTTGTGATTG+AGG | + | chr3_3:86327886-86327905 | Msa0480760:CDS | 40.0% | |
| GATTGAGGAAGATTTGAGCT+TGG | + | chr3_3:86327901-86327920 | Msa0480760:CDS | 40.0% | |
| ! | GAAGATTTGAGCTTGGTGAA+TGG | + | chr3_3:86327908-86327927 | Msa0480760:CDS | 40.0% |
| GAGAAAAAGAAAACAAGGGG+CGG | + | chr3_3:86327944-86327963 | Msa0480760:intron | 40.0% | |
| TAAGGGGAAGAAGAAATTGC+AGG | + | chr3_3:86327970-86327989 | Msa0480760:intron | 40.0% | |
| ! | AAATTGGAGGAAGAGTGTGT+TGG | + | chr3_3:86328052-86328071 | Msa0480760:CDS | 40.0% |
| ! | AATTTACCAGAAGAGCGTGT+TGG | + | chr3_3:86328100-86328119 | Msa0480760:CDS | 40.0% |
| ! | CAAGAAAAGTGTGTTGGTGA+TGG | + | chr3_3:86328250-86328269 | Msa0480760:CDS | 40.0% |
| ! | AGGTGAGTGGTTTGATTTCT+TGG | + | chr3_3:86328357-86328376 | Msa0480760:CDS | 40.0% |
| GATACATTATGACGTACTCG+CGG | - | chr3_3:86328459-86328478 | None:intergenic | 40.0% | |
| GCATTAGCACAACTGTTGTT+AGG | + | chr3_3:86328543-86328562 | Msa0480760:three_prime_UTR | 40.0% | |
| ! | CGGTACAATATATTCTGGAG+AGG | - | chr3_3:86328618-86328637 | None:intergenic | 40.0% |
| AATTGAAGTGTGAGAGATGG+AGG | - | chr3_3:86326975-86326994 | None:intergenic | 40.0% | |
| AGGAATTGAAGTGTGAGAGA+TGG | - | chr3_3:86326978-86326997 | None:intergenic | 40.0% | |
| !!! | ACCGATTTTGATGGTGGATT+CGG | - | chr3_3:86327039-86327058 | None:intergenic | 40.0% |
| AATCCACCATCAAAATCGGT+CGG | + | chr3_3:86327039-86327058 | Msa0480760:CDS | 40.0% | |
| GGAAATACCTGGATCTTTGA+TGG | - | chr3_3:86327087-86327106 | None:intergenic | 40.0% | |
| ! | GAAATGGATAGTGAGGTGTT+TGG | - | chr3_3:86327111-86327130 | None:intergenic | 40.0% |
| CGGAATTGAAATGGATAGTG+AGG | - | chr3_3:86327118-86327137 | None:intergenic | 40.0% | |
| !! | AGATGAAAAGGAGTATTCGG+AGG | - | chr3_3:86327203-86327222 | None:intergenic | 40.0% |
| GATGGTTCCACCATTAAGAT+CGG | + | chr3_3:86327227-86327246 | Msa0480760:CDS | 40.0% | |
| AACTTCACCGATCTTAATGG+TGG | - | chr3_3:86327237-86327256 | None:intergenic | 40.0% | |
| GGGGATTGATGAAGTTAACA+AGG | - | chr3_3:86327268-86327287 | None:intergenic | 40.0% | |
| CTTCTACTATGGTTTCCGTA+GGG | - | chr3_3:86327298-86327317 | None:intergenic | 40.0% | |
| TCTTCTACTATGGTTTCCGT+AGG | - | chr3_3:86327299-86327318 | None:intergenic | 40.0% | |
| TCTTCGTCAATACTCTGAAC+CGG | - | chr3_3:86327377-86327396 | None:intergenic | 40.0% | |
| GTATTCCTCGTAACCTTCAT+CGG | - | chr3_3:86327449-86327468 | None:intergenic | 40.0% | |
| ! | CTGTAGTATCGAAGAATGTG+AGG | + | chr3_3:86327516-86327535 | Msa0480760:CDS | 40.0% |
