Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945220 | XP_013456939.2 | 82.274 | 519 | 54 | 8 | 1 | 485 | 1 | 515 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945220 | sp|O23305|Y4449_ARATH | 53.333 | 105 | 43 | 1 | 5 | 103 | 1 | 105 | 2.10e-27 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100600 | Msa0945220 | 0.805885 | 1.075357e-49 | -8.615850e-47 |
| Msa0737020 | Msa0945220 | 0.800125 | 1.668831e-48 | -8.615850e-47 |
| Msa0480760 | Msa0945220 | 0.991596 | 1.696486e-188 | -8.615850e-47 |
| Msa0945220 | Msa1038860 | 0.800060 | 1.720148e-48 | -8.615850e-47 |
| Msa0945220 | Msa1308860 | 0.811679 | 6.205044e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945220 | MtrunA17_Chr4g0046411 | 82.274 | 519 | 54 | 8 | 1 | 485 | 1 | 515 | 0.0 | 767 |
| Msa0945220 | MtrunA17_Chr8g0367734 | 81.888 | 519 | 56 | 8 | 1 | 485 | 26 | 540 | 0.0 | 764 |
| Msa0945220 | MtrunA17_Chr3g0127721 | 74.286 | 385 | 62 | 8 | 127 | 485 | 17 | 390 | 8.35e-170 | 483 |
| Msa0945220 | MtrunA17_Chr4g0046421 | 61.594 | 138 | 44 | 4 | 1 | 131 | 1 | 136 | 2.27e-44 | 157 |
| Msa0945220 | MtrunA17_Chr4g0046421 | 73.404 | 94 | 22 | 2 | 390 | 482 | 183 | 274 | 1.14e-34 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945220 | AT4G14490.1 | 53.333 | 105 | 43 | 1 | 5 | 103 | 1 | 105 | 2.14e-28 | 116 |
| Msa0945220 | AT3G02400.1 | 56.311 | 103 | 39 | 1 | 6 | 102 | 2 | 104 | 2.50e-28 | 119 |
| Msa0945220 | AT3G02400.2 | 56.311 | 103 | 39 | 1 | 6 | 102 | 2 | 104 | 3.85e-28 | 117 |
Find 139 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTAAAAGTGTTAAATTT+AGG | 0.113256 | 6_3:+23956748 | Msa0945220:CDS |
| TACTAAAAGTGTTAAATTTA+GGG | 0.234323 | 6_3:+23956749 | Msa0945220:CDS |
| TGATTCTGCTGATGTGAATT+TGG | 0.240026 | 6_3:+23956890 | Msa0945220:CDS |
| GATTTGGAGAAGATGAATTT+AGG | 0.263231 | 6_3:+23957737 | Msa0945220:CDS |
| CATAGGTTTATCTTCTACTA+TGG | 0.263666 | 6_3:-23956706 | None:intergenic |
| GTTTCATCATGTATCTGTTT+TGG | 0.281623 | 6_3:-23957791 | None:intergenic |
| AGGTGAGTGGTTTGATTTCT+TGG | 0.284800 | 6_3:+23957757 | Msa0945220:CDS |
| TGATTCGAGTAATGGTAATT+TGG | 0.299985 | 6_3:+23956983 | Msa0945220:CDS |
| CTCGTAACCTTCATCGGTTC+AGG | 0.305130 | 6_3:-23956840 | None:intergenic |
| TGAATTGAGTGTTGGAGATT+TGG | 0.321055 | 6_3:+23957205 | Msa0945220:CDS |
| GGTTTCCGTAGGGTTACTTT+GGG | 0.323544 | 6_3:-23956685 | None:intergenic |
| CTCACTATCCATTTCAATTC+CGG | 0.326349 | 6_3:+23956516 | Msa0945220:CDS |
| TGCTAAAGGAAAGGAGAAAT+TGG | 0.331726 | 6_3:+23957436 | Msa0945220:CDS |
| GGATGAGAATTGGCCTGATT+TGG | 0.337680 | 6_3:+23957721 | Msa0945220:CDS |
| TGATTCGAGCAATGGAGATT+TGG | 0.343124 | 6_3:+23957094 | Msa0945220:CDS |
| ACAAGGAATGCGAAGAATAA+AGG | 0.353579 | 6_3:+23957272 | Msa0945220:CDS |
| TCCAATTACCGGAATTGAAA+TGG | 0.367892 | 6_3:-23956524 | None:intergenic |
| AAGTGTTAAATTTAGGGTTC+CGG | 0.374553 | 6_3:+23956755 | Msa0945220:CDS |
| AGTAACTTCACCGATCTTAA+TGG | 0.379519 | 6_3:-23956637 | None:intergenic |
| CAAGGAATGCGAAGAATAAA+GGG | 0.387553 | 6_3:+23957273 | Msa0945220:CDS |
| GCATTAGCACAACTGTTGTT+AGG | 0.389065 | 6_3:+23957943 | Msa0945220:three_prime_UTR |
| TGGTGGATTCGGGTTTGAAT+AGG | 0.396059 | 6_3:-23956425 | None:intergenic |
| ATTTGAATGGGGATGAGAAT+TGG | 0.396400 | 6_3:+23957711 | Msa0945220:CDS |
| TCGTCACCAACGCACTCTTC+CGG | 0.397410 | 6_3:-23957554 | None:intergenic |
| AAATTCATCTTCTCCAAATC+AGG | 0.398213 | 6_3:-23957734 | None:intergenic |
| AATAGCGGTACAATATATTC+TGG | 0.400231 | 6_3:-23958020 | None:intergenic |
| CCATCACCAACACGCTCTTC+TGG | 0.402421 | 6_3:-23957506 | None:intergenic |
| TGGATTCGGGTTTGAATAGG+TGG | 0.412924 | 6_3:-23956422 | None:intergenic |
| TGGTTTCCGTAGGGTTACTT+TGG | 0.426738 | 6_3:-23956686 | None:intergenic |
| CTGAGATGAAAAGGAGTATT+CGG | 0.427337 | 6_3:-23956603 | None:intergenic |
| AAAGGAGTATTCGGAGGAAC+AGG | 0.428281 | 6_3:-23956594 | None:intergenic |
| GGAAATACCTGGATCTTTGA+TGG | 0.433151 | 6_3:-23956484 | None:intergenic |
| AGTAGAAGATAAACCTATGA+AGG | 0.445778 | 6_3:+23956710 | Msa0945220:CDS |
| CCCGAATCCACCATCAAAAT+CGG | 0.448567 | 6_3:+23956435 | Msa0945220:CDS |
| TAAAGAGAAGGAGAAATTAC+CGG | 0.453884 | 6_3:+23957535 | Msa0945220:CDS |
| GACGTACTCGCGGAGTCTCT+CGG | 0.467250 | 6_3:-23957846 | None:intergenic |
| GGAGGGTGTGAAAGAGAAAG+TGG | 0.475266 | 6_3:+23957115 | Msa0945220:CDS |
| CCAGAAGAGCGTGTTGGTGA+TGG | 0.475527 | 6_3:+23957506 | Msa0945220:CDS |
| GAATAAAGGGGTTGTGATTG+AGG | 0.479194 | 6_3:+23957286 | Msa0945220:CDS |
| GAAGATTTGAGCTTGGTGAA+TGG | 0.484158 | 6_3:+23957308 | Msa0945220:CDS |
| ATTGATGAAGTTAACAAGGA+TGG | 0.484506 | 6_3:-23956661 | None:intergenic |
| TTACGAGGAATACGCGGAGC+AGG | 0.485036 | 6_3:+23956856 | Msa0945220:CDS |
| GAACCATCGCTGAGATGAAA+AGG | 0.497457 | 6_3:-23956612 | None:intergenic |
| TCTTCTACTATGGTTTCCGT+AGG | 0.497993 | 6_3:-23956696 | None:intergenic |
| GGATTCGGGTTTGAATAGGT+GGG | 0.504613 | 6_3:-23956421 | None:intergenic |
| GGTTTCGCCTTTACGTGGAC+CGG | 0.505011 | 6_3:-23956400 | None:intergenic |
| AGGAATTGAAGTGTGAGAGA+TGG | 0.506082 | 6_3:-23956375 | None:intergenic |
| GAGATATGTGATTCGAGTAA+TGG | 0.509014 | 6_3:+23956975 | Msa0945220:CDS |
| AAAACAGATACATGATGAAA+CGG | 0.510214 | 6_3:+23957793 | Msa0945220:CDS |
| GAGGTTTGTGATTCGAGCAA+TGG | 0.513584 | 6_3:+23957086 | Msa0945220:CDS |
| TAAGGGGAAGAAGAAATTGC+AGG | 0.513857 | 6_3:+23957370 | Msa0945220:intron |
| ATGTATCAGAATCAGAAAGC+TGG | 0.516426 | 6_3:+23957872 | Msa0945220:CDS |
