AlfalfaGEDB | Msa1217770

M. sativa cultivar zhongmu-4 / Msa1217770

KEGG: K10418
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582
PFAM: PF01221.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217770	XP_003609697.1	99.231	130	1	0	1	130	1	130	1.58e-90	268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217770	sp\|Q78P75\|DYL2_RAT	68.605	86	27	0	45	130	4	89	2.04e-42	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217770	G7JLJ9	99.231	130	1	0	1	130	1	130	7.53e-91	268

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0158130	Msa1217770	0.804813	1.803879e-49	-8.615850e-47
Msa0175050	Msa1217770	-0.812553	4.000328e-51	-8.615850e-47
Msa0183010	Msa1217770	0.809818	1.567698e-50	-8.615850e-47
Msa0481120	Msa1217770	0.872586	2.838745e-67	-8.615850e-47
Msa0521620	Msa1217770	-0.801057	1.077249e-48	-8.615850e-47
Msa0743120	Msa1217770	0.809916	1.493222e-50	-8.615850e-47
Msa1217770	Msa1217930	0.880186	6.755561e-70	-8.615850e-47
Msa1217770	Msa1420270	-0.808221	3.444659e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217770	MtrunA17_Chr4g0067531	99.231	130	1	0	1	130	1	130	1.45e-94	268
Msa1217770	MtrunA17_Chr8g0360861	48.837	86	42	1	46	129	5	90	2.47e-26	95.1
Msa1217770	MtrunA17_Chr4g0059791	52.439	82	36	2	51	129	220	301	4.34e-21	86.3
Msa1217770	MtrunA17_Chr8g0391451	43.478	92	38	2	47	129	54	140	1.60e-18	76.3
Msa1217770	MtrunA17_Chr4g0063491	46.591	88	39	3	46	129	155	238	6.89e-18	76.6
Msa1217770	MtrunA17_Chr2g0331651	40.698	86	49	1	46	129	5	90	8.98e-17	70.1
Msa1217770	MtrunA17_Chr6g0485891	37.647	85	51	1	46	128	39	123	4.51e-15	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217770	AT4G15930.1	66.923	130	36	3	1	130	1	123	9.00e-58	175
Msa1217770	AT4G15930.2	58.654	104	36	3	1	104	1	97	1.00e-35	119
Msa1217770	AT5G20110.1	41.463	123	61	3	11	129	86	201	8.11e-20	81.3
Msa1217770	AT1G23220.1	43.023	86	46	1	47	129	36	121	2.56e-18	75.5
Msa1217770	AT1G52245.1	40.698	86	49	1	46	129	5	90	1.02e-17	72.8
Msa1217770	AT4G27360.1	38.824	85	50	1	46	128	5	89	9.50e-17	70.9
Msa1217770	AT3G16120.2	39.759	83	48	1	49	129	8	90	2.27e-16	69.3
Msa1217770	AT3G16120.1	39.759	83	48	1	49	129	8	90	2.27e-16	69.3