| AGGAAGTGAAGAAGAATGTG+AGG | + | chr3_3:86327627-86327646 | Msa0480760:CDS | 40.0% | |
| GGAAGTGAAGAAGAATGTGA+GGG | + | chr3_3:86327628-86327647 | Msa0480760:CDS | 40.0% | |
| TGATTCGAGCAATGGAGATT+TGG | + | chr3_3:86327694-86327713 | Msa0480760:CDS | 40.0% | |
| AGGAAGTGAAGAAGAATGTG+AGG | + | chr3_3:86327627-86327646 | Msa0480760:CDS | 40.0% | |
| GGAAGTGAAGAAGAATGTGA+GGG | + | chr3_3:86327628-86327647 | Msa0480760:CDS | 40.0% | |
| GAGGTTTCTGAATTGAGTGT+TGG | + | chr3_3:86327797-86327816 | Msa0480760:intron | 40.0% | |
| !! | TTGAGTGTTGGAGATTTGGA+TGG | + | chr3_3:86327809-86327828 | Msa0480760:CDS | 40.0% |
| GAATAAAGGGGTTGTGATTG+AGG | + | chr3_3:86327886-86327905 | Msa0480760:CDS | 40.0% | |
| GATTGAGGAAGATTTGAGCT+TGG | + | chr3_3:86327901-86327920 | Msa0480760:CDS | 40.0% | |
| ! | GAAGATTTGAGCTTGGTGAA+TGG | + | chr3_3:86327908-86327927 | Msa0480760:CDS | 40.0% |
| GAGAAAAAGAAAACAAGGGG+CGG | + | chr3_3:86327944-86327963 | Msa0480760:intron | 40.0% | |
| TAAGGGGAAGAAGAAATTGC+AGG | + | chr3_3:86327970-86327989 | Msa0480760:intron | 40.0% | |
| ! | AAATTGGAGGAAGAGTGTGT+TGG | + | chr3_3:86328052-86328071 | Msa0480760:CDS | 40.0% |
| ! | AATTTACCAGAAGAGCGTGT+TGG | + | chr3_3:86328100-86328119 | Msa0480760:CDS | 40.0% |
| ! | CAAGAAAAGTGTGTTGGTGA+TGG | + | chr3_3:86328250-86328269 | Msa0480760:CDS | 40.0% |
| ! | AGGTGAGTGGTTTGATTTCT+TGG | + | chr3_3:86328357-86328376 | Msa0480760:CDS | 40.0% |
| GATACATTATGACGTACTCG+CGG | - | chr3_3:86328459-86328478 | None:intergenic | 40.0% | |
| GCATTAGCACAACTGTTGTT+AGG | + | chr3_3:86328543-86328562 | Msa0480760:three_prime_UTR | 40.0% | |
| ! | CGGTACAATATATTCTGGAG+AGG | - | chr3_3:86328618-86328637 | None:intergenic | 40.0% |
| ! | GGATTCGGGTTTGAATAGGT+GGG | - | chr3_3:86327024-86327043 | None:intergenic | 45.0% |
| ! | TGGATTCGGGTTTGAATAGG+TGG | - | chr3_3:86327025-86327044 | None:intergenic | 45.0% |
| !! | TGGTGGATTCGGGTTTGAAT+AGG | - | chr3_3:86327028-86327047 | None:intergenic | 45.0% |
| !!! | CCGATTTTGATGGTGGATTC+GGG | - | chr3_3:86327038-86327057 | None:intergenic | 45.0% |
| CCCGAATCCACCATCAAAAT+CGG | + | chr3_3:86327035-86327054 | Msa0480760:CDS | 45.0% | |
| ATCCACCATCAAAATCGGTC+GGG | + | chr3_3:86327040-86327059 | Msa0480760:CDS | 45.0% | |
| ! | AGGTGTTTGGTGGAAATACC+TGG | - | chr3_3:86327098-86327117 | None:intergenic | 45.0% |
| ! | ATGGATAGTGAGGTGTTTGG+TGG | - | chr3_3:86327108-86327127 | None:intergenic | 45.0% |
| !! | AAAGGAGTATTCGGAGGAAC+AGG | - | chr3_3:86327197-86327216 | None:intergenic | 45.0% |
| ! | ACTCCTTTTCATCTCAGCGA+TGG | + | chr3_3:86327209-86327228 | Msa0480760:CDS | 45.0% |
| GAACCATCGCTGAGATGAAA+AGG | - | chr3_3:86327215-86327234 | None:intergenic | 45.0% | |
| CAATCCCCAAAGTAACCCTA+CGG | + | chr3_3:86327280-86327299 | Msa0480760:CDS | 45.0% | |
| ! | GTTTCCGTAGGGTTACTTTG+GGG | - | chr3_3:86327287-86327306 | None:intergenic | 45.0% |
| ! | GGTTTCCGTAGGGTTACTTT+GGG | - | chr3_3:86327288-86327307 | None:intergenic | 45.0% |
| TGGTTTCCGTAGGGTTACTT+TGG | - | chr3_3:86327289-86327308 | None:intergenic | 45.0% | |
| TGAAGGTTACGAGGAATACG+CGG | + | chr3_3:86327450-86327469 | Msa0480760:CDS | 45.0% | |
| GGATGATGTGAAGGAGAAAG+TGG | + | chr3_3:86327604-86327623 | Msa0480760:intron | 45.0% | |
| TGATGTGAAGGAGAAAGTGG+AGG | + | chr3_3:86327607-86327626 | Msa0480760:intron | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr3_3:86327636-86327655 | Msa0480760:CDS | 45.0% | |
| GAGGTTTGTGATTCGAGCAA+TGG | + | chr3_3:86327686-86327705 | Msa0480760:CDS | 45.0% | |
| TTCGAGCAATGGAGATTTGG+AGG | + | chr3_3:86327697-86327716 | Msa0480760:CDS | 45.0% | |
| TCGAGCAATGGAGATTTGGA+GGG | + | chr3_3:86327698-86327717 | Msa0480760:CDS | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr3_3:86327636-86327655 | Msa0480760:CDS | 45.0% | |
| TGAGGGTGACAAGGAATTTG+AGG | + | chr3_3:86327756-86327775 | Msa0480760:intron | 45.0% | |
| TGGAGATTTGGATGGTGTGA+AGG | + | chr3_3:86327817-86327836 | Msa0480760:CDS | 45.0% | |
| TTTGGATGGTGTGAAGGAGA+AGG | + | chr3_3:86327823-86327842 | Msa0480760:CDS | 45.0% | |
| ! | TTTGAGCTTGGTGAATGGAG+TGG | + | chr3_3:86327913-86327932 | Msa0480760:CDS | 45.0% |
| ! | CAGGAAGAGATTGTTGGTGA+TGG | + | chr3_3:86327989-86328008 | Msa0480760:CDS | 45.0% |
| !! | GAGATTGTTGGTGATGGAGA+TGG | + | chr3_3:86327995-86328014 | Msa0480760:CDS | 45.0% |
| ! | AAATTACCGGAAGAGTGCGT+TGG | + | chr3_3:86328148-86328167 | Msa0480760:CDS | 45.0% |
| !! | AAGTGTGTTGGTGATGGAGA+TGG | + | chr3_3:86328256-86328275 | Msa0480760:CDS | 45.0% |
| ! | GGATGAGAATTGGCCTGATT+TGG | + | chr3_3:86328321-86328340 | Msa0480760:CDS | 45.0% |
| ! | TCTCTCGGCTTTTTGTCTCA+TGG | - | chr3_3:86328434-86328453 | None:intergenic | 45.0% |
| ! | GGATTCGGGTTTGAATAGGT+GGG | - | chr3_3:86327024-86327043 | None:intergenic | 45.0% |
| ! | TGGATTCGGGTTTGAATAGG+TGG | - | chr3_3:86327025-86327044 | None:intergenic | 45.0% |
| !! | TGGTGGATTCGGGTTTGAAT+AGG | - | chr3_3:86327028-86327047 | None:intergenic | 45.0% |
| !!! | CCGATTTTGATGGTGGATTC+GGG | - | chr3_3:86327038-86327057 | None:intergenic | 45.0% |
| CCCGAATCCACCATCAAAAT+CGG | + | chr3_3:86327035-86327054 | Msa0480760:CDS | 45.0% | |
| ATCCACCATCAAAATCGGTC+GGG | + | chr3_3:86327040-86327059 | Msa0480760:CDS | 45.0% | |
| ! | AGGTGTTTGGTGGAAATACC+TGG | - | chr3_3:86327098-86327117 | None:intergenic | 45.0% |
| ! | ATGGATAGTGAGGTGTTTGG+TGG | - | chr3_3:86327108-86327127 | None:intergenic | 45.0% |
| !! | AAAGGAGTATTCGGAGGAAC+AGG | - | chr3_3:86327197-86327216 | None:intergenic | 45.0% |
| ! | ACTCCTTTTCATCTCAGCGA+TGG | + | chr3_3:86327209-86327228 | Msa0480760:CDS | 45.0% |
| GAACCATCGCTGAGATGAAA+AGG | - | chr3_3:86327215-86327234 | None:intergenic | 45.0% | |
| CAATCCCCAAAGTAACCCTA+CGG | + | chr3_3:86327280-86327299 | Msa0480760:CDS | 45.0% | |
| ! | GTTTCCGTAGGGTTACTTTG+GGG | - | chr3_3:86327287-86327306 | None:intergenic | 45.0% |
| ! | GGTTTCCGTAGGGTTACTTT+GGG | - | chr3_3:86327288-86327307 | None:intergenic | 45.0% |
| TGGTTTCCGTAGGGTTACTT+TGG | - | chr3_3:86327289-86327308 | None:intergenic | 45.0% | |
| TGAAGGTTACGAGGAATACG+CGG | + | chr3_3:86327450-86327469 | Msa0480760:CDS | 45.0% | |
| GGATGATGTGAAGGAGAAAG+TGG | + | chr3_3:86327604-86327623 | Msa0480760:intron | 45.0% | |
| TGATGTGAAGGAGAAAGTGG+AGG | + | chr3_3:86327607-86327626 | Msa0480760:intron | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr3_3:86327636-86327655 | Msa0480760:CDS | 45.0% | |
| GAGGTTTGTGATTCGAGCAA+TGG | + | chr3_3:86327686-86327705 | Msa0480760:CDS | 45.0% | |
| TTCGAGCAATGGAGATTTGG+AGG | + | chr3_3:86327697-86327716 | Msa0480760:CDS | 45.0% | |
| TCGAGCAATGGAGATTTGGA+GGG | + | chr3_3:86327698-86327717 | Msa0480760:CDS | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr3_3:86327636-86327655 | Msa0480760:CDS | 45.0% | |
| TGAGGGTGACAAGGAATTTG+AGG | + | chr3_3:86327756-86327775 | Msa0480760:intron | 45.0% | |
| TGGAGATTTGGATGGTGTGA+AGG | + | chr3_3:86327817-86327836 | Msa0480760:CDS | 45.0% | |
| TTTGGATGGTGTGAAGGAGA+AGG | + | chr3_3:86327823-86327842 | Msa0480760:CDS | 45.0% | |
| ! | TTTGAGCTTGGTGAATGGAG+TGG | + | chr3_3:86327913-86327932 | Msa0480760:CDS | 45.0% |
| ! | CAGGAAGAGATTGTTGGTGA+TGG | + | chr3_3:86327989-86328008 | Msa0480760:CDS | 45.0% |
| !! | GAGATTGTTGGTGATGGAGA+TGG | + | chr3_3:86327995-86328014 | Msa0480760:CDS | 45.0% |
| ! | AAATTACCGGAAGAGTGCGT+TGG | + | chr3_3:86328148-86328167 | Msa0480760:CDS | 45.0% |
| !! | AAGTGTGTTGGTGATGGAGA+TGG | + | chr3_3:86328256-86328275 | Msa0480760:CDS | 45.0% |
| ! | GGATGAGAATTGGCCTGATT+TGG | + | chr3_3:86328321-86328340 | Msa0480760:CDS | 45.0% |