| TTCGAGCAATGGAGATTTGG+AGG | 0.519234 | 6_3:+23957097 | Msa0945220:CDS |
| CTTGTCATCCTCACACTCCT+CGG | 0.521001 | 6_3:-23957254 | None:intergenic |
| GAATAAGAAGAATACGGTTG+AGG | 0.521957 | 6_3:+23957067 | Msa0945220:CDS |
| TTCCTCGCCGGTCCACGTAA+AGG | 0.523068 | 6_3:+23956393 | Msa0945220:CDS |
| TTCGAAGAATAAGAAGAATA+CGG | 0.526530 | 6_3:+23957061 | Msa0945220:CDS |
| GAGGAAGAGTGTGTTGGTGA+TGG | 0.527304 | 6_3:+23957458 | Msa0945220:CDS |
| AGGTGTTTGGTGGAAATACC+TGG | 0.527977 | 6_3:-23956495 | None:intergenic |
| GTATTCCTCGTAACCTTCAT+CGG | 0.528796 | 6_3:-23956846 | None:intergenic |
| GAAATACCTGGATCTTTGAT+GGG | 0.532079 | 6_3:-23956483 | None:intergenic |
| CAGGAAGAGATTGTTGGTGA+TGG | 0.532227 | 6_3:+23957389 | Msa0945220:CDS |
| AACCTCCCCATCAAAGATCC+AGG | 0.532781 | 6_3:+23956477 | Msa0945220:CDS |
| AATAAGAATTGAAAGATGCA+AGG | 0.535063 | 6_3:-23958091 | None:intergenic |
| GAGAATTGTGATGATGCTAA+AGG | 0.541257 | 6_3:+23957422 | Msa0945220:CDS |
| ATAAGAATTGAAAGATGCAA+GGG | 0.542131 | 6_3:-23958090 | None:intergenic |
| ATCCACCATCAAAATCGGTC+GGG | 0.543736 | 6_3:+23956440 | Msa0945220:CDS |
| GAGGTTTCTGAATTGAGTGT+TGG | 0.543871 | 6_3:+23957197 | Msa0945220:intron |
| AAATTGCAGGAAGAGATTGT+TGG | 0.543947 | 6_3:+23957383 | Msa0945220:CDS |
| TGGTGTGAAGGAGAAGGTGG+AGG | 0.547202 | 6_3:+23957229 | Msa0945220:CDS |
| AAGTAAAATTGTTATTAACA+AGG | 0.548220 | 6_3:-23958116 | None:intergenic |
| CTTCTACTATGGTTTCCGTA+GGG | 0.549514 | 6_3:-23956695 | None:intergenic |
| ATGGATAGTGAGGTGTTTGG+TGG | 0.549947 | 6_3:-23956505 | None:intergenic |
| TGATGGAGATGATAAAGAAA+AGG | 0.550272 | 6_3:+23957475 | Msa0945220:CDS |
| CAAGAAAAGTGTGTTGGTGA+TGG | 0.550772 | 6_3:+23957650 | Msa0945220:CDS |
| TGATGGAGAAGATAAAGAGA+AGG | 0.555886 | 6_3:+23957523 | Msa0945220:CDS |
| TGATGAAGAAGATAAAGAGA+AGG | 0.556018 | 6_3:+23957619 | Msa0945220:CDS |
| GGATCGACCTGAACCGATGA+AGG | 0.556237 | 6_3:+23956833 | Msa0945220:CDS |
| AACAGGTTTAGTGTCTAAAA+CGG | 0.560608 | 6_3:-23956577 | None:intergenic |
| TGGAGGAGCCGAGGAGTGTG+AGG | 0.560610 | 6_3:+23957246 | Msa0945220:CDS |
| TACCTGGATCTTTGATGGGG+AGG | 0.560776 | 6_3:-23956479 | None:intergenic |
| GATTGAGGAAGATTTGAGCT+TGG | 0.563165 | 6_3:+23957301 | Msa0945220:CDS |
| AGGAGAAGGTGGAGGAGCCG+AGG | 0.563651 | 6_3:+23957237 | Msa0945220:CDS |
| GAGATTGTTGGTGATGGAGA+TGG | 0.565638 | 6_3:+23957395 | Msa0945220:CDS |
| TGGAGATTTGGATGGTGTGA+AGG | 0.565692 | 6_3:+23957217 | Msa0945220:CDS |
| AGAAGATGAATTTAGGTGAG+TGG | 0.565794 | 6_3:+23957744 | Msa0945220:CDS |
| GGATGATGTGAAGGAGAAAG+TGG | 0.566386 | 6_3:+23957004 | Msa0945220:intron |
| TTGTGATGATGCTAAAGGAA+AGG | 0.566732 | 6_3:+23957427 | Msa0945220:CDS |
| TTGAATGGTGATGATGAAGA+TGG | 0.567085 | 6_3:+23956804 | Msa0945220:CDS |
| AGGTGGGTTTCGCCTTTACG+TGG | 0.568734 | 6_3:-23956405 | None:intergenic |
| GGATGGTGTGAAGGAGAAGG+TGG | 0.569564 | 6_3:+23957226 | Msa0945220:CDS |
| GAAATGGATAGTGAGGTGTT+TGG | 0.570327 | 6_3:-23956508 | None:intergenic |
| GACGAAGATCAAATGTTGAA+TGG | 0.571226 | 6_3:+23956789 | Msa0945220:CDS |
| CTCACACTTCAATTCCTCGC+CGG | 0.576251 | 6_3:+23956381 | Msa0945220:CDS |
| AGAAGAATGTGAGGGTGACA+AGG | 0.576462 | 6_3:+23957036 | Msa0945220:CDS |
| AAGTGTGTTGGTGATGGAGA+TGG | 0.577597 | 6_3:+23957656 | Msa0945220:CDS |
| TAAAGGAAAGGAGAAATTGG+AGG | 0.581664 | 6_3:+23957439 | Msa0945220:CDS |
| CGAGGAGTGTGAGGATGACA+AGG | 0.584161 | 6_3:+23957255 | Msa0945220:CDS |
| CGAAGAATGTGAGGGTGACG+AGG | 0.587389 | 6_3:+23956925 | Msa0945220:CDS |
| TTGAGTGTTGGAGATTTGGA+TGG | 0.587988 | 6_3:+23957209 | Msa0945220:CDS |
| AATTGAAGTGTGAGAGATGG+AGG | 0.588847 | 6_3:-23956372 | None:intergenic |
| GGTACAATATATTCTGGAGA+GGG | 0.589097 | 6_3:-23958014 | None:intergenic |
| GGGTGTGAAAGAGAAAGTGG+AGG | 0.589644 | 6_3:+23957118 | Msa0945220:CDS |
| AAATCACAAGAAAAGTGTGT+TGG | 0.591822 | 6_3:+23957644 | Msa0945220:CDS |
| TTTGGATGGTGTGAAGGAGA+AGG | 0.592111 | 6_3:+23957223 | Msa0945220:CDS |
| CGCCTTTACGTGGACCGGCG+AGG | 0.592205 | 6_3:-23956395 | None:intergenic |
| CGGAATTGAAATGGATAGTG+AGG | 0.592334 | 6_3:-23956515 | None:intergenic |
| GGGGATTGATGAAGTTAACA+AGG | 0.594113 | 6_3:-23956665 | None:intergenic |
| TTTGAGCTTGGTGAATGGAG+TGG | 0.602709 | 6_3:+23957313 | Msa0945220:CDS |
| TGATGATGAAGATGGAATTG+TGG | 0.602937 | 6_3:+23956812 | Msa0945220:CDS |
| AATTTACCAGAAGAGCGTGT+TGG | 0.606294 | 6_3:+23957500 | Msa0945220:CDS |
| ACAGATCTCGATTCTTCTAA+CGG | 0.609144 | 6_3:+23956552 | Msa0945220:intron |
| AAATTACCGGAAGAGTGCGT+TGG | 0.609976 | 6_3:+23957548 | Msa0945220:CDS |
| GTAGAAGATAAACCTATGAA+GGG | 0.610432 | 6_3:+23956711 | Msa0945220:CDS |
| AATCCACCATCAAAATCGGT+CGG | 0.610443 | 6_3:+23956439 | Msa0945220:CDS |
| CGGTACAATATATTCTGGAG+AGG | 0.613303 | 6_3:-23958015 | None:intergenic |
| GATGGTTCCACCATTAAGAT+CGG | 0.618053 | 6_3:+23956627 | Msa0945220:CDS |
| TCGAGCAATGGAGATTTGGA+GGG | 0.619860 | 6_3:+23957098 | Msa0945220:CDS |
| GTTTCCGTAGGGTTACTTTG+GGG | 0.622007 | 6_3:-23956684 | None:intergenic |
| CAATCCCCAAAGTAACCCTA+CGG | 0.625349 | 6_3:+23956680 | Msa0945220:CDS |
| AGGAAGTGAAGAAGAATGTG+AGG | 0.626445 | 6_3:+23957027 | Msa0945220:CDS |
| AGGAAGTGAAGAAGAATGTG+AGG | 0.626445 | 6_3:+23957138 | Msa0945220:CDS |
| CTGAACCGATGAAGGTTACG+AGG | 0.630587 | 6_3:+23956841 | Msa0945220:CDS |
| TGATGGGGAGGTTGTTGCCG+CGG | 0.633183 | 6_3:-23956467 | None:intergenic |
| AACTTCACCGATCTTAATGG+TGG | 0.642883 | 6_3:-23956634 | None:intergenic |
| CTGTAGTATCGAAGAATGTG+AGG | 0.646172 | 6_3:+23956916 | Msa0945220:CDS |
