AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170230 MtrunA17_Chr1g0187801 97.678 603 14 0 1 603 1 603 0.0 1222
Msa0170230 MtrunA17_Chr1g0167721 77.094 585 128 5 4 584 2 584 0.0 933
Msa0170230 MtrunA17_Chr5g0426121 54.460 639 266 7 2 625 5 633 0.0 701
Msa0170230 MtrunA17_Chr4g0003821 28.545 536 335 19 1 510 11 524 8.25e-51 184
Msa0170230 MtrunA17_Chr3g0138841 28.367 490 277 18 2 446 94 554 2.90e-28 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170230 AT1G04400.1 69.519 561 158 4 5 562 6 556 0.0 812
Msa0170230 AT1G04400.2 69.519 561 158 4 5 562 6 556 0.0 812
Msa0170230 AT4G08920.1 57.774 566 222 6 7 563 15 572 0.0 667
Msa0170230 AT3G15620.1 29.545 528 316 17 6 501 26 529 1.39e-52 189
Msa0170230 AT5G24850.1 30.105 475 270 20 2 444 82 526 3.07e-34 137
Msa0170230 AT3G15620.2 29.009 424 249 15 6 397 26 429 7.59e-32 129

Find 245 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATAACAATTCCTTTAT+TGG 0.085373 1_4:+54202236 Msa0170230:three_prime_UTR
CAAGGCTTTAACAGAATTTA+TGG 0.120110 1_4:+54199041 Msa0170230:CDS
ACTCTTCCTTGCACCCTTTC+AGG 0.148344 1_4:-54202136 None:intergenic
CACAGAAAACAGTTCATTTA+TGG 0.162448 1_4:-54201624 None:intergenic
TCAGAAAGTGCCAGCATTTC+AGG 0.164857 1_4:+54200942 Msa0170230:CDS
TAAAATTGTCCTTCCTCTTT+AGG 0.172518 1_4:-54197852 None:intergenic
CAAGACTATCAAAATATTTA+AGG 0.174603 1_4:-54201730 None:intergenic
TCGTCTACTAGATTAGTTTA+TGG 0.184761 1_4:-54201763 None:intergenic
GCCATATCTATATCAATTAT+TGG 0.201692 1_4:-54200748 None:intergenic
CATTTCCCATATCTTGAATA+TGG 0.213847 1_4:-54200791 None:intergenic
TGCCTTACATATTCTCCTTC+TGG 0.214099 1_4:-54200613 None:intergenic
AATGGGGAATGAAGTATTTC+TGG 0.219485 1_4:+54199511 Msa0170230:CDS
TGTATGTTATTAACTCAATA+AGG 0.229124 1_4:-54202015 None:intergenic
TGGCTATATTCTCAATAAAA+TGG 0.230875 1_4:+54201645 Msa0170230:three_prime_UTR
TCTTATCTAAGTTGAAAATA+AGG 0.233821 1_4:-54197212 None:intergenic
TCAAAGAATGTAAGGGCTTT+AGG 0.244937 1_4:-54202774 None:intergenic
CTGTATTCCCTGTGTTTATA+TGG 0.246769 1_4:+54197826 Msa0170230:CDS
CTAATAGGTAGTTCATTCTT+AGG 0.252046 1_4:-54200967 None:intergenic
CTCAAGCCATATTCAAGATA+TGG 0.261352 1_4:+54200785 Msa0170230:CDS
CCCTGAACCTGAATTAACTA+TGG 0.263332 1_4:-54202640 None:intergenic
TTTGAAGCCTAGGTAGAATA+TGG 0.264844 1_4:+54197719 Msa0170230:exon
CCCATAGTTAATTCAGGTTC+AGG 0.267310 1_4:+54202639 Msa0170230:three_prime_UTR
GAACCATTGTTTGGTTTAGA+AGG 0.269151 1_4:+54197751 Msa0170230:CDS
GTATTTCTGGGACACGCTTT+TGG 0.272715 1_4:+54199524 Msa0170230:CDS
AAGCTTGCTATGGAAATTCT+AGG 0.296623 1_4:+54202305 Msa0170230:three_prime_UTR
GAGCTATACTCAGAAGCTTT+AGG 0.299491 1_4:-54202738 None:intergenic
AAGAAAATCCACCAATCTAT+AGG 0.299613 1_4:-54202214 None:intergenic
GAAGTTCCCATAGTTAATTC+AGG 0.301958 1_4:+54202633 Msa0170230:three_prime_UTR
ACTCATGAGAGAGCACTTCT+TGG 0.306648 1_4:+54199306 Msa0170230:CDS
CATGTGGGCTGAGTTGGTTT+TGG 0.306649 1_4:+54197442 Msa0170230:five_prime_UTR
TCCTTAAGGAGGACAACTTT+TGG 0.310889 1_4:-54200886 None:intergenic
TTGCATACTACTTCGCTATC+TGG 0.313513 1_4:-54197477 None:intergenic
CTAAGAATGAACTACCTATT+AGG 0.318143 1_4:+54200968 Msa0170230:CDS
AAATGTTCAATAGAGGATTT+AGG 0.326416 1_4:+54198943 Msa0170230:CDS
CAAGCAGCATCAAAAGCTTC+TGG 0.338602 1_4:+54200814 Msa0170230:CDS
CTCCAAGTCTTGAAGTTTGA+CGG 0.343433 1_4:-54199360 None:intergenic
TATTATACAAAAGGCCTTGA+TGG 0.344194 1_4:-54202161 None:intergenic
TTATCAGTGAAAAGCTATAA+TGG 0.349616 1_4:+54198520 Msa0170230:CDS
TGTTGCTTCTACCTTGGAAA+TGG 0.350799 1_4:+54199493 Msa0170230:CDS
TGCAAGCATCTCTGCCAAAA+AGG 0.354280 1_4:-54198607 None:intergenic
TATCAGTGAAAAGCTATAAT+GGG 0.356330 1_4:+54198521 Msa0170230:CDS
CTGTAGAGCAAGTGTCTTCA+TGG 0.357346 1_4:-54201077 None:intergenic
ATTCCTTTATTGAGCCTTGA+TGG 0.361770 1_4:+54202051 Msa0170230:three_prime_UTR
TCCAAAAGTTGTCCTCCTTA+AGG 0.363395 1_4:+54200885 Msa0170230:CDS
CTCTTAGTCCAATTGCTCTA+AGG 0.366113 1_4:-54199248 None:intergenic
CAAGGTTGTTGCTCCAATAA+AGG 0.367546 1_4:-54202249 None:intergenic
GTTGCTTCTACCTTGGAAAT+GGG 0.372170 1_4:+54199494 Msa0170230:CDS
ATGAGCACTGCAGCTGCTAC+TGG 0.373841 1_4:-54201586 None:intergenic
CACCACCTTGAAACTCTTCC+TGG 0.373919 1_4:-54197876 None:intergenic
TCCAATAATTGATATAGATA+TGG 0.381151 1_4:+54200747 Msa0170230:CDS
AAACCAAGCAACGCGTTACT+AGG 0.385656 1_4:+54198985 Msa0170230:CDS
CAGTGCTCATGGAAAGAAAA+TGG 0.390156 1_4:+54201599 Msa0170230:CDS
TGTATGTAGGAATGGAAGAT+AGG 0.391374 1_4:-54197138 None:intergenic
ATGAATATTCAAAGAATGTA+AGG 0.392850 1_4:-54202782 None:intergenic
AAGTTCTTCATCAGAATCAA+TGG 0.399345 1_4:-54202551 None:intergenic
TTGATAAGATGATTCTGTAT+TGG 0.399357 1_4:-54202819 None:intergenic
TGCAGGAATGAGAGAACTTT+GGG 0.399544 1_4:+54199413 Msa0170230:CDS
TCTATATCAATTATTGGATT+CGG 0.400812 1_4:-54200742 None:intergenic
CTTAGTGTGCTCAGAGCATC+AGG 0.402882 1_4:+54200697 Msa0170230:CDS
GTTGTGTTTAACCATCTCTA+TGG 0.405567 1_4:+54198026 Msa0170230:CDS
ATATGCATCAAGTTCCAAAA+AGG 0.405729 1_4:-54201824 None:intergenic
TTATCCCCGTATCTCCATTT+CGG 0.407052 1_4:+54199126 Msa0170230:CDS
TGGTCTCGAACCAGTGAAAC+AGG 0.407880 1_4:-54198466 None:intergenic
TTCCCATCAAGGCTCAATAA+AGG 0.408230 1_4:-54202054 None:intergenic
AGAAAATCCACCAATCTATA+GGG 0.409775 1_4:-54202213 None:intergenic
CTCATTCCTGCATCAACTAA+AGG 0.411661 1_4:-54199402 None:intergenic
ATAAGTATTAAGAATAAGAT+TGG 0.412388 1_4:-54202101 None:intergenic
CGTCCTAGTAACGCGTTGCT+TGG 0.415085 1_4:-54198988 None:intergenic
CGCTCAAGCTCGTGACCGTC+TGG 0.421155 1_4:-54199600 None:intergenic
ATGAGAGAACTTTGGGCTAC+AGG 0.422513 1_4:+54199420 Msa0170230:CDS
CTTCTACAAGACCAGATTAG+TGG 0.424225 1_4:-54202579 None:intergenic
ATATTTAAGGACTTCTCATT+CGG 0.428113 1_4:-54201717 None:intergenic
GAACTTGAAGACCACTAATC+TGG 0.429168 1_4:+54202568 Msa0170230:three_prime_UTR
AATTGTCATGAAATCAATAT+CGG 0.432971 1_4:+54202602 Msa0170230:three_prime_UTR
CAAGGTGGAATAAGCGAAAC+AGG 0.434780 1_4:-54198643 None:intergenic
TTTATCAGATCCTGTTTCAC+TGG 0.435781 1_4:+54198456 Msa0170230:intron
CTTATCTAAGTTGAAAATAA+GGG 0.436200 1_4:-54197211 None:intergenic
ACAGAATTGCTCTCAACATA+TGG 0.438313 1_4:-54202696 None:intergenic
GTAGCAATAGAACCATTGTT+TGG 0.440981 1_4:+54197742 Msa0170230:CDS
TGTCCCTTTCACAAGTTTGA+AGG 0.442030 1_4:-54197421 None:intergenic
CAGCACTAGCTGCTGCTGCT+AGG 0.442114 1_4:+54197796 Msa0170230:CDS
ATGCAGGAATGAGAGAACTT+TGG 0.446720 1_4:+54199412 Msa0170230:CDS
TCTTGAATATGGCTTGAGTC+AGG 0.448589 1_4:-54200780 None:intergenic
CTAGCAGCAGCAGCTAGTGC+TGG 0.448793 1_4:-54197795 None:intergenic
