Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490490 | XP_004499772.1 | 73.898 | 590 | 99 | 5 | 1 | 543 | 1 | 582 | 0.0 | 835 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490490 | A0A1S2Y7D5 | 73.898 | 590 | 99 | 5 | 1 | 543 | 1 | 582 | 0.0 | 835 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0443050 | Msa0490490 | 0.844673 | 6.537396e-59 | -8.615850e-47 |
| Msa0490490 | Msa0944550 | 0.802857 | 4.597142e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490490 | MtrunA17_Chr3g0081401 | 92.143 | 140 | 11 | 0 | 404 | 543 | 56 | 195 | 1.16e-79 | 248 |
| Msa0490490 | MtrunA17_Chr2g0313821 | 32.203 | 118 | 61 | 2 | 410 | 526 | 406 | 505 | 1.35e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490490 | AT3G14620.1 | 30.556 | 108 | 57 | 1 | 405 | 512 | 400 | 489 | 1.94e-11 | 67.0 |
| Msa0490490 | AT3G14610.1 | 32.039 | 103 | 52 | 1 | 410 | 512 | 402 | 486 | 3.65e-11 | 66.2 |
Find 120 sgRNAs with CRISPR-Local
Find 441 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATAATTCTCTTCTCTTT+TGG | 0.125347 | 3_4:+12097192 | None:intergenic |
| CATGAAAGAAATGGCAATTT+TGG | 0.171150 | 3_4:+12096712 | None:intergenic |
| GCATATGGCTTTCACATTAA+TGG | 0.194546 | 3_4:-12097042 | Msa0490490:CDS |
| TGAAGAAGAAGATTTGATTT+TGG | 0.225668 | 3_4:+12099385 | None:intergenic |
| AGAAGACCAATGAAAGTATT+TGG | 0.236313 | 3_4:+12099419 | None:intergenic |
| CCTATAATGTTACTCCGTTT+TGG | 0.257262 | 3_4:-12096920 | Msa0490490:CDS |
| CAGCCGTCTTCATCAATCTT+TGG | 0.280588 | 3_4:+12097156 | None:intergenic |
| CCAAAAGAGAAGAGAATTAT+TGG | 0.280911 | 3_4:-12097192 | Msa0490490:CDS |
| TGAAATGCTTTCCCAGTAAA+AGG | 0.287693 | 3_4:+12098018 | None:intergenic |
| CATATGGCTTTCACATTAAT+GGG | 0.288221 | 3_4:-12097041 | Msa0490490:CDS |
| AATGCAGCATTCCTTCCTTT+TGG | 0.291900 | 3_4:-12094272 | Msa0490490:CDS |
| TCGCTAAAGATACCTGCTTT+TGG | 0.299384 | 3_4:-12096947 | Msa0490490:CDS |
| CTATCAGCTGACTTCACTTC+CGG | 0.310618 | 3_4:+12096762 | None:intergenic |
| GACTAATCTTGTCATGCATT+TGG | 0.312347 | 3_4:-12096586 | Msa0490490:CDS |
| TCAGAATCACATGAGAATTA+TGG | 0.313116 | 3_4:-12098141 | Msa0490490:CDS |
| CCAAAACGGAGTAACATTAT+AGG | 0.321448 | 3_4:+12096920 | None:intergenic |
| TTGTAATGTTTGACAGAAAT+CGG | 0.337907 | 3_4:+12095830 | None:intergenic |
| CGGGTTGGTTTCTCAGCATA+TGG | 0.340271 | 3_4:-12097057 | Msa0490490:CDS |
| TCAGTTCCAAATACTTTCAT+TGG | 0.340283 | 3_4:-12099425 | Msa0490490:CDS |
| ATGTGTGAAGAAAACTATAA+AGG | 0.343797 | 3_4:+12093486 | None:intergenic |
| TGTGTTTCTGTTTCTTTCAC+TGG | 0.344561 | 3_4:+12093577 | None:intergenic |
| ATTCCTCGGAGACAGCTTCT+TGG | 0.362309 | 3_4:-12097012 | Msa0490490:CDS |
| CCAAGTTGTTGCTACATTGT+TGG | 0.369677 | 3_4:-12094210 | Msa0490490:CDS |
| GAAAACCTATGGCTCCTTGC+AGG | 0.385314 | 3_4:+12093265 | None:intergenic |
| TTTCATAGGAAGGGGCAAAA+AGG | 0.387562 | 3_4:+12097974 | None:intergenic |
| TGTCATGCATTTGGAAATAC+AGG | 0.388777 | 3_4:-12096577 | Msa0490490:CDS |
| TAAAGCTTCCCCTTTCATCT+TGG | 0.389543 | 3_4:+12093448 | None:intergenic |
| AAAGCATTTCATCTAGCCTT+TGG | 0.392485 | 3_4:-12098006 | Msa0490490:CDS |
| TACAGAAAGATGCCTTCAAT+TGG | 0.393942 | 3_4:-12095882 | Msa0490490:CDS |
| TCCTTCCCCTTCTCTGGATG+AGG | 0.399383 | 3_4:-12093244 | Msa0490490:three_prime_UTR |
| TAATGATCAACAAAATTCTA+AGG | 0.400670 | 3_4:-12096685 | Msa0490490:CDS |
| AATTCAAGAGATGCTTATAA+AGG | 0.400729 | 3_4:-12098055 | Msa0490490:CDS |
| GTTAGGTCCTACGAAGCTTC+TGG | 0.401965 | 3_4:-12098100 | Msa0490490:CDS |
| TCAGAGGAAGCATTAGTTGC+GGG | 0.403185 | 3_4:-12097076 | Msa0490490:CDS |
| ACAGAAAGATGCCTTCAATT+GGG | 0.405417 | 3_4:-12095881 | Msa0490490:CDS |
| TGTGTGAAGAAAACTATAAA+GGG | 0.414421 | 3_4:+12093487 | None:intergenic |
| ATCATGCGTGTGATGCTTCA+TGG | 0.414531 | 3_4:-12096645 | Msa0490490:CDS |
| GCATTTGGAAATACAGGATA+AGG | 0.414553 | 3_4:-12096571 | Msa0490490:CDS |
| TCCTCGTATATTGCAGCCTT+CGG | 0.416556 | 3_4:+12096984 | None:intergenic |
| TATAAAGCTAGAACCATTCC+TGG | 0.424429 | 3_4:-12099218 | Msa0490490:CDS |
| AGTACACAATGCCGTTCTAA+TGG | 0.427568 | 3_4:-12096741 | Msa0490490:CDS |
| GAAGCTTCTGGTGTCAGTTA+AGG | 0.431066 | 3_4:-12098088 | Msa0490490:CDS |
| TATCAGCTGACTTCACTTCC+GGG | 0.432160 | 3_4:+12096763 | None:intergenic |
| TCTGAAGAACTACTTGACTA+TGG | 0.440238 | 3_4:-12094329 | Msa0490490:CDS |
| CTGGTACACGTGCTTGCGTT+GGG | 0.442115 | 3_4:-12094247 | Msa0490490:CDS |
| ACTGGTTGTTCCTGTTCCAT+TGG | 0.444168 | 3_4:-12095905 | Msa0490490:CDS |
| TCCTCTTGTCCAGCATAATC+CGG | 0.447025 | 3_4:-12093628 | Msa0490490:CDS |
| TCAAACATTACAAAAGAATC+AGG | 0.447198 | 3_4:-12095820 | Msa0490490:intron |
| CATACCTGCTGGAGCTGTAC+TGG | 0.448348 | 3_4:-12095923 | Msa0490490:CDS |
| CATTAAGGTCATGAAAGAAA+TGG | 0.462699 | 3_4:+12096703 | None:intergenic |
| ATCCTTCAACATCGCAGAAA+AGG | 0.463697 | 3_4:-12096837 | Msa0490490:CDS |
| TCTTGTTATCACCACACCCT+TGG | 0.465674 | 3_4:-12099273 | Msa0490490:CDS |
| AAGGATGAAGAAGGAAGTCC+AGG | 0.468280 | 3_4:+12099200 | None:intergenic |
| CCAACAATGTAGCAACAACT+TGG | 0.469844 | 3_4:+12094210 | None:intergenic |
| CCAATTGTTAAGCTGTGGTT+AGG | 0.473359 | 3_4:-12098117 | Msa0490490:CDS |
| TCTTTCTGTACCAATGGAAC+AGG | 0.478966 | 3_4:+12095895 | None:intergenic |
| CAAAATCCTCGTTTCCAAAA+CGG | 0.480843 | 3_4:+12096906 | None:intergenic |
| CAGTACAGCTCCAGCAGGTA+TGG | 0.485112 | 3_4:+12095924 | None:intergenic |
| AAGCTTTACTCAAATATCAA+TGG | 0.487004 | 3_4:-12093433 | Msa0490490:three_prime_UTR |
| CCTAACCACAGCTTAACAAT+TGG | 0.492332 | 3_4:+12098117 | None:intergenic |
| CATGGCTTGAAGCCAACACT+AGG | 0.492878 | 3_4:+12093333 | None:intergenic |
| TTTGTGAATCCGGATTATGC+TGG | 0.493839 | 3_4:+12093619 | None:intergenic |
| ATACTATGTATAGATAAAGT+TGG | 0.495095 | 3_4:-12093551 | Msa0490490:three_prime_UTR |
| TCGGAGACAGCTTCTTGGCA+TGG | 0.502118 | 3_4:-12097007 | Msa0490490:CDS |
| TTTAATCACTGCCCTAGTGT+TGG | 0.505764 | 3_4:-12093345 | Msa0490490:three_prime_UTR |
| AGCATCTCTTGAATTAGCAC+TGG | 0.512609 | 3_4:+12098063 | None:intergenic |
| CTAGTGTTGGCTTCAAGCCA+TGG | 0.513796 | 3_4:-12093332 | Msa0490490:three_prime_UTR |
| GTAATTCAAGTCAATGATGC+AGG | 0.520514 | 3_4:-12093524 | Msa0490490:three_prime_UTR |
| AGCTGACTTCACTTCCGGGT+TGG | 0.521231 | 3_4:+12096767 | None:intergenic |
| CTCTCCAAAGAAAATTTCAC+TGG | 0.532733 | 3_4:-12099158 | Msa0490490:intron |
| TCTGGTACACGTGCTTGCGT+TGG | 0.533823 | 3_4:-12094248 | Msa0490490:CDS |
| AAGTCTCTAAGAAGCTCAGA+AGG | 0.534144 | 3_4:+12099335 | None:intergenic |
| AGGCTCAACTCAGGCTCAGA+TGG | 0.537182 | 3_4:-12093675 | Msa0490490:CDS |
| ATCACTACTCAAGAAATATG+AGG | 0.538533 | 3_4:-12094186 | Msa0490490:intron |
| CAGAAAGATGCCTTCAATTG+GGG | 0.539951 | 3_4:-12095880 | Msa0490490:CDS |
| ATATTCCTGCAAGGAGCCAT+AGG | 0.541711 | 3_4:-12093270 | Msa0490490:three_prime_UTR |
| CAGCTTCTTGGCATGGCCGA+AGG | 0.542192 | 3_4:-12097000 | Msa0490490:CDS |
| AAGGCATCTTTCTGTACCAA+TGG | 0.548470 | 3_4:+12095889 | None:intergenic |
| ATAGAAAACATCAGAGTCAG+AGG | 0.548768 | 3_4:-12097092 | Msa0490490:CDS |
| TCAGACTTGAGATTCGCAAC+TGG | 0.551541 | 3_4:-12095952 | Msa0490490:intron |
| ATGTTTGACAGAAATCGGTA+TGG | 0.560636 | 3_4:+12095835 | None:intergenic |
| TTAATGGGAGCCACATTCCT+CGG | 0.561489 | 3_4:-12097026 | Msa0490490:CDS |
| AAAGCTCCTCATCCAGAGAA+GGG | 0.561773 | 3_4:+12093238 | None:intergenic |
| TTTGGAATCCGCCATTAGAA+CGG | 0.562189 | 3_4:+12096730 | None:intergenic |
| ATTATAGGAAGCCCAAAAGC+AGG | 0.564766 | 3_4:+12096935 | None:intergenic |
| ATGGACCAATTGTTAAGCTG+TGG | 0.565422 | 3_4:-12098122 | Msa0490490:CDS |
| AGGAAGCATTAGTTGCGGGT+TGG | 0.566713 | 3_4:-12097072 | Msa0490490:CDS |
| ATAAAGTCTGCAACCTTCAG+AGG | 0.568588 | 3_4:+12097125 | None:intergenic |
| AGAAGGGGAAGGAAAACCTA+TGG | 0.570057 | 3_4:+12093254 | None:intergenic |
| ACTGGTGTAACCATACCTGC+TGG | 0.577641 | 3_4:-12095934 | Msa0490490:CDS |
| AAAAGCTCCTCATCCAGAGA+AGG | 0.578008 | 3_4:+12093237 | None:intergenic |
| TTGTAGTGAGAGTTCCAACC+CGG | 0.578455 | 3_4:-12096781 | Msa0490490:CDS |
| AGAGATGCTTATAAAGGCTG+AGG | 0.579962 | 3_4:-12098049 | Msa0490490:CDS |
| ACTGACACCAGAAGCTTCGT+AGG | 0.582455 | 3_4:+12098093 | None:intergenic |
| GCACGTGTACCAGATCCAAA+AGG | 0.587227 | 3_4:+12094257 | None:intergenic |
| GTCAGAGGAAGCATTAGTTG+CGG | 0.588840 | 3_4:-12097077 | Msa0490490:CDS |
| GGCTGATCTGAATCCTCTGA+AGG | 0.595422 | 3_4:-12097138 | Msa0490490:CDS |
| GAAGCTGTCTCCGAGGAATG+TGG | 0.601876 | 3_4:+12097016 | None:intergenic |
| TCCGGATTATGCTGGACAAG+AGG | 0.605621 | 3_4:+12093627 | None:intergenic |
| GACAAGATTAGTCAATACAT+TGG | 0.611955 | 3_4:+12096596 | None:intergenic |
| ACAACCAGTACAGCTCCAGC+AGG | 0.617716 | 3_4:+12095919 | None:intergenic |
| TGAAGAAGGAAGTCCAGGAA+TGG | 0.619436 | 3_4:+12099205 | None:intergenic |
| ATGCAGATAAGGCTCAACTC+AGG | 0.622392 | 3_4:-12093684 | Msa0490490:intron |
| AAGCTCCTCATCCAGAGAAG+GGG | 0.632277 | 3_4:+12093239 | None:intergenic |
| GATCATTGTGGTCATGTGGT+AGG | 0.636266 | 3_4:-12093411 | Msa0490490:three_prime_UTR |
| TCCTCATCCAGAGAAGGGGA+AGG | 0.637873 | 3_4:+12093243 | None:intergenic |
| GAACCAAAGATTGATGAAGA+CGG | 0.642532 | 3_4:-12097159 | Msa0490490:CDS |
| ATGGCTTGAAGCCAACACTA+GGG | 0.643816 | 3_4:+12093334 | None:intergenic |
| AGGGTATATATATTCCTGCA+AGG | 0.646273 | 3_4:-12093279 | Msa0490490:three_prime_UTR |
| ATACGAGGAATTACTTATGA+CGG | 0.648216 | 3_4:-12096970 | Msa0490490:CDS |
| AGAAAGATGCCTTCAATTGG+GGG | 0.649874 | 3_4:-12095879 | Msa0490490:CDS |
| ACACAATGCCGTTCTAATGG+CGG | 0.652270 | 3_4:-12096738 | Msa0490490:CDS |
| GTGTACCAGATCCAAAAGGA+AGG | 0.653046 | 3_4:+12094261 | None:intergenic |
| AATGGATCATTGTGGTCATG+TGG | 0.684219 | 3_4:-12093415 | Msa0490490:three_prime_UTR |
| CAAATATCAATGGATCATTG+TGG | 0.688084 | 3_4:-12093423 | Msa0490490:three_prime_UTR |
| AATTCTAAGGAAGAACCTTG+TGG | 0.695518 | 3_4:-12096672 | Msa0490490:CDS |
| ATGCCAAGAAGCTGTCTCCG+AGG | 0.701032 | 3_4:+12097009 | None:intergenic |
| GCCGAAGGCTGCAATATACG+AGG | 0.703655 | 3_4:-12096985 | Msa0490490:CDS |
| GAAGATGAATCAGTGAAACA+TGG | 0.726420 | 3_4:+12099452 | None:intergenic |
| ACACGCATGATGTTACCACA+AGG | 0.736475 | 3_4:+12096657 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTATAAGTTTATTTTT+AGG | - | chr3_4:12098101-12098120 | Msa0490490:CDS | 10.0% |
| !! | AACAACAAAAAAAAAAAACA+AGG | + | chr3_4:12094177-12094196 | None:intergenic | 15.0% |
| !! | CAATACTAATAATACTAAAA+TGG | + | chr3_4:12094448-12094467 | None:intergenic | 15.0% |
| !!! | ATTTCATTTAATTTGTCTTT+AGG | - | chr3_4:12095496-12095515 | Msa0490490:intron | 15.0% |
| !!! | AACAAATTTTAATTAAGAAC+TGG | + | chr3_4:12096197-12096216 | None:intergenic | 15.0% |
| !!! | TTCTTAATTAAAATTTGTTC+CGG | - | chr3_4:12096198-12096217 | Msa0490490:intron | 15.0% |
| !! | TCAAAAATGTTATTAGAAAA+GGG | - | chr3_4:12097352-12097371 | Msa0490490:intron | 15.0% |
| !! | AAATTTAAACTAAGATTGAA+GGG | + | chr3_4:12097853-12097872 | None:intergenic | 15.0% |
| !! | AAAATTTAAACTAAGATTGA+AGG | + | chr3_4:12097854-12097873 | None:intergenic | 15.0% |
| !! | AAATAAGAGTAAAAGAAAAT+GGG | + | chr3_4:12098202-12098221 | None:intergenic | 15.0% |
| !! | AAAATAAGAGTAAAAGAAAA+TGG | + | chr3_4:12098203-12098222 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTACTCTTATTT+TGG | - | chr3_4:12098202-12098221 | Msa0490490:intron | 15.0% |
| !! | AATGACAAATAATCAATATT+TGG | + | chr3_4:12098634-12098653 | None:intergenic | 15.0% |
| !! | AATATTAAAAGTTTATGACT+GGG | - | chr3_4:12098858-12098877 | Msa0490490:intron | 15.0% |
| !! | TAAGAAAATGAAAGTGATTT+AGG | - | chr3_4:12093685-12093704 | Msa0490490:intron | 20.0% |
| !! | AAGAAAATGAAAGTGATTTA+GGG | - | chr3_4:12093686-12093705 | Msa0490490:intron | 20.0% |
| !! | TCATGATTGTATTAAGAATT+TGG | - | chr3_4:12094197-12094216 | Msa0490490:CDS | 20.0% |
| !!! | TTAGTATTATTAGTATTGAC+AGG | - | chr3_4:12094450-12094469 | Msa0490490:intron | 20.0% |
| !!! | GATTATATGAGAAATTTTGT+TGG | + | chr3_4:12094777-12094796 | None:intergenic | 20.0% |
| !! | AATAGAGTAAATATCCAAAT+TGG | - | chr3_4:12095044-12095063 | Msa0490490:intron | 20.0% |
| !! | TATGTATTTCAAATATCTGT+AGG | - | chr3_4:12095414-12095433 | Msa0490490:intron | 20.0% |
| !!! | TAGAATTTTGTTGATCATTA+AGG | + | chr3_4:12096027-12096046 | None:intergenic | 20.0% |
| !! | TAATGATCAACAAAATTCTA+AGG | - | chr3_4:12096027-12096046 | Msa0490490:intron | 20.0% |
| !! | GAAACAAAAATAAAATGATC+CGG | + | chr3_4:12096220-12096239 | None:intergenic | 20.0% |
| !! | ATATTAAATTGCAAATCTTG+AGG | + | chr3_4:12096967-12096986 | None:intergenic | 20.0% |
| !!! | ACTTGATGATAAAAATTCTA+TGG | + | chr3_4:12097157-12097176 | None:intergenic | 20.0% |
| !! | CTCAAAAATGTTATTAGAAA+AGG | - | chr3_4:12097351-12097370 | Msa0490490:intron | 20.0% |
| !! | AATTTAAACTAAGATTGAAG+GGG | + | chr3_4:12097852-12097871 | None:intergenic | 20.0% |
| !!! | ATCTTAGTTTAAATTTTGTG+TGG | - | chr3_4:12097857-12097876 | Msa0490490:intron | 20.0% |
| !!! | ATTTTTAGGTACATAACTTA+AGG | - | chr3_4:12098115-12098134 | Msa0490490:CDS | 20.0% |
| !! | AATAAGAGTAAAAGAAAATG+GGG | + | chr3_4:12098201-12098220 | None:intergenic | 20.0% |
| !!! | TATTGATTATTTGTCATTCT+AGG | - | chr3_4:12098636-12098655 | Msa0490490:intron | 20.0% |
| !! | GTAGATTGAACAATTTATTA+TGG | + | chr3_4:12098726-12098745 | None:intergenic | 20.0% |
| !! | GAATATTAAAAGTTTATGAC+TGG | - | chr3_4:12098857-12098876 | Msa0490490:intron | 20.0% |
| !! | ACAAAAATTATTTGTGAATC+CGG | + | chr3_4:12099106-12099125 | None:intergenic | 20.0% |
| !!! | ACAAATAATTTTTGTGAGAA+GGG | - | chr3_4:12099111-12099130 | Msa0490490:intron | 20.0% |
| !! | ATACTATGTATAGATAAAGT+TGG | - | chr3_4:12099161-12099180 | Msa0490490:CDS | 20.0% |
| !!! | TGAAGAAGAAGATTTGATTT+TGG | + | chr3_4:12093330-12093349 | None:intergenic | 25.0% |
| !! | TTAAAGAGTCTTTTAACCAA+GGG | + | chr3_4:12093458-12093477 | None:intergenic | 25.0% |
| !! | ATTAAAGAGTCTTTTAACCA+AGG | + | chr3_4:12093459-12093478 | None:intergenic | 25.0% |
| !! | ATTACCAGTGAAATTTTCTT+TGG | + | chr3_4:12093561-12093580 | None:intergenic | 25.0% |
| ! | TTACAAAATCACGTTGAAAA+AGG | + | chr3_4:12093797-12093816 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAATTAG+TGG | - | chr3_4:12093930-12093949 | Msa0490490:intron | 25.0% |
| !! | TACAAATTTTCATGTGTAGA+TGG | - | chr3_4:12093964-12093983 | Msa0490490:intron | 25.0% |
| !! | ACAAATTTTCATGTGTAGAT+GGG | - | chr3_4:12093965-12093984 | Msa0490490:intron | 25.0% |
| ! | TTACAAAATCCAGATGTATT+AGG | + | chr3_4:12093996-12094015 | None:intergenic | 25.0% |
| !! | ATCTGGATTTTGTAATCAAT+TGG | - | chr3_4:12094001-12094020 | Msa0490490:intron | 25.0% |
| !! | TCTGGATTTTGTAATCAATT+GGG | - | chr3_4:12094002-12094021 | Msa0490490:intron | 25.0% |
| !! | GTGTTTTGCATATATATGTA+AGG | - | chr3_4:12094024-12094043 | Msa0490490:intron | 25.0% |
| ! | AACTTCCAATTTAAACCATT+CGG | + | chr3_4:12094146-12094165 | None:intergenic | 25.0% |
| !! | TAGCATTATCAATTTGTTTG+TGG | - | chr3_4:12094276-12094295 | Msa0490490:CDS | 25.0% |
| !! | ATTATCAATTTGTTTGTGGT+GGG | - | chr3_4:12094280-12094299 | Msa0490490:CDS | 25.0% |
| ! | AATTCAAGAGATGCTTATAA+AGG | - | chr3_4:12094657-12094676 | Msa0490490:intron | 25.0% |
| ! | AATTATTTAGCAGTACTCAA+TGG | - | chr3_4:12094964-12094983 | Msa0490490:intron | 25.0% |
| ! | TGACATTATTCACTTAATTG+TGG | - | chr3_4:12095085-12095104 | Msa0490490:intron | 25.0% |
| ! | GGTTTATATGATTCACTAAT+CGG | - | chr3_4:12095302-12095321 | Msa0490490:intron | 25.0% |
| !! | TTGCAAATTTAGAATGTTTG+TGG | - | chr3_4:12095331-12095350 | Msa0490490:intron | 25.0% |
| ! | GTAGTTAATCAGAAATCAAA+AGG | + | chr3_4:12095373-12095392 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTCAGAACAAGT+TGG | - | chr3_4:12096229-12096248 | Msa0490490:intron | 25.0% |
| ! | TTAAGTGTACTTATATGTGT+CGG | + | chr3_4:12096348-12096367 | None:intergenic | 25.0% |
| ! | TCTTAAATTATTAGCAGTGT+CGG | - | chr3_4:12096379-12096398 | Msa0490490:intron | 25.0% |
| !!! | TTATGTTCATATGTTTTTGC+AGG | - | chr3_4:12096464-12096483 | Msa0490490:intron | 25.0% |
| ! | GGTTTATTCAGAGATTATTA+TGG | - | chr3_4:12096485-12096504 | Msa0490490:intron | 25.0% |
| ! | ATTCAGAGATTATTATGGTT+AGG | - | chr3_4:12096490-12096509 | Msa0490490:intron | 25.0% |
| ! | TATTTATCTGTTCTACACAA+AGG | - | chr3_4:12096670-12096689 | Msa0490490:CDS | 25.0% |
| ! | TTATATTTACGTCTTCGAAT+TGG | - | chr3_4:12096699-12096718 | Msa0490490:CDS | 25.0% |
| ! | TACAAGGATAACAATAATGA+AGG | + | chr3_4:12096740-12096759 | None:intergenic | 25.0% |
| ! | TTGTAATGTTTGACAGAAAT+CGG | + | chr3_4:12096885-12096904 | None:intergenic | 25.0% |
| ! | TCAAACATTACAAAAGAATC+AGG | - | chr3_4:12096892-12096911 | Msa0490490:CDS | 25.0% |
| ! | GAGAGATAATGAATGAAAAT+GGG | - | chr3_4:12097288-12097307 | Msa0490490:intron | 25.0% |
| ! | AAAGTAGGACATATAAAGAA+AGG | - | chr3_4:12097654-12097673 | Msa0490490:intron | 25.0% |
| ! | AAGTAGGACATATAAAGAAA+GGG | - | chr3_4:12097655-12097674 | Msa0490490:intron | 25.0% |
| ! | ACAACAACAAATTATGATGT+AGG | + | chr3_4:12097808-12097827 | None:intergenic | 25.0% |
| !!! | TACATCATAATTTGTTGTTG+TGG | - | chr3_4:12097807-12097826 | Msa0490490:intron | 25.0% |
| !!! | ACATCATAATTTGTTGTTGT+GGG | - | chr3_4:12097808-12097827 | Msa0490490:intron | 25.0% |
| ! | ATTTAAACTAAGATTGAAGG+GGG | + | chr3_4:12097851-12097870 | None:intergenic | 25.0% |
| ! | TAACATGACTTTAACATAAG+GGG | + | chr3_4:12098144-12098163 | None:intergenic | 25.0% |
| ! | CTAACATGACTTTAACATAA+GGG | + | chr3_4:12098145-12098164 | None:intergenic | 25.0% |
| !!! | TTTTACTCTTATTTTGGTTG+TGG | - | chr3_4:12098208-12098227 | Msa0490490:intron | 25.0% |
| !! | CTGTCAATATCAGAAATTTT+CGG | + | chr3_4:12098317-12098336 | None:intergenic | 25.0% |
| ! | ATCCATCACTAATCTTATAA+TGG | - | chr3_4:12098346-12098365 | Msa0490490:intron | 25.0% |
| ! | TACCATTATAAGATTAGTGA+TGG | + | chr3_4:12098351-12098370 | None:intergenic | 25.0% |
| ! | CTTATAATGGTATTTCTTAC+AGG | - | chr3_4:12098359-12098378 | Msa0490490:intron | 25.0% |
| ! | TAGAAAGAATACTAATTCAC+AGG | + | chr3_4:12098557-12098576 | None:intergenic | 25.0% |
| !! | ATTATTTGTCATTCTAGGAA+AGG | - | chr3_4:12098641-12098660 | Msa0490490:intron | 25.0% |
| !! | TACTTTGCTATAGATATAGA+AGG | + | chr3_4:12098816-12098835 | None:intergenic | 25.0% |
| ! | ATTATTCCATAACTTTGTAG+AGG | - | chr3_4:12098914-12098933 | Msa0490490:intron | 25.0% |
| !! | ACGTAAAATTTTTCGTAATC+AGG | - | chr3_4:12098942-12098961 | Msa0490490:intron | 25.0% |
| !! | CACAAATAATTTTTGTGAGA+AGG | - | chr3_4:12099110-12099129 | Msa0490490:intron | 25.0% |
| ! | TGTGTGAAGAAAACTATAAA+GGG | + | chr3_4:12099228-12099247 | None:intergenic | 25.0% |
| ! | ATGTGTGAAGAAAACTATAA+AGG | + | chr3_4:12099229-12099248 | None:intergenic | 25.0% |
| ! | AAGCTTTACTCAAATATCAA+TGG | - | chr3_4:12099279-12099298 | Msa0490490:CDS | 25.0% |
| !! | GTTGTTTGTTTTTCTGAGTT+TGG | + | chr3_4:12093151-12093170 | None:intergenic | 30.0% |
| TCAGTTCCAAATACTTTCAT+TGG | - | chr3_4:12093287-12093306 | Msa0490490:three_prime_UTR | 30.0% | |
| !! | AGAAGACCAATGAAAGTATT+TGG | + | chr3_4:12093296-12093315 | None:intergenic | 30.0% |
| ! | GAGAATTCAATGCTTTTCTT+TGG | - | chr3_4:12093408-12093427 | Msa0490490:three_prime_UTR | 30.0% |
| GACTTTATAGTGTCCAAAAA+AGG | + | chr3_4:12093534-12093553 | None:intergenic | 30.0% | |
| ! | AAAGTGATTTAGGGTCTATT+TGG | - | chr3_4:12093695-12093714 | Msa0490490:intron | 30.0% |
| ! | TGTGATATTTTTCGTTGCAA+AGG | - | chr3_4:12094065-12094084 | Msa0490490:intron | 30.0% |
| TAAGTCCGAATGGTTTAAAT+TGG | - | chr3_4:12094138-12094157 | Msa0490490:intron | 30.0% | |
| ! | CATTATCAATTTGTTTGTGG+TGG | - | chr3_4:12094279-12094298 | Msa0490490:CDS | 30.0% |
| ! | TTATCAATTTGTTTGTGGTG+GGG | - | chr3_4:12094281-12094300 | Msa0490490:CDS | 30.0% |
| ATGAATACTATCATAGTCAG+AGG | - | chr3_4:12094318-12094337 | Msa0490490:CDS | 30.0% | |
| !! | TTATTAGTATTGACAGGTCA+AGG | - | chr3_4:12094456-12094475 | Msa0490490:intron | 30.0% |
| TCAGAATCACATGAGAATTA+TGG | - | chr3_4:12094571-12094590 | Msa0490490:intron | 30.0% | |
| ! | TAAGTACCTTTTCATAGGAA+GGG | + | chr3_4:12094750-12094769 | None:intergenic | 30.0% |
| ! | TTAAGTACCTTTTCATAGGA+AGG | + | chr3_4:12094751-12094770 | None:intergenic | 30.0% |
| GCACAACAAATTACAAGATA+AGG | + | chr3_4:12094810-12094829 | None:intergenic | 30.0% | |
| ! | GACATAGATAAATTTTCCTC+CGG | + | chr3_4:12094899-12094918 | None:intergenic | 30.0% |
| CATTATTCACTTAATTGTGG+AGG | - | chr3_4:12095088-12095107 | Msa0490490:intron | 30.0% | |
| TAGTGAACATGATTATCATC+GGG | + | chr3_4:12095256-12095275 | None:intergenic | 30.0% | |
| CTAGTGAACATGATTATCAT+CGG | + | chr3_4:12095257-12095276 | None:intergenic | 30.0% | |
| ! | AATGATCAGTGTTTCTGATT+AGG | - | chr3_4:12095281-12095300 | Msa0490490:intron | 30.0% |
| CCAAGCAACTATAGTTAAAA+TGG | + | chr3_4:12095475-12095494 | None:intergenic | 30.0% | |
| !!! | CCATTTTAACTATAGTTGCT+TGG | - | chr3_4:12095472-12095491 | Msa0490490:intron | 30.0% |
| ! | CCAATAATTCTCTTCTCTTT+TGG | + | chr3_4:12095523-12095542 | None:intergenic | 30.0% |
| CCAAAAGAGAAGAGAATTAT+TGG | - | chr3_4:12095520-12095539 | Msa0490490:intron | 30.0% | |
| CATATGGCTTTCACATTAAT+GGG | - | chr3_4:12095671-12095690 | Msa0490490:intron | 30.0% | |
| ATACGAGGAATTACTTATGA+CGG | - | chr3_4:12095742-12095761 | Msa0490490:intron | 30.0% | |
| !! | TACAAACATTTTGATCGATG+TGG | + | chr3_4:12095916-12095935 | None:intergenic | 30.0% |
| ! | CATGAAAGAAATGGCAATTT+TGG | + | chr3_4:12096003-12096022 | None:intergenic | 30.0% |
| CATTAAGGTCATGAAAGAAA+TGG | + | chr3_4:12096012-12096031 | None:intergenic | 30.0% | |
| ! | GACAAGATTAGTCAATACAT+TGG | + | chr3_4:12096119-12096138 | None:intergenic | 30.0% |
| TAAATTGTAGCCAATAGCAA+AGG | + | chr3_4:12096558-12096577 | None:intergenic | 30.0% | |
| TGAGAAAATAGGCAAGATAA+AGG | - | chr3_4:12096638-12096657 | Msa0490490:CDS | 30.0% | |
| AATAGGCAAGATAAAGGTTA+TGG | - | chr3_4:12096644-12096663 | Msa0490490:CDS | 30.0% | |
| CAGTTATTGCATTAATGACA+GGG | + | chr3_4:12097027-12097046 | None:intergenic | 30.0% | |
| ! | ACCATTTGTTGAAGCAATTA+TGG | - | chr3_4:12097049-12097068 | Msa0490490:CDS | 30.0% |
| ACCATAATTGCTTCAACAAA+TGG | + | chr3_4:12097053-12097072 | None:intergenic | 30.0% | |
| TAACTAGTGAAGAGTTTGAA+CGG | - | chr3_4:12097202-12097221 | Msa0490490:intron | 30.0% | |
| GGAGAGATAATGAATGAAAA+TGG | - | chr3_4:12097287-12097306 | Msa0490490:intron | 30.0% | |
| !!! | ATTTTTGAGATTCACCATGA+AGG | + | chr3_4:12097340-12097359 | None:intergenic | 30.0% |
| GTGCAAAACAAGATGATTTA+TGG | - | chr3_4:12097381-12097400 | Msa0490490:intron | 30.0% | |
| CATTGAATTACATACTTACC+TGG | - | chr3_4:12097683-12097702 | Msa0490490:intron | 30.0% | |
| AATTACATACTTACCTGGAT+GGG | - | chr3_4:12097688-12097707 | Msa0490490:intron | 30.0% | |
| !! | CATCATAATTTGTTGTTGTG+GGG | - | chr3_4:12097809-12097828 | Msa0490490:intron | 30.0% |
| !! | ATCATAATTTGTTGTTGTGG+GGG | - | chr3_4:12097810-12097829 | Msa0490490:intron | 30.0% |
| TGTTTGTCCTGAAAAAAATC+CGG | - | chr3_4:12098013-12098032 | Msa0490490:CDS | 30.0% | |
| CCTAACATGACTTTAACATA+AGG | + | chr3_4:12098146-12098165 | None:intergenic | 30.0% | |
| CCTTATGTTAAAGTCATGTT+AGG | - | chr3_4:12098143-12098162 | Msa0490490:CDS | 30.0% | |
| AAAGAAGATTGTGTGTGATT+TGG | - | chr3_4:12098246-12098265 | Msa0490490:intron | 30.0% | |
| AAGAAGATTGTGTGTGATTT+GGG | - | chr3_4:12098247-12098266 | Msa0490490:intron | 30.0% | |
| ATCACTACTCAAGAAATATG+AGG | - | chr3_4:12098526-12098545 | Msa0490490:intron | 30.0% | |
| AAAGGAAGACAAAAAGAAGA+AGG | - | chr3_4:12098659-12098678 | Msa0490490:intron | 30.0% | |
| AAGGAAGACAAAAAGAAGAA+GGG | - | chr3_4:12098660-12098679 | Msa0490490:intron | 30.0% | |
| TTCAATCTACATGAACGAAA+TGG | - | chr3_4:12098736-12098755 | Msa0490490:intron | 30.0% | |
| TTGTAACCTCTACAAAGTTA+TGG | + | chr3_4:12098923-12098942 | None:intergenic | 30.0% | |
| !! | GTTAGCTTTATATGCAGATA+AGG | - | chr3_4:12099017-12099036 | Msa0490490:intron | 30.0% |
| !!! | TCCTTTTTTTCCAAGATGAA+AGG | - | chr3_4:12099254-12099273 | Msa0490490:CDS | 30.0% |
| !!! | CCTTTTTTTCCAAGATGAAA+GGG | - | chr3_4:12099255-12099274 | Msa0490490:CDS | 30.0% |
| !!! | CTTTTTTTCCAAGATGAAAG+GGG | - | chr3_4:12099256-12099275 | Msa0490490:CDS | 30.0% |
| CAAATATCAATGGATCATTG+TGG | - | chr3_4:12099289-12099308 | Msa0490490:CDS | 30.0% | |
| ACTTACAAAAACATGTACCA+TGG | + | chr3_4:12099400-12099419 | None:intergenic | 30.0% | |
| !!! | TGTAAGTTTTTTAAGCACAC+AGG | - | chr3_4:12099413-12099432 | Msa0490490:CDS | 30.0% |
| !!! | GTAAGTTTTTTAAGCACACA+GGG | - | chr3_4:12099414-12099433 | Msa0490490:CDS | 30.0% |
| !! | GTTTGTTTTTCTGAGTTTGG+TGG | + | chr3_4:12093148-12093167 | None:intergenic | 35.0% |
| GAAGATGAATCAGTGAAACA+TGG | + | chr3_4:12093263-12093282 | None:intergenic | 35.0% | |
| TATAAAGCTAGAACCATTCC+TGG | - | chr3_4:12093494-12093513 | Msa0490490:three_prime_UTR | 35.0% | |
| !!! | CTTCCTTCTTCATCCTTTTT+TGG | - | chr3_4:12093518-12093537 | Msa0490490:three_prime_UTR | 35.0% |
| TGTCCAAAAAAGGATGAAGA+AGG | + | chr3_4:12093524-12093543 | None:intergenic | 35.0% | |
| !! | CAGTGAAATTTTCTTTGGAG+AGG | + | chr3_4:12093556-12093575 | None:intergenic | 35.0% |
| CTCTCCAAAGAAAATTTCAC+TGG | - | chr3_4:12093554-12093573 | Msa0490490:three_prime_UTR | 35.0% | |
| AGCACACTTATACCACTAAT+TGG | + | chr3_4:12093945-12093964 | None:intergenic | 35.0% | |
| ACACTGACAATTCAGGATAA+TGG | - | chr3_4:12094348-12094367 | Msa0490490:intron | 35.0% | |
| TTGAATGTAACCACATGTGT+CGG | + | chr3_4:12094420-12094439 | None:intergenic | 35.0% | |
| GTTAGTGCTTCATAGTTCAT+AGG | - | chr3_4:12094490-12094509 | Msa0490490:intron | 35.0% | |
| CAACACATCTGGAAATCAAA+AGG | + | chr3_4:12094551-12094570 | None:intergenic | 35.0% | |
| TGAAATGCTTTCCCAGTAAA+AGG | + | chr3_4:12094697-12094716 | None:intergenic | 35.0% | |
| ! | AAAGCATTTCATCTAGCCTT+TGG | - | chr3_4:12094706-12094725 | Msa0490490:intron | 35.0% |
| ! | AAGTACCTTTTCATAGGAAG+GGG | + | chr3_4:12094749-12094768 | None:intergenic | 35.0% |
| ! | GCAGTTAAGTACCTTTTCAT+AGG | + | chr3_4:12094755-12094774 | None:intergenic | 35.0% |
| TATGTCTGTTTCGATGTACT+TGG | - | chr3_4:12094941-12094960 | Msa0490490:intron | 35.0% | |
| TAAATATCCAAATTGGTCCC+TGG | - | chr3_4:12095051-12095070 | Msa0490490:intron | 35.0% | |
| GAACCAAAGATTGATGAAGA+CGG | - | chr3_4:12095553-12095572 | Msa0490490:intron | 35.0% | |
| ATAGAAAACATCAGAGTCAG+AGG | - | chr3_4:12095620-12095639 | Msa0490490:intron | 35.0% | |
| GCATATGGCTTTCACATTAA+TGG | - | chr3_4:12095670-12095689 | Msa0490490:intron | 35.0% | |
| CCAAAACGGAGTAACATTAT+AGG | + | chr3_4:12095795-12095814 | None:intergenic | 35.0% | |
| ! | CCTATAATGTTACTCCGTTT+TGG | - | chr3_4:12095792-12095811 | Msa0490490:intron | 35.0% |
| CAAAATCCTCGTTTCCAAAA+CGG | + | chr3_4:12095809-12095828 | None:intergenic | 35.0% | |
| ! | AGAAAAGGCTGCAAGATTTT+AGG | - | chr3_4:12095890-12095909 | Msa0490490:CDS | 35.0% |
| ! | AATTCTAAGGAAGAACCTTG+TGG | - | chr3_4:12096040-12096059 | Msa0490490:intron | 35.0% |
| GACTAATCTTGTCATGCATT+TGG | - | chr3_4:12096126-12096145 | Msa0490490:intron | 35.0% | |
| TGTCATGCATTTGGAAATAC+AGG | - | chr3_4:12096135-12096154 | Msa0490490:intron | 35.0% | |
| GCATTTGGAAATACAGGATA+AGG | - | chr3_4:12096141-12096160 | Msa0490490:intron | 35.0% | |
| !! | TCTTCATGCTCGTATTTTGA+TGG | + | chr3_4:12096522-12096541 | None:intergenic | 35.0% |
| ACGAGCATGAAGATGTTTAT+AGG | - | chr3_4:12096529-12096548 | Msa0490490:intron | 35.0% | |