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Find 44 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACGACAGCGATATCAA+CGG	0.685652	8_1:+80262291	None:intergenic
AAGAAGCACAGCGCAGGTGG+AGG	0.466246	8_1:-80262460	Msa1217770:CDS
AAGGAGTTTGACAAGAGGCA+TGG	0.631606	8_1:-80262118	Msa1217770:CDS
AATTGAATTAGGCATTTGAG+AGG	0.599018	8_1:-80262177	Msa1217770:intron
ACAAGAGGCATGGTCCTACT+TGG	0.447517	8_1:-80262108	Msa1217770:CDS
AGATAATAATTTATGTTGAA+TGG	0.341950	8_1:+80259665	None:intergenic
AGGTGGAGGAGCAGCTCTAA+TGG	0.440034	8_1:-80262446	Msa1217770:CDS
ATAATGACCTTCTTCGTTGC+GGG	0.323218	8_1:+80262352	None:intergenic
ATATCTAATTTCATGCAAAC+TGG	0.351170	8_1:-80259801	Msa1217770:three_prime_UTR
ATTCTCTTGCTGTTGGTTCT+TGG	0.201234	8_1:+80262573	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAATTAGGCATTTGAG+AGG	-	chr8_1:80260108-80260127	Msa1217770:intron	30.0%
TGTGTAGTTAACAAAATGGA+AGG	-	chr8_1:80260406-80260425	Msa1217770:intron	30.0%
AAAGAACACAGAATACAAAG+TGG	+	chr8_1:80260708-80260727	None:intergenic	30.0%
AAACAGGTATGTCGTTAAAT+TGG	+	chr8_1:80260793-80260812	None:intergenic	30.0%
AATTTAACGACATACCTGTT+TGG	-	chr8_1:80260792-80260811	Msa1217770:intron	30.0%
AACACTATTAAGAGTTCTTC+AGG	+	chr8_1:80260911-80260930	None:intergenic	30.0%
AAGATGTTGGATGTTGAAAA+GGG	+	chr8_1:80261001-80261020	None:intergenic	30.0%
ATCTTTCATTCTACACTTCA+TGG	+	chr8_1:80261883-80261902	None:intergenic	30.0%
CATTAAAACTTTATGGCTTC+TGG	+	chr8_1:80262012-80262031	None:intergenic	30.0%
AAATGGCATGATATTTGTGA+TGG	+	chr8_1:80262068-80262087	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	80259659	80262648	80259659	ID=Msa1217770;Name=Msa1217770
chr8_1	mRNA	80259659	80262648	80259659	ID=Msa1217770-mRNA-1;Parent=Msa1217770;Name=Msa1217770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=151\|1\|1\|1\|0.5\|1\|3\|292\|130
chr8_1	exon	80259659	80260033	80259659	ID=Msa1217770-mRNA-1:exon:28084;Parent=Msa1217770-mRNA-1
chr8_1	exon	80262083	80262188	80262083	ID=Msa1217770-mRNA-1:exon:28083;Parent=Msa1217770-mRNA-1
chr8_1	exon	80262294	80262648	80262294	ID=Msa1217770-mRNA-1:exon:28082;Parent=Msa1217770-mRNA-1
chr8_1	five_prime_UTR	80262498	80262648	80262498	ID=Msa1217770-mRNA-1:five_prime_utr;Parent=Msa1217770-mRNA-1
chr8_1	CDS	80262294	80262497	80262294	ID=Msa1217770-mRNA-1:cds;Parent=Msa1217770-mRNA-1
chr8_1	CDS	80262083	80262188	80262083	ID=Msa1217770-mRNA-1:cds;Parent=Msa1217770-mRNA-1
chr8_1	CDS	80259951	80260033	80259951	ID=Msa1217770-mRNA-1:cds;Parent=Msa1217770-mRNA-1
chr8_1	three_prime_UTR	80259659	80259950	80259659	ID=Msa1217770-mRNA-1:three_prime_utr;Parent=Msa1217770-mRNA-1

Gene Sequence

>Msa1217770

ATGAGCGAGGAGGCGAAGAAGCACAGCGCAGGTGGAGGAGCAGCTCTAATGGCGAAATCCCTCACCGAAGATCGAAAACCACTTGTTACATCTCCACTCTCTGCATCCGCTTCTCCTGCAACACCCGCAACGAAGAAGGTCATTATCAAGAGTGCCGATATGCTCCCTGACATGCAAAAGGAAGCCGTTGATATCGCTGTCGTTGCATTTGAGAGGCACAGCGTAGAGAAAGATGTTGCAGAGACTATAAAGAAGGAGTTTGACAAGAGGCATGGTCCTACTTGGCATTGTATTGTTGGTCGCAATTTCGGTTCCTATGTGACTCATGAAACAAACCACTTTGTTTATTTCTATTTGGATCAGAAAGCAGTTTTGCTTTTCAAGTCTGGCTAG

Protein sequence

>Msa1217770

MSEEAKKHSAGGGAALMAKSLTEDRKPLVTSPLSASASPATPATKKVIIKSADMLPDMQKEAVDIAVVAFERHSVEKDVAETIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG*