Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217930 | XP_003609697.1 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 4.24e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217930 | sp|Q78P75|DYL2_RAT | 68.605 | 86 | 27 | 0 | 45 | 130 | 4 | 89 | 2.20e-42 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0481120 | Msa1217930 | 0.990540 | 4.030804e-183 | -8.615850e-47 |
| Msa1217770 | Msa1217930 | 0.880186 | 6.755561e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217930 | MtrunA17_Chr4g0067531 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 3.90e-94 | 267 |
| Msa1217930 | MtrunA17_Chr8g0360861 | 48.837 | 86 | 42 | 1 | 46 | 129 | 5 | 90 | 2.55e-26 | 95.1 |
| Msa1217930 | MtrunA17_Chr4g0059791 | 52.439 | 82 | 36 | 2 | 51 | 129 | 220 | 301 | 4.52e-21 | 85.9 |
| Msa1217930 | MtrunA17_Chr8g0391451 | 43.478 | 92 | 38 | 2 | 47 | 129 | 54 | 140 | 1.48e-18 | 76.3 |
| Msa1217930 | MtrunA17_Chr4g0063491 | 46.591 | 88 | 39 | 3 | 46 | 129 | 155 | 238 | 7.33e-18 | 76.6 |
| Msa1217930 | MtrunA17_Chr2g0331651 | 40.698 | 86 | 49 | 1 | 46 | 129 | 5 | 90 | 8.23e-17 | 70.1 |
| Msa1217930 | MtrunA17_Chr6g0485891 | 37.647 | 85 | 51 | 1 | 46 | 128 | 39 | 123 | 4.51e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217930 | AT4G15930.1 | 66.923 | 130 | 36 | 3 | 1 | 130 | 1 | 123 | 1.07e-57 | 175 |
| Msa1217930 | AT4G15930.2 | 58.654 | 104 | 36 | 3 | 1 | 104 | 1 | 97 | 1.07e-35 | 118 |
| Msa1217930 | AT5G20110.1 | 49.425 | 87 | 38 | 2 | 47 | 129 | 117 | 201 | 1.38e-19 | 80.9 |
| Msa1217930 | AT1G23220.1 | 42.529 | 87 | 47 | 1 | 47 | 130 | 36 | 122 | 2.53e-18 | 75.5 |
| Msa1217930 | AT1G52245.1 | 40.698 | 86 | 49 | 1 | 46 | 129 | 5 | 90 | 1.03e-17 | 72.8 |
| Msa1217930 | AT4G27360.1 | 38.824 | 85 | 50 | 1 | 46 | 128 | 5 | 89 | 9.39e-17 | 70.9 |
| Msa1217930 | AT3G16120.2 | 39.759 | 83 | 48 | 1 | 49 | 129 | 8 | 90 | 2.47e-16 | 69.3 |
| Msa1217930 | AT3G16120.1 | 39.759 | 83 | 48 | 1 | 49 | 129 | 8 | 90 | 2.47e-16 | 69.3 |
Find 44 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTTTGTTTATTTCTATT+TGG | 0.134093 | 8_1:+80480464 | Msa1217930:CDS |
| TTCTCCTTGCTGTTGGTTCT+TGG | 0.178456 | 8_1:-80477881 | None:intergenic |
| TACCTAATTCTCTCTCTTGC+AGG | 0.259833 | 8_1:-80477948 | None:intergenic |
| GCAAACTGGGTTCTCAAGTT+TGG | 0.292328 | 8_1:+80480663 | Msa1217930:three_prime_UTR |
| TTCTTCGTTGCGGGTGTTGC+AGG | 0.303894 | 8_1:-80478092 | None:intergenic |
| CCATTCCATTCACATGTATT+GGG | 0.311028 | 8_1:+80480730 | Msa1217930:three_prime_UTR |
| ATAATGACCTTCTTCGTTGC+GGG | 0.323218 | 8_1:-80478101 | None:intergenic |
| TCCATTCCATTCACATGTAT+TGG | 0.327294 | 8_1:+80480729 | Msa1217930:three_prime_UTR |
| TGTATTGTTGGTCGCAATTT+CGG | 0.332097 | 8_1:+80478372 | Msa1217930:CDS |
| CACCTGCAAGAGAGAGAATT+AGG | 0.341950 | 8_1:+80477946 | Msa1217930:five_prime_UTR |
| AGATAATAATTTATGTTGAA+TGG | 0.341950 | 8_1:-80480785 | None:intergenic |
