Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481120 | XP_003609697.1 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 4.24e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481120 | sp|Q78P75|DYL2_RAT | 68.605 | 86 | 27 | 0 | 45 | 130 | 4 | 89 | 2.20e-42 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481120 | G7JLJ9 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 2.02e-90 | 267 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0481120 | Msa1217770 | 0.872586 | 2.838745e-67 | -8.615850e-47 |
| Msa0481120 | Msa1217930 | 0.990540 | 4.030804e-183 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481120 | MtrunA17_Chr4g0067531 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 3.90e-94 | 267 |
| Msa0481120 | MtrunA17_Chr8g0360861 | 48.837 | 86 | 42 | 1 | 46 | 129 | 5 | 90 | 2.55e-26 | 95.1 |
| Msa0481120 | MtrunA17_Chr4g0059791 | 52.439 | 82 | 36 | 2 | 51 | 129 | 220 | 301 | 4.52e-21 | 85.9 |
| Msa0481120 | MtrunA17_Chr8g0391451 | 43.478 | 92 | 38 | 2 | 47 | 129 | 54 | 140 | 1.48e-18 | 76.3 |
| Msa0481120 | MtrunA17_Chr4g0063491 | 46.591 | 88 | 39 | 3 | 46 | 129 | 155 | 238 | 7.33e-18 | 76.6 |
| Msa0481120 | MtrunA17_Chr2g0331651 | 40.698 | 86 | 49 | 1 | 46 | 129 | 5 | 90 | 8.23e-17 | 70.1 |
| Msa0481120 | MtrunA17_Chr6g0485891 | 37.647 | 85 | 51 | 1 | 46 | 128 | 39 | 123 | 4.51e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481120 | AT4G15930.1 | 66.923 | 130 | 36 | 3 | 1 | 130 | 1 | 123 | 1.07e-57 | 175 |
| Msa0481120 | AT4G15930.2 | 58.654 | 104 | 36 | 3 | 1 | 104 | 1 | 97 | 1.07e-35 | 118 |
| Msa0481120 | AT5G20110.1 | 49.425 | 87 | 38 | 2 | 47 | 129 | 117 | 201 | 1.38e-19 | 80.9 |
| Msa0481120 | AT1G23220.1 | 42.529 | 87 | 47 | 1 | 47 | 130 | 36 | 122 | 2.53e-18 | 75.5 |
| Msa0481120 | AT1G52245.1 | 40.698 | 86 | 49 | 1 | 46 | 129 | 5 | 90 | 1.03e-17 | 72.8 |
| Msa0481120 | AT4G27360.1 | 38.824 | 85 | 50 | 1 | 46 | 128 | 5 | 89 | 9.39e-17 | 70.9 |
| Msa0481120 | AT3G16120.2 | 39.759 | 83 | 48 | 1 | 49 | 129 | 8 | 90 | 2.47e-16 | 69.3 |
| Msa0481120 | AT3G16120.1 | 39.759 | 83 | 48 | 1 | 49 | 129 | 8 | 90 | 2.47e-16 | 69.3 |
Find 44 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTTTGTTTATTTCTATT+TGG | 0.134093 | 3_3:-86867375 | Msa0481120:CDS |
| TTCTCCTTGCTGTTGGTTCT+TGG | 0.178456 | 3_3:+86869958 | None:intergenic |
| TACCTAATTCTCTCTCTTGC+AGG | 0.259833 | 3_3:+86869891 | None:intergenic |
| GCAAACTGGGTTCTCAAGTT+TGG | 0.292328 | 3_3:-86867176 | Msa0481120:three_prime_UTR |
| TTCTTCGTTGCGGGTGTTGC+AGG | 0.303894 | 3_3:+86869747 | None:intergenic |
| CCATTCCATTCACATGTATT+GGG | 0.311028 | 3_3:-86867109 | Msa0481120:three_prime_UTR |
| ATAATGACCTTCTTCGTTGC+GGG | 0.323218 | 3_3:+86869738 | None:intergenic |
| TCCATTCCATTCACATGTAT+TGG | 0.327294 | 3_3:-86867110 | Msa0481120:three_prime_UTR |
| TGTATTGTTGGTCGCAATTT+CGG | 0.332097 | 3_3:-86869467 | Msa0481120:intron |
| AGATAATAATTTATGTTGAA+TGG | 0.341950 | 3_3:+86867054 | None:intergenic |
| CACCTGCAAGAGAGAGAATT+AGG | 0.341950 | 3_3:-86869893 | Msa0481120:five_prime_UTR |
| ATATCTAATTTCATGCAAAC+TGG | 0.351170 | 3_3:-86867190 | Msa0481120:three_prime_UTR |
| CCTACTTGGCATTGTATTGT+TGG | 0.395219 | 3_3:-86869479 | Msa0481120:CDS |
| ACAAGAGGCATGGTCCTACT+TGG | 0.447517 | 3_3:-86869493 | Msa0481120:CDS |
| AAGAAGCACAGCGCAGGTGG+AGG | 0.466246 | 3_3:-86869846 | Msa0481120:CDS |
| GCGAAGAAGCACAGCGCAGG+TGG | 0.479599 | 3_3:-86869849 | Msa0481120:CDS |
| AATTAGATTCTCCTTGCTGT+TGG | 0.495644 | 3_3:+86869951 | None:intergenic |
| GAATTCCCAATACATGTGAA+TGG | 0.495884 | 3_3:+86867104 | None:intergenic |
| GAGGCGAAGAAGCACAGCGC+AGG | 0.496399 | 3_3:-86869852 | Msa0481120:CDS |
| AGGTGGAGGAGCATCTCTAA+TGG | 0.510524 | 3_3:-86869832 | Msa0481120:CDS |
| TGCAACACCCGCAACGAAGA+AGG | 0.520232 | 3_3:-86869745 | Msa0481120:CDS |
| TTGCATGTCAGGGAGCATAT+CGG | 0.526660 | 3_3:+86869707 | None:intergenic |
| TGTTGCAGAGACTATAAAGA+AGG | 0.528953 | 3_3:-86869522 | Msa0481120:CDS |
| CCCAATACATGTGAATGGAA+TGG | 0.535113 | 3_3:+86867109 | None:intergenic |
| TGAATGGAATGGAACACAAA+GGG | 0.537376 | 3_3:+86867120 | None:intergenic |
| GTTTGTTTCATGAGTCACAT+AGG | 0.542936 | 3_3:+86867397 | None:intergenic |
| TGCGGGTGTTGCAGGAGAAG+CGG | 0.546280 | 3_3:+86869755 | None:intergenic |
| TCTGGCTAGCCTTATTCTGA+TGG | 0.546660 | 3_3:-86867326 | Msa0481120:exon |
| TATGCTCCCTGACATGCAAA+AGG | 0.547026 | 3_3:-86869703 | Msa0481120:CDS |
| TATCTAATTTCATGCAAACT+GGG | 0.565835 | 3_3:-86867189 | Msa0481120:three_prime_UTR |
| GATAATGACCTTCTTCGTTG+CGG | 0.566862 | 3_3:+86869737 | None:intergenic |
| GGAGAAGCGGATGCAGAGAG+TGG | 0.576599 | 3_3:+86869768 | None:intergenic |
| CCAAATAGAAATAAACAAAG+TGG | 0.592216 | 3_3:+86867375 | None:intergenic |
| CCAACAATACAATGCCAAGT+AGG | 0.596782 | 3_3:+86869479 | None:intergenic |
| AATTGAATTAGGCATTTGAG+AGG | 0.599018 | 3_3:-86869562 | Msa0481120:intron |
| GGCTAGCCTTATTCTGATGG+AGG | 0.621751 | 3_3:-86867323 | Msa0481120:exon |
| TAGGTAAAGAAAGATGAGCG+AGG | 0.624160 | 3_3:-86869874 | Msa0481120:exon |
| AAGGAGTTTGACAAGAGGCA+TGG | 0.631606 | 3_3:-86869503 | Msa0481120:CDS |
| AAATCCAAGAACCAACAGCA+AGG | 0.645600 | 3_3:-86869962 | Msa0481120:five_prime_UTR |
| GTGAATGGAATGGAACACAA+AGG | 0.653029 | 3_3:+86867119 | None:intergenic |
| GAGAGTGGAGATGTAACAAG+TGG | 0.663410 | 3_3:+86869783 | None:intergenic |
| AACAACGACAGCGATATCAA+CGG | 0.685652 | 3_3:+86869677 | None:intergenic |
| TAAAGAAGGAGTTTGACAAG+AGG | 0.686443 | 3_3:-86869508 | Msa0481120:CDS |
| GTAAAGAAAGATGAGCGAGG+AGG | 0.700815 | 3_3:-86869871 | Msa0481120:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAAATTAAATTCTA+AGG | - | chr3_3:86867839-86867858 | Msa0481120:intron | 10.0% |
| !! | AAATTAGAAAAAATTGAAGA+AGG | + | chr3_3:86867442-86867461 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGAAATTGAATT+AGG | - | chr3_3:86867486-86867505 | Msa0481120:intron | 15.0% |
| !! | TAGATTATAGATCTAATTAA+GGG | + | chr3_3:86867630-86867649 | None:intergenic | 15.0% |
| !! | ATAGATTATAGATCTAATTA+AGG | + | chr3_3:86867631-86867650 | None:intergenic | 15.0% |
| !!! | CTAACAACAATTTTAAAAAA+TGG | + | chr3_3:86867901-86867920 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTTTGTGATG+TGG | - | chr3_3:86868756-86868775 | Msa0481120:intron | 15.0% |
| !! | TATAAGTTTGATATTATGAA+CGG | - | chr3_3:86868947-86868966 | Msa0481120:intron | 15.0% |
| !! | ATCAAAAGAAAATATATGTT+TGG | + | chr3_3:86869213-86869232 | None:intergenic | 15.0% |
| !! | TGAAAGATATAAATATTTGA+TGG | - | chr3_3:86869280-86869299 | Msa0481120:intron | 15.0% |
| !! | GAAAGATATAAATATTTGAT+GGG | - | chr3_3:86869281-86869300 | Msa0481120:intron | 15.0% |
| !! | AAATTTGCATTAAAACTTTA+TGG | + | chr3_3:86869404-86869423 | None:intergenic | 15.0% |
| !! | CCATATAGAATTATATTATT+AGG | + | chr3_3:86869566-86869585 | None:intergenic | 15.0% |
| !! | CCTAATAATATAATTCTATA+TGG | - | chr3_3:86869563-86869582 | Msa0481120:intron | 15.0% |
| !! | AGATAATAATTTATGTTGAA+TGG | + | chr3_3:86870008-86870027 | None:intergenic | 15.0% |
| !! | AGATTATAGATCTAATTAAG+GGG | + | chr3_3:86867629-86867648 | None:intergenic | 20.0% |
| !! | GTAGTAAATAGAAAAAATCT+AGG | + | chr3_3:86867759-86867778 | None:intergenic | 20.0% |
| !!! | GTGTTTTATAGATTGAATTT+TGG | - | chr3_3:86867959-86867978 | Msa0481120:intron | 20.0% |
| !!! | AGTATTTAGTTTGTTAACTT+TGG | - | chr3_3:86868224-86868243 | Msa0481120:intron | 20.0% |
| !! | ATTCTCATAAAGATAGAATT+GGG | + | chr3_3:86868418-86868437 | None:intergenic | 20.0% |
| !! | TATTCTCATAAAGATAGAAT+TGG | + | chr3_3:86868419-86868438 | None:intergenic | 20.0% |
| !! | TGACTTATTCATAATACAAT+CGG | + | chr3_3:86868996-86869015 | None:intergenic | 20.0% |
| !! | AAAGTGATCTTATACATAAA+TGG | + | chr3_3:86869470-86869489 | None:intergenic | 20.0% |
| ! | CATAACTATGAGTTAGAAAT+TGG | + | chr3_3:86867726-86867745 | None:intergenic | 25.0% |
| !! | TTACTACTGTTTTCTTATTG+TGG | - | chr3_3:86867772-86867791 | Msa0481120:intron | 25.0% |
| ! | CAATCTATAAAACACATACA+CGG | + | chr3_3:86867954-86867973 | None:intergenic | 25.0% |
| !!! | AAATACTGTTTTTTCACTGA+GGG | + | chr3_3:86868211-86868230 | None:intergenic | 25.0% |
| !!! | TAAATACTGTTTTTTCACTG+AGG | + | chr3_3:86868212-86868231 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTTAACTTTGGAT+CGG | - | chr3_3:86868229-86868248 | Msa0481120:intron | 25.0% |
| ! | TAACACTATTAAAGTTCTTC+AGG | + | chr3_3:86868300-86868319 | None:intergenic | 25.0% |
| ! | AACATTTACACAATTTAGCA+TGG | + | chr3_3:86868457-86868476 | None:intergenic | 25.0% |
| !! | TTATGTTTTCTTCTCTCATA+TGG | - | chr3_3:86868535-86868554 | Msa0481120:intron | 25.0% |
| !!! | TTTTTTTTGTGATGTGGAAA+AGG | - | chr3_3:86868762-86868781 | Msa0481120:intron | 25.0% |
