Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482150 | XP_003608875.1 | 99.410 | 339 | 2 | 0 | 1 | 339 | 1 | 339 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482150 | sp|P34922|G3PC_PEA | 97.923 | 337 | 7 | 0 | 3 | 339 | 2 | 338 | 0.0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482150 | G7JML2 | 99.410 | 339 | 2 | 0 | 1 | 339 | 1 | 339 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0482150 | Msa1208650 | 0.888510 | 5.536906e-73 | -8.615850e-47 |
| Msa0482150 | Msa1378600 | 0.999373 | 1.155474e-306 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482150 | MtrunA17_Chr4g0057861 | 99.410 | 339 | 2 | 0 | 1 | 339 | 1 | 339 | 0.0 | 686 |
| Msa0482150 | MtrunA17_Chr6g0458861 | 85.586 | 333 | 48 | 0 | 4 | 336 | 2 | 334 | 0.0 | 590 |
| Msa0482150 | MtrunA17_Chr3g0122971 | 84.639 | 332 | 30 | 1 | 5 | 336 | 6 | 316 | 0.0 | 573 |
| Msa0482150 | MtrunA17_Chr2g0310421 | 71.386 | 332 | 94 | 1 | 5 | 336 | 82 | 412 | 7.72e-175 | 491 |
| Msa0482150 | MtrunA17_Chr8g0357071 | 81.673 | 251 | 32 | 4 | 86 | 324 | 59 | 307 | 1.26e-137 | 393 |
| Msa0482150 | MtrunA17_Chr3g0144151 | 48.680 | 341 | 166 | 7 | 4 | 338 | 84 | 421 | 3.33e-89 | 275 |
| Msa0482150 | MtrunA17_Chr8g0360951 | 87.838 | 148 | 9 | 2 | 179 | 326 | 1 | 139 | 7.57e-84 | 249 |
| Msa0482150 | MtrunA17_Chr7g0252641 | 47.130 | 331 | 169 | 5 | 4 | 331 | 68 | 395 | 2.90e-83 | 258 |
| Msa0482150 | MtrunA17_Chr2g0316821 | 83.673 | 49 | 8 | 0 | 219 | 267 | 7 | 55 | 1.17e-20 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482150 | AT3G04120.1 | 88.427 | 337 | 39 | 0 | 1 | 337 | 1 | 337 | 0.0 | 617 |
| Msa0482150 | AT1G13440.1 | 87.834 | 337 | 41 | 0 | 1 | 337 | 1 | 337 | 0.0 | 613 |
| Msa0482150 | AT1G13440.2 | 80.712 | 337 | 37 | 1 | 1 | 337 | 1 | 309 | 0.0 | 545 |
| Msa0482150 | AT1G79530.1 | 73.494 | 332 | 87 | 1 | 5 | 336 | 86 | 416 | 1.32e-179 | 504 |
| Msa0482150 | AT1G16300.1 | 72.892 | 332 | 89 | 1 | 5 | 336 | 84 | 414 | 4.42e-177 | 497 |
| Msa0482150 | AT1G42970.1 | 47.507 | 341 | 170 | 7 | 4 | 338 | 80 | 417 | 1.06e-91 | 281 |
| Msa0482150 | AT1G12900.3 | 48.640 | 331 | 164 | 5 | 4 | 331 | 14 | 341 | 8.71e-88 | 268 |
| Msa0482150 | AT1G12900.4 | 48.640 | 331 | 164 | 5 | 4 | 331 | 14 | 341 | 8.71e-88 | 268 |
| Msa0482150 | AT1G12900.1 | 48.640 | 331 | 164 | 5 | 4 | 331 | 63 | 390 | 3.92e-87 | 268 |
| Msa0482150 | AT1G12900.5 | 48.640 | 331 | 164 | 5 | 4 | 331 | 105 | 432 | 7.30e-87 | 268 |
| Msa0482150 | AT3G26650.1 | 47.432 | 331 | 168 | 5 | 4 | 331 | 60 | 387 | 4.17e-85 | 263 |
| Msa0482150 | AT1G12900.2 | 53.361 | 238 | 109 | 2 | 95 | 331 | 72 | 308 | 3.30e-70 | 222 |
Find 131 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTTACCGGATTTAATT+TGG | 0.089951 | 3_3:+88581140 | Msa0482150:three_prime_UTR |
| CTTAACAAAATTGTCATTTA+AGG | 0.104366 | 3_3:-88580704 | None:intergenic |
| AAATATGTTTCTTACTAAAT+TGG | 0.138521 | 3_3:-88581663 | None:intergenic |
| ATGGCCCATCAACAGTCTTC+TGG | 0.178049 | 3_3:-88580024 | None:intergenic |
| CTAGCCCATGGGATCTCTTC+TGG | 0.197666 | 3_3:-88578848 | None:intergenic |
| AAATGAAAAGTCTGCAATTT+TGG | 0.214398 | 3_3:+88581287 | Msa0482150:three_prime_UTR |
| GAAGAAATGAAATGAGAAAT+AGG | 0.224747 | 3_3:-88577935 | None:intergenic |
| TCTTCCACCTCTCCAGTCTT+TGG | 0.239282 | 3_3:-88580050 | None:intergenic |
| TAGGTTATCAATGACAGATT+TGG | 0.312865 | 3_3:+88579867 | Msa0482150:intron |
| CCAAGACAACTCGTTGCTTA+TGG | 0.330150 | 3_3:-88581110 | None:intergenic |
| GGGTAGGTCAAGTTTGGTTC+CGG | 0.332740 | 3_3:-88577871 | None:intergenic |
| GCATTTACCGGATTTAATTT+GGG | 0.345001 | 3_3:+88581141 | Msa0482150:three_prime_UTR |
| GGTAGGTCAAGTTTGGTTCC+GGG | 0.358342 | 3_3:-88577870 | None:intergenic |
| GTTGATTCCGATCTTGATCT+TGG | 0.361687 | 3_3:-88578173 | None:intergenic |
| CTGTGAGCAAAGACAGTTAC+TGG | 0.361869 | 3_3:-88578612 | None:intergenic |
| TAGCCCATGGGATCTCTTCT+GGG | 0.364602 | 3_3:-88578847 | None:intergenic |
| CGTGACTTGTATGATCTCTA+TGG | 0.365089 | 3_3:+88581368 | Msa0482150:three_prime_UTR |
| GGCAGAAATGATGACCTTCT+TGG | 0.370496 | 3_3:-88579639 | None:intergenic |
| AAAACACTACGGTTCAATAA+GGG | 0.372319 | 3_3:-88581074 | None:intergenic |
| TGGCCCATCAACAGTCTTCT+GGG | 0.376977 | 3_3:-88580023 | None:intergenic |
| GTCGTCTCTACCGACTTTAT+TGG | 0.379304 | 3_3:+88580512 | Msa0482150:CDS |
| TAAAATAATGACTTGTTTGT+GGG | 0.385398 | 3_3:-88577893 | None:intergenic |
| ATGACAACGAGTTGGGTTAC+AGG | 0.391838 | 3_3:+88580740 | Msa0482150:CDS |
| AGCAGCTTTGATTTGATCAT+AGG | 0.392271 | 3_3:-88580333 | None:intergenic |
| AAGGGGCAAGCTTCAAGTTC+AGG | 0.394337 | 3_3:-88581056 | None:intergenic |
| CAAAGCTGCTGCTCATTTGA+AGG | 0.396278 | 3_3:+88578922 | Msa0482150:CDS |
| CATGGCGTATATGTGAAACT+TGG | 0.413845 | 3_3:-88581182 | None:intergenic |
| ATTTGGAAGAATCGGACGTT+TGG | 0.417594 | 3_3:+88578311 | Msa0482150:CDS |
| GCCGTGGTAGTGCTATAAAT+TGG | 0.427633 | 3_3:+88580959 | Msa0482150:three_prime_UTR |
| AACATGGGAGCATCCTTACT+AGG | 0.429169 | 3_3:-88579662 | None:intergenic |
| CCTCTCCAGTCTTTGGCTGA+TGG | 0.430890 | 3_3:-88580043 | None:intergenic |
| ATTTAAGGCAATTCCTGCCT+TGG | 0.435729 | 3_3:-88580689 | None:intergenic |
| CATCATTTCTGCCCCTAGTA+AGG | 0.438346 | 3_3:+88579649 | Msa0482150:CDS |
| CCATAAGCAACGAGTTGTCT+TGG | 0.444128 | 3_3:+88581110 | Msa0482150:three_prime_UTR |
| ATAAAATAATGACTTGTTTG+TGG | 0.448595 | 3_3:-88577894 | None:intergenic |
| AGCAGCAGCTTTGTCCTTGT+CGG | 0.451014 | 3_3:-88578912 | None:intergenic |
| GACTCTAAAACCCTTCTCTT+CGG | 0.451972 | 3_3:+88578582 | Msa0482150:CDS |
| ATTATCACCCAAATTAAATC+CGG | 0.452564 | 3_3:-88581148 | None:intergenic |
| GACAGATTTGGCATTGTTGA+GGG | 0.455882 | 3_3:+88579879 | Msa0482150:CDS |
| AAAGAACGATGATGAGTAGA+AGG | 0.455958 | 3_3:-88577963 | None:intergenic |
| GATGCTCCCATGTTTGTTGT+TGG | 0.458991 | 3_3:+88579671 | Msa0482150:CDS |
| ATGGGCCATCAGCCAAAGAC+TGG | 0.460505 | 3_3:+88580038 | Msa0482150:CDS |
| TTTCATCACCACTGATTACA+TGG | 0.466658 | 3_3:+88578389 | Msa0482150:CDS |
| GCCACCCAGAAGACTGTTGA+TGG | 0.469781 | 3_3:+88580019 | Msa0482150:intron |
| TCTTGGTATGACAACGAGTT+GGG | 0.473725 | 3_3:+88580733 | Msa0482150:CDS |
| AAAGTGCTTCCTGCTTTGAA+TGG | 0.474900 | 3_3:+88580227 | Msa0482150:CDS |
| TTTAAGTATGACAGTGTTCA+CGG | 0.475837 | 3_3:+88578528 | Msa0482150:CDS |
| CTGACAGGATTTGGAAGAAT+CGG | 0.477978 | 3_3:+88578303 | Msa0482150:intron |
| AAGAAATGAAATGAGAAATA+GGG | 0.480244 | 3_3:-88577934 | None:intergenic |
| AAGCATCAGATGAGATGAAA+GGG | 0.480271 | 3_3:-88581601 | None:intergenic |
| GCTTTGAATGGAAAGTTGAC+TGG | 0.484568 | 3_3:+88580239 | Msa0482150:CDS |
| TAGAGAGAGTAGAGTGATAG+CGG | 0.489639 | 3_3:-88577986 | None:intergenic |
| CTCTTGGTATGACAACGAGT+TGG | 0.490488 | 3_3:+88580732 | Msa0482150:CDS |
| CCTTCTCGAGCCTCACTGTA+AGG | 0.498253 | 3_3:-88580304 | None:intergenic |
| GGCAACTTGAAAGGAATCCT+TGG | 0.503097 | 3_3:+88580473 | Msa0482150:CDS |
| AACATCATTCCTAGCAGCAC+TGG | 0.508273 | 3_3:+88580085 | Msa0482150:CDS |
| CAGTAACTGTCTTTGCTCAC+AGG | 0.512766 | 3_3:+88578613 | Msa0482150:CDS |
| AGCATCTTTGATGCCAAGGC+AGG | 0.515199 | 3_3:+88580676 | Msa0482150:CDS |
| ACATGGGAGCATCCTTACTA+GGG | 0.515453 | 3_3:-88579661 | None:intergenic |
| CTGGCTTCTGACCGAAGAGA+AGG | 0.515502 | 3_3:-88578593 | None:intergenic |
| GTCAACTTTCCATTCAAAGC+AGG | 0.517781 | 3_3:-88580236 | None:intergenic |
| GATTCCTTTCAAGTTGCCCT+CGG | 0.519543 | 3_3:-88580468 | None:intergenic |
| TGACAGATTTGGCATTGTTG+AGG | 0.526967 | 3_3:+88579878 | Msa0482150:CDS |
| TCTGTGTCTTACTAGGCTGT+TGG | 0.529290 | 3_3:+88580203 | Msa0482150:intron |
| GTCAAGCATCTTTGATGCCA+AGG | 0.530071 | 3_3:+88580672 | Msa0482150:CDS |
| CTGCCTTGCACCACTTGCTA+AGG | 0.531519 | 3_3:+88579757 | Msa0482150:CDS |
| CCGACTTTATTGGTGATACC+AGG | 0.534272 | 3_3:+88580522 | Msa0482150:CDS |
| GAGTCCGAGGGCAACTTGAA+AGG | 0.535557 | 3_3:+88580464 | Msa0482150:CDS |
| GTTGGTAGTGCAGCTAGCAT+TGG | 0.535726 | 3_3:-88579735 | None:intergenic |
| ACCACTGTTCATTCTATCAC+TGG | 0.537052 | 3_3:+88579909 | Msa0482150:CDS |
| CTTTCTATAGCTTTATTACG+TGG | 0.539940 | 3_3:+88581621 | Msa0482150:three_prime_UTR |
| TTTCTGCAGGGAGGAGTCCG+AGG | 0.540118 | 3_3:+88580451 | Msa0482150:intron |
| AAAGAGGCCTAACGGCTGCT+AGG | 0.542903 | 3_3:-88581011 | None:intergenic |
| CAACTGAGACATCCACAGTT+GGG | 0.550377 | 3_3:-88580277 | None:intergenic |
| GAGATCCCATGGGCTAGCAC+TGG | 0.550739 | 3_3:+88578854 | Msa0482150:CDS |
| AGCTTTGATTTGATCATAGG+TGG | 0.553575 | 3_3:-88580330 | None:intergenic |
| ATGACAGTGTTCACGGACAA+TGG | 0.557529 | 3_3:+88578535 | Msa0482150:CDS |
| AATCTAGGGTGGTGCCAAGA+AGG | 0.565778 | 3_3:+88579625 | Msa0482150:intron |
| AAAGCATCAGATGAGATGAA+AGG | 0.565850 | 3_3:-88581602 | None:intergenic |
| TGAATAATTACCACCACCCA+TGG | 0.568534 | 3_3:-88578039 | None:intergenic |
| ACAACTGAGACATCCACAGT+TGG | 0.572472 | 3_3:-88580278 | None:intergenic |
| TCAGCACCAGTGCTAGCCCA+TGG | 0.575207 | 3_3:-88578860 | None:intergenic |
| TTAGCAGCTCCAGTGCTGCT+AGG | 0.576093 | 3_3:-88580094 | None:intergenic |
| GAATGGAAAGTTGACTGGAA+TGG | 0.578821 | 3_3:+88580244 | Msa0482150:CDS |
| AAAATAATGACTTGTTTGTG+GGG | 0.578904 | 3_3:-88577892 | None:intergenic |
| ATGTAATCAGTGGTGATGAA+AGG | 0.581417 | 3_3:-88578387 | None:intergenic |
| AGCAAGTGGTGCAAGGCAGT+TGG | 0.584713 | 3_3:-88579753 | None:intergenic |
| AAACACTACGGTTCAATAAG+GGG | 0.585174 | 3_3:-88581073 | None:intergenic |
| GGATCAGCCAAGATCAAGAT+CGG | 0.587412 | 3_3:+88578166 | Msa0482150:intron |
| TTGGAGATGATATCAAACTC+TGG | 0.587916 | 3_3:-88579716 | None:intergenic |
| GTTAACACCAACAACAAACA+TGG | 0.591563 | 3_3:-88579678 | None:intergenic |
| GGAACCCAGAAGAGATCCCA+TGG | 0.591598 | 3_3:+88578843 | Msa0482150:intron |
| AACGATGAGGTCAACCACAC+GGG | 0.595280 | 3_3:-88580904 | None:intergenic |
| TGGCTTCTGACCGAAGAGAA+GGG | 0.598953 | 3_3:-88578592 | None:intergenic |
| TTTGATTTGATCATAGGTGG+CGG | 0.599256 | 3_3:-88580327 | None:intergenic |
| CAGCACCAGTGCTAGCCCAT+GGG | 0.602177 | 3_3:-88578859 | None:intergenic |
| TGTTGTTGGTGTTAACGAGA+AGG | 0.604083 | 3_3:+88579685 | Msa0482150:CDS |
| AAATAATGACTTGTTTGTGG+GGG | 0.608109 | 3_3:-88577891 | None:intergenic |
| ATTGGATTGAATATCTAACA+AGG | 0.612667 | 3_3:-88581645 | None:intergenic |
| AAGATCAAGATCGGAATCAA+CGG | 0.613475 | 3_3:+88578175 | Msa0482150:CDS |
| GATATTATTGTTGAGTCCAC+CGG | 0.613504 | 3_3:+88578881 | Msa0482150:CDS |
| AGACATCCACAGTTGGGACA+CGG | 0.619930 | 3_3:-88580271 | None:intergenic |
| GGTAGAGACGACATCGTCCT+CGG | 0.620352 | 3_3:-88580501 | None:intergenic |
| GAACGATGAGGTCAACCACA+CGG | 0.620524 | 3_3:-88580905 | None:intergenic |
| AAGAGACATGCAAAAGAGCA+CGG | 0.620699 | 3_3:-88581516 | None:intergenic |
| TCAGCCAAAGACTGGAGAGG+TGG | 0.620752 | 3_3:+88580046 | Msa0482150:CDS |
| TTGGATTGAATATCTAACAA+GGG | 0.623650 | 3_3:-88581644 | None:intergenic |
| CTATTAGCCTAGCAGCCGTT+AGG | 0.623959 | 3_3:+88581004 | Msa0482150:three_prime_UTR |
| ATGCACCGGTCACGTAAGCG+TGG | 0.625905 | 3_3:+88577841 | None:intergenic |
| TTCTGCAGGGAGGAGTCCGA+GGG | 0.627559 | 3_3:+88580452 | Msa0482150:intron |
| CCTTACAGTGAGGCTCGAGA+AGG | 0.630029 | 3_3:+88580304 | Msa0482150:CDS |
| ATACCTTAGCAAGTGGTGCA+AGG | 0.631223 | 3_3:-88579760 | None:intergenic |
| CCACCCAGAAGACTGTTGAT+GGG | 0.632542 | 3_3:+88580020 | Msa0482150:CDS |
| GGCATTCCGTGTCCCAACTG+TGG | 0.636309 | 3_3:+88580265 | Msa0482150:CDS |
| CATCGTCCTCGGTGTAACCA+AGG | 0.636984 | 3_3:-88580490 | None:intergenic |
| CCTGGTATCACCAATAAAGT+CGG | 0.637238 | 3_3:-88580522 | None:intergenic |
| GCTAGGAATGATGTTAAATG+AGG | 0.638580 | 3_3:-88580077 | None:intergenic |
| GCTCATAATACCTTAGCAAG+TGG | 0.648538 | 3_3:-88579767 | None:intergenic |
| CCCATCAACAGTCTTCTGGG+TGG | 0.650761 | 3_3:-88580020 | None:intergenic |
| ACAATTCACGACGAATCACA+TGG | 0.652384 | 3_3:-88581542 | None:intergenic |
| TTTAAGCTGTTACATTGCCG+TGG | 0.662429 | 3_3:+88580943 | Msa0482150:exon |
| ACGTAAGCGTGGATAAAACC+CGG | 0.666813 | 3_3:+88577852 | None:intergenic |
| CCATCAGCCAAAGACTGGAG+AGG | 0.667444 | 3_3:+88580043 | Msa0482150:CDS |
| TTAACACCAACAACAAACAT+GGG | 0.669578 | 3_3:-88579677 | None:intergenic |
| CATGGGAGCATCCTTACTAG+GGG | 0.690619 | 3_3:-88579660 | None:intergenic |
| GCCAATTTATAGCACTACCA+CGG | 0.691846 | 3_3:-88580960 | None:intergenic |
| CAGTTGTTGACCTTACAGTG+AGG | 0.703068 | 3_3:+88580294 | Msa0482150:CDS |
| GAACCCAGAAGAGATCCCAT+GGG | 0.703112 | 3_3:+88578844 | Msa0482150:CDS |
| GTGATTCGTCGTGAATTGTG+AGG | 0.730098 | 3_3:+88581546 | Msa0482150:three_prime_UTR |
| ACCAGTGATAGAATGAACAG+TGG | 0.744850 | 3_3:-88579910 | None:intergenic |
| AGGAATCCTTGGTTACACCG+AGG | 0.796368 | 3_3:+88580484 | Msa0482150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGACTAATTGAAATATTAA+TGG | - | chr3_3:88578104-88578123 | None:intergenic | 15.0% |
| !! | ATTGGTATAATATTGATATT+TGG | + | chr3_3:88578775-88578794 | Msa0482150:intron | 15.0% |
| !! | ACTTATTACATTTAAAAAAG+AGG | - | chr3_3:88581030-88581049 | None:intergenic | 15.0% |
| !!! | TAAAATAATGACTTGTTTGT+GGG | - | chr3_3:88577896-88577915 | None:intergenic | 20.0% |
| !!! | ATAAAATAATGACTTGTTTG+TGG | - | chr3_3:88577897-88577916 | None:intergenic | 20.0% |
| !! | AAGAAATGAAATGAGAAATA+GGG | - | chr3_3:88577937-88577956 | None:intergenic | 20.0% |
| !! | AATTAAGGAAAATAATGAAG+AGG | - | chr3_3:88578068-88578087 | None:intergenic | 20.0% |
| !! | GGAAAATTAACGAAAAATTA+AGG | - | chr3_3:88578083-88578102 | None:intergenic | 20.0% |
| !! | TAATGTTTATATATGCAACT+AGG | + | chr3_3:88578681-88578700 | Msa0482150:intron | 20.0% |
| !! | TATGTATGTGTACTTAATTT+CGG | + | chr3_3:88578708-88578727 | Msa0482150:intron | 20.0% |
| !! | TGTTACTGTTTAATTAGTAT+TGG | + | chr3_3:88578757-88578776 | Msa0482150:intron | 20.0% |
| !!! | AATTTTAGTAAACAGTAATC+AGG | - | chr3_3:88578978-88578997 | None:intergenic | 20.0% |
| !! | TGTATGTTGATATTATTATG+TGG | + | chr3_3:88579140-88579159 | Msa0482150:intron | 20.0% |
| !! | TTTAAAAGAGACAAATGTTA+CGG | - | chr3_3:88579230-88579249 | None:intergenic | 20.0% |
| !!! | TGTTTTTGTTTGTTTAATCT+AGG | + | chr3_3:88579610-88579629 | Msa0482150:intron | 20.0% |
| !!! | GTTTTTGTTTGTTTAATCTA+GGG | + | chr3_3:88579611-88579630 | Msa0482150:intron | 20.0% |
| !! | TTAGAGAATAAAATATCAGT+TGG | - | chr3_3:88579792-88579811 | None:intergenic | 20.0% |
| !!! | TACCTGTTTATTTATTTTGT+AGG | + | chr3_3:88579848-88579867 | Msa0482150:intron | 20.0% |
| !! | AACCTACAAAATAAATAAAC+AGG | - | chr3_3:88579853-88579872 | None:intergenic | 20.0% |
| !! | GGATTTGATATCTTATTATT+TGG | + | chr3_3:88579959-88579978 | Msa0482150:intron | 20.0% |
| !!! | CTTAACAAAATTGTCATTTA+AGG | - | chr3_3:88580707-88580726 | None:intergenic | 20.0% |
| !!! | AAAATAATGACTTGTTTGTG+GGG | - | chr3_3:88577895-88577914 | None:intergenic | 25.0% |
| !! | AAATGAGAAATAGGGTTTTA+AGG | - | chr3_3:88577929-88577948 | None:intergenic | 25.0% |
| ! | GAAGAAATGAAATGAGAAAT+AGG | - | chr3_3:88577938-88577957 | None:intergenic | 25.0% |
| ! | AGAATTCGAAACAAAAACAA+AGG | - | chr3_3:88578143-88578162 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGTTTCGAATTC+TGG | + | chr3_3:88578142-88578161 | Msa0482150:intron | 25.0% |
| !!! | TGTCTATTTTTTTGTGCTTT+AGG | + | chr3_3:88578822-88578841 | Msa0482150:intron | 25.0% |
| ! | TTTGAAGGTTTGTATTTCAT+TGG | + | chr3_3:88578937-88578956 | Msa0482150:intron | 25.0% |
| !!! | ATATTACAATAGTTTCTAGC+AGG | + | chr3_3:88579491-88579510 | Msa0482150:intron | 25.0% |
| ! | CTTCTATTTACTGAATCTTA+TGG | + | chr3_3:88579541-88579560 | Msa0482150:intron | 25.0% |
| ! | TTATTCTCTAATTTCCATGT+TGG | + | chr3_3:88579801-88579820 | Msa0482150:intron | 25.0% |
| ! | AAATAAACAGGTAACAGTTA+TGG | - | chr3_3:88579841-88579860 | None:intergenic | 25.0% |
| ! | CTAAAATACTTGATCACAAA+GGG | - | chr3_3:88580388-88580407 | None:intergenic | 25.0% |
| ! | GCAGAAAATTAAACAAAACA+GGG | - | chr3_3:88580880-88580899 | None:intergenic | 25.0% |
| ! | TGCAGAAAATTAAACAAAAC+AGG | - | chr3_3:88580881-88580900 | None:intergenic | 25.0% |
| !! | TTGGATTTTTATGCATTTAC+CGG | + | chr3_3:88581129-88581148 | Msa0482150:three_prime_UTR | 25.0% |
| ! | ATTATCACCCAAATTAAATC+CGG | - | chr3_3:88581151-88581170 | None:intergenic | 25.0% |
| !! | AGTTTTTAATGCTCTTTTCA+TGG | - | chr3_3:88581203-88581222 | None:intergenic | 25.0% |
| !! | AAATGAAAAGTCTGCAATTT+TGG | + | chr3_3:88581287-88581306 | Msa0482150:three_prime_UTR | 25.0% |
| ! | TTGGATTGAATATCTAACAA+GGG | - | chr3_3:88581647-88581666 | None:intergenic | 25.0% |
| ! | ATTGGATTGAATATCTAACA+AGG | - | chr3_3:88581648-88581667 | None:intergenic | 25.0% |
| !! | AAATAATGACTTGTTTGTGG+GGG | - | chr3_3:88577894-88577913 | None:intergenic | 30.0% |
| ! | TAATTTTGTTCGTAACTGAC+AGG | + | chr3_3:88578288-88578307 | Msa0482150:intron | 30.0% |
| ! | ATTTTGTACCATGTAATCAG+TGG | - | chr3_3:88578400-88578419 | None:intergenic | 30.0% |
| ATGGTACAAAATTCTTCCTT+CGG | + | chr3_3:88578408-88578427 | Msa0482150:intron | 30.0% | |
| AATAGACAAACAAAAACCGA+AGG | - | chr3_3:88578427-88578446 | None:intergenic | 30.0% | |
| !! | AGATCTGATTTATTTCTGTG+TGG | + | chr3_3:88578485-88578504 | Msa0482150:intron | 30.0% |
| TTTAAGTATGACAGTGTTCA+CGG | + | chr3_3:88578528-88578547 | Msa0482150:CDS | 30.0% | |
| ! | ACTTAATTTCGGTGTAGATA+TGG | + | chr3_3:88578719-88578738 | Msa0482150:intron | 30.0% |
| ! | CTTAATTTCGGTGTAGATAT+GGG | + | chr3_3:88578720-88578739 | Msa0482150:intron | 30.0% |
| AACTATTATGTGCAGCAATT+GGG | - | chr3_3:88579015-88579034 | None:intergenic | 30.0% | |
| ! | CTATTTTCTAAACATGCTCA+TGG | + | chr3_3:88579181-88579200 | Msa0482150:intron | 30.0% |
| TAACAATACATTGCAAGTTG+TGG | - | chr3_3:88579517-88579536 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTATGAAGTGTAG+TGG | + | chr3_3:88579578-88579597 | Msa0482150:intron | 30.0% |
| !! | AGTTTTGTATGAAGTGTAGT+GGG | + | chr3_3:88579579-88579598 | Msa0482150:intron | 30.0% |
| TTTGTTTGTTTAATCTAGGG+TGG | + | chr3_3:88579614-88579633 | Msa0482150:intron | 30.0% | |
| TTAACACCAACAACAAACAT+GGG | - | chr3_3:88579680-88579699 | None:intergenic | 30.0% | |
| TAGGTTATCAATGACAGATT+TGG | + | chr3_3:88579867-88579886 | Msa0482150:intron | 30.0% | |
| CAGCATGAAAAGAATGAATT+AGG | - | chr3_3:88579987-88580006 | None:intergenic | 30.0% | |
| ATTAGACAACACAATAACAG+TGG | - | chr3_3:88580155-88580174 | None:intergenic | 30.0% | |
| ! | TTTTCATTCTGTGTCTTACT+AGG | + | chr3_3:88580196-88580215 | Msa0482150:intron | 30.0% |
| GCTAAAATACTTGATCACAA+AGG | - | chr3_3:88580389-88580408 | None:intergenic | 30.0% | |
| !!! | TTGTGATCAAGTATTTTAGC+AGG | + | chr3_3:88580389-88580408 | Msa0482150:intron | 30.0% |
| !! | TTTAACATTTCTGTTTCTGC+AGG | + | chr3_3:88580438-88580457 | Msa0482150:intron | 30.0% |
| !! | TTAACATTTCTGTTTCTGCA+GGG | + | chr3_3:88580439-88580458 | Msa0482150:intron | 30.0% |
| CTGCTAGTATAATATTTACC+TGG | - | chr3_3:88580543-88580562 | None:intergenic | 30.0% | |
| CAGGTAAATATTATACTAGC+AGG | + | chr3_3:88580541-88580560 | Msa0482150:intron | 30.0% | |
| ! | TTTTGTGTTATCAATGTTCC+AGG | + | chr3_3:88580650-88580669 | Msa0482150:intron | 30.0% |
| ! | ATTTTGTTAAGCTTGTCTCT+TGG | + | chr3_3:88580716-88580735 | Msa0482150:CDS | 30.0% |
| TCAACAATAAACCATACGAA+AGG | - | chr3_3:88580781-88580800 | None:intergenic | 30.0% | |
| TTCAAGAATTTCAACCAACT+AGG | - | chr3_3:88580813-88580832 | None:intergenic | 30.0% | |
| CATTTAAAAAAGAGGCCTAA+CGG | - | chr3_3:88581022-88581041 | None:intergenic | 30.0% | |
| AAAACACTACGGTTCAATAA+GGG | - | chr3_3:88581077-88581096 | None:intergenic | 30.0% | |
| AAAAACACTACGGTTCAATA+AGG | - | chr3_3:88581078-88581097 | None:intergenic | 30.0% | |
| ! | TTATTGAACCGTAGTGTTTT+TGG | + | chr3_3:88581077-88581096 | Msa0482150:three_prime_UTR | 30.0% |
| TGCATTTACCGGATTTAATT+TGG | + | chr3_3:88581140-88581159 | Msa0482150:three_prime_UTR | 30.0% | |
| ! | GCATTTACCGGATTTAATTT+GGG | + | chr3_3:88581141-88581160 | Msa0482150:three_prime_UTR | 30.0% |
| !! | CTTTCTATAGCTTTATTACG+TGG | + | chr3_3:88581621-88581640 | Msa0482150:three_prime_UTR | 30.0% |
| AAAGAACGATGATGAGTAGA+AGG | - | chr3_3:88577966-88577985 | None:intergenic | 35.0% | |
| !! | GTTTTTGTTTCGAATTCTGG+TGG | + | chr3_3:88578145-88578164 | Msa0482150:intron | 35.0% |
| AAGATCAAGATCGGAATCAA+CGG | + | chr3_3:88578175-88578194 | Msa0482150:CDS | 35.0% | |
| CTCTTCATTTCTGCATAGAT+CGG | + | chr3_3:88578222-88578241 | Msa0482150:intron | 35.0% | |
| ! | ATGTAATCAGTGGTGATGAA+AGG | - | chr3_3:88578390-88578409 | None:intergenic | 35.0% |
| ! | TTTCATCACCACTGATTACA+TGG | + | chr3_3:88578389-88578408 | Msa0482150:CDS | 35.0% |
| GATATTATTGTTGAGTCCAC+CGG | + | chr3_3:88578881-88578900 | Msa0482150:CDS | 35.0% | |
| CAACTATTATGTGCAGCAAT+TGG | - | chr3_3:88579016-88579035 | None:intergenic | 35.0% | |
| ATCATATATGTGCTGCAACT+GGG | - | chr3_3:88579070-88579089 | None:intergenic | 35.0% | |
| AACATACATGTGCAGCAATT+GGG | - | chr3_3:88579128-88579147 | None:intergenic | 35.0% | |
| TTCTTCAATAGCAGCTATAC+TGG | + | chr3_3:88579294-88579313 | Msa0482150:intron | 35.0% | |
| GTTAACACCAACAACAAACA+TGG | - | chr3_3:88579681-88579700 | None:intergenic | 35.0% | |
| TTGGAGATGATATCAAACTC+TGG | - | chr3_3:88579719-88579738 | None:intergenic | 35.0% | |
| GCTAGGAATGATGTTAAATG+AGG | - | chr3_3:88580080-88580099 | None:intergenic | 35.0% | |
| ATGTGATGATTCTCTTGATG+TGG | + | chr3_3:88580173-88580192 | Msa0482150:intron | 35.0% | |
| !! | TTTGATTTGATCATAGGTGG+CGG | - | chr3_3:88580330-88580349 | None:intergenic | 35.0% |
| !! | AGCTTTGATTTGATCATAGG+TGG | - | chr3_3:88580333-88580352 | None:intergenic | 35.0% |
| !! | AGCAGCTTTGATTTGATCAT+AGG | - | chr3_3:88580336-88580355 | None:intergenic | 35.0% |
| GTTGATATCTGAATCCTAGT+TGG | + | chr3_3:88580796-88580815 | Msa0482150:intron | 35.0% | |
| GACTGTAAGAAACAAAAAGC+AGG | - | chr3_3:88580985-88581004 | None:intergenic | 35.0% | |
| AAACACTACGGTTCAATAAG+GGG | - | chr3_3:88581076-88581095 | None:intergenic | 35.0% | |
| TTGAGCAACCAAAAACACTA+CGG | - | chr3_3:88581088-88581107 | None:intergenic | 35.0% | |
| TGCATCTCTTGAAGAAAAAG+TGG | + | chr3_3:88581246-88581265 | Msa0482150:three_prime_UTR | 35.0% | |
| GCATCTCTTGAAGAAAAAGT+GGG | + | chr3_3:88581247-88581266 | Msa0482150:three_prime_UTR | 35.0% | |
| ! | GCAGACTTTTCATTTCATCT+AGG | - | chr3_3:88581282-88581301 | None:intergenic | 35.0% |
| !! | TCTGCAATTTTGGTCGAATT+TGG | + | chr3_3:88581297-88581316 | Msa0482150:three_prime_UTR | 35.0% |
| ! | TTTTGCATAAGCAGTTATCG+TGG | + | chr3_3:88581330-88581349 | Msa0482150:three_prime_UTR | 35.0% |
| AAGCATCAGATGAGATGAAA+GGG | - | chr3_3:88581604-88581623 | None:intergenic | 35.0% | |
| ! | AAAGCATCAGATGAGATGAA+AGG | - | chr3_3:88581605-88581624 | None:intergenic | 35.0% |
| TAGAGAGAGTAGAGTGATAG+CGG | - | chr3_3:88577989-88578008 | None:intergenic | 40.0% | |
| !!! | TCCTCTTTGTTTTTCAGCCA+TGG | + | chr3_3:88578022-88578041 | Msa0482150:exon | 40.0% |
| !!! | CCTCTTTGTTTTTCAGCCAT+GGG | + | chr3_3:88578023-88578042 | Msa0482150:exon | 40.0% |
| TGAATAATTACCACCACCCA+TGG | - | chr3_3:88578042-88578061 | None:intergenic | 40.0% | |
| ! | GTTGATTCCGATCTTGATCT+TGG | - | chr3_3:88578176-88578195 | None:intergenic | 40.0% |
| CAGAAATGAAGAGAGATCGA+AGG | - | chr3_3:88578215-88578234 | None:intergenic | 40.0% | |
| TGTTCGTAACTGACAGGATT+TGG | + | chr3_3:88578294-88578313 | Msa0482150:intron | 40.0% | |
| CTGACAGGATTTGGAAGAAT+CGG | + | chr3_3:88578303-88578322 | Msa0482150:intron | 40.0% | |
| ATTTGGAAGAATCGGACGTT+TGG | + | chr3_3:88578311-88578330 | Msa0482150:CDS | 40.0% | |
| !! | GACTCTAAAACCCTTCTCTT+CGG | + | chr3_3:88578582-88578601 | Msa0482150:CDS | 40.0% |
| CATCATATATGTGCTGCAAC+TGG | - | chr3_3:88579071-88579090 | None:intergenic | 40.0% | |
| CAACATACATGTGCAGCAAT+TGG | - | chr3_3:88579129-88579148 | None:intergenic | 40.0% | |
| AGTGTATCGCAGAACAATAG+TGG | - | chr3_3:88579356-88579375 | None:intergenic | 40.0% | |
| TTGTCACATAGCTGCTATAG+TGG | + | chr3_3:88579391-88579410 | Msa0482150:intron | 40.0% | |
| ACTATATCACAACTGCGTAG+CGG | + | chr3_3:88579415-88579434 | Msa0482150:intron | 40.0% | |
| !! | TGTTGTTGGTGTTAACGAGA+AGG | + | chr3_3:88579685-88579704 | Msa0482150:CDS | 40.0% |
| GCTCATAATACCTTAGCAAG+TGG | - | chr3_3:88579770-88579789 | None:intergenic | 40.0% | |
| GTAACAGTTATGGCCTCATA+CGG | - | chr3_3:88579831-88579850 | None:intergenic | 40.0% | |
| TGACAGATTTGGCATTGTTG+AGG | + | chr3_3:88579878-88579897 | Msa0482150:CDS | 40.0% | |
| GACAGATTTGGCATTGTTGA+GGG | + | chr3_3:88579879-88579898 | Msa0482150:CDS | 40.0% | |
| ACCACTGTTCATTCTATCAC+TGG | + | chr3_3:88579909-88579928 | Msa0482150:CDS | 40.0% | |
| ACCAGTGATAGAATGAACAG+TGG | - | chr3_3:88579913-88579932 | None:intergenic | 40.0% | |
| CTGTTCATTCTATCACTGGT+AGG | + | chr3_3:88579913-88579932 | Msa0482150:intron | 40.0% | |
| TAGTGCTAGTGAGTAACTCT+TGG | + | chr3_3:88579938-88579957 | Msa0482150:intron | 40.0% | |
| ! | AAAGTGCTTCCTGCTTTGAA+TGG | + | chr3_3:88580227-88580246 | Msa0482150:CDS | 40.0% |
| GTCAACTTTCCATTCAAAGC+AGG | - | chr3_3:88580239-88580258 | None:intergenic | 40.0% | |
| ! | GCTTTGAATGGAAAGTTGAC+TGG | + | chr3_3:88580239-88580258 | Msa0482150:CDS | 40.0% |
| GAATGGAAAGTTGACTGGAA+TGG | + | chr3_3:88580244-88580263 | Msa0482150:CDS | 40.0% | |
| CCTGGTATCACCAATAAAGT+CGG | - | chr3_3:88580525-88580544 | None:intergenic | 40.0% | |
| ! | ATTTAAGGCAATTCCTGCCT+TGG | - | chr3_3:88580692-88580711 | None:intergenic | 40.0% |
| TCTTGGTATGACAACGAGTT+GGG | + | chr3_3:88580733-88580752 | Msa0482150:CDS | 40.0% | |
| ATTCAGTCTGACCTTTCGTA+TGG | + | chr3_3:88580767-88580786 | Msa0482150:intron | 40.0% | |
| ! | GTTTTGCAATGTGAACGATG+AGG | - | chr3_3:88580920-88580939 | None:intergenic | 40.0% |
| TTTAAGCTGTTACATTGCCG+TGG | + | chr3_3:88580943-88580962 | Msa0482150:exon | 40.0% | |
| GCCAATTTATAGCACTACCA+CGG | - | chr3_3:88580963-88580982 | None:intergenic | 40.0% | |
| CATGGCGTATATGTGAAACT+TGG | - | chr3_3:88581185-88581204 | None:intergenic | 40.0% | |
| ! | CGTGACTTGTATGATCTCTA+TGG | + | chr3_3:88581368-88581387 | Msa0482150:three_prime_UTR | 40.0% |
| AAGAGACATGCAAAAGAGCA+CGG | - | chr3_3:88581519-88581538 | None:intergenic | 40.0% | |
| ACAATTCACGACGAATCACA+TGG | - | chr3_3:88581545-88581564 | None:intergenic | 40.0% | |
| !! | AATGACTTGTTTGTGGGGGT+AGG | - | chr3_3:88577890-88577909 | None:intergenic | 45.0% |
| CCCATGGCTGAAAAACAAAG+AGG | - | chr3_3:88578026-88578045 | None:intergenic | 45.0% | |
| !!! | CTTTGTTTTTCAGCCATGGG+TGG | + | chr3_3:88578026-88578045 | Msa0482150:exon | 45.0% |
| GGATCAGCCAAGATCAAGAT+CGG | + | chr3_3:88578166-88578185 | Msa0482150:intron | 45.0% | |
| ATGACAGTGTTCACGGACAA+TGG | + | chr3_3:88578535-88578554 | Msa0482150:CDS | 45.0% | |
| CTGTGAGCAAAGACAGTTAC+TGG | - | chr3_3:88578615-88578634 | None:intergenic | 45.0% | |
| CAGTAACTGTCTTTGCTCAC+AGG | + | chr3_3:88578613-88578632 | Msa0482150:CDS | 45.0% | |
| GTCCTTGTCGGTAAAAACAC+CGG | - | chr3_3:88578903-88578922 | None:intergenic | 45.0% | |
| CAAAGCTGCTGCTCATTTGA+AGG | + | chr3_3:88578922-88578941 | Msa0482150:CDS | 45.0% | |
| TCGCAGGTAGCTGAAAATAG+CGG | - | chr3_3:88579453-88579472 | None:intergenic | 45.0% | |
| CTACCTGCGATTGACAACAA+TGG | + | chr3_3:88579463-88579482 | Msa0482150:intron | 45.0% | |
| CAACCATTGTTGTCAATCGC+AGG | - | chr3_3:88579469-88579488 | None:intergenic | 45.0% | |
| GGCAGAAATGATGACCTTCT+TGG | - | chr3_3:88579642-88579661 | None:intergenic | 45.0% | |
| CATCATTTCTGCCCCTAGTA+AGG | + | chr3_3:88579649-88579668 | Msa0482150:CDS | 45.0% | |
| !! | ACATGGGAGCATCCTTACTA+GGG | - | chr3_3:88579664-88579683 | None:intergenic | 45.0% |
| !! | AACATGGGAGCATCCTTACT+AGG | - | chr3_3:88579665-88579684 | None:intergenic | 45.0% |
| !! | GATGCTCCCATGTTTGTTGT+TGG | + | chr3_3:88579671-88579690 | Msa0482150:CDS | 45.0% |
| ATACCTTAGCAAGTGGTGCA+AGG | - | chr3_3:88579763-88579782 | None:intergenic | 45.0% | |
| CCTCATACGGTAAACCAACA+TGG | - | chr3_3:88579818-88579837 | None:intergenic | 45.0% | |
| !! | CCATGTTGGTTTACCGTATG+AGG | + | chr3_3:88579815-88579834 | Msa0482150:intron | 45.0% |
| AACATCATTCCTAGCAGCAC+TGG | + | chr3_3:88580085-88580104 | Msa0482150:CDS | 45.0% | |
| TCTGTGTCTTACTAGGCTGT+TGG | + | chr3_3:88580203-88580222 | Msa0482150:intron | 45.0% | |
| CAACTGAGACATCCACAGTT+GGG | - | chr3_3:88580280-88580299 | None:intergenic | 45.0% | |
| ACAACTGAGACATCCACAGT+TGG | - | chr3_3:88580281-88580300 | None:intergenic | 45.0% | |
| CAGTTGTTGACCTTACAGTG+AGG | + | chr3_3:88580294-88580313 | Msa0482150:CDS | 45.0% | |
| !! | ACATTTCTGTTTCTGCAGGG+AGG | + | chr3_3:88580442-88580461 | Msa0482150:intron | 45.0% |
| !! | GATTCCTTTCAAGTTGCCCT+CGG | - | chr3_3:88580471-88580490 | None:intergenic | 45.0% |
| GGCAACTTGAAAGGAATCCT+TGG | + | chr3_3:88580473-88580492 | Msa0482150:CDS | 45.0% | |
| !! | GTCGTCTCTACCGACTTTAT+TGG | + | chr3_3:88580512-88580531 | Msa0482150:CDS | 45.0% |
| ! | CCGACTTTATTGGTGATACC+AGG | + | chr3_3:88580522-88580541 | Msa0482150:CDS | 45.0% |
| GTCAAGCATCTTTGATGCCA+AGG | + | chr3_3:88580672-88580691 | Msa0482150:CDS | 45.0% | |
| CTCTTGGTATGACAACGAGT+TGG | + | chr3_3:88580732-88580751 | Msa0482150:CDS | 45.0% | |
| ! | ATGACAACGAGTTGGGTTAC+AGG | + | chr3_3:88580740-88580759 | Msa0482150:CDS | 45.0% |
| ! | AATTTTCTGCAGTACCCGTG+TGG | + | chr3_3:88580890-88580909 | Msa0482150:intron | 45.0% |
| ! | GCCGTGGTAGTGCTATAAAT+TGG | + | chr3_3:88580959-88580978 | Msa0482150:three_prime_UTR | 45.0% |
| CCAAGACAACTCGTTGCTTA+TGG | - | chr3_3:88581113-88581132 | None:intergenic | 45.0% | |
| CCATAAGCAACGAGTTGTCT+TGG | + | chr3_3:88581110-88581129 | Msa0482150:three_prime_UTR | 45.0% | |
| GTGATTCGTCGTGAATTGTG+AGG | + | chr3_3:88581546-88581565 | Msa0482150:three_prime_UTR | 45.0% | |
| ! | GGTAGGTCAAGTTTGGTTCC+GGG | - | chr3_3:88577873-88577892 | None:intergenic | 50.0% |
| ! | GGGTAGGTCAAGTTTGGTTC+CGG | - | chr3_3:88577874-88577893 | None:intergenic | 50.0% |
| TTGTGGGGGTAGGTCAAGTT+TGG | - | chr3_3:88577880-88577899 | None:intergenic | 50.0% | |
| !! | TGTTTTTCAGCCATGGGTGG+TGG | + | chr3_3:88578029-88578048 | Msa0482150:exon | 50.0% |
| TGGCTTCTGACCGAAGAGAA+GGG | - | chr3_3:88578595-88578614 | None:intergenic | 50.0% | |
| GAACCCAGAAGAGATCCCAT+GGG | + | chr3_3:88578844-88578863 | Msa0482150:CDS | 50.0% | |
| TAGCCCATGGGATCTCTTCT+GGG | - | chr3_3:88578850-88578869 | None:intergenic | 50.0% | |
| CTTGTCGGTAAAAACACCGG+TGG | - | chr3_3:88578900-88578919 | None:intergenic | 50.0% | |
| !! | CACCGGTGTTTTTACCGACA+AGG | + | chr3_3:88578898-88578917 | Msa0482150:CDS | 50.0% |
| ! | AGCAGCAGCTTTGTCCTTGT+CGG | - | chr3_3:88578915-88578934 | None:intergenic | 50.0% |
| GCTATGCTGCTATTGCGTAG+CGG | + | chr3_3:88579318-88579337 | Msa0482150:intron | 50.0% | |
| !! | TGCTATTGCGTAGCGGACTT+TGG | + | chr3_3:88579325-88579344 | Msa0482150:intron | 50.0% |
| ! | AATCTAGGGTGGTGCCAAGA+AGG | + | chr3_3:88579625-88579644 | Msa0482150:intron | 50.0% |
| !! | CATGGGAGCATCCTTACTAG+GGG | - | chr3_3:88579663-88579682 | None:intergenic | 50.0% |
| !! | GTTGGTAGTGCAGCTAGCAT+TGG | - | chr3_3:88579738-88579757 | None:intergenic | 50.0% |
| CCACCCAGAAGACTGTTGAT+GGG | + | chr3_3:88580020-88580039 | Msa0482150:CDS | 50.0% | |
| TGGCCCATCAACAGTCTTCT+GGG | - | chr3_3:88580026-88580045 | None:intergenic | 50.0% | |
| ATGGCCCATCAACAGTCTTC+TGG | - | chr3_3:88580027-88580046 | None:intergenic | 50.0% | |
| TCTTCCACCTCTCCAGTCTT+TGG | - | chr3_3:88580053-88580072 | None:intergenic | 50.0% | |
| AGACATCCACAGTTGGGACA+CGG | - | chr3_3:88580274-88580293 | None:intergenic | 50.0% | |
| AGGAATCCTTGGTTACACCG+AGG | + | chr3_3:88580484-88580503 | Msa0482150:CDS | 50.0% | |
| !! | CAGTCTAGAAGTGTTCACGC+TGG | + | chr3_3:88580564-88580583 | Msa0482150:intron | 50.0% |
| !! | TCTAGAAGTGTTCACGCTGG+TGG | + | chr3_3:88580567-88580586 | Msa0482150:intron | 50.0% |
| GGCATCAAAGATGCTTGACC+TGG | - | chr3_3:88580671-88580690 | None:intergenic | 50.0% | |
| AGCATCTTTGATGCCAAGGC+AGG | + | chr3_3:88580676-88580695 | Msa0482150:CDS | 50.0% | |
| AACGATGAGGTCAACCACAC+GGG | - | chr3_3:88580907-88580926 | None:intergenic | 50.0% | |
| GAACGATGAGGTCAACCACA+CGG | - | chr3_3:88580908-88580927 | None:intergenic | 50.0% | |
| ! | CTATTAGCCTAGCAGCCGTT+AGG | + | chr3_3:88581004-88581023 | Msa0482150:three_prime_UTR | 50.0% |
| ! | AAGGGGCAAGCTTCAAGTTC+AGG | - | chr3_3:88581059-88581078 | None:intergenic | 50.0% |
| CTGGCTTCTGACCGAAGAGA+AGG | - | chr3_3:88578596-88578615 | None:intergenic | 55.0% | |
| GGAACCCAGAAGAGATCCCA+TGG | + | chr3_3:88578843-88578862 | Msa0482150:intron | 55.0% | |
| CTAGCCCATGGGATCTCTTC+TGG | - | chr3_3:88578851-88578870 | None:intergenic | 55.0% | |
| AGCAAGTGGTGCAAGGCAGT+TGG | - | chr3_3:88579756-88579775 | None:intergenic | 55.0% | |
| ! | CTGCCTTGCACCACTTGCTA+AGG | + | chr3_3:88579757-88579776 | Msa0482150:CDS | 55.0% |
| CAGTCTTCTGGGTGGCTGAT+TGG | - | chr3_3:88580015-88580034 | None:intergenic | 55.0% | |
| GCCACCCAGAAGACTGTTGA+TGG | + | chr3_3:88580019-88580038 | Msa0482150:intron | 55.0% | |
| CCCATCAACAGTCTTCTGGG+TGG | - | chr3_3:88580023-88580042 | None:intergenic | 55.0% | |
| ATGGGCCATCAGCCAAAGAC+TGG | + | chr3_3:88580038-88580057 | Msa0482150:CDS | 55.0% | |
| CCTCTCCAGTCTTTGGCTGA+TGG | - | chr3_3:88580046-88580065 | None:intergenic | 55.0% | |
| CCATCAGCCAAAGACTGGAG+AGG | + | chr3_3:88580043-88580062 | Msa0482150:CDS | 55.0% | |
| TCAGCCAAAGACTGGAGAGG+TGG | + | chr3_3:88580046-88580065 | Msa0482150:CDS | 55.0% | |
| ! | TTAGCAGCTCCAGTGCTGCT+AGG | - | chr3_3:88580097-88580116 | None:intergenic | 55.0% |
| CCTTCTCGAGCCTCACTGTA+AGG | - | chr3_3:88580307-88580326 | None:intergenic | 55.0% | |
| CCTTACAGTGAGGCTCGAGA+AGG | + | chr3_3:88580304-88580323 | Msa0482150:CDS | 55.0% | |
| GAGTCCGAGGGCAACTTGAA+AGG | + | chr3_3:88580464-88580483 | Msa0482150:CDS | 55.0% | |
| ! | CATCGTCCTCGGTGTAACCA+AGG | - | chr3_3:88580493-88580512 | None:intergenic | 55.0% |
| GGTAGAGACGACATCGTCCT+CGG | - | chr3_3:88580504-88580523 | None:intergenic | 55.0% | |
| AAAGAGGCCTAACGGCTGCT+AGG | - | chr3_3:88581014-88581033 | None:intergenic | 55.0% | |
| !! | GAGATCCCATGGGCTAGCAC+TGG | + | chr3_3:88578854-88578873 | Msa0482150:CDS | 60.0% |
| CAGCACCAGTGCTAGCCCAT+GGG | - | chr3_3:88578862-88578881 | None:intergenic | 60.0% | |
| TCAGCACCAGTGCTAGCCCA+TGG | - | chr3_3:88578863-88578882 | None:intergenic | 60.0% | |
| GGCATTCCGTGTCCCAACTG+TGG | + | chr3_3:88580265-88580284 | Msa0482150:CDS | 60.0% | |
| TTTCTGCAGGGAGGAGTCCG+AGG | + | chr3_3:88580451-88580470 | Msa0482150:intron | 60.0% | |
| TTCTGCAGGGAGGAGTCCGA+GGG | + | chr3_3:88580452-88580471 | Msa0482150:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 88577854 | 88581671 | 88577854 | ID=Msa0482150;Name=Msa0482150 |
| chr3_3 | mRNA | 88577854 | 88581671 | 88577854 | ID=Msa0482150-mRNA-1;Parent=Msa0482150;Name=Msa0482150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=187|1|1|1|0.81|0.91|12|724|339 |
| chr3_3 | exon | 88577854 | 88578050 | 88577854 | ID=Msa0482150-mRNA-1:exon:25839;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88578173 | 88578196 | 88578173 | ID=Msa0482150-mRNA-1:exon:25840;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88578310 | 88578410 | 88578310 | ID=Msa0482150-mRNA-1:exon:25841;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88578519 | 88578634 | 88578519 | ID=Msa0482150-mRNA-1:exon:25842;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88578844 | 88578943 | 88578844 | ID=Msa0482150-mRNA-1:exon:25843;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88579632 | 88579778 | 88579632 | ID=Msa0482150-mRNA-1:exon:25844;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88579870 | 88579930 | 88579870 | ID=Msa0482150-mRNA-1:exon:25845;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88580020 | 88580117 | 88580020 | ID=Msa0482150-mRNA-1:exon:25846;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88580218 | 88580360 | 88580218 | ID=Msa0482150-mRNA-1:exon:25847;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88580460 | 88580543 | 88580460 | ID=Msa0482150-mRNA-1:exon:25848;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88580672 | 88580761 | 88580672 | ID=Msa0482150-mRNA-1:exon:25849;Parent=Msa0482150-mRNA-1 |
| chr3_3 | exon | 88580902 | 88581671 | 88580902 | ID=Msa0482150-mRNA-1:exon:25850;Parent=Msa0482150-mRNA-1 |
| chr3_3 | five_prime_UTR | 88577854 | 88578040 | 88577854 | ID=Msa0482150-mRNA-1:five_prime_utr;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88578041 | 88578050 | 88578041 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88578173 | 88578196 | 88578173 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88578310 | 88578410 | 88578310 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88578519 | 88578634 | 88578519 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88578844 | 88578943 | 88578844 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88579632 | 88579778 | 88579632 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88579870 | 88579930 | 88579870 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88580020 | 88580117 | 88580020 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88580218 | 88580360 | 88580218 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88580460 | 88580543 | 88580460 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88580672 | 88580761 | 88580672 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | CDS | 88580902 | 88580947 | 88580902 | ID=Msa0482150-mRNA-1:cds;Parent=Msa0482150-mRNA-1 |
| chr3_3 | three_prime_UTR | 88580948 | 88581671 | 88580948 | ID=Msa0482150-mRNA-1:three_prime_utr;Parent=Msa0482150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