| ATATCTAATTTCATGCAAAC+TGG | 0.351170 | 8_1:+80480649 | Msa1217930:three_prime_UTR |
| CCTACTTGGCATTGTATTGT+TGG | 0.395219 | 8_1:+80478360 | Msa1217930:CDS |
| ACAAGAGGCATGGTCCTACT+TGG | 0.447517 | 8_1:+80478346 | Msa1217930:CDS |
| AAGAAGCACAGCGCAGGTGG+AGG | 0.466246 | 8_1:+80477993 | Msa1217930:CDS |
| GCGAAGAAGCACAGCGCAGG+TGG | 0.479599 | 8_1:+80477990 | Msa1217930:CDS |
| AATTAGATTCTCCTTGCTGT+TGG | 0.495644 | 8_1:-80477888 | None:intergenic |
| GAATTCCCAATACATGTGAA+TGG | 0.495884 | 8_1:-80480735 | None:intergenic |
| GAGGCGAAGAAGCACAGCGC+AGG | 0.496399 | 8_1:+80477987 | Msa1217930:CDS |
| AGGTGGAGGAGCATCTCTAA+TGG | 0.510524 | 8_1:+80478007 | Msa1217930:CDS |
| TGCAACACCCGCAACGAAGA+AGG | 0.520232 | 8_1:+80478094 | Msa1217930:CDS |
| TTGCATGTCAGGGAGCATAT+CGG | 0.526660 | 8_1:-80478132 | None:intergenic |
| TGTTGCAGAGACTATAAAGA+AGG | 0.528953 | 8_1:+80478317 | Msa1217930:CDS |
| CCCAATACATGTGAATGGAA+TGG | 0.535113 | 8_1:-80480730 | None:intergenic |
| TGAATGGAATGGAACACAAA+GGG | 0.537376 | 8_1:-80480719 | None:intergenic |
| GTTTGTTTCATGAGTCACAT+AGG | 0.542936 | 8_1:-80480442 | None:intergenic |
| TGCGGGTGTTGCAGGAGAAG+CGG | 0.546280 | 8_1:-80478084 | None:intergenic |
| TCTGGCTAGCCTTATTCTGA+TGG | 0.546660 | 8_1:+80480513 | Msa1217930:exon |
| TATGCTCCCTGACATGCAAA+AGG | 0.547026 | 8_1:+80478136 | Msa1217930:CDS |
| TATCTAATTTCATGCAAACT+GGG | 0.565835 | 8_1:+80480650 | Msa1217930:three_prime_UTR |
| GATAATGACCTTCTTCGTTG+CGG | 0.566862 | 8_1:-80478102 | None:intergenic |
| GGAGAAGCGGATGCAGAGAG+TGG | 0.576599 | 8_1:-80478071 | None:intergenic |
| CCAAATAGAAATAAACAAAG+TGG | 0.592216 | 8_1:-80480464 | None:intergenic |
| CCAACAATACAATGCCAAGT+AGG | 0.596782 | 8_1:-80478360 | None:intergenic |
| AATTGAATTAGGCATTTGAG+AGG | 0.599018 | 8_1:+80478277 | Msa1217930:intron |
| GGCTAGCCTTATTCTGATGG+AGG | 0.621751 | 8_1:+80480516 | Msa1217930:exon |
| TAGGTAAAGAAAGATGAGCG+AGG | 0.624160 | 8_1:+80477965 | Msa1217930:exon |
| AAGGAGTTTGACAAGAGGCA+TGG | 0.631606 | 8_1:+80478336 | Msa1217930:CDS |
| AAATCCAAGAACCAACAGCA+AGG | 0.645600 | 8_1:+80477877 | Msa1217930:five_prime_UTR |
| GTGAATGGAATGGAACACAA+AGG | 0.653029 | 8_1:-80480720 | None:intergenic |
| GAGAGTGGAGATGTAACAAG+TGG | 0.663410 | 8_1:-80478056 | None:intergenic |
| AACAACGACAGCGATATCAA+CGG | 0.685652 | 8_1:-80478162 | None:intergenic |
| TAAAGAAGGAGTTTGACAAG+AGG | 0.686443 | 8_1:+80478331 | Msa1217930:CDS |
| GTAAAGAAAGATGAGCGAGG+AGG | 0.700815 | 8_1:+80477968 | Msa1217930:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAAATTAAATTCTA+AGG | + | chr8_1:80478619-80478638 | Msa1217930:intron | 10.0% |
| !! | AAATTAGAAAAAATTGAAGA+AGG | - | chr8_1:80478222-80478241 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGAAATTGAATT+AGG | + | chr8_1:80478266-80478285 | Msa1217930:intron | 15.0% |