| !! | TATATCACTTCTAGAAAAGA+AGG | - | chr3_3:86869141-86869160 | Msa0481120:intron | 25.0% |
| !! | ATATCACTTCTAGAAAAGAA+GGG | - | chr3_3:86869142-86869161 | Msa0481120:intron | 25.0% |
| !!! | AAATATTTGATGGGTTTGAT+AGG | - | chr3_3:86869290-86869309 | Msa0481120:intron | 25.0% |
| !!! | AATATTTGATGGGTTTGATA+GGG | - | chr3_3:86869291-86869310 | Msa0481120:intron | 25.0% |
| ! | ATTATATTATTAGGCTTAGC+AGG | + | chr3_3:86869557-86869576 | None:intergenic | 25.0% |
| ! | ACACAATTCAATCATTAACT+AGG | + | chr3_3:86869613-86869632 | None:intergenic | 25.0% |
| ! | TAATGATTGAATTGTGTTCA+TGG | - | chr3_3:86869616-86869635 | Msa0481120:intron | 25.0% |
| ! | CCAAATAGAAATAAACAAAG+TGG | + | chr3_3:86869687-86869706 | None:intergenic | 25.0% |
| !!! | CCACTTTGTTTATTTCTATT+TGG | - | chr3_3:86869684-86869703 | Msa0481120:CDS | 25.0% |
| ! | ATATCTAATTTCATGCAAAC+TGG | - | chr3_3:86869869-86869888 | Msa0481120:exon | 25.0% |
| ! | TATCTAATTTCATGCAAACT+GGG | - | chr3_3:86869870-86869889 | Msa0481120:exon | 25.0% |
| !!! | TTGGTTCTTGGATTTTAACT+CGG | + | chr3_3:86867092-86867111 | None:intergenic | 30.0% |
| AATTGAATTAGGCATTTGAG+AGG | - | chr3_3:86867497-86867516 | Msa0481120:intron | 30.0% | |
| TGTGTAGTTAACAAAATGGA+AGG | - | chr3_3:86867795-86867814 | Msa0481120:intron | 30.0% | |
| AAAGAACACAGAATACAAAG+TGG | + | chr3_3:86868097-86868116 | None:intergenic | 30.0% | |
| AAACAGGTATGTCGTTAAAT+TGG | + | chr3_3:86868182-86868201 | None:intergenic | 30.0% | |
| AATTTAACGACATACCTGTT+TGG | - | chr3_3:86868181-86868200 | Msa0481120:intron | 30.0% | |
| !!! | AATACTGTTTTTTCACTGAG+GGG | + | chr3_3:86868210-86868229 | None:intergenic | 30.0% |
| ! | CTGTGAACAGAAAAATGTTT+TGG | + | chr3_3:86868353-86868372 | None:intergenic | 30.0% |
| ATCTTTCATTCTACACTTCA+TGG | + | chr3_3:86869268-86869287 | None:intergenic | 30.0% | |
| CATTAAAACTTTATGGCTTC+TGG | + | chr3_3:86869397-86869416 | None:intergenic | 30.0% | |
| AAATGGCATGATATTTGTGA+TGG | + | chr3_3:86869453-86869472 | None:intergenic | 30.0% | |
| ! | GGAAATTTCTTTCTTTTTGC+AGG | - | chr3_3:86869637-86869656 | Msa0481120:intron | 30.0% |
| TTGTAAAAAGTTTGTGCTAG+TGG | + | chr3_3:86869832-86869851 | None:intergenic | 30.0% | |
| ! | AATTAGATTCTCCTTGCTGT+TGG | + | chr3_3:86867111-86867130 | None:intergenic | 35.0% |
| ! | AACAAGTGGTTTTCGATCTT+CGG | + | chr3_3:86867265-86867284 | None:intergenic | 35.0% |
| TGTTGCAGAGACTATAAAGA+AGG | - | chr3_3:86867537-86867556 | Msa0481120:intron | 35.0% | |
| TAAAGAAGGAGTTTGACAAG+AGG | - | chr3_3:86867551-86867570 | Msa0481120:intron | 35.0% | |
| TGTATTGTTGGTCGCAATTT+CGG | - | chr3_3:86867592-86867611 | Msa0481120:intron | 35.0% | |
| GTGGTGTGTAGTTAACAAAA+TGG | - | chr3_3:86867791-86867810 | Msa0481120:intron | 35.0% | |
| !! | ATTAAATTCTAAGGCGTGTC+TGG | - | chr3_3:86867848-86867867 | Msa0481120:intron | 35.0% |
| !!! | CTTTTCGAGTTATTTCTACC+TGG | - | chr3_3:86867991-86868010 | Msa0481120:intron | 35.0% |