| CTACATATACTAGCATTCAG+TGG | 0.652902 | 6_3:-23957900 | None:intergenic |
| TGAAGGTTACGAGGAATACG+CGG | 0.654682 | 6_3:+23956850 | Msa0945220:CDS |
| AAAATCGGTCGGGTCATCCG+CGG | 0.657840 | 6_3:+23956450 | Msa0945220:CDS |
| TGATGTGAAGGAGAAAGTGG+AGG | 0.668251 | 6_3:+23957007 | Msa0945220:intron |
| AAATACCTGGATCTTTGATG+GGG | 0.678030 | 6_3:-23956482 | None:intergenic |
| AGATGAAAAGGAGTATTCGG+AGG | 0.680462 | 6_3:-23956600 | None:intergenic |
| GGAAGTGAAGAAGAATGTGA+GGG | 0.687843 | 6_3:+23957028 | Msa0945220:CDS |
| GGAAGTGAAGAAGAATGTGA+GGG | 0.687843 | 6_3:+23957139 | Msa0945220:CDS |
| TTCACTACAAGCAATAATAG+CGG | 0.701182 | 6_3:-23958035 | None:intergenic |
| AAGGAATGCGAAGAATAAAG+GGG | 0.713160 | 6_3:+23957274 | Msa0945220:CDS |
| AAATTGGAGGAAGAGTGTGT+TGG | 0.722760 | 6_3:+23957452 | Msa0945220:CDS |
| GATACATTATGACGTACTCG+CGG | 0.753024 | 6_3:-23957856 | None:intergenic |
| TGTAGTATCGAAGAATGTGA+GGG | 0.756754 | 6_3:+23956917 | Msa0945220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTAAAAGTGTTAAATTTA+GGG | + | chr6_3:23956749-23956768 | Msa0945220:CDS | 15.0% |
| !!! | AAGTAAAATTGTTATTAACA+AGG | - | chr6_3:23958119-23958138 | None:intergenic | 15.0% |
| !!! | TACTAAAAGTGTTAAATTTA+GGG | + | chr6_3:23956749-23956768 | Msa0945220:CDS | 15.0% |
| !!! | AAGTAAAATTGTTATTAACA+AGG | - | chr6_3:23958119-23958138 | None:intergenic | 15.0% |
| !!! | GTACTAAAAGTGTTAAATTT+AGG | + | chr6_3:23956748-23956767 | Msa0945220:CDS | 20.0% |
| !! | GAGGAATAAGATAAATAAAA+TGG | + | chr6_3:23957175-23957194 | Msa0945220:intron | 20.0% |
| !! | GAATAAGATAAATAAAATGG+AGG | + | chr6_3:23957178-23957197 | Msa0945220:intron | 20.0% |
| !! | TAAAGAAAAAGAGAAATTAC+AGG | + | chr6_3:23957583-23957602 | Msa0945220:CDS | 20.0% |
| !! | AAAGAAAAAGAGAATTTGAA+TGG | + | chr6_3:23957698-23957717 | Msa0945220:CDS | 20.0% |
| !! | AAGAAAAAGAGAATTTGAAT+GGG | + | chr6_3:23957699-23957718 | Msa0945220:CDS | 20.0% |
| !!! | GTACTAAAAGTGTTAAATTT+AGG | + | chr6_3:23956748-23956767 | Msa0945220:CDS | 20.0% |
| !! | GAGGAATAAGATAAATAAAA+TGG | + | chr6_3:23957175-23957194 | Msa0945220:intron | 20.0% |
| !! | GAATAAGATAAATAAAATGG+AGG | + | chr6_3:23957178-23957197 | Msa0945220:intron | 20.0% |
| !! | TAAAGAAAAAGAGAAATTAC+AGG | + | chr6_3:23957583-23957602 | Msa0945220:CDS | 20.0% |
| !! | AAAGAAAAAGAGAATTTGAA+TGG | + | chr6_3:23957698-23957717 | Msa0945220:CDS | 20.0% |
| !! | AAGAAAAAGAGAATTTGAAT+GGG | + | chr6_3:23957699-23957718 | Msa0945220:CDS | 20.0% |
| ! | TTCGAAGAATAAGAAGAATA+CGG | + | chr6_3:23957061-23957080 | Msa0945220:CDS | 25.0% |
| ! | ATGTTGAGAAAAAGAAAACA+AGG | + | chr6_3:23957339-23957358 | Msa0945220:intron | 25.0% |
| ! | TGTTGAGAAAAAGAAAACAA+GGG | + | chr6_3:23957340-23957359 | Msa0945220:intron | 25.0% |
| ! | AGAAAAAGAGAATTTGAATG+GGG | + | chr6_3:23957700-23957719 | Msa0945220:CDS | 25.0% |
| ! | AAAACAGATACATGATGAAA+CGG | + | chr6_3:23957793-23957812 | Msa0945220:CDS | 25.0% |
| ! | ATAAGAATTGAAAGATGCAA+GGG | - | chr6_3:23958093-23958112 | None:intergenic | 25.0% |
| ! | AATAAGAATTGAAAGATGCA+AGG | - | chr6_3:23958094-23958113 | None:intergenic | 25.0% |
| ! | TTCGAAGAATAAGAAGAATA+CGG | + | chr6_3:23957061-23957080 | Msa0945220:CDS | 25.0% |
| ! | ATGTTGAGAAAAAGAAAACA+AGG | + | chr6_3:23957339-23957358 | Msa0945220:intron | 25.0% |
| ! | TGTTGAGAAAAAGAAAACAA+GGG | + | chr6_3:23957340-23957359 | Msa0945220:intron | 25.0% |
| ! | AGAAAAAGAGAATTTGAATG+GGG | + | chr6_3:23957700-23957719 | Msa0945220:CDS | 25.0% |
| ! | AAAACAGATACATGATGAAA+CGG | + | chr6_3:23957793-23957812 | Msa0945220:CDS | 25.0% |
| ! | ATAAGAATTGAAAGATGCAA+GGG | - | chr6_3:23958093-23958112 | None:intergenic | 25.0% |
| ! | AATAAGAATTGAAAGATGCA+AGG | - | chr6_3:23958094-23958113 | None:intergenic | 25.0% |
| AACAGGTTTAGTGTCTAAAA+CGG | - | chr6_3:23956580-23956599 | None:intergenic | 30.0% | |
| ATTGATGAAGTTAACAAGGA+TGG | - | chr6_3:23956664-23956683 | None:intergenic | 30.0% | |
| CATAGGTTTATCTTCTACTA+TGG | - | chr6_3:23956709-23956728 | None:intergenic | 30.0% | |
| AGTAGAAGATAAACCTATGA+AGG | + | chr6_3:23956710-23956729 | Msa0945220:CDS | 30.0% | |
| GTAGAAGATAAACCTATGAA+GGG | + | chr6_3:23956711-23956730 | Msa0945220:CDS | 30.0% | |
| AAACCTATGAAGGGTAAAAA+AGG | + | chr6_3:23956720-23956739 | Msa0945220:CDS | 30.0% | |
| AACCTATGAAGGGTAAAAAA+GGG | + | chr6_3:23956721-23956740 | Msa0945220:CDS | 30.0% | |
| ! | AAGTGTTAAATTTAGGGTTC+CGG | + | chr6_3:23956755-23956774 | Msa0945220:CDS | 30.0% |
| TGATTCGAGTAATGGTAATT+TGG | + | chr6_3:23956983-23957002 | Msa0945220:CDS | 30.0% | |
| GTTGAGAAAAAGAAAACAAG+GGG | + | chr6_3:23957341-23957360 | Msa0945220:intron | 30.0% | |
| TGATGGAGATGATAAAGAAA+AGG | + | chr6_3:23957475-23957494 | Msa0945220:CDS | 30.0% | |
| TAAAGAGAAGGAGAAATTAC+CGG | + | chr6_3:23957535-23957554 | Msa0945220:CDS | 30.0% | |
| TGATGAAGAAGATAAAGAGA+AGG | + | chr6_3:23957619-23957638 | Msa0945220:CDS | 30.0% | |
| ! | AAATCACAAGAAAAGTGTGT+TGG | + | chr6_3:23957644-23957663 | Msa0945220:CDS | 30.0% |
| AAATTCATCTTCTCCAAATC+AGG | - | chr6_3:23957737-23957756 | None:intergenic | 30.0% | |
| GATTTGGAGAAGATGAATTT+AGG | + | chr6_3:23957737-23957756 | Msa0945220:CDS | 30.0% | |
| ! | GTTTCATCATGTATCTGTTT+TGG | - | chr6_3:23957794-23957813 | None:intergenic | 30.0% |
| AATAGCGGTACAATATATTC+TGG | - | chr6_3:23958023-23958042 | None:intergenic | 30.0% | |
| TTCACTACAAGCAATAATAG+CGG | - | chr6_3:23958038-23958057 | None:intergenic | 30.0% | |
| AACAGGTTTAGTGTCTAAAA+CGG | - | chr6_3:23956580-23956599 | None:intergenic | 30.0% | |
| ATTGATGAAGTTAACAAGGA+TGG | - | chr6_3:23956664-23956683 | None:intergenic | 30.0% | |
| CATAGGTTTATCTTCTACTA+TGG | - | chr6_3:23956709-23956728 | None:intergenic | 30.0% | |
| AGTAGAAGATAAACCTATGA+AGG | + | chr6_3:23956710-23956729 | Msa0945220:CDS | 30.0% | |
| GTAGAAGATAAACCTATGAA+GGG | + | chr6_3:23956711-23956730 | Msa0945220:CDS | 30.0% | |
| AAACCTATGAAGGGTAAAAA+AGG | + | chr6_3:23956720-23956739 | Msa0945220:CDS | 30.0% | |
| AACCTATGAAGGGTAAAAAA+GGG | + | chr6_3:23956721-23956740 | Msa0945220:CDS | 30.0% | |
| ! | AAGTGTTAAATTTAGGGTTC+CGG | + | chr6_3:23956755-23956774 | Msa0945220:CDS | 30.0% |
| TGATTCGAGTAATGGTAATT+TGG | + | chr6_3:23956983-23957002 | Msa0945220:CDS | 30.0% | |
| GTTGAGAAAAAGAAAACAAG+GGG | + | chr6_3:23957341-23957360 | Msa0945220:intron | 30.0% | |
| TGATGGAGATGATAAAGAAA+AGG | + | chr6_3:23957475-23957494 | Msa0945220:CDS | 30.0% | |
| TAAAGAGAAGGAGAAATTAC+CGG | + | chr6_3:23957535-23957554 | Msa0945220:CDS | 30.0% | |
| TGATGAAGAAGATAAAGAGA+AGG | + | chr6_3:23957619-23957638 | Msa0945220:CDS | 30.0% | |
| ! | AAATCACAAGAAAAGTGTGT+TGG | + | chr6_3:23957644-23957663 | Msa0945220:CDS | 30.0% |
| AAATTCATCTTCTCCAAATC+AGG | - | chr6_3:23957737-23957756 | None:intergenic | 30.0% | |
| GATTTGGAGAAGATGAATTT+AGG | + | chr6_3:23957737-23957756 | Msa0945220:CDS | 30.0% | |
| ! | GTTTCATCATGTATCTGTTT+TGG | - | chr6_3:23957794-23957813 | None:intergenic | 30.0% |
| AATAGCGGTACAATATATTC+TGG | - | chr6_3:23958023-23958042 | None:intergenic | 30.0% | |
| TTCACTACAAGCAATAATAG+CGG | - | chr6_3:23958038-23958057 | None:intergenic | 30.0% | |
| AAATACCTGGATCTTTGATG+GGG | - | chr6_3:23956485-23956504 | None:intergenic | 35.0% | |
| GAAATACCTGGATCTTTGAT+GGG | - | chr6_3:23956486-23956505 | None:intergenic | 35.0% | |
| CTCACTATCCATTTCAATTC+CGG | + | chr6_3:23956516-23956535 | Msa0945220:CDS | 35.0% | |
| TCCATTTCAATTCCGGTAAT+TGG | + | chr6_3:23956523-23956542 | Msa0945220:intron | 35.0% | |
| TCCAATTACCGGAATTGAAA+TGG | - | chr6_3:23956527-23956546 | None:intergenic | 35.0% | |
| ATCTGTGAGAATCCAATTAC+CGG | - | chr6_3:23956538-23956557 | None:intergenic | 35.0% | |
| ACAGATCTCGATTCTTCTAA+CGG | + | chr6_3:23956552-23956571 | Msa0945220:intron | 35.0% | |
| !! | CTGAGATGAAAAGGAGTATT+CGG | - | chr6_3:23956606-23956625 | None:intergenic | 35.0% |
| AGTAACTTCACCGATCTTAA+TGG | - | chr6_3:23956640-23956659 | None:intergenic | 35.0% | |
| !!! | TTCCCTTTTTTACCCTTCAT+AGG | - | chr6_3:23956726-23956745 | None:intergenic | 35.0% |
| GACGAAGATCAAATGTTGAA+TGG | + | chr6_3:23956789-23956808 | Msa0945220:CDS | 35.0% | |
| ! | TTGAATGGTGATGATGAAGA+TGG | + | chr6_3:23956804-23956823 | Msa0945220:CDS | 35.0% |
| ! | TGATGATGAAGATGGAATTG+TGG | + | chr6_3:23956812-23956831 | Msa0945220:CDS | 35.0% |
| TGATTCTGCTGATGTGAATT+TGG | + | chr6_3:23956890-23956909 | Msa0945220:CDS | 35.0% | |
| ! | TGTAGTATCGAAGAATGTGA+GGG | + | chr6_3:23956917-23956936 | Msa0945220:CDS | 35.0% |
| GAGATATGTGATTCGAGTAA+TGG | + | chr6_3:23956975-23956994 | Msa0945220:CDS | 35.0% | |
| TGGTAATTTGGATGATGTGA+AGG | + | chr6_3:23956995-23957014 | Msa0945220:intron | 35.0% | |
| GAATAAGAAGAATACGGTTG+AGG | + | chr6_3:23957067-23957086 | Msa0945220:CDS | 35.0% | |
| !! | TGAATTGAGTGTTGGAGATT+TGG | + | chr6_3:23957205-23957224 | Msa0945220:CDS | 35.0% |
| ACAAGGAATGCGAAGAATAA+AGG | + | chr6_3:23957272-23957291 | Msa0945220:CDS | 35.0% | |
| CAAGGAATGCGAAGAATAAA+GGG | + | chr6_3:23957273-23957292 | Msa0945220:CDS | 35.0% | |
| AAGGAATGCGAAGAATAAAG+GGG | + | chr6_3:23957274-23957293 | Msa0945220:CDS | 35.0% | |
| AAATTGCAGGAAGAGATTGT+TGG | + | chr6_3:23957383-23957402 | Msa0945220:CDS | 35.0% | |
| ! | GAGAATTGTGATGATGCTAA+AGG | + | chr6_3:23957422-23957441 | Msa0945220:CDS | 35.0% |
| ! | TTGTGATGATGCTAAAGGAA+AGG | + | chr6_3:23957427-23957446 | Msa0945220:CDS | 35.0% |
| TGCTAAAGGAAAGGAGAAAT+TGG | + | chr6_3:23957436-23957455 | Msa0945220:CDS | 35.0% | |
| TAAAGGAAAGGAGAAATTGG+AGG | + | chr6_3:23957439-23957458 | Msa0945220:CDS | 35.0% | |
| TGATGGAGAAGATAAAGAGA+AGG | + | chr6_3:23957523-23957542 | Msa0945220:CDS | 35.0% | |
| ATTTGAATGGGGATGAGAAT+TGG | + | chr6_3:23957711-23957730 | Msa0945220:CDS | 35.0% | |
| AGAAGATGAATTTAGGTGAG+TGG | + | chr6_3:23957744-23957763 | Msa0945220:CDS | 35.0% | |
| ATGTATCAGAATCAGAAAGC+TGG | + | chr6_3:23957872-23957891 | Msa0945220:CDS | 35.0% | |
| CTACATATACTAGCATTCAG+TGG | - | chr6_3:23957903-23957922 | None:intergenic | 35.0% | |
| ! | GGTACAATATATTCTGGAGA+GGG | - | chr6_3:23958017-23958036 | None:intergenic | 35.0% |
| AAATACCTGGATCTTTGATG+GGG | - | chr6_3:23956485-23956504 | None:intergenic | 35.0% | |
| GAAATACCTGGATCTTTGAT+GGG | - | chr6_3:23956486-23956505 | None:intergenic | 35.0% | |
| CTCACTATCCATTTCAATTC+CGG | + | chr6_3:23956516-23956535 | Msa0945220:CDS | 35.0% | |
| TCCATTTCAATTCCGGTAAT+TGG | + | chr6_3:23956523-23956542 | Msa0945220:intron | 35.0% | |
| TCCAATTACCGGAATTGAAA+TGG | - | chr6_3:23956527-23956546 | None:intergenic | 35.0% | |
| ATCTGTGAGAATCCAATTAC+CGG | - | chr6_3:23956538-23956557 | None:intergenic | 35.0% | |
| ACAGATCTCGATTCTTCTAA+CGG | + | chr6_3:23956552-23956571 | Msa0945220:intron | 35.0% | |
| !! | CTGAGATGAAAAGGAGTATT+CGG | - | chr6_3:23956606-23956625 | None:intergenic | 35.0% |
| AGTAACTTCACCGATCTTAA+TGG | - | chr6_3:23956640-23956659 | None:intergenic | 35.0% | |