TGAAAATGTTGCTTCTACCT+TGG 0.450718 1_4:+54199487 Msa0170230:CDS
GATGTAACCTCCTCTGATGA+TGG 0.452559 1_4:+54202272 Msa0170230:three_prime_UTR
TCTCGAACCAAGTGATTTCA+AGG 0.453164 1_4:-54197931 None:intergenic
TCACACTCAACTCTCCGAAA+TGG 0.453446 1_4:-54199140 None:intergenic
TCAAGCCATATTCAAGATAT+GGG 0.453453 1_4:+54200786 Msa0170230:CDS
ACTATCTTTCACATGATTCA+CGG 0.453888 1_4:-54201037 None:intergenic
TTGAAACTATAACTCTGATT+CGG 0.455014 1_4:-54199455 None:intergenic
AAAGTAGTGTCCCTATAGAT+TGG 0.456375 1_4:+54202203 Msa0170230:three_prime_UTR
TTCTTAGGATCCTGAAATGC+TGG 0.457403 1_4:-54200952 None:intergenic
TTGGAACTTGATGCATATGA+AGG 0.457765 1_4:+54201829 Msa0170230:three_prime_UTR
CCATAGTTAATTCAGGTTCA+GGG 0.459746 1_4:+54202640 Msa0170230:three_prime_UTR
GACATGTATACATGCTAGTA+AGG 0.463142 1_4:+54201872 Msa0170230:three_prime_UTR
CACTACTTTGAAAGAAGTCT+TGG 0.464493 1_4:-54202189 None:intergenic
GTATGTTATTAACTCAATAA+GGG 0.465621 1_4:-54202014 None:intergenic
GGCTACCCTTTAGTTGATGC+AGG 0.466577 1_4:+54199396 Msa0170230:CDS
TTGGCACATTATTATACAAA+AGG 0.466771 1_4:-54202170 None:intergenic
TAGAAGGGATCTTAGAATTG+AGG 0.468841 1_4:+54197767 Msa0170230:CDS
TCATTCCTGCATCAACTAAA+GGG 0.470820 1_4:-54199401 None:intergenic
CTGAGTGGATCCATCATCCT+TGG 0.471071 1_4:+54200665 Msa0170230:CDS
CCAAAATCTTATCAAAGAAA+AGG 0.471643 1_4:-54197177 None:intergenic
AGCACTAGCTGCTGCTGCTA+GGG 0.473785 1_4:+54197797 Msa0170230:CDS
GAGATGCTTGCACAAGCAAA+TGG 0.474718 1_4:+54198618 Msa0170230:CDS
CGGTCACGAGCTTGAGCGCT+TGG 0.474915 1_4:+54199605 Msa0170230:CDS
AACTCTCCGAAATGGAGATA+CGG 0.477912 1_4:-54199132 None:intergenic
CTCGGCTGGCAGTATATCTC+AGG 0.480304 1_4:+54199570 Msa0170230:CDS
CCTTGATGGGAACTCATCAT+TGG 0.480346 1_4:+54202065 Msa0170230:three_prime_UTR
TAACTAAAGAATAATAATAG+AGG 0.481793 1_4:-54197360 None:intergenic
CTAGCTGCTGCTGCTAGGGA+TGG 0.482748 1_4:+54197801 Msa0170230:CDS
AAAGAAAAGCTAGTGGAACT+TGG 0.484127 1_4:+54198496 Msa0170230:CDS
ATCCGTCAAACTTCAAGACT+TGG 0.488443 1_4:+54199358 Msa0170230:CDS
AGTCAAGAAATGTTCAATAG+AGG 0.489309 1_4:+54198936 Msa0170230:CDS
CTAGGACGAGCATGGTCTCC+AGG 0.489522 1_4:+54199003 Msa0170230:CDS
ACTCTCCGAAATGGAGATAC+GGG 0.489556 1_4:-54199131 None:intergenic
TTGTGGAACTGAAAATGAAT+AGG 0.492993 1_4:-54201136 None:intergenic
ATCCAGAAGGAGAATATGTA+AGG 0.496224 1_4:+54200611 Msa0170230:CDS
GATCAGTCCTTGAAATCACT+TGG 0.496518 1_4:+54197924 Msa0170230:CDS
ATGCCTTCAAACTTGTGAAA+GGG 0.496931 1_4:+54197418 Msa0170230:five_prime_UTR
TACTTCACTACTCCAAGAAT+AGG 0.498999 1_4:+54199073 Msa0170230:CDS
GAGTACTCTCAATGCTCTCT+TGG 0.499541 1_4:+54197974 Msa0170230:CDS
AGTAGCAGCTGCAGTGCTCA+TGG 0.499803 1_4:+54201588 Msa0170230:CDS
GGATCTGTTGTATGAGCCTT+GGG 0.500509 1_4:+54198543 Msa0170230:CDS
AGTTCTTCATCAGAATCAAT+GGG 0.501988 1_4:-54202550 None:intergenic
AACCATTGTTTGGTTTAGAA+GGG 0.502214 1_4:+54197752 Msa0170230:CDS
CTTTATTGGAGCAACAACCT+TGG 0.503468 1_4:+54202250 Msa0170230:three_prime_UTR
TTTATCCAGGAAGAGTTTCA+AGG 0.505143 1_4:+54197871 Msa0170230:CDS
CAAACTTGAGAACTAAGATA+AGG 0.505569 1_4:-54197276 None:intergenic
TTGTCAGCATTGCTCCAACC+TGG 0.505947 1_4:-54199021 None:intergenic
AGATCACATGTCAAGGAGAA+AGG 0.510272 1_4:-54197056 None:intergenic
CTACTCCAAGAATAGGCAAA+AGG 0.511893 1_4:+54199080 Msa0170230:CDS
AAGGGACATGTGGGCTGAGT+TGG 0.512399 1_4:+54197436 Msa0170230:five_prime_UTR
TTCCTTTATTGAGCCTTGAT+GGG 0.513632 1_4:+54202052 Msa0170230:three_prime_UTR
ACAACAAGAGATCCATGGAT+TGG 0.515592 1_4:+54202516 Msa0170230:three_prime_UTR
ATTATACAAAAGGCCTTGAT+GGG 0.516458 1_4:-54202160 None:intergenic
AGCCGAGGATATCACATTCA+AGG 0.517876 1_4:-54199554 None:intergenic
TGAAGAGAAGAGAAAGAACA+TGG 0.517976 1_4:+54201008 Msa0170230:CDS
AGCTTCTGGCTCTGAAGCAA+GGG 0.519234 1_4:+54200828 Msa0170230:CDS
ATGGGGAATGAAGTATTTCT+GGG 0.522424 1_4:+54199512 Msa0170230:CDS
GAAGCAGTCTTTAGTTCACT+TGG 0.523042 1_4:+54197902 Msa0170230:CDS
AAGCTTCTGGCTCTGAAGCA+AGG 0.524562 1_4:+54200827 Msa0170230:CDS
AATTCAGGTTCAGGGCATGC+AGG 0.527226 1_4:+54202648 Msa0170230:three_prime_UTR
GTTGGCATTCTTGCCAACTC+AGG 0.527793 1_4:-54200643 None:intergenic
TGTTCACAAGTGTTTATCAC+CGG 0.530213 1_4:-54202349 None:intergenic
CAGGAAGAGTTTCAAGGTGG+TGG 0.530377 1_4:+54197877 Msa0170230:CDS
GATGCCTTCAAACTTGTGAA+AGG 0.535690 1_4:+54197417 Msa0170230:five_prime_UTR
CTGTAAGGTGAGAAGGATCA+AGG 0.536891 1_4:+54202715 Msa0170230:three_prime_UTR
ACATGCAGTGTATGTAGGAA+TGG 0.537066 1_4:-54197146 None:intergenic
GTTTAGAAAGAAGCTTGCTA+TGG 0.539191 1_4:+54202295 Msa0170230:three_prime_UTR
TCGCATAAAGCAGATATTGT+GGG 0.539284 1_4:+54199182 Msa0170230:CDS
GGGATCTGTTGTATGAGCCT+TGG 0.542320 1_4:+54198542 Msa0170230:CDS
ATGTAACCTCCTCTGATGAT+GGG 0.543378 1_4:+54202273 Msa0170230:three_prime_UTR
AGCAATTCTGTAAGGTGAGA+AGG 0.545659 1_4:+54202708 Msa0170230:three_prime_UTR
TTGAAGCCTAGGTAGAATAT+GGG 0.546382 1_4:+54197720 Msa0170230:exon
AAGAATAGGCAAAAGGTTGG+TGG 0.546393 1_4:+54199087 Msa0170230:CDS
GACGAGCATGGTCTCCAGGT+TGG 0.548035 1_4:+54199007 Msa0170230:CDS
GTGGTGCATTCCAAGGATGA+TGG 0.551180 1_4:-54200675 None:intergenic
AAGGCAATGGCTACCTGAGT+TGG 0.551193 1_4:+54200630 Msa0170230:CDS
AAACGTTGGTGATCTTATGC+AGG 0.551789 1_4:-54202493 None:intergenic
CAATAACATGCAGTGTATGT+AGG 0.551922 1_4:-54197151 None:intergenic
CGTTTACAACAAGAGATCCA+TGG 0.554460 1_4:+54202511 Msa0170230:three_prime_UTR
TTGAATGTGATATCCTCGGC+TGG 0.555532 1_4:+54199556 Msa0170230:CDS
AGGTTGGAGCAATGCTGACA+AGG 0.556873 1_4:+54199023 Msa0170230:CDS
TGCTACTGGATTTATAGATA+AGG 0.557884 1_4:-54201572 None:intergenic
TTGGGAAGTATATGATGAGA+AGG 0.559387 1_4:+54198561 Msa0170230:CDS
ACTTGGAGACAAGGTAGGAC+TGG 0.559715 1_4:+54199375 Msa0170230:CDS
TACTTCATTCCCCATTTCCA+AGG 0.559892 1_4:-54199504 None:intergenic
AGAGCATCAGGAGTCGAGCT+AGG 0.561014 1_4:+54200709 Msa0170230:CDS
TTCTCATCATATACTTCCCA+AGG 0.561654 1_4:-54198559 None:intergenic
TGAGCGCTTGGATGATCCTG+AGG 0.562126 1_4:+54199617 Msa0170230:CDS
GTTGATGTTCCTCCAATCCA+TGG 0.562609 1_4:-54202528 None:intergenic
TTGCTACCCATATTCTACCT+AGG 0.562936 1_4:-54197726 None:intergenic
TTAATGTGCATACCTTCAGC+AGG 0.564087 1_4:-54198676 None:intergenic
GGATCTAGGTTTGATCCAGA+AGG 0.564228 1_4:+54200598 Msa0170230:CDS
CTGTTTCGCTTATTCCACCT+TGG 0.564355 1_4:+54198644 Msa0170230:CDS
ATGTTGAGAGCAATTCTGTA+AGG 0.564725 1_4:+54202700 Msa0170230:three_prime_UTR
CCTGAACCTGAATTAACTAT+GGG 0.564805 1_4:-54202639 None:intergenic
GCAAGGAAGAGTTCCCATCA+AGG 0.565323 1_4:+54202147 Msa0170230:three_prime_UTR
GTTTATATGGTGTCCTAAAG+AGG 0.569764 1_4:+54197839 Msa0170230:CDS
ACACTAAGTGGTGCATTCCA+AGG 0.571610 1_4:-54200682 None:intergenic
TGGCAATTAATTCCTGCTGA+AGG 0.571990 1_4:+54198664 Msa0170230:CDS
ACAAGAGATCCATGGATTGG+AGG 0.572001 1_4:+54202519 Msa0170230:three_prime_UTR
TTGCTTCTACCTTGGAAATG+GGG 0.574156 1_4:+54199495 Msa0170230:CDS
GACCTTGAATGTGATATCCT+CGG 0.577392 1_4:+54199552 Msa0170230:CDS
CTCGCATAAAGCAGATATTG+TGG 0.579056 1_4:+54199181 Msa0170230:CDS
CCAATGATGAGTTCCCATCA+AGG 0.579073 1_4:-54202065 None:intergenic
AAACTTGTGAAAGGGACATG+TGG 0.579526 1_4:+54197426 Msa0170230:five_prime_UTR
CTTTCTAAACCCATCATCAG+AGG 0.581105 1_4:-54202282 None:intergenic
TACATAGTCAAAGTCTACAT+TGG 0.582002 1_4:+54201990 Msa0170230:three_prime_UTR
AGCTTGCTATGGAAATTCTA+GGG 0.582029 1_4:+54202306 Msa0170230:three_prime_UTR
AAGGAGAATATGTAAGGCAA+TGG 0.584996 1_4:+54200617 Msa0170230:CDS
CAGATATTGTGGGGAAACGA+AGG 0.585311 1_4:+54199192 Msa0170230:CDS
GAGAACTTTGGGCTACAGGA+TGG 0.589010 1_4:+54199424 Msa0170230:CDS
GGATGATGGATCCACTCAGT+TGG 0.589489 1_4:-54200661 None:intergenic
TAGCGAAGTAGTATGCAAGT+TGG 0.590602 1_4:+54197482 Msa0170230:five_prime_UTR
TCCAAGAATAGGCAAAAGGT+TGG 0.591255 1_4:+54199084 Msa0170230:CDS
AGTGCTCTCTCATGAGTGAA+CGG 0.592898 1_4:-54199300 None:intergenic
ATCAGAGGAGGTTACATCCA+AGG 0.595406 1_4:-54202267 None:intergenic
TCACAGCCTGAAAGGGTGCA+AGG 0.598339 1_4:+54202130 Msa0170230:three_prime_UTR
AAGTAAATAATATACAATGT+TGG 0.599908 1_4:-54201692 None:intergenic
GGAAACGAAGGCAACAGTGT+TGG 0.600244 1_4:+54199204 Msa0170230:CDS
TGAATATTCAAAGAATGTAA+GGG 0.600838 1_4:-54202781 None:intergenic
CTAAAGAATAATAATAGAGG+AGG 0.600892 1_4:-54197357 None:intergenic
CTGAGATATACTGCCAGCCG+AGG 0.601742 1_4:-54199569 None:intergenic
GTAGTGTCCCTATAGATTGG+TGG 0.603110 1_4:+54202206 Msa0170230:three_prime_UTR
TTTGACGGATCAGCATTCCA+AGG 0.608296 1_4:-54199345 None:intergenic
TCAAGACTTGGAGACAAGGT+AGG 0.609400 1_4:+54199370 Msa0170230:CDS
TCAGCAGGAATTAATTGCCA+AGG 0.610860 1_4:-54198661 None:intergenic
TTTCATGCAGGGGCGACAGG+AGG 0.611889 1_4:+54201539 Msa0170230:intron
ATATGGTGTCCTAAAGAGGA+AGG 0.616143 1_4:+54197843 Msa0170230:CDS
TTAGGACACCATATAAACAC+AGG 0.616586 1_4:-54197834 None:intergenic
ATACTACTTCGCTATCTGGA+AGG 0.618316 1_4:-54197473 None:intergenic
TTGACGGATCAGCATTCCAA+GGG 0.619378 1_4:-54199344 None:intergenic
AACTTCAAGACTTGGAGACA+AGG 0.622090 1_4:+54199366 Msa0170230:CDS
CGCATAAAGCAGATATTGTG+GGG 0.626353 1_4:+54199183 Msa0170230:CDS
AGCACTACTTACCATAGAGA+TGG 0.626546 1_4:-54198037 None:intergenic
CAACATCAAAGAAAAGCTAG+TGG 0.627181 1_4:+54198489 Msa0170230:CDS
ATCTCAGGATGCTTACCAGA+CGG 0.628095 1_4:+54199585 Msa0170230:CDS
TCTAAACCCATCATCAGAGG+AGG 0.630056 1_4:-54202279 None:intergenic
TTCTCACTAGGCATAAGTCA+TGG 0.633959 1_4:+54201793 Msa0170230:three_prime_UTR
ATCAGTGAAAAGCTATAATG+GGG 0.635939 1_4:+54198522 Msa0170230:CDS
ATCCCTTCTAAACCAAACAA+TGG 0.637331 1_4:-54197754 None:intergenic
GTTCACAAGTGTTTATCACC+GGG 0.640346 1_4:-54202348 None:intergenic
TTAAATGTAATCATATATGT+CGG 0.641334 1_4:+54201905 Msa0170230:three_prime_UTR
ACGCGTTACTAGGACGAGCA+TGG 0.642349 1_4:+54198995 Msa0170230:CDS
GCAGGAATTAATTGCCAAGG+TGG 0.644364 1_4:-54198658 None:intergenic
AATGTAATCATATATGTCGG+TGG 0.647016 1_4:+54201908 Msa0170230:three_prime_UTR
GTGGAGAAGATCACATGTCA+AGG 0.648414 1_4:-54197063 None:intergenic
TTAGCTGAAATAGTAGCAGA+CGG 0.651586 1_4:-54200916 None:intergenic
AACTTGTGAAAGGGACATGT+GGG 0.652408 1_4:+54197427 Msa0170230:five_prime_UTR
TGGGAAGTATATGATGAGAA+GGG 0.652926 1_4:+54198562 Msa0170230:CDS
GATGCTCTGAGCACACTAAG+TGG 0.654212 1_4:-54200694 None:intergenic
TGGCAAGAATGCCAACTGAG+TGG 0.660213 1_4:+54200650 Msa0170230:CDS
GGATCTCTTGTTGTAAACGT+TGG 0.666461 1_4:-54202507 None:intergenic
ATTTCGGAGAGTTGAGTGTG+AGG 0.666895 1_4:+54199142 Msa0170230:CDS
CTCTCCGAAATGGAGATACG+GGG 0.691586 1_4:-54199130 None:intergenic
ATCCAGGAAGAGTTTCAAGG+TGG 0.698355 1_4:+54197874 Msa0170230:CDS
ATATGATTGAGTGTGTGTGA+AGG 0.699895 1_4:-54197109 None:intergenic
ATACGGGGATAACAGCGAGG+TGG 0.704873 1_4:-54199115 None:intergenic
GACGATAAATTATTCTCACT+AGG 0.709024 1_4:+54201781 Msa0170230:three_prime_UTR
TAGGACACCATATAAACACA+GGG 0.720737 1_4:-54197833 None:intergenic
GAGATACGGGGATAACAGCG+AGG 0.744456 1_4:-54199118 None:intergenic
ATTAGTGTATGATGATCACG+TGG 0.765451 1_4:-54197082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACTAAAGAATAATAATAG+AGG - chr1_4:54197363-54197382 None:intergenic 15.0%
!! GTTAAAAATACACAAAAAAT+TGG - chr1_4:54197395-54197414 None:intergenic 15.0%
!!! TTCATTTATAGTATAGTTTT+TGG + chr1_4:54198715-54198734 Msa0170230:intron 15.0%
!! TGAATAAATTATTGAATACA+GGG - chr1_4:54199695-54199714 None:intergenic 15.0%
!! TTGAATAAATTATTGAATAC+AGG - chr1_4:54199696-54199715 None:intergenic 15.0%
!! AAGTAAATAATATACAATGT+TGG - chr1_4:54201695-54201714 None:intergenic 15.0%
!! TTAAATGTAATCATATATGT+CGG + chr1_4:54201905-54201924 Msa0170230:three_prime_UTR 15.0%
!! ATAAGTATTAAGAATAAGAT+TGG - chr1_4:54202104-54202123 None:intergenic 15.0%
!!! CTTATCTAAGTTGAAAATAA+GGG - chr1_4:54197214-54197233 None:intergenic 20.0%
!!! TCTTATCTAAGTTGAAAATA+AGG - chr1_4:54197215-54197234 None:intergenic 20.0%
!!! TTTGGTTACACTTAATATTT+TGG + chr1_4:54198136-54198155 Msa0170230:intron 20.0%
!!! TTTTTCTATTAGTAACATAG+AGG + chr1_4:54198188-54198207 Msa0170230:intron 20.0%
!!! TAGATAATAGCTTTTATATC+TGG + chr1_4:54199871-54199890 Msa0170230:intron 20.0%
!! TAAAATTTCAAAGTACAAAC+TGG - chr1_4:54199998-54200017 None:intergenic 20.0%
!! GCTTATAACATAAATGAAAA+TGG - chr1_4:54200276-54200295 None:intergenic 20.0%
!!! TATAGGAAACAAGTTTTATT+AGG + chr1_4:54200474-54200493 Msa0170230:intron 20.0%
!! TCTATATCAATTATTGGATT+CGG - chr1_4:54200745-54200764 None:intergenic 20.0%
!! TCCAATAATTGATATAGATA+TGG + chr1_4:54200747-54200766 Msa0170230:CDS 20.0%
!!! ATCCTTAGGTTTATTTTTTT+AGG + chr1_4:54201356-54201375 Msa0170230:intron 20.0%
!!! TCCTTAGGTTTATTTTTTTA+GGG + chr1_4:54201357-54201376 Msa0170230:intron 20.0%
!! CAAGACTATCAAAATATTTA+AGG - chr1_4:54201733-54201752 None:intergenic 20.0%
!! GTATGTTATTAACTCAATAA+GGG - chr1_4:54202017-54202036 None:intergenic 20.0%
!! TGTATGTTATTAACTCAATA+AGG - chr1_4:54202018-54202037 None:intergenic 20.0%
!! AATTGTCATGAAATCAATAT+CGG + chr1_4:54202602-54202621 Msa0170230:three_prime_UTR 20.0%
!! TGAATATTCAAAGAATGTAA+GGG - chr1_4:54202784-54202803 None:intergenic 20.0%
!! ATGAATATTCAAAGAATGTA+AGG - chr1_4:54202785-54202804 None:intergenic 20.0%
! CCAAAATCTTATCAAAGAAA+AGG - chr1_4:54197180-54197199 None:intergenic 25.0%
!! CCTTTTCTTTGATAAGATTT+TGG + chr1_4:54197177-54197196 Msa0170230:five_prime_UTR 25.0%
! CTAAAGAATAATAATAGAGG+AGG - chr1_4:54197360-54197379 None:intergenic 25.0%
!!! CTATTTTTAGCAGTTATTAG+AGG + chr1_4:54197526-54197545 Msa0170230:five_prime_UTR 25.0%
!!! AAACCATTTTTGAACTTTTG+AGG + chr1_4:54197669-54197688 Msa0170230:five_prime_UTR 25.0%
!!! GATTTGATTTGATTCATGTT+TGG + chr1_4:54198118-54198137 Msa0170230:intron 25.0%
! ATGTTACTAATAGAAAAAGC+CGG - chr1_4:54198186-54198205 None:intergenic 25.0%
! TTATCAGTGAAAAGCTATAA+TGG + chr1_4:54198520-54198539 Msa0170230:CDS 25.0%
! TATCAGTGAAAAGCTATAAT+GGG + chr1_4:54198521-54198540 Msa0170230:CDS 25.0%
!!! TATAGTTTTTGGTTCTACAT+TGG + chr1_4:54198726-54198745 Msa0170230:intron 25.0%
!! AAAAGATGATACTTTCGTTT+TGG - chr1_4:54198842-54198861 None:intergenic 25.0%
! TTGCTGTATCATAATAACTA+TGG - chr1_4:54198879-54198898 None:intergenic 25.0%
! AAATGTTCAATAGAGGATTT+AGG + chr1_4:54198943-54198962 Msa0170230:CDS 25.0%
! TTGAAACTATAACTCTGATT+CGG - chr1_4:54199458-54199477 None:intergenic 25.0%
! ATAAATTATTGAATACAGGG+TGG - chr1_4:54199692-54199711 None:intergenic 25.0%
! CAAATTAGATATTTAACGAG+CGG - chr1_4:54199926-54199945 None:intergenic 25.0%
!!! TTGCTTTTAACACAGATTAT+TGG + chr1_4:54199943-54199962 Msa0170230:intron 25.0%
!!! TAAGTTGGTTTATTCAAACA+GGG - chr1_4:54200168-54200187 None:intergenic 25.0%
! TGATTAAGCGTTTATTCTAT+AGG - chr1_4:54200199-54200218 None:intergenic 25.0%
!!! GCTTTTTTCATAAACTATCT+TGG + chr1_4:54200294-54200313 Msa0170230:intron 25.0%
!! AATAAACAGATATCAGCTTT+TGG + chr1_4:54200329-54200348 Msa0170230:intron 25.0%
!!! GGTATTACTTTTTCGTATAT+AGG + chr1_4:54200457-54200476 Msa0170230:intron 25.0%
! ATTTACTCTTGTTAATTGTG+AGG - chr1_4:54200533-54200552 None:intergenic 25.0%
!! TCATTATTTGTCCAGATTTT+AGG + chr1_4:54200577-54200596 Msa0170230:intron 25.0%
! GCCATATCTATATCAATTAT+TGG - chr1_4:54200751-54200770 None:intergenic 25.0%
!!! AGTTACTTCTATTTTTCTCA+TGG - chr1_4:54201301-54201320 None:intergenic 25.0%
! TCCCTAAAAAAATAAACCTA+AGG - chr1_4:54201361-54201380 None:intergenic 25.0%
!! AAGAATTTTCATTTTCATGC+AGG + chr1_4:54201527-54201546 Msa0170230:intron 25.0%
!! AGAATTTTCATTTTCATGCA+GGG + chr1_4:54201528-54201547 Msa0170230:intron 25.0%
! TGGCTATATTCTCAATAAAA+TGG + chr1_4:54201645-54201664 Msa0170230:three_prime_UTR 25.0%
! ATATTTAAGGACTTCTCATT+CGG - chr1_4:54201720-54201739 None:intergenic 25.0%
!! CATTTTCGTATATGAAGTAT+CGG + chr1_4:54201964-54201983 Msa0170230:three_prime_UTR 25.0%
! TTGGCACATTATTATACAAA+AGG - chr1_4:54202173-54202192 None:intergenic 25.0%
! TCTGATAACAATTCCTTTAT+TGG + chr1_4:54202236-54202255 Msa0170230:three_prime_UTR 25.0%
!!! CTATATTTTTGGATAAAACC+CGG + chr1_4:54202330-54202349 Msa0170230:three_prime_UTR 25.0%
! TTGATAAGATGATTCTGTAT+TGG - chr1_4:54202822-54202841 None:intergenic 25.0%
CAAACTTGAGAACTAAGATA+AGG - chr1_4:54197279-54197298 None:intergenic 30.0%
AAAACTGATGCACTAAAAAC+TGG - chr1_4:54197621-54197640 None:intergenic 30.0%
TCACCTCAAAAGTTCAAAAA+TGG - chr1_4:54197675-54197694 None:intergenic 30.0%
! CAATAAAAAGTTTGAAGCCT+AGG + chr1_4:54197709-54197728 Msa0170230:five_prime_UTR 30.0%
! AACCATTGTTTGGTTTAGAA+GGG + chr1_4:54197752-54197771 Msa0170230:CDS 30.0%
TAAAATTGTCCTTCCTCTTT+AGG - chr1_4:54197855-54197874 None:intergenic 30.0%
GTAAAATGCTGGATTCTTAT+TGG + chr1_4:54198281-54198300 Msa0170230:intron 30.0%
GAACTGTAAAGAAACATATC+AGG - chr1_4:54198397-54198416 None:intergenic 30.0%
ACAATCATGGTACAAAATGT+TGG - chr1_4:54198436-54198455 None:intergenic 30.0%
AGGATCTGATAAAACAATCA+TGG - chr1_4:54198449-54198468 None:intergenic 30.0%
ATCAGTGAAAAGCTATAATG+GGG + chr1_4:54198522-54198541 Msa0170230:CDS 30.0%
AGTAAGTTAGTAGTTGTGTT+GGG - chr1_4:54198806-54198825 None:intergenic 30.0%
TAGTAAGTTAGTAGTTGTGT+TGG - chr1_4:54198807-54198826 None:intergenic 30.0%
!! ATGATACTTTCGTTTTGGAT+AGG - chr1_4:54198837-54198856 None:intergenic 30.0%
AGTCAAGAAATGTTCAATAG+AGG + chr1_4:54198936-54198955 Msa0170230:CDS 30.0%
! CAAGGCTTTAACAGAATTTA+TGG + chr1_4:54199041-54199060 Msa0170230:CDS 30.0%
!! TGTGAGGAAAGTTTTTCAAA+TGG + chr1_4:54199158-54199177 Msa0170230:CDS 30.0%
TCCAATCAACTGCATAAATT+TGG + chr1_4:54199833-54199852 Msa0170230:intron 30.0%
ACCAAATTTATGCAGTTGAT+TGG - chr1_4:54199837-54199856 None:intergenic 30.0%
CAACTATTATAGTCATGCTA+AGG - chr1_4:54200108-54200127 None:intergenic 30.0%
!! GTAAGTTGGTTTATTCAAAC+AGG - chr1_4:54200169-54200188 None:intergenic 30.0%
AAACTATCTTGGAGATCTTA+TGG + chr1_4:54200305-54200324 Msa0170230:intron 30.0%
AAGCAATTGTGAGATTGTTT+GGG - chr1_4:54200384-54200403 None:intergenic 30.0%
TAAGCAATTGTGAGATTGTT+TGG - chr1_4:54200385-54200404 None:intergenic 30.0%
!! GTTTTATTAGGCTTGTTTGT+TGG + chr1_4:54200486-54200505 Msa0170230:intron 30.0%
! GTTAATTGTGAGGATCTTTT+TGG - chr1_4:54200523-54200542 None:intergenic 30.0%
TCAAGCCATATTCAAGATAT+GGG + chr1_4:54200786-54200805 Msa0170230:CDS 30.0%
CATTTCCCATATCTTGAATA+TGG - chr1_4:54200794-54200813 None:intergenic 30.0%
CTAATAGGTAGTTCATTCTT+AGG - chr1_4:54200970-54200989 None:intergenic 30.0%
CTAAGAATGAACTACCTATT+AGG + chr1_4:54200968-54200987 Msa0170230:CDS 30.0%
! CATTTTGTTCTCTTCCTAAT+AGG - chr1_4:54200985-54201004 None:intergenic 30.0%
ACTATCTTTCACATGATTCA+CGG - chr1_4:54201040-54201059 None:intergenic 30.0%
TTGTGGAACTGAAAATGAAT+AGG - chr1_4:54201139-54201158 None:intergenic 30.0%
! CCATTTTAGATTTGAAGATG+AGG - chr1_4:54201169-54201188 None:intergenic 30.0%
CCTCATCTTCAAATCTAAAA+TGG + chr1_4:54201166-54201185 Msa0170230:intron 30.0%
ACCTAAGGATTAAATTGTCT+CGG - chr1_4:54201346-54201365 None:intergenic 30.0%
ATCACTGTGTTTCATAATGA+GGG + chr1_4:54201451-54201470 Msa0170230:intron 30.0%
!!! CACTCTTTTTTACACTTTGT+TGG + chr1_4:54201484-54201503 Msa0170230:intron 30.0%
! GAATTTTCATTTTCATGCAG+GGG + chr1_4:54201529-54201548 Msa0170230:intron 30.0%
TGCTACTGGATTTATAGATA+AGG - chr1_4:54201575-54201594 None:intergenic 30.0%
CACAGAAAACAGTTCATTTA+TGG - chr1_4:54201627-54201646 None:intergenic 30.0%
! CATAAATGAACTGTTTTCTG+TGG + chr1_4:54201625-54201644 Msa0170230:exon 30.0%
!! TCGTCTACTAGATTAGTTTA+TGG - chr1_4:54201766-54201785 None:intergenic 30.0%
GACGATAAATTATTCTCACT+AGG + chr1_4:54201781-54201800 Msa0170230:three_prime_UTR 30.0%
ATATGCATCAAGTTCCAAAA+AGG - chr1_4:54201827-54201846 None:intergenic 30.0%
AATGTAATCATATATGTCGG+TGG + chr1_4:54201908-54201927 Msa0170230:three_prime_UTR 30.0%