| GAGATGAGTAATTCTTGAGT+GGG | - | chr3_3:86868013-86868032 | Msa0481120:intron | 35.0% | |
| AGATGAGTAATTCTTGAGTG+GGG | - | chr3_3:86868014-86868033 | Msa0481120:intron | 35.0% | |
| TTGTATTCTGTGTTCTTTGC+AGG | - | chr3_3:86868099-86868118 | Msa0481120:intron | 35.0% | |
| TGTATTCTGTGTTCTTTGCA+GGG | - | chr3_3:86868100-86868119 | Msa0481120:intron | 35.0% | |
| TTGGAATGATAAACTGACAC+AGG | + | chr3_3:86868163-86868182 | None:intergenic | 35.0% | |
| AAGATGTTGGATGTCGAAAA+GGG | + | chr3_3:86868389-86868408 | None:intergenic | 35.0% | |
| AATTGGGAACAACAAGATGT+TGG | + | chr3_3:86868402-86868421 | None:intergenic | 35.0% | |
| ! | CAGTAAATAACAAAGTGCCA+CGG | + | chr3_3:86868510-86868529 | None:intergenic | 35.0% |
| TGAAGTCTAATACATCTGAG+AGG | - | chr3_3:86868665-86868684 | Msa0481120:intron | 35.0% | |
| GACACACACAAAATGTATTG+AGG | + | chr3_3:86869045-86869064 | None:intergenic | 35.0% | |
| GTTCCAGTTTCAAAATACCA+GGG | + | chr3_3:86869083-86869102 | None:intergenic | 35.0% | |
| !!! | CTGGTATTTTGAAACTGGAA+CGG | - | chr3_3:86869082-86869101 | Msa0481120:intron | 35.0% |
| ! | TTCTAGAAAAGAAGGGTCAA+GGG | - | chr3_3:86869149-86869168 | Msa0481120:intron | 35.0% |
| ! | TTTCTTTTGATGTCAGCCTT+AGG | - | chr3_3:86869222-86869241 | Msa0481120:intron | 35.0% |
| ! | TTCTTTTGATGTCAGCCTTA+GGG | - | chr3_3:86869223-86869242 | Msa0481120:intron | 35.0% |
| CAATTGCCATAAATTCCCTA+AGG | + | chr3_3:86869241-86869260 | None:intergenic | 35.0% | |
| GCATGATATTTGTGATGGTT+TGG | + | chr3_3:86869448-86869467 | None:intergenic | 35.0% | |
| TCAGACTGCTATATCAAATG+AGG | - | chr3_3:86869516-86869535 | Msa0481120:CDS | 35.0% | |
| CAAATGAGGATATGATTGTC+TGG | - | chr3_3:86869530-86869549 | Msa0481120:CDS | 35.0% | |
| GTTTGTTTCATGAGTCACAT+AGG | + | chr3_3:86869665-86869684 | None:intergenic | 35.0% | |
| ! | TTTTTGCCTCCATCAGAATA+AGG | + | chr3_3:86869745-86869764 | None:intergenic | 35.0% |
| TGAATGGAATGGAACACAAA+GGG | + | chr3_3:86869942-86869961 | None:intergenic | 35.0% | |
| TCCATTCCATTCACATGTAT+TGG | - | chr3_3:86869949-86869968 | Msa0481120:five_prime_UTR | 35.0% | |
| CCATTCCATTCACATGTATT+GGG | - | chr3_3:86869950-86869969 | Msa0481120:five_prime_UTR | 35.0% | |
| GAATTCCCAATACATGTGAA+TGG | + | chr3_3:86869958-86869977 | None:intergenic | 35.0% | |
| AAATCCAAGAACCAACAGCA+AGG | - | chr3_3:86867097-86867116 | Msa0481120:three_prime_UTR | 40.0% | |
| TACCTAATTCTCTCTCTTGC+AGG | + | chr3_3:86867171-86867190 | None:intergenic | 40.0% | |
| TAGGTAAAGAAAGATGAGCG+AGG | - | chr3_3:86867185-86867204 | Msa0481120:three_prime_UTR | 40.0% | |
| ATAATGACCTTCTTCGTTGC+GGG | + | chr3_3:86867324-86867343 | None:intergenic | 40.0% | |
| GATAATGACCTTCTTCGTTG+CGG | + | chr3_3:86867325-86867344 | None:intergenic | 40.0% | |
| AACAACGACAGCGATATCAA+CGG | + | chr3_3:86867385-86867404 | None:intergenic | 40.0% | |
| CCAACAATACAATGCCAAGT+AGG | + | chr3_3:86867583-86867602 | None:intergenic | 40.0% | |