| ! | TCTCTCGGCTTTTTGTCTCA+TGG | - | chr3_3:86328434-86328453 | None:intergenic | 45.0% |
| CTCACACTTCAATTCCTCGC+CGG | + | chr3_3:86326981-86327000 | Msa0480760:CDS | 50.0% | |
| !! | GATGACCCGACCGATTTTGA+TGG | - | chr3_3:86327048-86327067 | None:intergenic | 50.0% |
| AACCTCCCCATCAAAGATCC+AGG | + | chr3_3:86327077-86327096 | Msa0480760:CDS | 50.0% | |
| TACCTGGATCTTTGATGGGG+AGG | - | chr3_3:86327082-86327101 | None:intergenic | 50.0% | |
| !! | CTCGTAACCTTCATCGGTTC+AGG | - | chr3_3:86327443-86327462 | None:intergenic | 50.0% |
| CTGAACCGATGAAGGTTACG+AGG | + | chr3_3:86327441-86327460 | Msa0480760:CDS | 50.0% | |
| ! | GGAGGGTGTGAAAGAGAAAG+TGG | + | chr3_3:86327715-86327734 | Msa0480760:CDS | 50.0% |
| GGGTGTGAAAGAGAAAGTGG+AGG | + | chr3_3:86327718-86327737 | Msa0480760:CDS | 50.0% | |
| CTTGTCATCCTCACACTCCT+CGG | - | chr3_3:86327857-86327876 | None:intergenic | 50.0% | |
| ! | AAAACAAGGGGCGGTGCTAA+GGG | + | chr3_3:86327953-86327972 | Msa0480760:intron | 50.0% |
| ! | GAGGAAGAGTGTGTTGGTGA+TGG | + | chr3_3:86328058-86328077 | Msa0480760:CDS | 50.0% |
| CTCACACTTCAATTCCTCGC+CGG | + | chr3_3:86326981-86327000 | Msa0480760:CDS | 50.0% | |
| !! | GATGACCCGACCGATTTTGA+TGG | - | chr3_3:86327048-86327067 | None:intergenic | 50.0% |
| AACCTCCCCATCAAAGATCC+AGG | + | chr3_3:86327077-86327096 | Msa0480760:CDS | 50.0% | |
| TACCTGGATCTTTGATGGGG+AGG | - | chr3_3:86327082-86327101 | None:intergenic | 50.0% | |
| !! | CTCGTAACCTTCATCGGTTC+AGG | - | chr3_3:86327443-86327462 | None:intergenic | 50.0% |
| CTGAACCGATGAAGGTTACG+AGG | + | chr3_3:86327441-86327460 | Msa0480760:CDS | 50.0% | |
| ! | GGAGGGTGTGAAAGAGAAAG+TGG | + | chr3_3:86327715-86327734 | Msa0480760:CDS | 50.0% |
| GGGTGTGAAAGAGAAAGTGG+AGG | + | chr3_3:86327718-86327737 | Msa0480760:CDS | 50.0% | |
| CTTGTCATCCTCACACTCCT+CGG | - | chr3_3:86327857-86327876 | None:intergenic | 50.0% | |
| ! | AAAACAAGGGGCGGTGCTAA+GGG | + | chr3_3:86327953-86327972 | Msa0480760:intron | 50.0% |
| ! | GAGGAAGAGTGTGTTGGTGA+TGG | + | chr3_3:86328058-86328077 | Msa0480760:CDS | 50.0% |
| GGTTTCGCCTTTACGTGGAC+CGG | - | chr3_3:86327003-86327022 | None:intergenic | 55.0% | |
| ! | AGGTGGGTTTCGCCTTTACG+TGG | - | chr3_3:86327008-86327027 | None:intergenic | 55.0% |
| !! | GACCCGACCGATTTTGATGG+TGG | - | chr3_3:86327045-86327064 | None:intergenic | 55.0% |
| AAAATCGGTCGGGTCATCCG+CGG | + | chr3_3:86327050-86327069 | Msa0480760:CDS | 55.0% | |
| GGATCGACCTGAACCGATGA+AGG | + | chr3_3:86327433-86327452 | Msa0480760:CDS | 55.0% | |