| !! | TAGATTATAGATCTAATTAA+GGG | - | chr8_1:80478410-80478429 | None:intergenic | 15.0% |
| !! | ATAGATTATAGATCTAATTA+AGG | - | chr8_1:80478411-80478430 | None:intergenic | 15.0% |
| !!! | CTAACAACAATTTTAAAAAA+TGG | - | chr8_1:80478681-80478700 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTTTGTGATG+TGG | + | chr8_1:80479536-80479555 | Msa1217930:intron | 15.0% |
| !! | TATAAGTTTGATATTATGAA+CGG | + | chr8_1:80479727-80479746 | Msa1217930:intron | 15.0% |
| !! | ATCAAAAGAAAATATATGTT+TGG | - | chr8_1:80479993-80480012 | None:intergenic | 15.0% |
| !! | TGAAAGATATAAATATTTGA+TGG | + | chr8_1:80480060-80480079 | Msa1217930:intron | 15.0% |
| !! | GAAAGATATAAATATTTGAT+GGG | + | chr8_1:80480061-80480080 | Msa1217930:intron | 15.0% |
| !! | AAATTTGCATTAAAACTTTA+TGG | - | chr8_1:80480184-80480203 | None:intergenic | 15.0% |
| !! | CCATATAGAATTATATTATT+AGG | - | chr8_1:80480346-80480365 | None:intergenic | 15.0% |
| !! | CCTAATAATATAATTCTATA+TGG | + | chr8_1:80480343-80480362 | Msa1217930:intron | 15.0% |
| !! | AGATAATAATTTATGTTGAA+TGG | - | chr8_1:80480788-80480807 | None:intergenic | 15.0% |
| !! | AGATTATAGATCTAATTAAG+GGG | - | chr8_1:80478409-80478428 | None:intergenic | 20.0% |
| !! | GTAGTAAATAGAAAAAATCT+AGG | - | chr8_1:80478539-80478558 | None:intergenic | 20.0% |
| !!! | GTGTTTTATAGATTGAATTT+TGG | + | chr8_1:80478739-80478758 | Msa1217930:intron | 20.0% |
| !!! | AGTATTTAGTTTGTTAACTT+TGG | + | chr8_1:80479004-80479023 | Msa1217930:intron | 20.0% |
| !! | ATTCTCATAAAGATAGAATT+GGG | - | chr8_1:80479198-80479217 | None:intergenic | 20.0% |
| !! | TATTCTCATAAAGATAGAAT+TGG | - | chr8_1:80479199-80479218 | None:intergenic | 20.0% |
| !! | TGACTTATTCATAATACAAT+CGG | - | chr8_1:80479776-80479795 | None:intergenic | 20.0% |
| !! | AAAGTGATCTTATACATAAA+TGG | - | chr8_1:80480250-80480269 | None:intergenic | 20.0% |
| ! | CATAACTATGAGTTAGAAAT+TGG | - | chr8_1:80478506-80478525 | None:intergenic | 25.0% |
| !! | TTACTACTGTTTTCTTATTG+TGG | + | chr8_1:80478552-80478571 | Msa1217930:intron | 25.0% |
| ! | CAATCTATAAAACACATACA+CGG | - | chr8_1:80478734-80478753 | None:intergenic | 25.0% |
| !!! | AAATACTGTTTTTTCACTGA+GGG | - | chr8_1:80478991-80479010 | None:intergenic | 25.0% |
| !!! | TAAATACTGTTTTTTCACTG+AGG | - | chr8_1:80478992-80479011 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTTAACTTTGGAT+CGG | + | chr8_1:80479009-80479028 | Msa1217930:intron | 25.0% |
| ! | TAACACTATTAAAGTTCTTC+AGG | - | chr8_1:80479080-80479099 | None:intergenic | 25.0% |
| ! | AACATTTACACAATTTAGCA+TGG | - | chr8_1:80479237-80479256 | None:intergenic | 25.0% |
| !! | TTATGTTTTCTTCTCTCATA+TGG | + | chr8_1:80479315-80479334 | Msa1217930:intron | 25.0% |
| !!! | TTTTTTTTGTGATGTGGAAA+AGG | + | chr8_1:80479542-80479561 | Msa1217930:intron | 25.0% |
| !! | TATATCACTTCTAGAAAAGA+AGG | + | chr8_1:80479921-80479940 | Msa1217930:intron | 25.0% |
| !! | ATATCACTTCTAGAAAAGAA+GGG | + | chr8_1:80479922-80479941 | Msa1217930:intron | 25.0% |
| !!! | AAATATTTGATGGGTTTGAT+AGG | + | chr8_1:80480070-80480089 | Msa1217930:intron | 25.0% |
| !!! | AATATTTGATGGGTTTGATA+GGG | + | chr8_1:80480071-80480090 | Msa1217930:intron | 25.0% |
| ! | ATTATATTATTAGGCTTAGC+AGG | - | chr8_1:80480337-80480356 | None:intergenic | 25.0% |
| ! | ACACAATTCAATCATTAACT+AGG | - | chr8_1:80480393-80480412 | None:intergenic | 25.0% |
| ! | TAATGATTGAATTGTGTTCA+TGG | + | chr8_1:80480396-80480415 | Msa1217930:intron | 25.0% |
| ! | CCAAATAGAAATAAACAAAG+TGG | - | chr8_1:80480467-80480486 | None:intergenic | 25.0% |
| !!! | CCACTTTGTTTATTTCTATT+TGG | + | chr8_1:80480464-80480483 | Msa1217930:CDS | 25.0% |
| ! | ATATCTAATTTCATGCAAAC+TGG | + | chr8_1:80480649-80480668 | Msa1217930:three_prime_UTR | 25.0% |
| ! | TATCTAATTTCATGCAAACT+GGG | + | chr8_1:80480650-80480669 | Msa1217930:three_prime_UTR | 25.0% |
| !!! | TTGGTTCTTGGATTTTAACT+CGG | - | chr8_1:80477872-80477891 | None:intergenic | 30.0% |
| AATTGAATTAGGCATTTGAG+AGG | + | chr8_1:80478277-80478296 | Msa1217930:intron | 30.0% | |
| TGTGTAGTTAACAAAATGGA+AGG | + | chr8_1:80478575-80478594 | Msa1217930:intron | 30.0% | |
| AAAGAACACAGAATACAAAG+TGG | - | chr8_1:80478877-80478896 | None:intergenic | 30.0% | |
| AAACAGGTATGTCGTTAAAT+TGG | - | chr8_1:80478962-80478981 | None:intergenic | 30.0% | |
| AATTTAACGACATACCTGTT+TGG | + | chr8_1:80478961-80478980 | Msa1217930:intron | 30.0% | |
| !!! | AATACTGTTTTTTCACTGAG+GGG | - | chr8_1:80478990-80479009 | None:intergenic | 30.0% |
| ! | CTGTGAACAGAAAAATGTTT+TGG | - | chr8_1:80479133-80479152 | None:intergenic | 30.0% |
| ATCTTTCATTCTACACTTCA+TGG | - | chr8_1:80480048-80480067 | None:intergenic | 30.0% | |
| CATTAAAACTTTATGGCTTC+TGG | - | chr8_1:80480177-80480196 | None:intergenic | 30.0% | |
| AAATGGCATGATATTTGTGA+TGG | - | chr8_1:80480233-80480252 | None:intergenic | 30.0% | |
| ! | GGAAATTTCTTTCTTTTTGC+AGG | + | chr8_1:80480417-80480436 | Msa1217930:intron | 30.0% |
| TTGTAAAAAGTTTGTGCTAG+TGG | - | chr8_1:80480612-80480631 | None:intergenic | 30.0% | |
| ! | AATTAGATTCTCCTTGCTGT+TGG | - | chr8_1:80477891-80477910 | None:intergenic | 35.0% |
| ! | AACAAGTGGTTTTCGATCTT+CGG | - | chr8_1:80478045-80478064 | None:intergenic | 35.0% |
| TGTTGCAGAGACTATAAAGA+AGG | + | chr8_1:80478317-80478336 | Msa1217930:CDS | 35.0% | |
| TAAAGAAGGAGTTTGACAAG+AGG | + | chr8_1:80478331-80478350 | Msa1217930:CDS | 35.0% | |
| TGTATTGTTGGTCGCAATTT+CGG | + | chr8_1:80478372-80478391 | Msa1217930:CDS | 35.0% | |
| GTGGTGTGTAGTTAACAAAA+TGG | + | chr8_1:80478571-80478590 | Msa1217930:intron | 35.0% | |
| !! | ATTAAATTCTAAGGCGTGTC+TGG | + | chr8_1:80478628-80478647 | Msa1217930:intron | 35.0% |
| !!! | CTTTTCGAGTTATTTCTACC+TGG | + | chr8_1:80478771-80478790 | Msa1217930:intron | 35.0% |