| CCTACTTGGCATTGTATTGT+TGG | - | chr3_3:86867580-86867599 | Msa0481120:intron | 40.0% | |
| CTCAAGAATTACTCATCTCC+AGG | + | chr3_3:86868012-86868031 | None:intergenic | 40.0% | |
| GGAGATGAGTAATTCTTGAG+TGG | - | chr3_3:86868012-86868031 | Msa0481120:intron | 40.0% | |
| ! | AATTCTTGAGTGGGGTACTT+AGG | - | chr3_3:86868022-86868041 | Msa0481120:intron | 40.0% |
| ! | ATTCTTGAGTGGGGTACTTA+GGG | - | chr3_3:86868023-86868042 | Msa0481120:intron | 40.0% |
| GAGTTTGATCGTAGTGGTAT+AGG | - | chr3_3:86868070-86868089 | Msa0481120:intron | 40.0% | |
| GTATTCTGTGTTCTTTGCAG+GGG | - | chr3_3:86868101-86868120 | Msa0481120:intron | 40.0% | |
| TATTCTGTGTTCTTTGCAGG+GGG | - | chr3_3:86868102-86868121 | Msa0481120:intron | 40.0% | |
| TGGGATAGAATAGGCTTGAT+AGG | - | chr3_3:86868268-86868287 | Msa0481120:intron | 40.0% | |
| GGGATAGAATAGGCTTGATA+GGG | - | chr3_3:86868269-86868288 | Msa0481120:intron | 40.0% | |
| CAAGATGTTGGATGTCGAAA+AGG | + | chr3_3:86868390-86868409 | None:intergenic | 40.0% | |
| ACACAATTTAGCATGGCGTT+TGG | + | chr3_3:86868450-86868469 | None:intergenic | 40.0% | |
| ! | TTTCAAGTCGAGTTAATCCG+TGG | - | chr3_3:86868490-86868509 | Msa0481120:intron | 40.0% |
| AGTCTAATACATCTGAGAGG+AGG | - | chr3_3:86868668-86868687 | Msa0481120:intron | 40.0% | |
| GTCTAATACATCTGAGAGGA+GGG | - | chr3_3:86868669-86868688 | Msa0481120:intron | 40.0% | |
| ! | AATTTGAGACTCAAGCAGTG+CGG | + | chr3_3:86868848-86868867 | None:intergenic | 40.0% |
| GACAGGAGTAGAAATCACAT+AGG | + | chr3_3:86868882-86868901 | None:intergenic | 40.0% | |
| GTTAAGATGTGCAGAATGAC+AGG | + | chr3_3:86868899-86868918 | None:intergenic | 40.0% | |
| CGTTCCAGTTTCAAAATACC+AGG | + | chr3_3:86869084-86869103 | None:intergenic | 40.0% | |
| GAAACTGGAACGGCTAATAA+CGG | - | chr3_3:86869092-86869111 | Msa0481120:intron | 40.0% | |
| ! | CTTCTAGAAAAGAAGGGTCA+AGG | - | chr3_3:86869148-86869167 | Msa0481120:intron | 40.0% |
| TGTCAGCCTTAGGGAATTTA+TGG | - | chr3_3:86869232-86869251 | Msa0481120:intron | 40.0% | |
| !! | TTTGATGGGTTTGATAGGGA+TGG | - | chr3_3:86869295-86869314 | Msa0481120:intron | 40.0% |
| ATCAAAGCTTGGACTAAGCT+CGG | - | chr3_3:86869348-86869367 | Msa0481120:intron | 40.0% | |
| !!! | GCAGTTTTGCTTTTCAAGTC+TGG | - | chr3_3:86869715-86869734 | Msa0481120:CDS | 40.0% |
| GTGAATGGAATGGAACACAA+AGG | + | chr3_3:86869943-86869962 | None:intergenic | 40.0% | |
| CCCAATACATGTGAATGGAA+TGG | + | chr3_3:86869953-86869972 | None:intergenic | 40.0% | |
| !! | TTCTCCTTGCTGTTGGTTCT+TGG | + | chr3_3:86867104-86867123 | None:intergenic | 45.0% |
| CACCTGCAAGAGAGAGAATT+AGG | - | chr3_3:86867166-86867185 | Msa0481120:three_prime_UTR | 45.0% | |
| GTAAAGAAAGATGAGCGAGG+AGG | - | chr3_3:86867188-86867207 | Msa0481120:three_prime_UTR | 45.0% | |
| ! | TGGTTTTCGATCTTCGGTGA+GGG | + | chr3_3:86867259-86867278 | None:intergenic | 45.0% |
| GAGAGTGGAGATGTAACAAG+TGG | + | chr3_3:86867279-86867298 | None:intergenic | 45.0% | |
| ! | TTGCATGTCAGGGAGCATAT+CGG | + | chr3_3:86867355-86867374 | None:intergenic | 45.0% |
| TATGCTCCCTGACATGCAAA+AGG | - | chr3_3:86867356-86867375 | Msa0481120:CDS | 45.0% | |
| AAGGAGTTTGACAAGAGGCA+TGG | - | chr3_3:86867556-86867575 | Msa0481120:intron | 45.0% | |
| CCACTACGATCAAACTCAGT+TGG | + | chr3_3:86868067-86868086 | None:intergenic | 45.0% | |
| CCAACTGAGTTTGATCGTAG+TGG | - | chr3_3:86868064-86868083 | Msa0481120:intron | 45.0% | |
| CTATTCCGTGGAAGAGGAAA+AGG | + | chr3_3:86868137-86868156 | None:intergenic | 45.0% | |
| GTGTGTGCTTGGGATAGAAT+AGG | - | chr3_3:86868259-86868278 | Msa0481120:intron | 45.0% | |
| TTAGCATGGCGTTTGGACTA+TGG | + | chr3_3:86868443-86868462 | None:intergenic | 45.0% | |
| ! | ATTTGAGACTCAAGCAGTGC+GGG | + | chr3_3:86868847-86868866 | None:intergenic | 45.0% |
| !!! | AAGCTTAAGTCGCTTTTGCG+TGG | + | chr3_3:86868921-86868940 | None:intergenic | 45.0% |
| ! | CGGAGTTGTTTGCTGAACTT+AGG | - | chr3_3:86868967-86868986 | Msa0481120:intron | 45.0% |
| !!! | GCTCCCTGGTATTTTGAAAC+TGG | - | chr3_3:86869077-86869096 | Msa0481120:intron | 45.0% |
| ! | GTCCAAGCTTTGATTGTGCT+GGG | + | chr3_3:86869342-86869361 | None:intergenic | 45.0% |
| ! | AGTCCAAGCTTTGATTGTGC+TGG | + | chr3_3:86869343-86869362 | None:intergenic | 45.0% |
| TCAAAGCTTGGACTAAGCTC+GGG | - | chr3_3:86869349-86869368 | Msa0481120:intron | 45.0% | |
| !! | TCTGGCTAGCCTTATTCTGA+TGG | - | chr3_3:86869733-86869752 | Msa0481120:CDS | 45.0% |
| GCAAACTGGGTTCTCAAGTT+TGG | - | chr3_3:86869883-86869902 | Msa0481120:exon | 45.0% | |
| !! | AAAAAAAAAATATAGTATAT+TGG | + | chr3_3:86868747-86868766 | None:intergenic | 5.0% |
| ACTGTGTGTGTGTGTGTGTG+TGG | + | chr3_3:86867146-86867165 | None:intergenic | 50.0% | |
| !! | AGGTGGAGGAGCATCTCTAA+TGG | - | chr3_3:86867227-86867246 | Msa0481120:three_prime_UTR | 50.0% |
| ! | GTGGTTTTCGATCTTCGGTG+AGG | + | chr3_3:86867260-86867279 | None:intergenic | 50.0% |
| ! | CGGCTTCCTTTTGCATGTCA+GGG | + | chr3_3:86867365-86867384 | None:intergenic | 50.0% |
| ! | ACGGCTTCCTTTTGCATGTC+AGG | + | chr3_3:86867366-86867385 | None:intergenic | 50.0% |
| ! | ACAAGAGGCATGGTCCTACT+TGG | - | chr3_3:86867566-86867585 | Msa0481120:intron | 50.0% |
| ! | GGGGTACTTAGGGATGACAA+TGG | - | chr3_3:86868033-86868052 | Msa0481120:intron | 50.0% |
| ! | GTGTTCTTTGCAGGGGGTTT+TGG | - | chr3_3:86868108-86868127 | Msa0481120:intron | 50.0% |
| ! | GGTGTCCTTTTCCTCTTCCA+CGG | - | chr3_3:86868129-86868148 | Msa0481120:intron | 50.0% |
| TCACTGAGGGGAAACCAAAC+AGG | + | chr3_3:86868198-86868217 | None:intergenic | 50.0% | |
| TCGGATTGAGTGTGTGTGCT+TGG | - | chr3_3:86868248-86868267 | Msa0481120:intron | 50.0% | |
| CGGATTGAGTGTGTGTGCTT+GGG | - | chr3_3:86868249-86868268 | Msa0481120:intron | 50.0% | |
| GTTCTGCTCAGCAATATCGC+AGG | + | chr3_3:86868621-86868640 | None:intergenic | 50.0% | |