TACATAGTCAAAGTCTACAT+TGG + chr1_4:54201990-54202009 Msa0170230:three_prime_UTR 30.0%
!! ATTTTATTTCACAGCCTGAA+AGG + chr1_4:54202122-54202141 Msa0170230:three_prime_UTR 30.0%
!! TTTTATTTCACAGCCTGAAA+GGG + chr1_4:54202123-54202142 Msa0170230:three_prime_UTR 30.0%
ATTATACAAAAGGCCTTGAT+GGG - chr1_4:54202163-54202182 None:intergenic 30.0%
TATTATACAAAAGGCCTTGA+TGG - chr1_4:54202164-54202183 None:intergenic 30.0%
AGAAAATCCACCAATCTATA+GGG - chr1_4:54202216-54202235 None:intergenic 30.0%
AAGAAAATCCACCAATCTAT+AGG - chr1_4:54202217-54202236 None:intergenic 30.0%
!!! AATTCTAGGGCCTATATTTT+TGG + chr1_4:54202319-54202338 Msa0170230:three_prime_UTR 30.0%
!! CGGGTTTTATCCAAAAATAT+AGG - chr1_4:54202332-54202351 None:intergenic 30.0%
!! TCATTTGTTATAAGCTGCAA+AGG + chr1_4:54202374-54202393 Msa0170230:intron 30.0%
AGTTCTTCATCAGAATCAAT+GGG - chr1_4:54202553-54202572 None:intergenic 30.0%
AAGTTCTTCATCAGAATCAA+TGG - chr1_4:54202554-54202573 None:intergenic 30.0%
ATTAGTGTATGATGATCACG+TGG - chr1_4:54197085-54197104 None:intergenic 35.0%
ATATGATTGAGTGTGTGTGA+AGG - chr1_4:54197112-54197131 None:intergenic 35.0%
TGTATGTAGGAATGGAAGAT+AGG - chr1_4:54197141-54197160 None:intergenic 35.0%
CAATAACATGCAGTGTATGT+AGG - chr1_4:54197154-54197173 None:intergenic 35.0%
ATGCCTTCAAACTTGTGAAA+GGG + chr1_4:54197418-54197437 Msa0170230:five_prime_UTR 35.0%
TAAAAACTGGCTACAAAGGT+TGG - chr1_4:54197608-54197627 None:intergenic 35.0%
! TTTGAAGCCTAGGTAGAATA+TGG + chr1_4:54197719-54197738 Msa0170230:exon 35.0%
TTGAAGCCTAGGTAGAATAT+GGG + chr1_4:54197720-54197739 Msa0170230:exon 35.0%
GTAGCAATAGAACCATTGTT+TGG + chr1_4:54197742-54197761 Msa0170230:CDS 35.0%
! GAACCATTGTTTGGTTTAGA+AGG + chr1_4:54197751-54197770 Msa0170230:CDS 35.0%
ATCCCTTCTAAACCAAACAA+TGG - chr1_4:54197757-54197776 None:intergenic 35.0%
TAGAAGGGATCTTAGAATTG+AGG + chr1_4:54197767-54197786 Msa0170230:CDS 35.0%
CTGTATTCCCTGTGTTTATA+TGG + chr1_4:54197826-54197845 Msa0170230:CDS 35.0%
TAGGACACCATATAAACACA+GGG - chr1_4:54197836-54197855 None:intergenic 35.0%
TTAGGACACCATATAAACAC+AGG - chr1_4:54197837-54197856 None:intergenic 35.0%
GTTTATATGGTGTCCTAAAG+AGG + chr1_4:54197839-54197858 Msa0170230:CDS 35.0%
TTTATCCAGGAAGAGTTTCA+AGG + chr1_4:54197871-54197890 Msa0170230:CDS 35.0%
GTTGTGTTTAACCATCTCTA+TGG + chr1_4:54198026-54198045 Msa0170230:CDS 35.0%
!! TGGTAAGTAGTGCTGTTTAT+AGG + chr1_4:54198046-54198065 Msa0170230:intron 35.0%
CAAAAGTTGAAGAATCAAGC+CGG + chr1_4:54198164-54198183 Msa0170230:intron 35.0%
GTTATGTGTGGCAAAATGAA+GGG - chr1_4:54198260-54198279 None:intergenic 35.0%
AGTTATGTGTGGCAAAATGA+AGG - chr1_4:54198261-54198280 None:intergenic 35.0%
! CAGCATTTTACAGTTATGTG+TGG - chr1_4:54198272-54198291 None:intergenic 35.0%
CACACATAACTGTAAAATGC+TGG + chr1_4:54198270-54198289 Msa0170230:intron 35.0%
GGATTCTTATTGGATGTAAC+TGG + chr1_4:54198291-54198310 Msa0170230:intron 35.0%
TTTATCAGATCCTGTTTCAC+TGG + chr1_4:54198456-54198475 Msa0170230:intron 35.0%
!! CTAGCTTTTCTTTGATGTTG+TGG - chr1_4:54198489-54198508 None:intergenic 35.0%
CAACATCAAAGAAAAGCTAG+TGG + chr1_4:54198489-54198508 Msa0170230:CDS 35.0%
AAAGAAAAGCTAGTGGAACT+TGG + chr1_4:54198496-54198515 Msa0170230:CDS 35.0%
TTCTCATCATATACTTCCCA+AGG - chr1_4:54198562-54198581 None:intergenic 35.0%
! TTGGGAAGTATATGATGAGA+AGG + chr1_4:54198561-54198580 Msa0170230:CDS 35.0%
! TGGGAAGTATATGATGAGAA+GGG + chr1_4:54198562-54198581 Msa0170230:CDS 35.0%
! TTACAACCTTCGATCCTTTT+TGG + chr1_4:54198593-54198612 Msa0170230:CDS 35.0%
!! TTCTACATTGGTAGCTTTGT+TGG + chr1_4:54198738-54198757 Msa0170230:intron 35.0%
TACTTCACTACTCCAAGAAT+AGG + chr1_4:54199073-54199092 Msa0170230:CDS 35.0%
TCGCATAAAGCAGATATTGT+GGG + chr1_4:54199182-54199201 Msa0170230:CDS 35.0%
TCATTCCTGCATCAACTAAA+GGG - chr1_4:54199404-54199423 None:intergenic 35.0%
! TGAAAATGTTGCTTCTACCT+TGG + chr1_4:54199487-54199506 Msa0170230:CDS 35.0%
! AATGGGGAATGAAGTATTTC+TGG + chr1_4:54199511-54199530 Msa0170230:CDS 35.0%
! ATGGGGAATGAAGTATTTCT+GGG + chr1_4:54199512-54199531 Msa0170230:CDS 35.0%
AAAAATTGGCACATGAGGAT+GGG - chr1_4:54199794-54199813 None:intergenic 35.0%
ATCTCAAAAATTGGCACATG+AGG - chr1_4:54199799-54199818 None:intergenic 35.0%
!!! ATGTGCCAATTTTTGAGATC+TGG + chr1_4:54199800-54199819 Msa0170230:intron 35.0%
!!! TGTGCCAATTTTTGAGATCT+GGG + chr1_4:54199801-54199820 Msa0170230:intron 35.0%
GCGGTGAAGTTTAATATGAA+AGG - chr1_4:54199907-54199926 None:intergenic 35.0%
! TGATCTACAGAGCTTTTGAA+AGG - chr1_4:54200071-54200090 None:intergenic 35.0%
CTATAGGAGCTTAAGTAAGT+TGG - chr1_4:54200183-54200202 None:intergenic 35.0%
AGATTGTTTGGGAGAGATTT+CGG - chr1_4:54200373-54200392 None:intergenic 35.0%
AGTAATACCGATCTCACTTA+GGG - chr1_4:54200446-54200465 None:intergenic 35.0%
AAGTAATACCGATCTCACTT+AGG - chr1_4:54200447-54200466 None:intergenic 35.0%
! TACCGTGACTTCTCTAATTT+TGG + chr1_4:54200552-54200571 Msa0170230:intron 35.0%
CACCAAAATTAGAGAAGTCA+CGG - chr1_4:54200557-54200576 None:intergenic 35.0%
!!! TTGTCCAGATTTTAGGATCT+AGG + chr1_4:54200584-54200603 Msa0170230:intron 35.0%
CAAACCTAGATCCTAAAATC+TGG - chr1_4:54200591-54200610 None:intergenic 35.0%
ATCCAGAAGGAGAATATGTA+AGG + chr1_4:54200611-54200630 Msa0170230:CDS 35.0%
AAGGAGAATATGTAAGGCAA+TGG + chr1_4:54200617-54200636 Msa0170230:CDS 35.0%
CTCAAGCCATATTCAAGATA+TGG + chr1_4:54200785-54200804 Msa0170230:CDS 35.0%
TTAGCTGAAATAGTAGCAGA+CGG - chr1_4:54200919-54200938 None:intergenic 35.0%
TGAAGAGAAGAGAAAGAACA+TGG + chr1_4:54201008-54201027 Msa0170230:CDS 35.0%
! CTTCAAATCTAAAATGGCCA+TGG + chr1_4:54201172-54201191 Msa0170230:intron 35.0%
!! GTCTCGGTTTATTTTCTTCA+TGG - chr1_4:54201330-54201349 None:intergenic 35.0%
ACCGAGACAATTTAATCCTT+AGG + chr1_4:54201342-54201361 Msa0170230:intron 35.0%
!!! GAAGTTGCGTTATTTTTCTC+AGG + chr1_4:54201384-54201403 Msa0170230:intron 35.0%
! AAGAGCGAAGACTCATTTTA+GGG - chr1_4:54201410-54201429 None:intergenic 35.0%
! AAAGAGCGAAGACTCATTTT+AGG - chr1_4:54201411-54201430 None:intergenic 35.0%
TGATGTAGAAAGTCCTATGA+TGG - chr1_4:54201435-54201454 None:intergenic 35.0%
CATCACTGTGTTTCATAATG+AGG + chr1_4:54201450-54201469 Msa0170230:intron 35.0%
! TCATGGTGCTTTTACCTTTT+TGG + chr1_4:54201810-54201829 Msa0170230:three_prime_UTR 35.0%
TTGGAACTTGATGCATATGA+AGG + chr1_4:54201829-54201848 Msa0170230:three_prime_UTR 35.0%
GACATGTATACATGCTAGTA+AGG + chr1_4:54201872-54201891 Msa0170230:three_prime_UTR 35.0%
ATTCCTTTATTGAGCCTTGA+TGG + chr1_4:54202051-54202070 Msa0170230:three_prime_UTR 35.0%
TTCCTTTATTGAGCCTTGAT+GGG + chr1_4:54202052-54202071 Msa0170230:three_prime_UTR 35.0%
! CACTACTTTGAAAGAAGTCT+TGG - chr1_4:54202192-54202211 None:intergenic 35.0%
AAAGTAGTGTCCCTATAGAT+TGG + chr1_4:54202203-54202222 Msa0170230:three_prime_UTR 35.0%
!! GTTTAGAAAGAAGCTTGCTA+TGG + chr1_4:54202295-54202314 Msa0170230:three_prime_UTR 35.0%
!! AAGCTTGCTATGGAAATTCT+AGG + chr1_4:54202305-54202324 Msa0170230:three_prime_UTR 35.0%
!! AGCTTGCTATGGAAATTCTA+GGG + chr1_4:54202306-54202325 Msa0170230:three_prime_UTR 35.0%
TGTTCACAAGTGTTTATCAC+CGG - chr1_4:54202352-54202371 None:intergenic 35.0%
GAAGTTCCCATAGTTAATTC+AGG + chr1_4:54202633-54202652 Msa0170230:three_prime_UTR 35.0%
CCTGAACCTGAATTAACTAT+GGG - chr1_4:54202642-54202661 None:intergenic 35.0%
! CCATAGTTAATTCAGGTTCA+GGG + chr1_4:54202640-54202659 Msa0170230:three_prime_UTR 35.0%
ACAGAATTGCTCTCAACATA+TGG - chr1_4:54202699-54202718 None:intergenic 35.0%
ATGTTGAGAGCAATTCTGTA+AGG + chr1_4:54202700-54202719 Msa0170230:three_prime_UTR 35.0%
TCAAAGAATGTAAGGGCTTT+AGG - chr1_4:54202777-54202796 None:intergenic 35.0%
AGATCACATGTCAAGGAGAA+AGG - chr1_4:54197059-54197078 None:intergenic 40.0%
ACATGCAGTGTATGTAGGAA+TGG - chr1_4:54197149-54197168 None:intergenic 40.0%
GATGCCTTCAAACTTGTGAA+AGG + chr1_4:54197417-54197436 Msa0170230:five_prime_UTR 40.0%
TGTCCCTTTCACAAGTTTGA+AGG - chr1_4:54197424-54197443 None:intergenic 40.0%
AAACTTGTGAAAGGGACATG+TGG + chr1_4:54197426-54197445 Msa0170230:five_prime_UTR 40.0%
AACTTGTGAAAGGGACATGT+GGG + chr1_4:54197427-54197446 Msa0170230:five_prime_UTR 40.0%
ATACTACTTCGCTATCTGGA+AGG - chr1_4:54197476-54197495 None:intergenic 40.0%
TTGCATACTACTTCGCTATC+TGG - chr1_4:54197480-54197499 None:intergenic 40.0%
TAGCGAAGTAGTATGCAAGT+TGG + chr1_4:54197482-54197501 Msa0170230:five_prime_UTR 40.0%
GCACTAAAAACTGGCTACAA+AGG - chr1_4:54197612-54197631 None:intergenic 40.0%
TTGCTACCCATATTCTACCT+AGG - chr1_4:54197729-54197748 None:intergenic 40.0%
ATATGGTGTCCTAAAGAGGA+AGG + chr1_4:54197843-54197862 Msa0170230:CDS 40.0%
! GAGGAAGGACAATTTTATCC+AGG + chr1_4:54197858-54197877 Msa0170230:CDS 40.0%
! GAAGCAGTCTTTAGTTCACT+TGG + chr1_4:54197902-54197921 Msa0170230:CDS 40.0%
GATCAGTCCTTGAAATCACT+TGG + chr1_4:54197924-54197943 Msa0170230:CDS 40.0%
TCTCGAACCAAGTGATTTCA+AGG - chr1_4:54197934-54197953 None:intergenic 40.0%
AGCACTACTTACCATAGAGA+TGG - chr1_4:54198040-54198059 None:intergenic 40.0%
! CGGCTTGATTCTTCAACTTT+TGG - chr1_4:54198166-54198185 None:intergenic 40.0%
GCAAAATGAAGGGTTCTCAT+CGG - chr1_4:54198250-54198269 None:intergenic 40.0%
TCCAGTAACGTTAAGCGAAA+GGG - chr1_4:54198338-54198357 None:intergenic 40.0%
TTCCAGTAACGTTAAGCGAA+AGG - chr1_4:54198339-54198358 None:intergenic 40.0%
TCAGCAGGAATTAATTGCCA+AGG - chr1_4:54198664-54198683 None:intergenic 40.0%
TGGCAATTAATTCCTGCTGA+AGG + chr1_4:54198664-54198683 Msa0170230:CDS 40.0%
TTAATGTGCATACCTTCAGC+AGG - chr1_4:54198679-54198698 None:intergenic 40.0%
! CTGAAGGTATGCACATTAAC+AGG + chr1_4:54198680-54198699 Msa0170230:intron 40.0%
CCTCTGTCGTAAAACTTCTT+TGG - chr1_4:54198777-54198796 None:intergenic 40.0%
! CCAAAGAAGTTTTACGACAG+AGG + chr1_4:54198774-54198793 Msa0170230:intron 40.0%
! AGAAGTTTTACGACAGAGGT+CGG + chr1_4:54198778-54198797 Msa0170230:intron 40.0%
TCTCTTCTGCTGTGTATTAC+AGG + chr1_4:54198910-54198929 Msa0170230:intron 40.0%
CTACTCCAAGAATAGGCAAA+AGG + chr1_4:54199080-54199099 Msa0170230:CDS 40.0%
TCCAAGAATAGGCAAAAGGT+TGG + chr1_4:54199084-54199103 Msa0170230:CDS 40.0%
! ACCAACCTTTTGCCTATTCT+TGG - chr1_4:54199088-54199107 None:intergenic 40.0%
AAGAATAGGCAAAAGGTTGG+TGG + chr1_4:54199087-54199106 Msa0170230:CDS 40.0%
TTATCCCCGTATCTCCATTT+CGG + chr1_4:54199126-54199145 Msa0170230:CDS 40.0%
AACTCTCCGAAATGGAGATA+CGG - chr1_4:54199135-54199154 None:intergenic 40.0%
CTCGCATAAAGCAGATATTG+TGG + chr1_4:54199181-54199200 Msa0170230:CDS 40.0%
CGCATAAAGCAGATATTGTG+GGG + chr1_4:54199183-54199202 Msa0170230:CDS 40.0%
! GCTCTTTTCCTTAGAGCAAT+TGG + chr1_4:54199240-54199259 Msa0170230:CDS 40.0%
CTCTTAGTCCAATTGCTCTA+AGG - chr1_4:54199251-54199270 None:intergenic 40.0%
!!! GACACTTGAGTTTTTTCCCT+TGG + chr1_4:54199328-54199347 Msa0170230:CDS 40.0%
ATCCGTCAAACTTCAAGACT+TGG + chr1_4:54199358-54199377 Msa0170230:CDS 40.0%
CTCCAAGTCTTGAAGTTTGA+CGG - chr1_4:54199363-54199382 None:intergenic 40.0%
AACTTCAAGACTTGGAGACA+AGG + chr1_4:54199366-54199385 Msa0170230:CDS 40.0%
CTCATTCCTGCATCAACTAA+AGG - chr1_4:54199405-54199424 None:intergenic 40.0%
ATGCAGGAATGAGAGAACTT+TGG + chr1_4:54199412-54199431 Msa0170230:CDS 40.0%
TGCAGGAATGAGAGAACTTT+GGG + chr1_4:54199413-54199432 Msa0170230:CDS 40.0%
! TGTTGCTTCTACCTTGGAAA+TGG + chr1_4:54199493-54199512 Msa0170230:CDS 40.0%
GTTGCTTCTACCTTGGAAAT+GGG + chr1_4:54199494-54199513 Msa0170230:CDS 40.0%
TTGCTTCTACCTTGGAAATG+GGG + chr1_4:54199495-54199514 Msa0170230:CDS 40.0%
TACTTCATTCCCCATTTCCA+AGG - chr1_4:54199507-54199526 None:intergenic 40.0%
GACCTTGAATGTGATATCCT+CGG + chr1_4:54199552-54199571 Msa0170230:CDS 40.0%
AGAAAAACGTGACAAACCTC+AGG - chr1_4:54199636-54199655 None:intergenic 40.0%
CAGAATGTGATGTGTGATAC+AGG - chr1_4:54199724-54199743 None:intergenic 40.0%
CAAAAATTGGCACATGAGGA+TGG - chr1_4:54199795-54199814 None:intergenic 40.0%
ACCACCCAGATCTCAAAAAT+TGG - chr1_4:54199808-54199827 None:intergenic 40.0%
AAACAGTCCCTAAGTGAGAT+CGG + chr1_4:54200436-54200455 Msa0170230:intron 40.0%
TGCCTTACATATTCTCCTTC+TGG - chr1_4:54200616-54200635 None:intergenic 40.0%
TCTTGAATATGGCTTGAGTC+AGG - chr1_4:54200783-54200802 None:intergenic 40.0%
TCCAAAAGTTGTCCTCCTTA+AGG + chr1_4:54200885-54200904 Msa0170230:CDS 40.0%
! TCCTTAAGGAGGACAACTTT+TGG - chr1_4:54200889-54200908 None:intergenic 40.0%
TTCTTAGGATCCTGAAATGC+TGG - chr1_4:54200955-54200974 None:intergenic 40.0%
! AGAGTCTCACAGTTTTTCTC+AGG - chr1_4:54201271-54201290 None:intergenic 40.0%
TCTTCGCTCTTTACCATCAT+AGG + chr1_4:54201419-54201438 Msa0170230:intron 40.0%
CAGTGCTCATGGAAAGAAAA+TGG + chr1_4:54201599-54201618 Msa0170230:CDS 40.0%
TTCTCACTAGGCATAAGTCA+TGG + chr1_4:54201793-54201812 Msa0170230:three_prime_UTR 40.0%
TTCCCATCAAGGCTCAATAA+AGG - chr1_4:54202057-54202076 None:intergenic 40.0%
CAAGGTTGTTGCTCCAATAA+AGG - chr1_4:54202252-54202271 None:intergenic 40.0%
CTTTATTGGAGCAACAACCT+TGG + chr1_4:54202250-54202269 Msa0170230:three_prime_UTR 40.0%
ATGTAACCTCCTCTGATGAT+GGG + chr1_4:54202273-54202292 Msa0170230:three_prime_UTR 40.0%
CTTTCTAAACCCATCATCAG+AGG - chr1_4:54202285-54202304 None:intergenic 40.0%
GTTCACAAGTGTTTATCACC+GGG - chr1_4:54202351-54202370 None:intergenic 40.0%