| GAGATGAGTAATTCTTGAGT+GGG | + | chr8_1:80478793-80478812 | Msa1217930:intron | 35.0% | |
| AGATGAGTAATTCTTGAGTG+GGG | + | chr8_1:80478794-80478813 | Msa1217930:intron | 35.0% | |
| TTGTATTCTGTGTTCTTTGC+AGG | + | chr8_1:80478879-80478898 | Msa1217930:intron | 35.0% | |
| TGTATTCTGTGTTCTTTGCA+GGG | + | chr8_1:80478880-80478899 | Msa1217930:intron | 35.0% | |
| TTGGAATGATAAACTGACAC+AGG | - | chr8_1:80478943-80478962 | None:intergenic | 35.0% | |
| AAGATGTTGGATGTCGAAAA+GGG | - | chr8_1:80479169-80479188 | None:intergenic | 35.0% | |
| AATTGGGAACAACAAGATGT+TGG | - | chr8_1:80479182-80479201 | None:intergenic | 35.0% | |
| ! | CAGTAAATAACAAAGTGCCA+CGG | - | chr8_1:80479290-80479309 | None:intergenic | 35.0% |
| TGAAGTCTAATACATCTGAG+AGG | + | chr8_1:80479445-80479464 | Msa1217930:intron | 35.0% | |
| GACACACACAAAATGTATTG+AGG | - | chr8_1:80479825-80479844 | None:intergenic | 35.0% | |
| GTTCCAGTTTCAAAATACCA+GGG | - | chr8_1:80479863-80479882 | None:intergenic | 35.0% | |
| !!! | CTGGTATTTTGAAACTGGAA+CGG | + | chr8_1:80479862-80479881 | Msa1217930:intron | 35.0% |
| ! | TTCTAGAAAAGAAGGGTCAA+GGG | + | chr8_1:80479929-80479948 | Msa1217930:intron | 35.0% |
| ! | TTTCTTTTGATGTCAGCCTT+AGG | + | chr8_1:80480002-80480021 | Msa1217930:intron | 35.0% |
| ! | TTCTTTTGATGTCAGCCTTA+GGG | + | chr8_1:80480003-80480022 | Msa1217930:intron | 35.0% |
| CAATTGCCATAAATTCCCTA+AGG | - | chr8_1:80480021-80480040 | None:intergenic | 35.0% | |
| GCATGATATTTGTGATGGTT+TGG | - | chr8_1:80480228-80480247 | None:intergenic | 35.0% | |
| TCAGACTGCTATATCAAATG+AGG | + | chr8_1:80480296-80480315 | Msa1217930:intron | 35.0% | |
| CAAATGAGGATATGATTGTC+TGG | + | chr8_1:80480310-80480329 | Msa1217930:intron | 35.0% | |
| GTTTGTTTCATGAGTCACAT+AGG | - | chr8_1:80480445-80480464 | None:intergenic | 35.0% | |
| ! | TTTTTGCCTCCATCAGAATA+AGG | - | chr8_1:80480525-80480544 | None:intergenic | 35.0% |
| TGAATGGAATGGAACACAAA+GGG | - | chr8_1:80480722-80480741 | None:intergenic | 35.0% | |
| TCCATTCCATTCACATGTAT+TGG | + | chr8_1:80480729-80480748 | Msa1217930:three_prime_UTR | 35.0% | |
| CCATTCCATTCACATGTATT+GGG | + | chr8_1:80480730-80480749 | Msa1217930:three_prime_UTR | 35.0% | |
| GAATTCCCAATACATGTGAA+TGG | - | chr8_1:80480738-80480757 | None:intergenic | 35.0% | |
| AAATCCAAGAACCAACAGCA+AGG | + | chr8_1:80477877-80477896 | Msa1217930:five_prime_UTR | 40.0% | |
| TACCTAATTCTCTCTCTTGC+AGG | - | chr8_1:80477951-80477970 | None:intergenic | 40.0% | |
| TAGGTAAAGAAAGATGAGCG+AGG | + | chr8_1:80477965-80477984 | Msa1217930:exon | 40.0% | |
| ATAATGACCTTCTTCGTTGC+GGG | - | chr8_1:80478104-80478123 | None:intergenic | 40.0% | |
| GATAATGACCTTCTTCGTTG+CGG | - | chr8_1:80478105-80478124 | None:intergenic | 40.0% | |
| AACAACGACAGCGATATCAA+CGG | - | chr8_1:80478165-80478184 | None:intergenic | 40.0% | |
| CCAACAATACAATGCCAAGT+AGG | - | chr8_1:80478363-80478382 | None:intergenic | 40.0% | |
