Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217770 | XP_003609697.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.58e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217770 | sp|Q78P75|DYL2_RAT | 68.605 | 86 | 27 | 0 | 45 | 130 | 4 | 89 | 2.04e-42 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217770 | G7JLJ9 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 7.53e-91 | 268 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743120 | Msa1217770 | 0.809916 | 1.493222e-50 | -8.615850e-47 |
| Msa0158130 | Msa1217770 | 0.804813 | 1.803879e-49 | -8.615850e-47 |
| Msa0175050 | Msa1217770 | -0.812553 | 4.000328e-51 | -8.615850e-47 |
| Msa0183010 | Msa1217770 | 0.809818 | 1.567698e-50 | -8.615850e-47 |
| Msa0481120 | Msa1217770 | 0.872586 | 2.838745e-67 | -8.615850e-47 |
| Msa1217770 | Msa1217930 | 0.880186 | 6.755561e-70 | -8.615850e-47 |
| Msa1217770 | Msa1420270 | -0.808221 | 3.444659e-50 | -8.615850e-47 |
| Msa0521620 | Msa1217770 | -0.801057 | 1.077249e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217770 | MtrunA17_Chr4g0067531 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.45e-94 | 268 |
| Msa1217770 | MtrunA17_Chr8g0360861 | 48.837 | 86 | 42 | 1 | 46 | 129 | 5 | 90 | 2.47e-26 | 95.1 |
| Msa1217770 | MtrunA17_Chr4g0059791 | 52.439 | 82 | 36 | 2 | 51 | 129 | 220 | 301 | 4.34e-21 | 86.3 |
| Msa1217770 | MtrunA17_Chr8g0391451 | 43.478 | 92 | 38 | 2 | 47 | 129 | 54 | 140 | 1.60e-18 | 76.3 |
| Msa1217770 | MtrunA17_Chr4g0063491 | 46.591 | 88 | 39 | 3 | 46 | 129 | 155 | 238 | 6.89e-18 | 76.6 |
| Msa1217770 | MtrunA17_Chr2g0331651 | 40.698 | 86 | 49 | 1 | 46 | 129 | 5 | 90 | 8.98e-17 | 70.1 |
| Msa1217770 | MtrunA17_Chr6g0485891 | 37.647 | 85 | 51 | 1 | 46 | 128 | 39 | 123 | 4.51e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217770 | AT4G15930.1 | 66.923 | 130 | 36 | 3 | 1 | 130 | 1 | 123 | 9.00e-58 | 175 |
| Msa1217770 | AT4G15930.2 | 58.654 | 104 | 36 | 3 | 1 | 104 | 1 | 97 | 1.00e-35 | 119 |
| Msa1217770 | AT5G20110.1 | 41.463 | 123 | 61 | 3 | 11 | 129 | 86 | 201 | 8.11e-20 | 81.3 |
| Msa1217770 | AT1G23220.1 | 43.023 | 86 | 46 | 1 | 47 | 129 | 36 | 121 | 2.56e-18 | 75.5 |
| Msa1217770 | AT1G52245.1 | 40.698 | 86 | 49 | 1 | 46 | 129 | 5 | 90 | 1.02e-17 | 72.8 |
| Msa1217770 | AT4G27360.1 | 38.824 | 85 | 50 | 1 | 46 | 128 | 5 | 89 | 9.50e-17 | 70.9 |
| Msa1217770 | AT3G16120.2 | 39.759 | 83 | 48 | 1 | 49 | 129 | 8 | 90 | 2.27e-16 | 69.3 |
| Msa1217770 | AT3G16120.1 | 39.759 | 83 | 48 | 1 | 49 | 129 | 8 | 90 | 2.27e-16 | 69.3 |
Find 44 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTTTGTTTATTTCTATT+TGG | 0.134093 | 8_1:-80259986 | Msa1217770:CDS |
| ATTCTCTTGCTGTTGGTTCT+TGG | 0.201234 | 8_1:+80262573 | None:intergenic |
| TACCTAATTCTCTCTCTTGC+AGG | 0.259833 | 8_1:+80262505 | None:intergenic |
| GCAAACTGGGTTCTCAAGTT+TGG | 0.292328 | 8_1:-80259787 | Msa1217770:three_prime_UTR |
| TTCTTCGTTGCGGGTGTTGC+AGG | 0.303894 | 8_1:+80262361 | None:intergenic |