| TGTGTGTGTCAAGAGTCCTC+TGG | - | chr3_3:86869055-86869074 | Msa0481120:intron | 50.0% | |
| TCAAAATACCAGGGAGCCAG+AGG | + | chr3_3:86869074-86869093 | None:intergenic | 50.0% | |
| TAGGGATGGAGAGACTGCAA+AGG | - | chr3_3:86869309-86869328 | Msa0481120:intron | 50.0% | |
| AGCCCAGCACAATCAAAGCT+TGG | - | chr3_3:86869337-86869356 | Msa0481120:intron | 50.0% | |
| AGCTCGGGTTTCAGATACCA+TGG | - | chr3_3:86869364-86869383 | Msa0481120:intron | 50.0% | |
| !! | TGGCTTCTGGAACATCACCA+TGG | + | chr3_3:86869384-86869403 | None:intergenic | 50.0% |
| !! | GGCTAGCCTTATTCTGATGG+AGG | - | chr3_3:86869736-86869755 | Msa0481120:CDS | 50.0% |
| ! | TTCTTCGTTGCGGGTGTTGC+AGG | + | chr3_3:86867315-86867334 | None:intergenic | 55.0% |
| TGCAACACCCGCAACGAAGA+AGG | - | chr3_3:86867314-86867333 | Msa0481120:three_prime_UTR | 55.0% | |
| AGGCAGCTATTCCGTGGAAG+AGG | + | chr3_3:86868143-86868162 | None:intergenic | 55.0% | |
| TGACACAGGCAGCTATTCCG+TGG | + | chr3_3:86868149-86868168 | None:intergenic | 55.0% | |
| ! | GGTCAAGGGAGTGTGATCTC+TGG | - | chr3_3:86869163-86869182 | Msa0481120:intron | 55.0% |
| ! | AAGAAGCACAGCGCAGGTGG+AGG | - | chr3_3:86867213-86867232 | Msa0481120:three_prime_UTR | 60.0% |
| GGAGAAGCGGATGCAGAGAG+TGG | + | chr3_3:86867294-86867313 | None:intergenic | 60.0% | |
| ! | TGCGGGTGTTGCAGGAGAAG+CGG | + | chr3_3:86867307-86867326 | None:intergenic | 60.0% |
| ! | TCAAGAGTCCTCTGGCTCCC+TGG | - | chr3_3:86869063-86869082 | Msa0481120:intron | 60.0% |
| ! | GAGGCGAAGAAGCACAGCGC+AGG | - | chr3_3:86867207-86867226 | Msa0481120:three_prime_UTR | 65.0% |
| ! | GCGAAGAAGCACAGCGCAGG+TGG | - | chr3_3:86867210-86867229 | Msa0481120:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 86867048 | 86870033 | 86867048 | ID=Msa0481120;Name=Msa0481120 |
| chr3_3 | mRNA | 86867048 | 86870033 | 86867048 | ID=Msa0481120-mRNA-1;Parent=Msa0481120;Name=Msa0481120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=150|1|1|1|1|1|3|292|130 |
| chr3_3 | exon | 86867048 | 86867422 | 86867048 | ID=Msa0481120-mRNA-1:exon:25123;Parent=Msa0481120-mRNA-1 |
| chr3_3 | exon | 86869468 | 86869573 | 86869468 | ID=Msa0481120-mRNA-1:exon:25122;Parent=Msa0481120-mRNA-1 |
| chr3_3 | exon | 86869680 | 86870033 | 86869680 | ID=Msa0481120-mRNA-1:exon:25121;Parent=Msa0481120-mRNA-1 |
| chr3_3 | five_prime_UTR | 86869884 | 86870033 | 86869884 | ID=Msa0481120-mRNA-1:five_prime_utr;Parent=Msa0481120-mRNA-1 |
| chr3_3 | CDS | 86869680 | 86869883 | 86869680 | ID=Msa0481120-mRNA-1:cds;Parent=Msa0481120-mRNA-1 |
| chr3_3 | CDS | 86869468 | 86869573 | 86869468 | ID=Msa0481120-mRNA-1:cds;Parent=Msa0481120-mRNA-1 |
| chr3_3 | CDS | 86867340 | 86867422 | 86867340 | ID=Msa0481120-mRNA-1:cds;Parent=Msa0481120-mRNA-1 |
| chr3_3 | three_prime_UTR | 86867048 | 86867339 | 86867048 | ID=Msa0481120-mRNA-1:three_prime_utr;Parent=Msa0481120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