| CCTACTTGGCATTGTATTGT+TGG | + | chr8_1:80478360-80478379 | Msa1217930:CDS | 40.0% | |
| CTCAAGAATTACTCATCTCC+AGG | - | chr8_1:80478792-80478811 | None:intergenic | 40.0% | |
| GGAGATGAGTAATTCTTGAG+TGG | + | chr8_1:80478792-80478811 | Msa1217930:intron | 40.0% | |
| ! | AATTCTTGAGTGGGGTACTT+AGG | + | chr8_1:80478802-80478821 | Msa1217930:intron | 40.0% |
| ! | ATTCTTGAGTGGGGTACTTA+GGG | + | chr8_1:80478803-80478822 | Msa1217930:intron | 40.0% |
| GAGTTTGATCGTAGTGGTAT+AGG | + | chr8_1:80478850-80478869 | Msa1217930:intron | 40.0% | |
| GTATTCTGTGTTCTTTGCAG+GGG | + | chr8_1:80478881-80478900 | Msa1217930:intron | 40.0% | |
| TATTCTGTGTTCTTTGCAGG+GGG | + | chr8_1:80478882-80478901 | Msa1217930:intron | 40.0% | |
| TGGGATAGAATAGGCTTGAT+AGG | + | chr8_1:80479048-80479067 | Msa1217930:intron | 40.0% | |
| GGGATAGAATAGGCTTGATA+GGG | + | chr8_1:80479049-80479068 | Msa1217930:intron | 40.0% | |
| CAAGATGTTGGATGTCGAAA+AGG | - | chr8_1:80479170-80479189 | None:intergenic | 40.0% | |
| ACACAATTTAGCATGGCGTT+TGG | - | chr8_1:80479230-80479249 | None:intergenic | 40.0% | |
| ! | TTTCAAGTCGAGTTAATCCG+TGG | + | chr8_1:80479270-80479289 | Msa1217930:intron | 40.0% |
| AGTCTAATACATCTGAGAGG+AGG | + | chr8_1:80479448-80479467 | Msa1217930:intron | 40.0% | |
| GTCTAATACATCTGAGAGGA+GGG | + | chr8_1:80479449-80479468 | Msa1217930:intron | 40.0% | |
| ! | AATTTGAGACTCAAGCAGTG+CGG | - | chr8_1:80479628-80479647 | None:intergenic | 40.0% |
| GACAGGAGTAGAAATCACAT+AGG | - | chr8_1:80479662-80479681 | None:intergenic | 40.0% | |
| GTTAAGATGTGCAGAATGAC+AGG | - | chr8_1:80479679-80479698 | None:intergenic | 40.0% | |
| CGTTCCAGTTTCAAAATACC+AGG | - | chr8_1:80479864-80479883 | None:intergenic | 40.0% | |
| GAAACTGGAACGGCTAATAA+CGG | + | chr8_1:80479872-80479891 | Msa1217930:intron | 40.0% | |
| ! | CTTCTAGAAAAGAAGGGTCA+AGG | + | chr8_1:80479928-80479947 | Msa1217930:intron | 40.0% |
| TGTCAGCCTTAGGGAATTTA+TGG | + | chr8_1:80480012-80480031 | Msa1217930:intron | 40.0% | |
| !! | TTTGATGGGTTTGATAGGGA+TGG | + | chr8_1:80480075-80480094 | Msa1217930:intron | 40.0% |
| ATCAAAGCTTGGACTAAGCT+CGG | + | chr8_1:80480128-80480147 | Msa1217930:intron | 40.0% | |
| !!! | GCAGTTTTGCTTTTCAAGTC+TGG | + | chr8_1:80480495-80480514 | Msa1217930:CDS | 40.0% |
| GTGAATGGAATGGAACACAA+AGG | - | chr8_1:80480723-80480742 | None:intergenic | 40.0% | |
| CCCAATACATGTGAATGGAA+TGG | - | chr8_1:80480733-80480752 | None:intergenic | 40.0% | |
| !! | TTCTCCTTGCTGTTGGTTCT+TGG | - | chr8_1:80477884-80477903 | None:intergenic | 45.0% |
| CACCTGCAAGAGAGAGAATT+AGG | + | chr8_1:80477946-80477965 | Msa1217930:five_prime_UTR | 45.0% | |
| GTAAAGAAAGATGAGCGAGG+AGG | + | chr8_1:80477968-80477987 | Msa1217930:exon | 45.0% | |
| ! | TGGTTTTCGATCTTCGGTGA+GGG | - | chr8_1:80478039-80478058 | None:intergenic | 45.0% |
| GAGAGTGGAGATGTAACAAG+TGG | - | chr8_1:80478059-80478078 | None:intergenic | 45.0% | |
| ! | TTGCATGTCAGGGAGCATAT+CGG | - | chr8_1:80478135-80478154 | None:intergenic | 45.0% |
| TATGCTCCCTGACATGCAAA+AGG | + | chr8_1:80478136-80478155 | Msa1217930:CDS | 45.0% | |
| AAGGAGTTTGACAAGAGGCA+TGG | + | chr8_1:80478336-80478355 | Msa1217930:CDS | 45.0% | |
| CCACTACGATCAAACTCAGT+TGG | - | chr8_1:80478847-80478866 | None:intergenic | 45.0% | |
| CCAACTGAGTTTGATCGTAG+TGG | + | chr8_1:80478844-80478863 | Msa1217930:intron | 45.0% | |
| CTATTCCGTGGAAGAGGAAA+AGG | - | chr8_1:80478917-80478936 | None:intergenic | 45.0% | |
| GTGTGTGCTTGGGATAGAAT+AGG | + | chr8_1:80479039-80479058 | Msa1217930:intron | 45.0% | |
| TTAGCATGGCGTTTGGACTA+TGG | - | chr8_1:80479223-80479242 | None:intergenic | 45.0% | |
| ! | ATTTGAGACTCAAGCAGTGC+GGG | - | chr8_1:80479627-80479646 | None:intergenic | 45.0% |
| !!! | AAGCTTAAGTCGCTTTTGCG+TGG | - | chr8_1:80479701-80479720 | None:intergenic | 45.0% |
| ! | CGGAGTTGTTTGCTGAACTT+AGG | + | chr8_1:80479747-80479766 | Msa1217930:intron | 45.0% |
| !!! | GCTCCCTGGTATTTTGAAAC+TGG | + | chr8_1:80479857-80479876 | Msa1217930:intron | 45.0% |
| ! | GTCCAAGCTTTGATTGTGCT+GGG | - | chr8_1:80480122-80480141 | None:intergenic | 45.0% |
| ! | AGTCCAAGCTTTGATTGTGC+TGG | - | chr8_1:80480123-80480142 | None:intergenic | 45.0% |
| TCAAAGCTTGGACTAAGCTC+GGG | + | chr8_1:80480129-80480148 | Msa1217930:intron | 45.0% | |
| !! | TCTGGCTAGCCTTATTCTGA+TGG | + | chr8_1:80480513-80480532 | Msa1217930:exon | 45.0% |
| GCAAACTGGGTTCTCAAGTT+TGG | + | chr8_1:80480663-80480682 | Msa1217930:three_prime_UTR | 45.0% | |
| !! | AAAAAAAAAATATAGTATAT+TGG | - | chr8_1:80479527-80479546 | None:intergenic | 5.0% |
| ACTGTGTGTGTGTGTGTGTG+TGG | - | chr8_1:80477926-80477945 | None:intergenic | 50.0% | |
| !! | AGGTGGAGGAGCATCTCTAA+TGG | + | chr8_1:80478007-80478026 | Msa1217930:CDS | 50.0% |
| ! | GTGGTTTTCGATCTTCGGTG+AGG | - | chr8_1:80478040-80478059 | None:intergenic | 50.0% |
| ! | CGGCTTCCTTTTGCATGTCA+GGG | - | chr8_1:80478145-80478164 | None:intergenic | 50.0% |
| ! | ACGGCTTCCTTTTGCATGTC+AGG | - | chr8_1:80478146-80478165 | None:intergenic | 50.0% |
| ! | ACAAGAGGCATGGTCCTACT+TGG | + | chr8_1:80478346-80478365 | Msa1217930:CDS | 50.0% |
| ! | GGGGTACTTAGGGATGACAA+TGG | + | chr8_1:80478813-80478832 | Msa1217930:intron | 50.0% |
| ! | GTGTTCTTTGCAGGGGGTTT+TGG | + | chr8_1:80478888-80478907 | Msa1217930:intron | 50.0% |
| ! | GGTGTCCTTTTCCTCTTCCA+CGG | + | chr8_1:80478909-80478928 | Msa1217930:intron | 50.0% |
| TCACTGAGGGGAAACCAAAC+AGG | - | chr8_1:80478978-80478997 | None:intergenic | 50.0% | |
| TCGGATTGAGTGTGTGTGCT+TGG | + | chr8_1:80479028-80479047 | Msa1217930:intron | 50.0% | |
| CGGATTGAGTGTGTGTGCTT+GGG | + | chr8_1:80479029-80479048 | Msa1217930:intron | 50.0% | |
| GTTCTGCTCAGCAATATCGC+AGG | - | chr8_1:80479401-80479420 | None:intergenic | 50.0% | |
| TGTGTGTGTCAAGAGTCCTC+TGG | + | chr8_1:80479835-80479854 | Msa1217930:intron | 50.0% | |
| TCAAAATACCAGGGAGCCAG+AGG | - | chr8_1:80479854-80479873 | None:intergenic | 50.0% | |
| TAGGGATGGAGAGACTGCAA+AGG | + | chr8_1:80480089-80480108 | Msa1217930:intron | 50.0% | |
| AGCCCAGCACAATCAAAGCT+TGG | + | chr8_1:80480117-80480136 | Msa1217930:intron | 50.0% | |
| AGCTCGGGTTTCAGATACCA+TGG | + | chr8_1:80480144-80480163 | Msa1217930:intron | 50.0% | |
| !! | TGGCTTCTGGAACATCACCA+TGG | - | chr8_1:80480164-80480183 | None:intergenic | 50.0% |
| !! | GGCTAGCCTTATTCTGATGG+AGG | + | chr8_1:80480516-80480535 | Msa1217930:exon | 50.0% |
| ! | TTCTTCGTTGCGGGTGTTGC+AGG | - | chr8_1:80478095-80478114 | None:intergenic | 55.0% |
| TGCAACACCCGCAACGAAGA+AGG | + | chr8_1:80478094-80478113 | Msa1217930:CDS | 55.0% | |
| AGGCAGCTATTCCGTGGAAG+AGG | - | chr8_1:80478923-80478942 | None:intergenic | 55.0% | |
| TGACACAGGCAGCTATTCCG+TGG | - | chr8_1:80478929-80478948 | None:intergenic | 55.0% | |
| ! | GGTCAAGGGAGTGTGATCTC+TGG | + | chr8_1:80479943-80479962 | Msa1217930:intron | 55.0% |
| ! | AAGAAGCACAGCGCAGGTGG+AGG | + | chr8_1:80477993-80478012 | Msa1217930:CDS | 60.0% |
| GGAGAAGCGGATGCAGAGAG+TGG | - | chr8_1:80478074-80478093 | None:intergenic | 60.0% | |
| ! | TGCGGGTGTTGCAGGAGAAG+CGG | - | chr8_1:80478087-80478106 | None:intergenic | 60.0% |
| ! | TCAAGAGTCCTCTGGCTCCC+TGG | + | chr8_1:80479843-80479862 | Msa1217930:intron | 60.0% |
| ! | GAGGCGAAGAAGCACAGCGC+AGG | + | chr8_1:80477987-80478006 | Msa1217930:CDS | 65.0% |
| ! | GCGAAGAAGCACAGCGCAGG+TGG | + | chr8_1:80477990-80478009 | Msa1217930:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 80477828 | 80480813 | 80477828 | ID=Msa1217930;Name=Msa1217930 |
| chr8_1 | mRNA | 80477828 | 80480813 | 80477828 | ID=Msa1217930-mRNA-1;Parent=Msa1217930;Name=Msa1217930-mRNA-1;_AED=0.07;_eAED=0.07;_QI=150|1|1|1|1|1|3|292|130 |
| chr8_1 | exon | 80477828 | 80478181 | 80477828 | ID=Msa1217930-mRNA-1:exon:28157;Parent=Msa1217930-mRNA-1 |
| chr8_1 | exon | 80478288 | 80478393 | 80478288 | ID=Msa1217930-mRNA-1:exon:28158;Parent=Msa1217930-mRNA-1 |
| chr8_1 | exon | 80480439 | 80480813 | 80480439 | ID=Msa1217930-mRNA-1:exon:28159;Parent=Msa1217930-mRNA-1 |
| chr8_1 | five_prime_UTR | 80477828 | 80477977 | 80477828 | ID=Msa1217930-mRNA-1:five_prime_utr;Parent=Msa1217930-mRNA-1 |
| chr8_1 | CDS | 80477978 | 80478181 | 80477978 | ID=Msa1217930-mRNA-1:cds;Parent=Msa1217930-mRNA-1 |
| chr8_1 | CDS | 80478288 | 80478393 | 80478288 | ID=Msa1217930-mRNA-1:cds;Parent=Msa1217930-mRNA-1 |
| chr8_1 | CDS | 80480439 | 80480521 | 80480439 | ID=Msa1217930-mRNA-1:cds;Parent=Msa1217930-mRNA-1 |
| chr8_1 | three_prime_UTR | 80480522 | 80480813 | 80480522 | ID=Msa1217930-mRNA-1:three_prime_utr;Parent=Msa1217930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