| CCATTCCATTCACATGTATT+GGG | 0.311028 | 8_1:-80259720 | Msa1217770:three_prime_UTR |
| ATAATGACCTTCTTCGTTGC+GGG | 0.323218 | 8_1:+80262352 | None:intergenic |
| TCCATTCCATTCACATGTAT+TGG | 0.327294 | 8_1:-80259721 | Msa1217770:three_prime_UTR |
| TGTATTGTTGGTCGCAATTT+CGG | 0.332097 | 8_1:-80262082 | Msa1217770:intron |
| AGATAATAATTTATGTTGAA+TGG | 0.341950 | 8_1:+80259665 | None:intergenic |
| CACCTGCAAGAGAGAGAATT+AGG | 0.341950 | 8_1:-80262507 | Msa1217770:five_prime_UTR |
| ATATCTAATTTCATGCAAAC+TGG | 0.351170 | 8_1:-80259801 | Msa1217770:three_prime_UTR |
| CCTACTTGGCATTGTATTGT+TGG | 0.395219 | 8_1:-80262094 | Msa1217770:CDS |
| AGGTGGAGGAGCAGCTCTAA+TGG | 0.440034 | 8_1:-80262446 | Msa1217770:CDS |
| ACAAGAGGCATGGTCCTACT+TGG | 0.447517 | 8_1:-80262108 | Msa1217770:CDS |
| GAATTAGATTCTCTTGCTGT+TGG | 0.461778 | 8_1:+80262566 | None:intergenic |
| AAGAAGCACAGCGCAGGTGG+AGG | 0.466246 | 8_1:-80262460 | Msa1217770:CDS |
| GCGAAGAAGCACAGCGCAGG+TGG | 0.479599 | 8_1:-80262463 | Msa1217770:CDS |
| GAATTCCCAATACATGTGAA+TGG | 0.495884 | 8_1:+80259715 | None:intergenic |
| GAGGCGAAGAAGCACAGCGC+AGG | 0.496399 | 8_1:-80262466 | Msa1217770:CDS |
| TTGTAAAGAGTTTGTGCTAG+TGG | 0.509356 | 8_1:+80259841 | None:intergenic |
| TGCAACACCCGCAACGAAGA+AGG | 0.520232 | 8_1:-80262359 | Msa1217770:CDS |
| TTGCATGTCAGGGAGCATAT+CGG | 0.526660 | 8_1:+80262321 | None:intergenic |
| TGTTGCAGAGACTATAAAGA+AGG | 0.528953 | 8_1:-80262137 | Msa1217770:CDS |
| CCCAATACATGTGAATGGAA+TGG | 0.535113 | 8_1:+80259720 | None:intergenic |
| TGAATGGAATGGAACACAAA+GGG | 0.537376 | 8_1:+80259731 | None:intergenic |
| GTTTGTTTCATGAGTCACAT+AGG | 0.542936 | 8_1:+80260008 | None:intergenic |
| TGCGGGTGTTGCAGGAGAAG+CGG | 0.546280 | 8_1:+80262369 | None:intergenic |
| TCTGGCTAGCCTTATTCTGA+TGG | 0.546660 | 8_1:-80259937 | Msa1217770:exon |
| TATGCTCCCTGACATGCAAA+AGG | 0.547026 | 8_1:-80262317 | Msa1217770:CDS |
| TATCTAATTTCATGCAAACT+GGG | 0.565835 | 8_1:-80259800 | Msa1217770:three_prime_UTR |
| GATAATGACCTTCTTCGTTG+CGG | 0.566862 | 8_1:+80262351 | None:intergenic |
| GGAGAAGCGGATGCAGAGAG+TGG | 0.576599 | 8_1:+80262382 | None:intergenic |
| CCAAATAGAAATAAACAAAG+TGG | 0.592216 | 8_1:+80259986 | None:intergenic |
| CCAACAATACAATGCCAAGT+AGG | 0.596782 | 8_1:+80262094 | None:intergenic |
| AATTGAATTAGGCATTTGAG+AGG | 0.599018 | 8_1:-80262177 | Msa1217770:intron |
| GGCTAGCCTTATTCTGATGG+AGG | 0.621751 | 8_1:-80259934 | Msa1217770:exon |
| TAGGTAAAGAAAGATGAGCG+AGG | 0.624160 | 8_1:-80262488 | Msa1217770:exon |
| AAGGAGTTTGACAAGAGGCA+TGG | 0.631606 | 8_1:-80262118 | Msa1217770:CDS |
| GTGAATGGAATGGAACACAA+AGG | 0.653029 | 8_1:+80259730 | None:intergenic |
| GAGAGTGGAGATGTAACAAG+TGG | 0.663410 | 8_1:+80262397 | None:intergenic |
| AACAACGACAGCGATATCAA+CGG | 0.685652 | 8_1:+80262291 | None:intergenic |
| TAAAGAAGGAGTTTGACAAG+AGG | 0.686443 | 8_1:-80262123 | Msa1217770:CDS |
| GTAAAGAAAGATGAGCGAGG+AGG | 0.700815 | 8_1:-80262485 | Msa1217770:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAAATTAAATTCTA+AGG | - | chr8_1:80260450-80260469 | Msa1217770:intron | 10.0% |
| !!! | CTAATAACAATTTTAAAAAA+TGG | + | chr8_1:80260512-80260531 | None:intergenic | 10.0% |
| !! | AAATTAGAAAAAATTGAAGA+AGG | + | chr8_1:80260054-80260073 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGAAATTGAATT+AGG | - | chr8_1:80260097-80260116 | Msa1217770:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGTGATG+TGG | - | chr8_1:80261371-80261390 | Msa1217770:intron | 15.0% |
| !! | TATAAGTTTGATATTATGAA+CGG | - | chr8_1:80261562-80261581 | Msa1217770:intron | 15.0% |
| !! | TGAAAGATATAAATATTTGA+TGG | - | chr8_1:80261895-80261914 | Msa1217770:intron | 15.0% |
| !! | GAAAGATATAAATATTTGAT+GGG | - | chr8_1:80261896-80261915 | Msa1217770:intron | 15.0% |
| !! | AAATTTGCATTAAAACTTTA+TGG | + | chr8_1:80262019-80262038 | None:intergenic | 15.0% |
| !! | CCATATAGAATTATATTATT+AGG | + | chr8_1:80262181-80262200 | None:intergenic | 15.0% |
| !! | CCTAATAATATAATTCTATA+TGG | - | chr8_1:80262178-80262197 | Msa1217770:intron | 15.0% |
| !! | AGATAATAATTTATGTTGAA+TGG | + | chr8_1:80262623-80262642 | None:intergenic | 15.0% |
| !! | TAGATTATAGATCTAATCAA+GGG | + | chr8_1:80260241-80260260 | None:intergenic | 20.0% |
| !! | ATAGATTATAGATCTAATCA+AGG | + | chr8_1:80260242-80260261 | None:intergenic | 20.0% |
| !! | GTAGTAAATAGAAAAAATCT+AGG | + | chr8_1:80260370-80260389 | None:intergenic | 20.0% |
| !!! | GTGTTTTATAGATTGAATTT+TGG | - | chr8_1:80260570-80260589 | Msa1217770:intron | 20.0% |
| !!! | AGTATTTAGTTTGTTAACTT+TGG | - | chr8_1:80260835-80260854 | Msa1217770:intron | 20.0% |
| !! | ATTCTCATAAAGATAGAATT+GGG | + | chr8_1:80261030-80261049 | None:intergenic | 20.0% |
| !! | TATTCTCATAAAGATAGAAT+TGG | + | chr8_1:80261031-80261050 | None:intergenic | 20.0% |
| !! | TGACTTATTCATAATACAAT+CGG | + | chr8_1:80261611-80261630 | None:intergenic | 20.0% |
| !!! | TATATTACTTCTAGAAAAGA+AGG | - | chr8_1:80261756-80261775 | Msa1217770:intron | 20.0% |
| !!! | ATATTACTTCTAGAAAAGAA+GGG | - | chr8_1:80261757-80261776 | Msa1217770:intron | 20.0% |
| !! | ATCAAAAGAAAACATATGTT+TGG | + | chr8_1:80261828-80261847 | None:intergenic | 20.0% |
| !! | AAAGTGATCTTATACATAAA+TGG | + | chr8_1:80262085-80262104 | None:intergenic | 20.0% |
| ! | AGATTATAGATCTAATCAAG+GGG | + | chr8_1:80260240-80260259 | None:intergenic | 25.0% |
| ! | CATAACTATGAGTTAGAAAT+TGG | + | chr8_1:80260337-80260356 | None:intergenic | 25.0% |
| !! | TTACTACTGTTTTCTTATTG+TGG | - | chr8_1:80260383-80260402 | Msa1217770:intron | 25.0% |
| ! | CAATCTATAAAACACATACA+CGG | + | chr8_1:80260565-80260584 | None:intergenic | 25.0% |
| !!! | AAATACTGTTTTTTCACTGA+GGG | + | chr8_1:80260822-80260841 | None:intergenic | 25.0% |
| !!! | TAAATACTGTTTTTTCACTG+AGG | + | chr8_1:80260823-80260842 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTTAACTTTGGAT+CGG | - | chr8_1:80260840-80260859 | Msa1217770:intron | 25.0% |
| ! | AACATTTACACAATTTAGCA+TGG | + | chr8_1:80261069-80261088 | None:intergenic | 25.0% |
| !! | TTATGTTTTCTTCTCTCATA+TGG | - | chr8_1:80261147-80261166 | Msa1217770:intron | 25.0% |
| !!! | TTTTTTTTGTGATGTGGAAA+AGG | - | chr8_1:80261377-80261396 | Msa1217770:intron | 25.0% |
| !!! | AAATATTTGATGGGTTTGAT+AGG | - | chr8_1:80261905-80261924 | Msa1217770:intron | 25.0% |
| !!! | AATATTTGATGGGTTTGATA+GGG | - | chr8_1:80261906-80261925 | Msa1217770:intron | 25.0% |
| ! | ATTATATTATTAGGCTTAGC+AGG | + | chr8_1:80262172-80262191 | None:intergenic | 25.0% |
| ! | ACACAATTCAATCATTAACT+AGG | + | chr8_1:80262228-80262247 | None:intergenic | 25.0% |
| ! | TAATGATTGAATTGTGTTCA+TGG | - | chr8_1:80262231-80262250 | Msa1217770:intron | 25.0% |
| ! | CCAAATAGAAATAAACAAAG+TGG | + | chr8_1:80262302-80262321 | None:intergenic | 25.0% |
| !!! | CCACTTTGTTTATTTCTATT+TGG | - | chr8_1:80262299-80262318 | Msa1217770:CDS | 25.0% |
| ! | ATATCTAATTTCATGCAAAC+TGG | - | chr8_1:80262484-80262503 | Msa1217770:exon | 25.0% |
| ! | TATCTAATTTCATGCAAACT+GGG | - | chr8_1:80262485-80262504 | Msa1217770:exon | 25.0% |
| !!! | TTGGTTCTTGGATTTTAACT+CGG | + | chr8_1:80259703-80259722 | None:intergenic | 30.0% |
| AATTGAATTAGGCATTTGAG+AGG | - | chr8_1:80260108-80260127 | Msa1217770:intron | 30.0% | |
| TGTGTAGTTAACAAAATGGA+AGG | - | chr8_1:80260406-80260425 | Msa1217770:intron | 30.0% | |
| AAAGAACACAGAATACAAAG+TGG | + | chr8_1:80260708-80260727 | None:intergenic | 30.0% | |
| AAACAGGTATGTCGTTAAAT+TGG | + | chr8_1:80260793-80260812 | None:intergenic | 30.0% | |
| AATTTAACGACATACCTGTT+TGG | - | chr8_1:80260792-80260811 | Msa1217770:intron | 30.0% | |
| !!! | AATACTGTTTTTTCACTGAG+GGG | + | chr8_1:80260821-80260840 | None:intergenic | 30.0% |
| AACACTATTAAGAGTTCTTC+AGG | + | chr8_1:80260911-80260930 | None:intergenic | 30.0% | |
| ! | CTGTGAACAGAAAAATGTTT+TGG | + | chr8_1:80260965-80260984 | None:intergenic | 30.0% |
| AAGATGTTGGATGTTGAAAA+GGG | + | chr8_1:80261001-80261020 | None:intergenic | 30.0% | |
| ! | CAGTAAATAACAAAGTGTCA+CGG | + | chr8_1:80261122-80261141 | None:intergenic | 30.0% |
| ATCTTTCATTCTACACTTCA+TGG | + | chr8_1:80261883-80261902 | None:intergenic | 30.0% | |
| CATTAAAACTTTATGGCTTC+TGG | + | chr8_1:80262012-80262031 | None:intergenic | 30.0% | |
| AAATGGCATGATATTTGTGA+TGG | + | chr8_1:80262068-80262087 | None:intergenic | 30.0% | |
| ! | GGAAATTTCTTTCTTTTTGC+AGG | - | chr8_1:80262252-80262271 | Msa1217770:intron | 30.0% |
| ! | GAATTAGATTCTCTTGCTGT+TGG | + | chr8_1:80259722-80259741 | None:intergenic | 35.0% |
| ! | AACAAGTGGTTTTCGATCTT+CGG | + | chr8_1:80259877-80259896 | None:intergenic | 35.0% |
| TGTTGCAGAGACTATAAAGA+AGG | - | chr8_1:80260148-80260167 | Msa1217770:intron | 35.0% | |
| TAAAGAAGGAGTTTGACAAG+AGG | - | chr8_1:80260162-80260181 | Msa1217770:intron | 35.0% | |
| TGTATTGTTGGTCGCAATTT+CGG | - | chr8_1:80260203-80260222 | Msa1217770:intron | 35.0% | |
| GTGGTGTGTAGTTAACAAAA+TGG | - | chr8_1:80260402-80260421 | Msa1217770:intron | 35.0% | |
| !! | ATTAAATTCTAAGGCGTGTC+TGG | - | chr8_1:80260459-80260478 | Msa1217770:intron | 35.0% |
| !!! | CTTTTCGAGTTATTTCTACC+TGG | - | chr8_1:80260602-80260621 | Msa1217770:intron | 35.0% |
| GAGATGAGTAATTCTTGAGT+GGG | - | chr8_1:80260624-80260643 | Msa1217770:intron | 35.0% | |
| AGATGAGTAATTCTTGAGTG+GGG | - | chr8_1:80260625-80260644 | Msa1217770:intron | 35.0% | |
| TTGTATTCTGTGTTCTTTGC+AGG | - | chr8_1:80260710-80260729 | Msa1217770:intron | 35.0% | |
| TGTATTCTGTGTTCTTTGCA+GGG | - | chr8_1:80260711-80260730 | Msa1217770:intron | 35.0% | |
| TTGGAATGATAAACTGACAC+AGG | + | chr8_1:80260774-80260793 | None:intergenic | 35.0% | |
| CAAGATGTTGGATGTTGAAA+AGG | + | chr8_1:80261002-80261021 | None:intergenic | 35.0% | |
| AATTGGGAACAACAAGATGT+TGG | + | chr8_1:80261014-80261033 | None:intergenic | 35.0% | |
| TGAAGTCTAATACATCTGAG+AGG | - | chr8_1:80261277-80261296 | Msa1217770:intron | 35.0% | |
| GACACACACAAAATGTATTG+AGG | + | chr8_1:80261660-80261679 | None:intergenic | 35.0% | |
| GTTCCAGTTTCAAAATACCA+GGG | + | chr8_1:80261698-80261717 | None:intergenic | 35.0% | |
| !!! | CTGGTATTTTGAAACTGGAA+CGG | - | chr8_1:80261697-80261716 | Msa1217770:intron | 35.0% |
| ! | TTCTAGAAAAGAAGGGTCAA+GGG | - | chr8_1:80261764-80261783 | Msa1217770:intron | 35.0% |
| ! | TTTCTTTTGATGTCAGCCTT+AGG | - | chr8_1:80261837-80261856 | Msa1217770:intron | 35.0% |
| ! | TTCTTTTGATGTCAGCCTTA+GGG | - | chr8_1:80261838-80261857 | Msa1217770:intron | 35.0% |
| CAATTGCCATAAATTCCCTA+AGG | + | chr8_1:80261856-80261875 | None:intergenic | 35.0% | |
| GCATGATATTTGTGATGGTT+TGG | + | chr8_1:80262063-80262082 | None:intergenic | 35.0% | |
| TCAGACTGCTATATCAAATG+AGG | - | chr8_1:80262131-80262150 | Msa1217770:CDS | 35.0% | |
| CAAATGAGGATATGATTGTC+TGG | - | chr8_1:80262145-80262164 | Msa1217770:CDS | 35.0% | |
| GTTTGTTTCATGAGTCACAT+AGG | + | chr8_1:80262280-80262299 | None:intergenic | 35.0% | |
| ! | TTTTTGCCTCCATCAGAATA+AGG | + | chr8_1:80262360-80262379 | None:intergenic | 35.0% |
| TTGTAAAGAGTTTGTGCTAG+TGG | + | chr8_1:80262447-80262466 | None:intergenic | 35.0% | |
| TGAATGGAATGGAACACAAA+GGG | + | chr8_1:80262557-80262576 | None:intergenic | 35.0% | |
| TCCATTCCATTCACATGTAT+TGG | - | chr8_1:80262564-80262583 | Msa1217770:five_prime_UTR | 35.0% | |
| CCATTCCATTCACATGTATT+GGG | - | chr8_1:80262565-80262584 | Msa1217770:five_prime_UTR | 35.0% | |
| GAATTCCCAATACATGTGAA+TGG | + | chr8_1:80262573-80262592 | None:intergenic | 35.0% | |
| !!! | GGATTTTAACTCGGAGAGAA+TGG | + | chr8_1:80259694-80259713 | None:intergenic | 40.0% |
| !! | ATTCTCTTGCTGTTGGTTCT+TGG | + | chr8_1:80259715-80259734 | None:intergenic | 40.0% |
| TACCTAATTCTCTCTCTTGC+AGG | + | chr8_1:80259783-80259802 | None:intergenic | 40.0% | |
| TAGGTAAAGAAAGATGAGCG+AGG | - | chr8_1:80259797-80259816 | Msa1217770:three_prime_UTR | 40.0% | |
| ATAATGACCTTCTTCGTTGC+GGG | + | chr8_1:80259936-80259955 | None:intergenic | 40.0% | |
| GATAATGACCTTCTTCGTTG+CGG | + | chr8_1:80259937-80259956 | None:intergenic | 40.0% | |
| AACAACGACAGCGATATCAA+CGG | + | chr8_1:80259997-80260016 | None:intergenic | 40.0% | |
| CCAACAATACAATGCCAAGT+AGG | + | chr8_1:80260194-80260213 | None:intergenic | 40.0% | |
| CCTACTTGGCATTGTATTGT+TGG | - | chr8_1:80260191-80260210 | Msa1217770:intron | 40.0% | |
| CTCAAGAATTACTCATCTCC+AGG | + | chr8_1:80260623-80260642 | None:intergenic | 40.0% | |
| GGAGATGAGTAATTCTTGAG+TGG | - | chr8_1:80260623-80260642 | Msa1217770:intron | 40.0% | |
| ! | AATTCTTGAGTGGGGTACTT+AGG | - | chr8_1:80260633-80260652 | Msa1217770:intron | 40.0% |
| ! | ATTCTTGAGTGGGGTACTTA+GGG | - | chr8_1:80260634-80260653 | Msa1217770:intron | 40.0% |
| GAGTTTGATCGTAGTGGTAT+AGG | - | chr8_1:80260681-80260700 | Msa1217770:intron | 40.0% | |
| GTATTCTGTGTTCTTTGCAG+GGG | - | chr8_1:80260712-80260731 | Msa1217770:intron | 40.0% | |
| TATTCTGTGTTCTTTGCAGG+GGG | - | chr8_1:80260713-80260732 | Msa1217770:intron | 40.0% | |
| TGGGATAGAATAGGCTTGAT+AGG | - | chr8_1:80260879-80260898 | Msa1217770:intron | 40.0% | |
| GGGATAGAATAGGCTTGATA+GGG | - | chr8_1:80260880-80260899 | Msa1217770:intron | 40.0% | |
| ACACAATTTAGCATGGCGTT+TGG | + | chr8_1:80261062-80261081 | None:intergenic | 40.0% | |
| AGTCTAATACATCTGAGAGG+AGG | - | chr8_1:80261280-80261299 | Msa1217770:intron | 40.0% | |
| GTCTAATACATCTGAGAGGA+GGG | - | chr8_1:80261281-80261300 | Msa1217770:intron | 40.0% | |
| ! | AATTTGAGACTCAAGCAGTG+CGG | + | chr8_1:80261463-80261482 | None:intergenic | 40.0% |
| GACAGGAGTAGAAATCACAT+AGG | + | chr8_1:80261497-80261516 | None:intergenic | 40.0% | |
| GTTAAGATGTGCAGAATGAC+AGG | + | chr8_1:80261514-80261533 | None:intergenic | 40.0% | |
| !!! | AAGCTTAAGTCGCTTTTGCA+TGG | + | chr8_1:80261536-80261555 | None:intergenic | 40.0% |
| CGTTCCAGTTTCAAAATACC+AGG | + | chr8_1:80261699-80261718 | None:intergenic | 40.0% | |
| GAAACTGGAACGGCTAATAA+CGG | - | chr8_1:80261707-80261726 | Msa1217770:intron | 40.0% | |
| ! | CTTCTAGAAAAGAAGGGTCA+AGG | - | chr8_1:80261763-80261782 | Msa1217770:intron | 40.0% |
| TGTCAGCCTTAGGGAATTTA+TGG | - | chr8_1:80261847-80261866 | Msa1217770:intron | 40.0% | |
| !! | TTTGATGGGTTTGATAGGGA+TGG | - | chr8_1:80261910-80261929 | Msa1217770:intron | 40.0% |
| ATCAAAGCTTGGACTAAGCT+CGG | - | chr8_1:80261963-80261982 | Msa1217770:intron | 40.0% | |
| !!! | GCAGTTTTGCTTTTCAAGTC+TGG | - | chr8_1:80262330-80262349 | Msa1217770:CDS | 40.0% |
| GTGAATGGAATGGAACACAA+AGG | + | chr8_1:80262558-80262577 | None:intergenic | 40.0% | |
| CCCAATACATGTGAATGGAA+TGG | + | chr8_1:80262568-80262587 | None:intergenic | 40.0% | |
| CACCTGCAAGAGAGAGAATT+AGG | - | chr8_1:80259778-80259797 | Msa1217770:three_prime_UTR | 45.0% | |
| GTAAAGAAAGATGAGCGAGG+AGG | - | chr8_1:80259800-80259819 | Msa1217770:three_prime_UTR | 45.0% | |
| ! | TGGTTTTCGATCTTCGGTGA+GGG | + | chr8_1:80259871-80259890 | None:intergenic | 45.0% |
| GAGAGTGGAGATGTAACAAG+TGG | + | chr8_1:80259891-80259910 | None:intergenic | 45.0% | |
| ! | TTGCATGTCAGGGAGCATAT+CGG | + | chr8_1:80259967-80259986 | None:intergenic | 45.0% |
| TATGCTCCCTGACATGCAAA+AGG | - | chr8_1:80259968-80259987 | Msa1217770:CDS | 45.0% | |
| AAGGAGTTTGACAAGAGGCA+TGG | - | chr8_1:80260167-80260186 | Msa1217770:intron | 45.0% | |
| CCACTACGATCAAACTCAGT+TGG | + | chr8_1:80260678-80260697 | None:intergenic | 45.0% | |
| CCAACTGAGTTTGATCGTAG+TGG | - | chr8_1:80260675-80260694 | Msa1217770:intron | 45.0% | |
| CTATTCCGTGGAAGAGGAAA+AGG | + | chr8_1:80260748-80260767 | None:intergenic | 45.0% | |
| GTGTGTGCTTGGGATAGAAT+AGG | - | chr8_1:80260870-80260889 | Msa1217770:intron | 45.0% | |
| TTAGCATGGCGTTTGGACTA+TGG | + | chr8_1:80261055-80261074 | None:intergenic | 45.0% | |
| ! | ATTTGAGACTCAAGCAGTGC+GGG | + | chr8_1:80261462-80261481 | None:intergenic | 45.0% |
| ! | CGGAGTTGTTTGCTGAACTT+AGG | - | chr8_1:80261582-80261601 | Msa1217770:intron | 45.0% |
| !!! | GCTCCCTGGTATTTTGAAAC+TGG | - | chr8_1:80261692-80261711 | Msa1217770:intron | 45.0% |
| ! | GTCCAAGCTTTGATTGTGCT+GGG | + | chr8_1:80261957-80261976 | None:intergenic | 45.0% |
| ! | AGTCCAAGCTTTGATTGTGC+TGG | + | chr8_1:80261958-80261977 | None:intergenic | 45.0% |
| TCAAAGCTTGGACTAAGCTC+GGG | - | chr8_1:80261964-80261983 | Msa1217770:intron | 45.0% | |
| !! | TCTGGCTAGCCTTATTCTGA+TGG | - | chr8_1:80262348-80262367 | Msa1217770:CDS | 45.0% |
| GCAAACTGGGTTCTCAAGTT+TGG | - | chr8_1:80262498-80262517 | Msa1217770:five_prime_UTR | 45.0% | |
| !! | AAAAAAAAAAAATAGAATAT+TGG | + | chr8_1:80261359-80261378 | None:intergenic | 5.0% |
| TCTGTGTGTGTGTGTGTGTG+TGG | + | chr8_1:80259756-80259775 | None:intergenic | 50.0% | |
| ! | GTGGTTTTCGATCTTCGGTG+AGG | + | chr8_1:80259872-80259891 | None:intergenic | 50.0% |
| ! | CGGCTTCCTTTTGCATGTCA+GGG | + | chr8_1:80259977-80259996 | None:intergenic | 50.0% |
| ! | ACGGCTTCCTTTTGCATGTC+AGG | + | chr8_1:80259978-80259997 | None:intergenic | 50.0% |
| ! | ACAAGAGGCATGGTCCTACT+TGG | - | chr8_1:80260177-80260196 | Msa1217770:intron | 50.0% |
| ! | GGGGTACTTAGGGATGACAA+TGG | - | chr8_1:80260644-80260663 | Msa1217770:intron | 50.0% |
| ! | GTGTTCTTTGCAGGGGGTTT+TGG | - | chr8_1:80260719-80260738 | Msa1217770:intron | 50.0% |
| ! | GGTGTCCTTTTCCTCTTCCA+CGG | - | chr8_1:80260740-80260759 | Msa1217770:intron | 50.0% |
| TCACTGAGGGGAAACCAAAC+AGG | + | chr8_1:80260809-80260828 | None:intergenic | 50.0% | |
| TCGGATTGAGTGTGTGTGCT+TGG | - | chr8_1:80260859-80260878 | Msa1217770:intron | 50.0% | |
| CGGATTGAGTGTGTGTGCTT+GGG | - | chr8_1:80260860-80260879 | Msa1217770:intron | 50.0% | |
| GTTCTGCTCAGCAATATCGC+AGG | + | chr8_1:80261233-80261252 | None:intergenic | 50.0% | |
| TGTGTGTGTCAAGAGTCCTC+TGG | - | chr8_1:80261670-80261689 | Msa1217770:intron | 50.0% | |
| TCAAAATACCAGGGAGCCAG+AGG | + | chr8_1:80261689-80261708 | None:intergenic | 50.0% | |
| ! | AGGGAGTGTGATCTCTGGTA+TGG | - | chr8_1:80261783-80261802 | Msa1217770:intron | 50.0% |
| TAGGGATGGAGAGACTGCAA+AGG | - | chr8_1:80261924-80261943 | Msa1217770:intron | 50.0% | |
| AGCCCAGCACAATCAAAGCT+TGG | - | chr8_1:80261952-80261971 | Msa1217770:intron | 50.0% | |
| AGCTCGGGTTTCAGATACCA+TGG | - | chr8_1:80261979-80261998 | Msa1217770:intron | 50.0% | |
| !! | TGGCTTCTGGAACATCACCA+TGG | + | chr8_1:80261999-80262018 | None:intergenic | 50.0% |
| !! | GGCTAGCCTTATTCTGATGG+AGG | - | chr8_1:80262351-80262370 | Msa1217770:CDS | 50.0% |
| ! | AGGTGGAGGAGCAGCTCTAA+TGG | - | chr8_1:80259839-80259858 | Msa1217770:three_prime_UTR | 55.0% |
| ! | TTCTTCGTTGCGGGTGTTGC+AGG | + | chr8_1:80259927-80259946 | None:intergenic | 55.0% |
| TGCAACACCCGCAACGAAGA+AGG | - | chr8_1:80259926-80259945 | Msa1217770:three_prime_UTR | 55.0% | |
| AGGCAGCTATTCCGTGGAAG+AGG | + | chr8_1:80260754-80260773 | None:intergenic | 55.0% | |
| TGACACAGGCAGCTATTCCG+TGG | + | chr8_1:80260760-80260779 | None:intergenic | 55.0% | |
| ! | GGTCAAGGGAGTGTGATCTC+TGG | - | chr8_1:80261778-80261797 | Msa1217770:intron | 55.0% |
| ! | AAGAAGCACAGCGCAGGTGG+AGG | - | chr8_1:80259825-80259844 | Msa1217770:three_prime_UTR | 60.0% |
| GGAGAAGCGGATGCAGAGAG+TGG | + | chr8_1:80259906-80259925 | None:intergenic | 60.0% | |
| ! | TGCGGGTGTTGCAGGAGAAG+CGG | + | chr8_1:80259919-80259938 | None:intergenic | 60.0% |
| ! | TCAAGAGTCCTCTGGCTCCC+TGG | - | chr8_1:80261678-80261697 | Msa1217770:intron | 60.0% |
| ! | GAGGCGAAGAAGCACAGCGC+AGG | - | chr8_1:80259819-80259838 | Msa1217770:three_prime_UTR | 65.0% |
| ! | GCGAAGAAGCACAGCGCAGG+TGG | - | chr8_1:80259822-80259841 | Msa1217770:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 80259659 | 80262648 | 80259659 | ID=Msa1217770;Name=Msa1217770 |
| chr8_1 | mRNA | 80259659 | 80262648 | 80259659 | ID=Msa1217770-mRNA-1;Parent=Msa1217770;Name=Msa1217770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=151|1|1|1|0.5|1|3|292|130 |
| chr8_1 | exon | 80259659 | 80260033 | 80259659 | ID=Msa1217770-mRNA-1:exon:28084;Parent=Msa1217770-mRNA-1 |
| chr8_1 | exon | 80262083 | 80262188 | 80262083 | ID=Msa1217770-mRNA-1:exon:28083;Parent=Msa1217770-mRNA-1 |
| chr8_1 | exon | 80262294 | 80262648 | 80262294 | ID=Msa1217770-mRNA-1:exon:28082;Parent=Msa1217770-mRNA-1 |
| chr8_1 | five_prime_UTR | 80262498 | 80262648 | 80262498 | ID=Msa1217770-mRNA-1:five_prime_utr;Parent=Msa1217770-mRNA-1 |
| chr8_1 | CDS | 80262294 | 80262497 | 80262294 | ID=Msa1217770-mRNA-1:cds;Parent=Msa1217770-mRNA-1 |
| chr8_1 | CDS | 80262083 | 80262188 | 80262083 | ID=Msa1217770-mRNA-1:cds;Parent=Msa1217770-mRNA-1 |
| chr8_1 | CDS | 80259951 | 80260033 | 80259951 | ID=Msa1217770-mRNA-1:cds;Parent=Msa1217770-mRNA-1 |
| chr8_1 | three_prime_UTR | 80259659 | 80259950 | 80259659 | ID=Msa1217770-mRNA-1:three_prime_utr;Parent=Msa1217770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