| !!! | TTCCCTTTTTTACCCTTCAT+AGG | - | chr6_3:23956726-23956745 | None:intergenic | 35.0% |
| GACGAAGATCAAATGTTGAA+TGG | + | chr6_3:23956789-23956808 | Msa0945220:CDS | 35.0% | |
| ! | TTGAATGGTGATGATGAAGA+TGG | + | chr6_3:23956804-23956823 | Msa0945220:CDS | 35.0% |
| ! | TGATGATGAAGATGGAATTG+TGG | + | chr6_3:23956812-23956831 | Msa0945220:CDS | 35.0% |
| TGATTCTGCTGATGTGAATT+TGG | + | chr6_3:23956890-23956909 | Msa0945220:CDS | 35.0% | |
| ! | TGTAGTATCGAAGAATGTGA+GGG | + | chr6_3:23956917-23956936 | Msa0945220:CDS | 35.0% |
| GAGATATGTGATTCGAGTAA+TGG | + | chr6_3:23956975-23956994 | Msa0945220:CDS | 35.0% | |
| TGGTAATTTGGATGATGTGA+AGG | + | chr6_3:23956995-23957014 | Msa0945220:intron | 35.0% | |
| GAATAAGAAGAATACGGTTG+AGG | + | chr6_3:23957067-23957086 | Msa0945220:CDS | 35.0% | |
| !! | TGAATTGAGTGTTGGAGATT+TGG | + | chr6_3:23957205-23957224 | Msa0945220:CDS | 35.0% |
| ACAAGGAATGCGAAGAATAA+AGG | + | chr6_3:23957272-23957291 | Msa0945220:CDS | 35.0% | |
| CAAGGAATGCGAAGAATAAA+GGG | + | chr6_3:23957273-23957292 | Msa0945220:CDS | 35.0% | |
| AAGGAATGCGAAGAATAAAG+GGG | + | chr6_3:23957274-23957293 | Msa0945220:CDS | 35.0% | |
| AAATTGCAGGAAGAGATTGT+TGG | + | chr6_3:23957383-23957402 | Msa0945220:CDS | 35.0% | |
| ! | GAGAATTGTGATGATGCTAA+AGG | + | chr6_3:23957422-23957441 | Msa0945220:CDS | 35.0% |
| ! | TTGTGATGATGCTAAAGGAA+AGG | + | chr6_3:23957427-23957446 | Msa0945220:CDS | 35.0% |
| TGCTAAAGGAAAGGAGAAAT+TGG | + | chr6_3:23957436-23957455 | Msa0945220:CDS | 35.0% | |
| TAAAGGAAAGGAGAAATTGG+AGG | + | chr6_3:23957439-23957458 | Msa0945220:CDS | 35.0% | |
| TGATGGAGAAGATAAAGAGA+AGG | + | chr6_3:23957523-23957542 | Msa0945220:CDS | 35.0% | |
| ATTTGAATGGGGATGAGAAT+TGG | + | chr6_3:23957711-23957730 | Msa0945220:CDS | 35.0% | |
| AGAAGATGAATTTAGGTGAG+TGG | + | chr6_3:23957744-23957763 | Msa0945220:CDS | 35.0% | |
| ATGTATCAGAATCAGAAAGC+TGG | + | chr6_3:23957872-23957891 | Msa0945220:CDS | 35.0% | |
| CTACATATACTAGCATTCAG+TGG | - | chr6_3:23957903-23957922 | None:intergenic | 35.0% | |
| ! | GGTACAATATATTCTGGAGA+GGG | - | chr6_3:23958017-23958036 | None:intergenic | 35.0% |
| AATTGAAGTGTGAGAGATGG+AGG | - | chr6_3:23956375-23956394 | None:intergenic | 40.0% | |
| AGGAATTGAAGTGTGAGAGA+TGG | - | chr6_3:23956378-23956397 | None:intergenic | 40.0% | |
| !!! | ACCGATTTTGATGGTGGATT+CGG | - | chr6_3:23956439-23956458 | None:intergenic | 40.0% |
| AATCCACCATCAAAATCGGT+CGG | + | chr6_3:23956439-23956458 | Msa0945220:CDS | 40.0% | |
| GGAAATACCTGGATCTTTGA+TGG | - | chr6_3:23956487-23956506 | None:intergenic | 40.0% | |
| ! | GAAATGGATAGTGAGGTGTT+TGG | - | chr6_3:23956511-23956530 | None:intergenic | 40.0% |
| CGGAATTGAAATGGATAGTG+AGG | - | chr6_3:23956518-23956537 | None:intergenic | 40.0% | |
| !! | AGATGAAAAGGAGTATTCGG+AGG | - | chr6_3:23956603-23956622 | None:intergenic | 40.0% |
| GATGGTTCCACCATTAAGAT+CGG | + | chr6_3:23956627-23956646 | Msa0945220:CDS | 40.0% | |
| AACTTCACCGATCTTAATGG+TGG | - | chr6_3:23956637-23956656 | None:intergenic | 40.0% | |
| GGGGATTGATGAAGTTAACA+AGG | - | chr6_3:23956668-23956687 | None:intergenic | 40.0% | |
| CTTCTACTATGGTTTCCGTA+GGG | - | chr6_3:23956698-23956717 | None:intergenic | 40.0% | |
| TCTTCTACTATGGTTTCCGT+AGG | - | chr6_3:23956699-23956718 | None:intergenic | 40.0% | |
| TCTTCGTCAATACTCTGAAC+CGG | - | chr6_3:23956777-23956796 | None:intergenic | 40.0% | |
| GTATTCCTCGTAACCTTCAT+CGG | - | chr6_3:23956849-23956868 | None:intergenic | 40.0% | |
| ! | CTGTAGTATCGAAGAATGTG+AGG | + | chr6_3:23956916-23956935 | Msa0945220:CDS | 40.0% |
| AGGAAGTGAAGAAGAATGTG+AGG | + | chr6_3:23957027-23957046 | Msa0945220:CDS | 40.0% | |
| GGAAGTGAAGAAGAATGTGA+GGG | + | chr6_3:23957028-23957047 | Msa0945220:CDS | 40.0% | |
| TGATTCGAGCAATGGAGATT+TGG | + | chr6_3:23957094-23957113 | Msa0945220:CDS | 40.0% | |
| AGGAAGTGAAGAAGAATGTG+AGG | + | chr6_3:23957027-23957046 | Msa0945220:CDS | 40.0% | |
| GGAAGTGAAGAAGAATGTGA+GGG | + | chr6_3:23957028-23957047 | Msa0945220:CDS | 40.0% | |
| GAGGTTTCTGAATTGAGTGT+TGG | + | chr6_3:23957197-23957216 | Msa0945220:intron | 40.0% | |
| !! | TTGAGTGTTGGAGATTTGGA+TGG | + | chr6_3:23957209-23957228 | Msa0945220:CDS | 40.0% |
| GAATAAAGGGGTTGTGATTG+AGG | + | chr6_3:23957286-23957305 | Msa0945220:CDS | 40.0% | |
| GATTGAGGAAGATTTGAGCT+TGG | + | chr6_3:23957301-23957320 | Msa0945220:CDS | 40.0% | |
| ! | GAAGATTTGAGCTTGGTGAA+TGG | + | chr6_3:23957308-23957327 | Msa0945220:CDS | 40.0% |
| GAGAAAAAGAAAACAAGGGG+CGG | + | chr6_3:23957344-23957363 | Msa0945220:intron | 40.0% | |
| TAAGGGGAAGAAGAAATTGC+AGG | + | chr6_3:23957370-23957389 | Msa0945220:intron | 40.0% | |
| ! | AAATTGGAGGAAGAGTGTGT+TGG | + | chr6_3:23957452-23957471 | Msa0945220:CDS | 40.0% |
| ! | AATTTACCAGAAGAGCGTGT+TGG | + | chr6_3:23957500-23957519 | Msa0945220:CDS | 40.0% |
| ! | CAAGAAAAGTGTGTTGGTGA+TGG | + | chr6_3:23957650-23957669 | Msa0945220:CDS | 40.0% |
| ! | AGGTGAGTGGTTTGATTTCT+TGG | + | chr6_3:23957757-23957776 | Msa0945220:CDS | 40.0% |
| GATACATTATGACGTACTCG+CGG | - | chr6_3:23957859-23957878 | None:intergenic | 40.0% | |
| GCATTAGCACAACTGTTGTT+AGG | + | chr6_3:23957943-23957962 | Msa0945220:three_prime_UTR | 40.0% | |
| ! | CGGTACAATATATTCTGGAG+AGG | - | chr6_3:23958018-23958037 | None:intergenic | 40.0% |
| AATTGAAGTGTGAGAGATGG+AGG | - | chr6_3:23956375-23956394 | None:intergenic | 40.0% | |
| AGGAATTGAAGTGTGAGAGA+TGG | - | chr6_3:23956378-23956397 | None:intergenic | 40.0% | |
| !!! | ACCGATTTTGATGGTGGATT+CGG | - | chr6_3:23956439-23956458 | None:intergenic | 40.0% |
| AATCCACCATCAAAATCGGT+CGG | + | chr6_3:23956439-23956458 | Msa0945220:CDS | 40.0% | |
| GGAAATACCTGGATCTTTGA+TGG | - | chr6_3:23956487-23956506 | None:intergenic | 40.0% | |
| ! | GAAATGGATAGTGAGGTGTT+TGG | - | chr6_3:23956511-23956530 | None:intergenic | 40.0% |
| CGGAATTGAAATGGATAGTG+AGG | - | chr6_3:23956518-23956537 | None:intergenic | 40.0% | |
| !! | AGATGAAAAGGAGTATTCGG+AGG | - | chr6_3:23956603-23956622 | None:intergenic | 40.0% |
| GATGGTTCCACCATTAAGAT+CGG | + | chr6_3:23956627-23956646 | Msa0945220:CDS | 40.0% | |
| AACTTCACCGATCTTAATGG+TGG | - | chr6_3:23956637-23956656 | None:intergenic | 40.0% | |
| GGGGATTGATGAAGTTAACA+AGG | - | chr6_3:23956668-23956687 | None:intergenic | 40.0% | |
| CTTCTACTATGGTTTCCGTA+GGG | - | chr6_3:23956698-23956717 | None:intergenic | 40.0% | |
| TCTTCTACTATGGTTTCCGT+AGG | - | chr6_3:23956699-23956718 | None:intergenic | 40.0% | |
| TCTTCGTCAATACTCTGAAC+CGG | - | chr6_3:23956777-23956796 | None:intergenic | 40.0% | |
| GTATTCCTCGTAACCTTCAT+CGG | - | chr6_3:23956849-23956868 | None:intergenic | 40.0% | |
| ! | CTGTAGTATCGAAGAATGTG+AGG | + | chr6_3:23956916-23956935 | Msa0945220:CDS | 40.0% |
| AGGAAGTGAAGAAGAATGTG+AGG | + | chr6_3:23957027-23957046 | Msa0945220:CDS | 40.0% | |
| GGAAGTGAAGAAGAATGTGA+GGG | + | chr6_3:23957028-23957047 | Msa0945220:CDS | 40.0% | |
| TGATTCGAGCAATGGAGATT+TGG | + | chr6_3:23957094-23957113 | Msa0945220:CDS | 40.0% | |
| AGGAAGTGAAGAAGAATGTG+AGG | + | chr6_3:23957027-23957046 | Msa0945220:CDS | 40.0% | |
| GGAAGTGAAGAAGAATGTGA+GGG | + | chr6_3:23957028-23957047 | Msa0945220:CDS | 40.0% | |
| GAGGTTTCTGAATTGAGTGT+TGG | + | chr6_3:23957197-23957216 | Msa0945220:intron | 40.0% | |
| !! | TTGAGTGTTGGAGATTTGGA+TGG | + | chr6_3:23957209-23957228 | Msa0945220:CDS | 40.0% |
| GAATAAAGGGGTTGTGATTG+AGG | + | chr6_3:23957286-23957305 | Msa0945220:CDS | 40.0% | |
| GATTGAGGAAGATTTGAGCT+TGG | + | chr6_3:23957301-23957320 | Msa0945220:CDS | 40.0% | |
| ! | GAAGATTTGAGCTTGGTGAA+TGG | + | chr6_3:23957308-23957327 | Msa0945220:CDS | 40.0% |
| GAGAAAAAGAAAACAAGGGG+CGG | + | chr6_3:23957344-23957363 | Msa0945220:intron | 40.0% | |
| TAAGGGGAAGAAGAAATTGC+AGG | + | chr6_3:23957370-23957389 | Msa0945220:intron | 40.0% | |
| ! | AAATTGGAGGAAGAGTGTGT+TGG | + | chr6_3:23957452-23957471 | Msa0945220:CDS | 40.0% |
| ! | AATTTACCAGAAGAGCGTGT+TGG | + | chr6_3:23957500-23957519 | Msa0945220:CDS | 40.0% |
| ! | CAAGAAAAGTGTGTTGGTGA+TGG | + | chr6_3:23957650-23957669 | Msa0945220:CDS | 40.0% |
| ! | AGGTGAGTGGTTTGATTTCT+TGG | + | chr6_3:23957757-23957776 | Msa0945220:CDS | 40.0% |
| GATACATTATGACGTACTCG+CGG | - | chr6_3:23957859-23957878 | None:intergenic | 40.0% | |
| GCATTAGCACAACTGTTGTT+AGG | + | chr6_3:23957943-23957962 | Msa0945220:three_prime_UTR | 40.0% | |
| ! | CGGTACAATATATTCTGGAG+AGG | - | chr6_3:23958018-23958037 | None:intergenic | 40.0% |
| ! | GGATTCGGGTTTGAATAGGT+GGG | - | chr6_3:23956424-23956443 | None:intergenic | 45.0% |
| ! | TGGATTCGGGTTTGAATAGG+TGG | - | chr6_3:23956425-23956444 | None:intergenic | 45.0% |
| !! | TGGTGGATTCGGGTTTGAAT+AGG | - | chr6_3:23956428-23956447 | None:intergenic | 45.0% |
| !!! | CCGATTTTGATGGTGGATTC+GGG | - | chr6_3:23956438-23956457 | None:intergenic | 45.0% |
| CCCGAATCCACCATCAAAAT+CGG | + | chr6_3:23956435-23956454 | Msa0945220:CDS | 45.0% | |
| ATCCACCATCAAAATCGGTC+GGG | + | chr6_3:23956440-23956459 | Msa0945220:CDS | 45.0% | |
| ! | AGGTGTTTGGTGGAAATACC+TGG | - | chr6_3:23956498-23956517 | None:intergenic | 45.0% |
| ! | ATGGATAGTGAGGTGTTTGG+TGG | - | chr6_3:23956508-23956527 | None:intergenic | 45.0% |
| !! | AAAGGAGTATTCGGAGGAAC+AGG | - | chr6_3:23956597-23956616 | None:intergenic | 45.0% |
| ! | ACTCCTTTTCATCTCAGCGA+TGG | + | chr6_3:23956609-23956628 | Msa0945220:CDS | 45.0% |
| GAACCATCGCTGAGATGAAA+AGG | - | chr6_3:23956615-23956634 | None:intergenic | 45.0% | |
| CAATCCCCAAAGTAACCCTA+CGG | + | chr6_3:23956680-23956699 | Msa0945220:CDS | 45.0% | |
| ! | GTTTCCGTAGGGTTACTTTG+GGG | - | chr6_3:23956687-23956706 | None:intergenic | 45.0% |
| ! | GGTTTCCGTAGGGTTACTTT+GGG | - | chr6_3:23956688-23956707 | None:intergenic | 45.0% |
| TGGTTTCCGTAGGGTTACTT+TGG | - | chr6_3:23956689-23956708 | None:intergenic | 45.0% | |
| TGAAGGTTACGAGGAATACG+CGG | + | chr6_3:23956850-23956869 | Msa0945220:CDS | 45.0% | |
| GGATGATGTGAAGGAGAAAG+TGG | + | chr6_3:23957004-23957023 | Msa0945220:intron | 45.0% | |
| TGATGTGAAGGAGAAAGTGG+AGG | + | chr6_3:23957007-23957026 | Msa0945220:intron | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr6_3:23957036-23957055 | Msa0945220:CDS | 45.0% | |
| GAGGTTTGTGATTCGAGCAA+TGG | + | chr6_3:23957086-23957105 | Msa0945220:CDS | 45.0% | |
| TTCGAGCAATGGAGATTTGG+AGG | + | chr6_3:23957097-23957116 | Msa0945220:CDS | 45.0% | |
| TCGAGCAATGGAGATTTGGA+GGG | + | chr6_3:23957098-23957117 | Msa0945220:CDS | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr6_3:23957036-23957055 | Msa0945220:CDS | 45.0% | |
| TGAGGGTGACAAGGAATTTG+AGG | + | chr6_3:23957156-23957175 | Msa0945220:intron | 45.0% | |
| TGGAGATTTGGATGGTGTGA+AGG | + | chr6_3:23957217-23957236 | Msa0945220:CDS | 45.0% | |
| TTTGGATGGTGTGAAGGAGA+AGG | + | chr6_3:23957223-23957242 | Msa0945220:CDS | 45.0% | |
| ! | TTTGAGCTTGGTGAATGGAG+TGG | + | chr6_3:23957313-23957332 | Msa0945220:CDS | 45.0% |
| ! | CAGGAAGAGATTGTTGGTGA+TGG | + | chr6_3:23957389-23957408 | Msa0945220:CDS | 45.0% |