| TTACGAGGAATACGCGGAGC+AGG | + | chr3_3:86327456-86327475 | Msa0480760:CDS | 55.0% | |
| CGAAGAATGTGAGGGTGACG+AGG | + | chr3_3:86327525-86327544 | Msa0480760:CDS | 55.0% | |
| GGATGGTGTGAAGGAGAAGG+TGG | + | chr3_3:86327826-86327845 | Msa0480760:CDS | 55.0% | |
| TGGTGTGAAGGAGAAGGTGG+AGG | + | chr3_3:86327829-86327848 | Msa0480760:CDS | 55.0% | |
| ! | CGAGGAGTGTGAGGATGACA+AGG | + | chr3_3:86327855-86327874 | Msa0480760:CDS | 55.0% |
| ! | GAAAACAAGGGGCGGTGCTA+AGG | + | chr3_3:86327952-86327971 | Msa0480760:intron | 55.0% |
| ! | AAACAAGGGGCGGTGCTAAG+GGG | + | chr3_3:86327954-86327973 | Msa0480760:intron | 55.0% |
| CCATCACCAACACGCTCTTC+TGG | - | chr3_3:86328109-86328128 | None:intergenic | 55.0% | |
| ! | CCAGAAGAGCGTGTTGGTGA+TGG | + | chr3_3:86328106-86328125 | Msa0480760:CDS | 55.0% |
| TCGTCACCAACGCACTCTTC+CGG | - | chr3_3:86328157-86328176 | None:intergenic | 55.0% | |
| GGTTTCGCCTTTACGTGGAC+CGG | - | chr3_3:86327003-86327022 | None:intergenic | 55.0% | |
| ! | AGGTGGGTTTCGCCTTTACG+TGG | - | chr3_3:86327008-86327027 | None:intergenic | 55.0% |
| !! | GACCCGACCGATTTTGATGG+TGG | - | chr3_3:86327045-86327064 | None:intergenic | 55.0% |
| AAAATCGGTCGGGTCATCCG+CGG | + | chr3_3:86327050-86327069 | Msa0480760:CDS | 55.0% | |
| GGATCGACCTGAACCGATGA+AGG | + | chr3_3:86327433-86327452 | Msa0480760:CDS | 55.0% | |
| TTACGAGGAATACGCGGAGC+AGG | + | chr3_3:86327456-86327475 | Msa0480760:CDS | 55.0% | |
| CGAAGAATGTGAGGGTGACG+AGG | + | chr3_3:86327525-86327544 | Msa0480760:CDS | 55.0% | |
| GGATGGTGTGAAGGAGAAGG+TGG | + | chr3_3:86327826-86327845 | Msa0480760:CDS | 55.0% | |
| TGGTGTGAAGGAGAAGGTGG+AGG | + | chr3_3:86327829-86327848 | Msa0480760:CDS | 55.0% | |
| ! | CGAGGAGTGTGAGGATGACA+AGG | + | chr3_3:86327855-86327874 | Msa0480760:CDS | 55.0% |
| ! | GAAAACAAGGGGCGGTGCTA+AGG | + | chr3_3:86327952-86327971 | Msa0480760:intron | 55.0% |
| ! | AAACAAGGGGCGGTGCTAAG+GGG | + | chr3_3:86327954-86327973 | Msa0480760:intron | 55.0% |
| CCATCACCAACACGCTCTTC+TGG | - | chr3_3:86328109-86328128 | None:intergenic | 55.0% | |
| ! | CCAGAAGAGCGTGTTGGTGA+TGG | + | chr3_3:86328106-86328125 | Msa0480760:CDS | 55.0% |
| TCGTCACCAACGCACTCTTC+CGG | - | chr3_3:86328157-86328176 | None:intergenic | 55.0% | |
| TTCCTCGCCGGTCCACGTAA+AGG | + | chr3_3:86326993-86327012 | Msa0480760:CDS | 60.0% | |
| TGATGGGGAGGTTGTTGCCG+CGG | - | chr3_3:86327070-86327089 | None:intergenic | 60.0% | |
| GACGTACTCGCGGAGTCTCT+CGG | - | chr3_3:86328449-86328468 | None:intergenic | 60.0% | |