!! AAACGTTGGTGATCTTATGC+AGG - chr1_4:54202496-54202515 None:intergenic 40.0%
! GGATCTCTTGTTGTAAACGT+TGG - chr1_4:54202510-54202529 None:intergenic 40.0%
CGTTTACAACAAGAGATCCA+TGG + chr1_4:54202511-54202530 Msa0170230:three_prime_UTR 40.0%
ACAACAAGAGATCCATGGAT+TGG + chr1_4:54202516-54202535 Msa0170230:three_prime_UTR 40.0%
GAACTTGAAGACCACTAATC+TGG + chr1_4:54202568-54202587 Msa0170230:three_prime_UTR 40.0%
CTTCTACAAGACCAGATTAG+TGG - chr1_4:54202582-54202601 None:intergenic 40.0%
! CCCATAGTTAATTCAGGTTC+AGG + chr1_4:54202639-54202658 Msa0170230:three_prime_UTR 40.0%
CCCTGAACCTGAATTAACTA+TGG - chr1_4:54202643-54202662 None:intergenic 40.0%
AGCAATTCTGTAAGGTGAGA+AGG + chr1_4:54202708-54202727 Msa0170230:three_prime_UTR 40.0%
GAGCTATACTCAGAAGCTTT+AGG - chr1_4:54202741-54202760 None:intergenic 40.0%
GTGGAGAAGATCACATGTCA+AGG - chr1_4:54197066-54197085 None:intergenic 45.0%
ATCCAGGAAGAGTTTCAAGG+TGG + chr1_4:54197874-54197893 Msa0170230:CDS 45.0%
GAGTACTCTCAATGCTCTCT+TGG + chr1_4:54197974-54197993 Msa0170230:CDS 45.0%
CCAGTAACGTTAAGCGAAAG+GGG - chr1_4:54198337-54198356 None:intergenic 45.0%
GGATCTGTTGTATGAGCCTT+GGG + chr1_4:54198543-54198562 Msa0170230:CDS 45.0%
TCTCTGCCAAAAAGGATCGA+AGG - chr1_4:54198602-54198621 None:intergenic 45.0%
TGCAAGCATCTCTGCCAAAA+AGG - chr1_4:54198610-54198629 None:intergenic 45.0%
GAGATGCTTGCACAAGCAAA+TGG + chr1_4:54198618-54198637 Msa0170230:CDS 45.0%
CAAGGTGGAATAAGCGAAAC+AGG - chr1_4:54198646-54198665 None:intergenic 45.0%
CTGTTTCGCTTATTCCACCT+TGG + chr1_4:54198644-54198663 Msa0170230:CDS 45.0%
GCAGGAATTAATTGCCAAGG+TGG - chr1_4:54198661-54198680 None:intergenic 45.0%
AAACCAAGCAACGCGTTACT+AGG + chr1_4:54198985-54199004 Msa0170230:CDS 45.0%
ACTCTCCGAAATGGAGATAC+GGG - chr1_4:54199134-54199153 None:intergenic 45.0%
TCACACTCAACTCTCCGAAA+TGG - chr1_4:54199143-54199162 None:intergenic 45.0%
ATTTCGGAGAGTTGAGTGTG+AGG + chr1_4:54199142-54199161 Msa0170230:CDS 45.0%
CAGATATTGTGGGGAAACGA+AGG + chr1_4:54199192-54199211 Msa0170230:CDS 45.0%
AGTGCTCTCTCATGAGTGAA+CGG - chr1_4:54199303-54199322 None:intergenic 45.0%
!! ACTCATGAGAGAGCACTTCT+TGG + chr1_4:54199306-54199325 Msa0170230:CDS 45.0%
! TTGACGGATCAGCATTCCAA+GGG - chr1_4:54199347-54199366 None:intergenic 45.0%
! TTTGACGGATCAGCATTCCA+AGG - chr1_4:54199348-54199367 None:intergenic 45.0%
TCAAGACTTGGAGACAAGGT+AGG + chr1_4:54199370-54199389 Msa0170230:CDS 45.0%
ATGAGAGAACTTTGGGCTAC+AGG + chr1_4:54199420-54199439 Msa0170230:CDS 45.0%
!!! GTATTTCTGGGACACGCTTT+TGG + chr1_4:54199524-54199543 Msa0170230:CDS 45.0%
AGCCGAGGATATCACATTCA+AGG - chr1_4:54199557-54199576 None:intergenic 45.0%
TTGAATGTGATATCCTCGGC+TGG + chr1_4:54199556-54199575 Msa0170230:CDS 45.0%
ATCTCAGGATGCTTACCAGA+CGG + chr1_4:54199585-54199604 Msa0170230:CDS 45.0%
!!! GCCAATTTTTGAGATCTGGG+TGG + chr1_4:54199804-54199823 Msa0170230:intron 45.0%
CACTTAGGGACTGTTTGGAT+TGG - chr1_4:54200432-54200451 None:intergenic 45.0%
GATCTCACTTAGGGACTGTT+TGG - chr1_4:54200437-54200456 None:intergenic 45.0%
GGATCTAGGTTTGATCCAGA+AGG + chr1_4:54200598-54200617 Msa0170230:CDS 45.0%
ACACTAAGTGGTGCATTCCA+AGG - chr1_4:54200685-54200704 None:intergenic 45.0%
CAAGCAGCATCAAAAGCTTC+TGG + chr1_4:54200814-54200833 Msa0170230:CDS 45.0%
!! ACGGAGCTTTTTCCTTAAGG+AGG - chr1_4:54200900-54200919 None:intergenic 45.0%
!! CAGACGGAGCTTTTTCCTTA+AGG - chr1_4:54200903-54200922 None:intergenic 45.0%
!! TCAGAAAGTGCCAGCATTTC+AGG + chr1_4:54200942-54200961 Msa0170230:CDS 45.0%
CTGTAGAGCAAGTGTCTTCA+TGG - chr1_4:54201080-54201099 None:intergenic 45.0%
GAAGATGAGGAACACTGTTG+TGG - chr1_4:54201156-54201175 None:intergenic 45.0%
ATGTCAGTCTGTTCTTGCCA+TGG - chr1_4:54201192-54201211 None:intergenic 45.0%
ATGGCAAGAACAGACTGACA+TGG + chr1_4:54201191-54201210 Msa0170230:intron 45.0%
CCAATGATGAGTTCCCATCA+AGG - chr1_4:54202068-54202087 None:intergenic 45.0%
CCTTGATGGGAACTCATCAT+TGG + chr1_4:54202065-54202084 Msa0170230:three_prime_UTR 45.0%
GTAGTGTCCCTATAGATTGG+TGG + chr1_4:54202206-54202225 Msa0170230:three_prime_UTR 45.0%
ATCAGAGGAGGTTACATCCA+AGG - chr1_4:54202270-54202289 None:intergenic 45.0%
GATGTAACCTCCTCTGATGA+TGG + chr1_4:54202272-54202291 Msa0170230:three_prime_UTR 45.0%
TCTAAACCCATCATCAGAGG+AGG - chr1_4:54202282-54202301 None:intergenic 45.0%
!! ACAAGAGATCCATGGATTGG+AGG + chr1_4:54202519-54202538 Msa0170230:three_prime_UTR 45.0%
GTTGATGTTCCTCCAATCCA+TGG - chr1_4:54202531-54202550 None:intergenic 45.0%
CTGTAAGGTGAGAAGGATCA+AGG + chr1_4:54202715-54202734 Msa0170230:three_prime_UTR 45.0%
!!! CATGTGGGCTGAGTTGGTTT+TGG + chr1_4:54197442-54197461 Msa0170230:five_prime_UTR 50.0%
CACCACCTTGAAACTCTTCC+TGG - chr1_4:54197879-54197898 None:intergenic 50.0%
CAGGAAGAGTTTCAAGGTGG+TGG + chr1_4:54197877-54197896 Msa0170230:CDS 50.0%
CCCCTTTCGCTTAACGTTAC+TGG + chr1_4:54198334-54198353 Msa0170230:intron 50.0%
TGGTCTCGAACCAGTGAAAC+AGG - chr1_4:54198469-54198488 None:intergenic 50.0%
GGGATCTGTTGTATGAGCCT+TGG + chr1_4:54198542-54198561 Msa0170230:CDS 50.0%
TTGTCAGCATTGCTCCAACC+TGG - chr1_4:54199024-54199043 None:intergenic 50.0%
AGGTTGGAGCAATGCTGACA+AGG + chr1_4:54199023-54199042 Msa0170230:CDS 50.0%
CTCTCCGAAATGGAGATACG+GGG - chr1_4:54199133-54199152 None:intergenic 50.0%
GGAAACGAAGGCAACAGTGT+TGG + chr1_4:54199204-54199223 Msa0170230:CDS 50.0%
ACTTGGAGACAAGGTAGGAC+TGG + chr1_4:54199375-54199394 Msa0170230:CDS 50.0%
! GGCTACCCTTTAGTTGATGC+AGG + chr1_4:54199396-54199415 Msa0170230:CDS 50.0%
GAGAACTTTGGGCTACAGGA+TGG + chr1_4:54199424-54199443 Msa0170230:CDS 50.0%
CTTAGATGCATTTCCCTCGC+AGG + chr1_4:54200142-54200161 Msa0170230:intron 50.0%
TATTCAAACAGGGCCTGCGA+GGG - chr1_4:54200158-54200177 None:intergenic 50.0%
TTATTCAAACAGGGCCTGCG+AGG - chr1_4:54200159-54200178 None:intergenic 50.0%
AAGGCAATGGCTACCTGAGT+TGG + chr1_4:54200630-54200649 Msa0170230:CDS 50.0%
GTTGGCATTCTTGCCAACTC+AGG - chr1_4:54200646-54200665 None:intergenic 50.0%
TGGCAAGAATGCCAACTGAG+TGG + chr1_4:54200650-54200669 Msa0170230:CDS 50.0%
!! GGATGATGGATCCACTCAGT+TGG - chr1_4:54200664-54200683 None:intergenic 50.0%
CTGAGTGGATCCATCATCCT+TGG + chr1_4:54200665-54200684 Msa0170230:CDS 50.0%
GTGGTGCATTCCAAGGATGA+TGG - chr1_4:54200678-54200697 None:intergenic 50.0%
! GATGCTCTGAGCACACTAAG+TGG - chr1_4:54200697-54200716 None:intergenic 50.0%
! CTTAGTGTGCTCAGAGCATC+AGG + chr1_4:54200697-54200716 Msa0170230:CDS 50.0%
! GGCTTGAGTCAGGTTTTCTC+TGG - chr1_4:54200773-54200792 None:intergenic 50.0%
!! AAGCTTCTGGCTCTGAAGCA+AGG + chr1_4:54200827-54200846 Msa0170230:CDS 50.0%
!! AGCTTCTGGCTCTGAAGCAA+GGG + chr1_4:54200828-54200847 Msa0170230:CDS 50.0%
ACTGACATGGAGCAAAGCTC+AGG + chr1_4:54201204-54201223 Msa0170230:intron 50.0%
CTGACATGGAGCAAAGCTCA+GGG + chr1_4:54201205-54201224 Msa0170230:intron 50.0%
GAGCAAAGCTCAGGGAAAGA+TGG + chr1_4:54201213-54201232 Msa0170230:intron 50.0%
ACTCTTCCTTGCACCCTTTC+AGG - chr1_4:54202139-54202158 None:intergenic 50.0%
GCAAGGAAGAGTTCCCATCA+AGG + chr1_4:54202147-54202166 Msa0170230:three_prime_UTR 50.0%
! AATTCAGGTTCAGGGCATGC+AGG + chr1_4:54202648-54202667 Msa0170230:three_prime_UTR 50.0%
! AAGGGACATGTGGGCTGAGT+TGG + chr1_4:54197436-54197455 Msa0170230:five_prime_UTR 55.0%
AGCACTAGCTGCTGCTGCTA+GGG + chr1_4:54197797-54197816 Msa0170230:CDS 55.0%
CGTCCTAGTAACGCGTTGCT+TGG - chr1_4:54198991-54199010 None:intergenic 55.0%
ACGCGTTACTAGGACGAGCA+TGG + chr1_4:54198995-54199014 Msa0170230:CDS 55.0%
ATACGGGGATAACAGCGAGG+TGG - chr1_4:54199118-54199137 None:intergenic 55.0%
GAGATACGGGGATAACAGCG+AGG - chr1_4:54199121-54199140 None:intergenic 55.0%
CTGAGATATACTGCCAGCCG+AGG - chr1_4:54199572-54199591 None:intergenic 55.0%
CTCGGCTGGCAGTATATCTC+AGG + chr1_4:54199570-54199589 Msa0170230:CDS 55.0%
TGAGCGCTTGGATGATCCTG+AGG + chr1_4:54199617-54199636 Msa0170230:CDS 55.0%
! AGAGCATCAGGAGTCGAGCT+AGG + chr1_4:54200709-54200728 Msa0170230:CDS 55.0%
! CATTTTCATGCAGGGGCGAC+AGG + chr1_4:54201536-54201555 Msa0170230:intron 55.0%
! ATGAGCACTGCAGCTGCTAC+TGG - chr1_4:54201589-54201608 None:intergenic 55.0%
AGTAGCAGCTGCAGTGCTCA+TGG + chr1_4:54201588-54201607 Msa0170230:CDS 55.0%
! TCACAGCCTGAAAGGGTGCA+AGG + chr1_4:54202130-54202149 Msa0170230:three_prime_UTR 55.0%
CTAGCAGCAGCAGCTAGTGC+TGG - chr1_4:54197798-54197817 None:intergenic 60.0%
CAGCACTAGCTGCTGCTGCT+AGG + chr1_4:54197796-54197815 Msa0170230:CDS 60.0%
CTAGCTGCTGCTGCTAGGGA+TGG + chr1_4:54197801-54197820 Msa0170230:CDS 60.0%
CTAGGACGAGCATGGTCTCC+AGG + chr1_4:54199003-54199022 Msa0170230:CDS 60.0%
GACGAGCATGGTCTCCAGGT+TGG + chr1_4:54199007-54199026 Msa0170230:CDS 60.0%
TTTCATGCAGGGGCGACAGG+AGG + chr1_4:54201539-54201558 Msa0170230:intron 60.0%
CGCTCAAGCTCGTGACCGTC+TGG - chr1_4:54199603-54199622 None:intergenic 65.0%
CGGTCACGAGCTTGAGCGCT+TGG + chr1_4:54199605-54199624 Msa0170230:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54197049 54202853 54197049 ID=Msa0170230;Name=Msa0170230
chr1_4 mRNA 54197049 54202853 54197049 ID=Msa0170230-mRNA-1;Parent=Msa0170230;Name=Msa0170230-mRNA-1;_AED=0.13;_eAED=0.13;_QI=689|0.8|0.83|1|0.8|0.66|6|1118|625
chr1_4 exon 54197049 54198047 54197049 ID=Msa0170230-mRNA-1:exon:16175;Parent=Msa0170230-mRNA-1
chr1_4 exon 54198464 54198685 54198464 ID=Msa0170230-mRNA-1:exon:16176;Parent=Msa0170230-mRNA-1
chr1_4 exon 54198932 54199638 54198932 ID=Msa0170230-mRNA-1:exon:16177;Parent=Msa0170230-mRNA-1
chr1_4 exon 54200592 54201149 54200592 ID=Msa0170230-mRNA-1:exon:16178;Parent=Msa0170230-mRNA-1
chr1_4 exon 54201549 54202387 54201549 ID=Msa0170230-mRNA-1:exon:16179;Parent=Msa0170230-mRNA-1
chr1_4 exon 54202494 54202853 54202494 ID=Msa0170230-mRNA-1:exon:16180;Parent=Msa0170230-mRNA-1
chr1_4 five_prime_UTR 54197049 54197737 54197049 ID=Msa0170230-mRNA-1:five_prime_utr;Parent=Msa0170230-mRNA-1
chr1_4 CDS 54197738 54198047 54197738 ID=Msa0170230-mRNA-1:cds;Parent=Msa0170230-mRNA-1
chr1_4 CDS 54198464 54198685 54198464 ID=Msa0170230-mRNA-1:cds;Parent=Msa0170230-mRNA-1
chr1_4 CDS 54198932 54199638 54198932 ID=Msa0170230-mRNA-1:cds;Parent=Msa0170230-mRNA-1
chr1_4 CDS 54200592 54201149 54200592 ID=Msa0170230-mRNA-1:cds;Parent=Msa0170230-mRNA-1
chr1_4 CDS 54201549 54201629 54201549 ID=Msa0170230-mRNA-1:cds;Parent=Msa0170230-mRNA-1
chr1_4 three_prime_UTR 54201630 54202387 54201630 ID=Msa0170230-mRNA-1:three_prime_utr;Parent=Msa0170230-mRNA-1
chr1_4 three_prime_UTR 54202494 54202853 54202494 ID=Msa0170230-mRNA-1:three_prime_utr;Parent=Msa0170230-mRNA-1
Gene Sequence

>Msa0170230

ATGGGTAGCAATAGAACCATTGTTTGGTTTAGAAGGGATCTTAGAATTGAGGACAATCCAGCACTAGCTGCTGCTGCTAGGGATGGTTCTGTATTCCCTGTGTTTATATGGTGTCCTAAAGAGGAAGGACAATTTTATCCAGGAAGAGTTTCAAGGTGGTGGCTGAAGCAGTCTTTAGTTCACTTGGATCAGTCCTTGAAATCACTTGGTTCGAGACTCGTGTTGATCAAAACTGAGAGTACTCTCAATGCTCTCTTGGATTGTATAAATGCTATTCAAGCTACAAAAGTTGTGTTTAACCATCTCTATGATCCTGTTTCACTGGTTCGAGACCACAACATCAAAGAAAAGCTAGTGGAACTTGGCTTATCAGTGAAAAGCTATAATGGGGATCTGTTGTATGAGCCTTGGGAAGTATATGATGAGAAGGGACATGCTTTTACAACCTTCGATCCTTTTTGGCAGAGATGCTTGCACAAGCAAATGGAACCTGTTTCGCTTATTCCACCTTGGCAATTAATTCCTGCTGAAGGAAAAGTCAAGAAATGTTCAATAGAGGATTTAGGTCTCGAAAATGAATTAGAAAAACCAAGCAACGCGTTACTAGGACGAGCATGGTCTCCAGGTTGGAGCAATGCTGACAAGGCTTTAACAGAATTTATGGACAAGCAGCTACTTCACTACTCCAAGAATAGGCAAAAGGTTGGTGGAGACTCCACCTCGCTGTTATCCCCGTATCTCCATTTCGGAGAGTTGAGTGTGAGGAAAGTTTTTCAAATGGCTCGCATAAAGCAGATATTGTGGGGAAACGAAGGCAACAGTGTTGGAGAAGAAAGTGTAGCTCTTTTCCTTAGAGCAATTGGACTAAGAGAGTACTCGCGTTATCTTTGTTTCAATTTTCCGTTCACTCATGAGAGAGCACTTCTTGGACACTTGAGTTTTTTCCCTTGGAATGCTGATCCGTCAAACTTCAAGACTTGGAGACAAGGTAGGACTGGCTACCCTTTAGTTGATGCAGGAATGAGAGAACTTTGGGCTACAGGATGGATGCATAACCGAATCAGAGTTATAGTTTCAAGTTTTGCTGTGAAAATGTTGCTTCTACCTTGGAAATGGGGAATGAAGTATTTCTGGGACACGCTTTTGGATGCAGACCTTGAATGTGATATCCTCGGCTGGCAGTATATCTCAGGATGCTTACCAGACGGTCACGAGCTTGAGCGCTTGGATGATCCTGAGATTTTAGGATCTAGGTTTGATCCAGAAGGAGAATATGTAAGGCAATGGCTACCTGAGTTGGCAAGAATGCCAACTGAGTGGATCCATCATCCTTGGAATGCACCACTTAGTGTGCTCAGAGCATCAGGAGTCGAGCTAGGTCAAAACTATCCGAATCCAATAATTGATATAGATATGGCCAGAGAAAACCTGACTCAAGCCATATTCAAGATATGGGAAATGCAAGCAGCATCAAAAGCTTCTGGCTCTGAAGCAAGGGATGAAGTTGTTGCTGAAAGTGAATATCTAGACATTCCAAAAGTTGTCCTCCTTAAGGAAAAAGCTCCGTCTGCTACTATTTCAGCTAATGATCAGAAAGTGCCAGCATTTCAGGATCCTAAGAATGAACTACCTATTAGGAAGAGAACAAAATGTTTTGAAGAGAAGAGAAAGAACATGGAAAATTCCGTGAATCATGTGAAAGATAGTAATGTTTCAAGCTCTGACCATGAAGACACTTGCTCTACAGCTGACTCTTCGCGTAAGAAGCAGTGTAGTACAAGCACCTATTCATTTTCAGGGCGACAGGAGGTTGATGATGTCCTTATCTATAAATCCAGTAGCAGCTGCAGTGCTCATGGAAAGAAAATGGTGCCATAA
Protein sequence

>Msa0170230

MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLVHLDQSLKSLGSRLVLIKTESTLNALLDCINAIQATKVVFNHLYDPVSLVRDHNIKEKLVELGLSVKSYNGDLLYEPWEVYDEKGHAFTTFDPFWQRCLHKQMEPVSLIPPWQLIPAEGKVKKCSIEDLGLENELEKPSNALLGRAWSPGWSNADKALTEFMDKQLLHYSKNRQKVGGDSTSLLSPYLHFGELSVRKVFQMARIKQILWGNEGNSVGEESVALFLRAIGLREYSRYLCFNFPFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGSRFDPEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDMARENLTQAIFKIWEMQAASKASGSEARDEVVAESEYLDIPKVVLLKEKAPSATISANDQKVPAFQDPKNELPIRKRTKCFEEKRKNMENSVNHVKDSNVSSSDHEDTCSTADSSRKKQCSTSTYSFSGRQEVDDVLIYKSSSSCSAHGKKMVP*