| !! | GAGATTGTTGGTGATGGAGA+TGG | + | chr6_3:23957395-23957414 | Msa0945220:CDS | 45.0% |
| ! | AAATTACCGGAAGAGTGCGT+TGG | + | chr6_3:23957548-23957567 | Msa0945220:CDS | 45.0% |
| !! | AAGTGTGTTGGTGATGGAGA+TGG | + | chr6_3:23957656-23957675 | Msa0945220:CDS | 45.0% |
| ! | GGATGAGAATTGGCCTGATT+TGG | + | chr6_3:23957721-23957740 | Msa0945220:CDS | 45.0% |
| ! | TCTCTCGGCTTTTTGTCTCA+TGG | - | chr6_3:23957834-23957853 | None:intergenic | 45.0% |
| ! | GGATTCGGGTTTGAATAGGT+GGG | - | chr6_3:23956424-23956443 | None:intergenic | 45.0% |
| ! | TGGATTCGGGTTTGAATAGG+TGG | - | chr6_3:23956425-23956444 | None:intergenic | 45.0% |
| !! | TGGTGGATTCGGGTTTGAAT+AGG | - | chr6_3:23956428-23956447 | None:intergenic | 45.0% |
| !!! | CCGATTTTGATGGTGGATTC+GGG | - | chr6_3:23956438-23956457 | None:intergenic | 45.0% |
| CCCGAATCCACCATCAAAAT+CGG | + | chr6_3:23956435-23956454 | Msa0945220:CDS | 45.0% | |
| ATCCACCATCAAAATCGGTC+GGG | + | chr6_3:23956440-23956459 | Msa0945220:CDS | 45.0% | |
| ! | AGGTGTTTGGTGGAAATACC+TGG | - | chr6_3:23956498-23956517 | None:intergenic | 45.0% |
| ! | ATGGATAGTGAGGTGTTTGG+TGG | - | chr6_3:23956508-23956527 | None:intergenic | 45.0% |
| !! | AAAGGAGTATTCGGAGGAAC+AGG | - | chr6_3:23956597-23956616 | None:intergenic | 45.0% |
| ! | ACTCCTTTTCATCTCAGCGA+TGG | + | chr6_3:23956609-23956628 | Msa0945220:CDS | 45.0% |
| GAACCATCGCTGAGATGAAA+AGG | - | chr6_3:23956615-23956634 | None:intergenic | 45.0% | |
| CAATCCCCAAAGTAACCCTA+CGG | + | chr6_3:23956680-23956699 | Msa0945220:CDS | 45.0% | |
| ! | GTTTCCGTAGGGTTACTTTG+GGG | - | chr6_3:23956687-23956706 | None:intergenic | 45.0% |
| ! | GGTTTCCGTAGGGTTACTTT+GGG | - | chr6_3:23956688-23956707 | None:intergenic | 45.0% |
| TGGTTTCCGTAGGGTTACTT+TGG | - | chr6_3:23956689-23956708 | None:intergenic | 45.0% | |
| TGAAGGTTACGAGGAATACG+CGG | + | chr6_3:23956850-23956869 | Msa0945220:CDS | 45.0% | |
| GGATGATGTGAAGGAGAAAG+TGG | + | chr6_3:23957004-23957023 | Msa0945220:intron | 45.0% | |
| TGATGTGAAGGAGAAAGTGG+AGG | + | chr6_3:23957007-23957026 | Msa0945220:intron | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr6_3:23957036-23957055 | Msa0945220:CDS | 45.0% | |
| GAGGTTTGTGATTCGAGCAA+TGG | + | chr6_3:23957086-23957105 | Msa0945220:CDS | 45.0% | |
| TTCGAGCAATGGAGATTTGG+AGG | + | chr6_3:23957097-23957116 | Msa0945220:CDS | 45.0% | |
| TCGAGCAATGGAGATTTGGA+GGG | + | chr6_3:23957098-23957117 | Msa0945220:CDS | 45.0% | |
| AGAAGAATGTGAGGGTGACA+AGG | + | chr6_3:23957036-23957055 | Msa0945220:CDS | 45.0% | |
| TGAGGGTGACAAGGAATTTG+AGG | + | chr6_3:23957156-23957175 | Msa0945220:intron | 45.0% | |
| TGGAGATTTGGATGGTGTGA+AGG | + | chr6_3:23957217-23957236 | Msa0945220:CDS | 45.0% | |
| TTTGGATGGTGTGAAGGAGA+AGG | + | chr6_3:23957223-23957242 | Msa0945220:CDS | 45.0% | |
| ! | TTTGAGCTTGGTGAATGGAG+TGG | + | chr6_3:23957313-23957332 | Msa0945220:CDS | 45.0% |
| ! | CAGGAAGAGATTGTTGGTGA+TGG | + | chr6_3:23957389-23957408 | Msa0945220:CDS | 45.0% |
| !! | GAGATTGTTGGTGATGGAGA+TGG | + | chr6_3:23957395-23957414 | Msa0945220:CDS | 45.0% |
| ! | AAATTACCGGAAGAGTGCGT+TGG | + | chr6_3:23957548-23957567 | Msa0945220:CDS | 45.0% |
| !! | AAGTGTGTTGGTGATGGAGA+TGG | + | chr6_3:23957656-23957675 | Msa0945220:CDS | 45.0% |
| ! | GGATGAGAATTGGCCTGATT+TGG | + | chr6_3:23957721-23957740 | Msa0945220:CDS | 45.0% |
| ! | TCTCTCGGCTTTTTGTCTCA+TGG | - | chr6_3:23957834-23957853 | None:intergenic | 45.0% |
| CTCACACTTCAATTCCTCGC+CGG | + | chr6_3:23956381-23956400 | Msa0945220:CDS | 50.0% | |
| !! | GATGACCCGACCGATTTTGA+TGG | - | chr6_3:23956448-23956467 | None:intergenic | 50.0% |
| AACCTCCCCATCAAAGATCC+AGG | + | chr6_3:23956477-23956496 | Msa0945220:CDS | 50.0% | |
| TACCTGGATCTTTGATGGGG+AGG | - | chr6_3:23956482-23956501 | None:intergenic | 50.0% | |
| !! | CTCGTAACCTTCATCGGTTC+AGG | - | chr6_3:23956843-23956862 | None:intergenic | 50.0% |
| CTGAACCGATGAAGGTTACG+AGG | + | chr6_3:23956841-23956860 | Msa0945220:CDS | 50.0% | |
| ! | GGAGGGTGTGAAAGAGAAAG+TGG | + | chr6_3:23957115-23957134 | Msa0945220:CDS | 50.0% |
| GGGTGTGAAAGAGAAAGTGG+AGG | + | chr6_3:23957118-23957137 | Msa0945220:CDS | 50.0% | |
| CTTGTCATCCTCACACTCCT+CGG | - | chr6_3:23957257-23957276 | None:intergenic | 50.0% | |
| ! | AAAACAAGGGGCGGTGCTAA+GGG | + | chr6_3:23957353-23957372 | Msa0945220:intron | 50.0% |
| ! | GAGGAAGAGTGTGTTGGTGA+TGG | + | chr6_3:23957458-23957477 | Msa0945220:CDS | 50.0% |
| CTCACACTTCAATTCCTCGC+CGG | + | chr6_3:23956381-23956400 | Msa0945220:CDS | 50.0% | |
| !! | GATGACCCGACCGATTTTGA+TGG | - | chr6_3:23956448-23956467 | None:intergenic | 50.0% |
| AACCTCCCCATCAAAGATCC+AGG | + | chr6_3:23956477-23956496 | Msa0945220:CDS | 50.0% | |
| TACCTGGATCTTTGATGGGG+AGG | - | chr6_3:23956482-23956501 | None:intergenic | 50.0% | |
| !! | CTCGTAACCTTCATCGGTTC+AGG | - | chr6_3:23956843-23956862 | None:intergenic | 50.0% |
| CTGAACCGATGAAGGTTACG+AGG | + | chr6_3:23956841-23956860 | Msa0945220:CDS | 50.0% | |
| ! | GGAGGGTGTGAAAGAGAAAG+TGG | + | chr6_3:23957115-23957134 | Msa0945220:CDS | 50.0% |
| GGGTGTGAAAGAGAAAGTGG+AGG | + | chr6_3:23957118-23957137 | Msa0945220:CDS | 50.0% | |
| CTTGTCATCCTCACACTCCT+CGG | - | chr6_3:23957257-23957276 | None:intergenic | 50.0% | |
| ! | AAAACAAGGGGCGGTGCTAA+GGG | + | chr6_3:23957353-23957372 | Msa0945220:intron | 50.0% |
| ! | GAGGAAGAGTGTGTTGGTGA+TGG | + | chr6_3:23957458-23957477 | Msa0945220:CDS | 50.0% |
| GGTTTCGCCTTTACGTGGAC+CGG | - | chr6_3:23956403-23956422 | None:intergenic | 55.0% | |
| ! | AGGTGGGTTTCGCCTTTACG+TGG | - | chr6_3:23956408-23956427 | None:intergenic | 55.0% |
| !! | GACCCGACCGATTTTGATGG+TGG | - | chr6_3:23956445-23956464 | None:intergenic | 55.0% |
| AAAATCGGTCGGGTCATCCG+CGG | + | chr6_3:23956450-23956469 | Msa0945220:CDS | 55.0% | |
| GGATCGACCTGAACCGATGA+AGG | + | chr6_3:23956833-23956852 | Msa0945220:CDS | 55.0% | |
| TTACGAGGAATACGCGGAGC+AGG | + | chr6_3:23956856-23956875 | Msa0945220:CDS | 55.0% | |
| CGAAGAATGTGAGGGTGACG+AGG | + | chr6_3:23956925-23956944 | Msa0945220:CDS | 55.0% | |
| GGATGGTGTGAAGGAGAAGG+TGG | + | chr6_3:23957226-23957245 | Msa0945220:CDS | 55.0% | |
| TGGTGTGAAGGAGAAGGTGG+AGG | + | chr6_3:23957229-23957248 | Msa0945220:CDS | 55.0% | |
| ! | CGAGGAGTGTGAGGATGACA+AGG | + | chr6_3:23957255-23957274 | Msa0945220:CDS | 55.0% |
| ! | GAAAACAAGGGGCGGTGCTA+AGG | + | chr6_3:23957352-23957371 | Msa0945220:intron | 55.0% |
| ! | AAACAAGGGGCGGTGCTAAG+GGG | + | chr6_3:23957354-23957373 | Msa0945220:intron | 55.0% |
| CCATCACCAACACGCTCTTC+TGG | - | chr6_3:23957509-23957528 | None:intergenic | 55.0% | |
| ! | CCAGAAGAGCGTGTTGGTGA+TGG | + | chr6_3:23957506-23957525 | Msa0945220:CDS | 55.0% |
| TCGTCACCAACGCACTCTTC+CGG | - | chr6_3:23957557-23957576 | None:intergenic | 55.0% | |
| GGTTTCGCCTTTACGTGGAC+CGG | - | chr6_3:23956403-23956422 | None:intergenic | 55.0% | |
| ! | AGGTGGGTTTCGCCTTTACG+TGG | - | chr6_3:23956408-23956427 | None:intergenic | 55.0% |
| !! | GACCCGACCGATTTTGATGG+TGG | - | chr6_3:23956445-23956464 | None:intergenic | 55.0% |
| AAAATCGGTCGGGTCATCCG+CGG | + | chr6_3:23956450-23956469 | Msa0945220:CDS | 55.0% | |
| GGATCGACCTGAACCGATGA+AGG | + | chr6_3:23956833-23956852 | Msa0945220:CDS | 55.0% | |
| TTACGAGGAATACGCGGAGC+AGG | + | chr6_3:23956856-23956875 | Msa0945220:CDS | 55.0% | |
| CGAAGAATGTGAGGGTGACG+AGG | + | chr6_3:23956925-23956944 | Msa0945220:CDS | 55.0% | |
| GGATGGTGTGAAGGAGAAGG+TGG | + | chr6_3:23957226-23957245 | Msa0945220:CDS | 55.0% | |
| TGGTGTGAAGGAGAAGGTGG+AGG | + | chr6_3:23957229-23957248 | Msa0945220:CDS | 55.0% | |
| ! | CGAGGAGTGTGAGGATGACA+AGG | + | chr6_3:23957255-23957274 | Msa0945220:CDS | 55.0% |
| ! | GAAAACAAGGGGCGGTGCTA+AGG | + | chr6_3:23957352-23957371 | Msa0945220:intron | 55.0% |
| ! | AAACAAGGGGCGGTGCTAAG+GGG | + | chr6_3:23957354-23957373 | Msa0945220:intron | 55.0% |
| CCATCACCAACACGCTCTTC+TGG | - | chr6_3:23957509-23957528 | None:intergenic | 55.0% | |
| ! | CCAGAAGAGCGTGTTGGTGA+TGG | + | chr6_3:23957506-23957525 | Msa0945220:CDS | 55.0% |
| TCGTCACCAACGCACTCTTC+CGG | - | chr6_3:23957557-23957576 | None:intergenic | 55.0% | |
| TTCCTCGCCGGTCCACGTAA+AGG | + | chr6_3:23956393-23956412 | Msa0945220:CDS | 60.0% | |
| TGATGGGGAGGTTGTTGCCG+CGG | - | chr6_3:23956470-23956489 | None:intergenic | 60.0% | |
| GACGTACTCGCGGAGTCTCT+CGG | - | chr6_3:23957849-23957868 | None:intergenic | 60.0% | |
| TTCCTCGCCGGTCCACGTAA+AGG | + | chr6_3:23956393-23956412 | Msa0945220:CDS | 60.0% | |
| TGATGGGGAGGTTGTTGCCG+CGG | - | chr6_3:23956470-23956489 | None:intergenic | 60.0% | |
| GACGTACTCGCGGAGTCTCT+CGG | - | chr6_3:23957849-23957868 | None:intergenic | 60.0% | |
| AGGAGAAGGTGGAGGAGCCG+AGG | + | chr6_3:23957237-23957256 | Msa0945220:CDS | 65.0% | |
| ! | TGGAGGAGCCGAGGAGTGTG+AGG | + | chr6_3:23957246-23957265 | Msa0945220:CDS | 65.0% |
| AGGAGAAGGTGGAGGAGCCG+AGG | + | chr6_3:23957237-23957256 | Msa0945220:CDS | 65.0% | |
| ! | TGGAGGAGCCGAGGAGTGTG+AGG | + | chr6_3:23957246-23957265 | Msa0945220:CDS | 65.0% |
| CGCCTTTACGTGGACCGGCG+AGG | - | chr6_3:23956398-23956417 | None:intergenic | 70.0% | |
| CGCCTTTACGTGGACCGGCG+AGG | - | chr6_3:23956398-23956417 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 23956354 | 23958138 | 23956354 | ID=Msa0945220;Name=Msa0945220 |
| chr6_3 | mRNA | 23956354 | 23958138 | 23956354 | ID=Msa0945220-mRNA-1;Parent=Msa0945220;Name=Msa0945220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.2|0.16|1|0|0|6|225|485 |
| chr6_3 | exon | 23956354 | 23956537 | 23956354 | ID=Msa0945220-mRNA-1:exon:6716;Parent=Msa0945220-mRNA-1 |
| chr6_3 | exon | 23956556 | 23956776 | 23956556 | ID=Msa0945220-mRNA-1:exon:6717;Parent=Msa0945220-mRNA-1 |
| chr6_3 | exon | 23956783 | 23957010 | 23956783 | ID=Msa0945220-mRNA-1:exon:6718;Parent=Msa0945220-mRNA-1 |
| chr6_3 | exon | 23957017 | 23957160 | 23957017 | ID=Msa0945220-mRNA-1:exon:6719;Parent=Msa0945220-mRNA-1 |
| chr6_3 | exon | 23957200 | 23957340 | 23957200 | ID=Msa0945220-mRNA-1:exon:6720;Parent=Msa0945220-mRNA-1 |
| chr6_3 | exon | 23957374 | 23958138 | 23957374 | ID=Msa0945220-mRNA-1:exon:6721;Parent=Msa0945220-mRNA-1 |
| chr6_3 | CDS | 23956354 | 23956537 | 23956354 | ID=Msa0945220-mRNA-1:cds;Parent=Msa0945220-mRNA-1 |
| chr6_3 | CDS | 23956556 | 23956776 | 23956556 | ID=Msa0945220-mRNA-1:cds;Parent=Msa0945220-mRNA-1 |
| chr6_3 | CDS | 23956783 | 23957010 | 23956783 | ID=Msa0945220-mRNA-1:cds;Parent=Msa0945220-mRNA-1 |
| chr6_3 | CDS | 23957017 | 23957160 | 23957017 | ID=Msa0945220-mRNA-1:cds;Parent=Msa0945220-mRNA-1 |
| chr6_3 | CDS | 23957200 | 23957340 | 23957200 | ID=Msa0945220-mRNA-1:cds;Parent=Msa0945220-mRNA-1 |
| chr6_3 | CDS | 23957374 | 23957913 | 23957374 | ID=Msa0945220-mRNA-1:cds;Parent=Msa0945220-mRNA-1 |
| chr6_3 | three_prime_UTR | 23957914 | 23958138 | 23957914 | ID=Msa0945220-mRNA-1:three_prime_utr;Parent=Msa0945220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