| TTCCTCGCCGGTCCACGTAA+AGG | + | chr3_3:86326993-86327012 | Msa0480760:CDS | 60.0% | |
| TGATGGGGAGGTTGTTGCCG+CGG | - | chr3_3:86327070-86327089 | None:intergenic | 60.0% | |
| GACGTACTCGCGGAGTCTCT+CGG | - | chr3_3:86328449-86328468 | None:intergenic | 60.0% | |
| AGGAGAAGGTGGAGGAGCCG+AGG | + | chr3_3:86327837-86327856 | Msa0480760:CDS | 65.0% | |
| ! | TGGAGGAGCCGAGGAGTGTG+AGG | + | chr3_3:86327846-86327865 | Msa0480760:CDS | 65.0% |
| AGGAGAAGGTGGAGGAGCCG+AGG | + | chr3_3:86327837-86327856 | Msa0480760:CDS | 65.0% | |
| ! | TGGAGGAGCCGAGGAGTGTG+AGG | + | chr3_3:86327846-86327865 | Msa0480760:CDS | 65.0% |
| CGCCTTTACGTGGACCGGCG+AGG | - | chr3_3:86326998-86327017 | None:intergenic | 70.0% | |
| CGCCTTTACGTGGACCGGCG+AGG | - | chr3_3:86326998-86327017 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 86326954 | 86328738 | 86326954 | ID=Msa0480760;Name=Msa0480760 |
| chr3_3 | mRNA | 86326954 | 86328738 | 86326954 | ID=Msa0480760-mRNA-1;Parent=Msa0480760;Name=Msa0480760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.2|0.16|1|0|0|6|225|485 |
| chr3_3 | exon | 86326954 | 86327137 | 86326954 | ID=Msa0480760-mRNA-1:exon:24875;Parent=Msa0480760-mRNA-1 |
| chr3_3 | exon | 86327156 | 86327376 | 86327156 | ID=Msa0480760-mRNA-1:exon:24876;Parent=Msa0480760-mRNA-1 |
| chr3_3 | exon | 86327383 | 86327610 | 86327383 | ID=Msa0480760-mRNA-1:exon:24877;Parent=Msa0480760-mRNA-1 |
| chr3_3 | exon | 86327617 | 86327760 | 86327617 | ID=Msa0480760-mRNA-1:exon:24878;Parent=Msa0480760-mRNA-1 |
| chr3_3 | exon | 86327800 | 86327940 | 86327800 | ID=Msa0480760-mRNA-1:exon:24879;Parent=Msa0480760-mRNA-1 |
| chr3_3 | exon | 86327974 | 86328738 | 86327974 | ID=Msa0480760-mRNA-1:exon:24880;Parent=Msa0480760-mRNA-1 |
| chr3_3 | CDS | 86326954 | 86327137 | 86326954 | ID=Msa0480760-mRNA-1:cds;Parent=Msa0480760-mRNA-1 |
| chr3_3 | CDS | 86327156 | 86327376 | 86327156 | ID=Msa0480760-mRNA-1:cds;Parent=Msa0480760-mRNA-1 |
| chr3_3 | CDS | 86327383 | 86327610 | 86327383 | ID=Msa0480760-mRNA-1:cds;Parent=Msa0480760-mRNA-1 |
| chr3_3 | CDS | 86327617 | 86327760 | 86327617 | ID=Msa0480760-mRNA-1:cds;Parent=Msa0480760-mRNA-1 |
| chr3_3 | CDS | 86327800 | 86327940 | 86327800 | ID=Msa0480760-mRNA-1:cds;Parent=Msa0480760-mRNA-1 |
| chr3_3 | CDS | 86327974 | 86328513 | 86327974 | ID=Msa0480760-mRNA-1:cds;Parent=Msa0480760-mRNA-1 |
| chr3_3 | three_prime_UTR | 86328514 | 86328738 | 86328514 | ID=Msa0480760-mRNA-1:three_prime_utr;Parent=Msa0480760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