| ! | TTATAGGATGCCTTTGCTAT+TGG | - | chr3_4:12096545-12096564 | Msa0490490:intron | 35.0% |
| ATGAAACACGGTGAGAAAAT+AGG | - | chr3_4:12096627-12096646 | Msa0490490:CDS | 35.0% | |
| TCTGTTCTACACAAAGGTTA+TGG | - | chr3_4:12096676-12096695 | Msa0490490:CDS | 35.0% | |
| TACAGAAAGATGCCTTCAAT+TGG | - | chr3_4:12096830-12096849 | Msa0490490:CDS | 35.0% | |
| ACAGAAAGATGCCTTCAATT+GGG | - | chr3_4:12096831-12096850 | Msa0490490:CDS | 35.0% | |
| ATGTTTGACAGAAATCGGTA+TGG | + | chr3_4:12096880-12096899 | None:intergenic | 35.0% | |
| AAATCTTGAGGTTGAGCATA+AGG | + | chr3_4:12096955-12096974 | None:intergenic | 35.0% | |
| CCAGTTATTGCATTAATGAC+AGG | + | chr3_4:12097028-12097047 | None:intergenic | 35.0% | |
| CCTGTCATTAATGCAATAAC+TGG | - | chr3_4:12097025-12097044 | Msa0490490:CDS | 35.0% | |
| TCAATCCTACAATATCTCTC+AGG | + | chr3_4:12097079-12097098 | None:intergenic | 35.0% | |
| ! | CAACATAGCAATGTTGTTTG+TGG | - | chr3_4:12097099-12097118 | Msa0490490:CDS | 35.0% |
| !! | AGAGTTTGAACGGATTTTTC+CGG | - | chr3_4:12097212-12097231 | Msa0490490:intron | 35.0% |
| CAAGATCTTAGATAACAGTG+AGG | - | chr3_4:12097266-12097285 | Msa0490490:intron | 35.0% | |
| !! | AGTTGTAGTTTGTTCTGTTG+TGG | + | chr3_4:12097475-12097494 | None:intergenic | 35.0% |
| GAATTACATACTTACCTGGA+TGG | - | chr3_4:12097687-12097706 | Msa0490490:intron | 35.0% | |
| ATTACATACTTACCTGGATG+GGG | - | chr3_4:12097689-12097708 | Msa0490490:intron | 35.0% | |
| ! | AAATGGGTTTGCAAAATGGT+TGG | + | chr3_4:12097963-12097982 | None:intergenic | 35.0% |
| ! | TGCAAAATGGGTTTGCAAAA+TGG | + | chr3_4:12097967-12097986 | None:intergenic | 35.0% |
| ! | TTTGCAAACCCATTTTGCAA+TGG | - | chr3_4:12097968-12097987 | Msa0490490:intron | 35.0% |
| ACTGAATGCCATTGCAAAAT+GGG | + | chr3_4:12097979-12097998 | None:intergenic | 35.0% | |
| TACTGAATGCCATTGCAAAA+TGG | + | chr3_4:12097980-12097999 | None:intergenic | 35.0% | |
| ATGTTAGGTTCTGTTTGAGA+GGG | - | chr3_4:12098158-12098177 | Msa0490490:intron | 35.0% | |
| AGAGTAAAAGAAAATGGGGA+GGG | + | chr3_4:12098197-12098216 | None:intergenic | 35.0% | |
| AAGAGTAAAAGAAAATGGGG+AGG | + | chr3_4:12098198-12098217 | None:intergenic | 35.0% | |
| ! | CAGAAATTTTCGGACTCTAA+AGG | + | chr3_4:12098307-12098326 | None:intergenic | 35.0% |
| TCTGAAGAACTACTTGACTA+TGG | - | chr3_4:12098383-12098402 | Msa0490490:intron | 35.0% | |
| AAAGCATGATGTGGAAAAAG+TGG | - | chr3_4:12098767-12098786 | Msa0490490:intron | 35.0% | |
| !!! | ACAAGAGGATTTTTCGAGAT+TGG | + | chr3_4:12099073-12099092 | None:intergenic | 35.0% |
| ! | TGTGTTTCTGTTTCTTTCAC+TGG | + | chr3_4:12099138-12099157 | None:intergenic | 35.0% |
| GTAATTCAAGTCAATGATGC+AGG | - | chr3_4:12099188-12099207 | Msa0490490:CDS | 35.0% | |
| CCCTTTCATCTTGGAAAAAA+AGG | + | chr3_4:12099258-12099277 | None:intergenic | 35.0% | |
| GGCAGTGATTAAAAATAGGA+AGG | + | chr3_4:12099360-12099379 | None:intergenic | 35.0% | |
| CTAGGGCAGTGATTAAAAAT+AGG | + | chr3_4:12099364-12099383 | None:intergenic | 35.0% | |
| AGGGTATATATATTCCTGCA+AGG | - | chr3_4:12099433-12099452 | Msa0490490:CDS | 35.0% | |
| !! | TGTTTTTCTGAGTTTGGTGG+CGG | + | chr3_4:12093145-12093164 | None:intergenic | 40.0% |
| ! | AAGTCTCTAAGAAGCTCAGA+AGG | + | chr3_4:12093380-12093399 | None:intergenic | 40.0% |
| TGGGTTTAGCCTAATACATC+TGG | - | chr3_4:12093984-12094003 | Msa0490490:intron | 40.0% | |
| GTTTGTGCTATAAGTCCGAA+TGG | - | chr3_4:12094128-12094147 | Msa0490490:intron | 40.0% | |
| CTATGCAACACTGACAATTC+AGG | - | chr3_4:12094341-12094360 | Msa0490490:intron | 40.0% | |
| ! | ATGAAGCACTAACACAAACG+CGG | + | chr3_4:12094483-12094502 | None:intergenic | 40.0% |
| TGTGATTCTGACAACACATC+TGG | + | chr3_4:12094562-12094581 | None:intergenic | 40.0% | |
| ATGGACCAATTGTTAAGCTG+TGG | - | chr3_4:12094590-12094609 | Msa0490490:intron | 40.0% | |
| CCTAACCACAGCTTAACAAT+TGG | + | chr3_4:12094598-12094617 | None:intergenic | 40.0% | |
| CCAATTGTTAAGCTGTGGTT+AGG | - | chr3_4:12094595-12094614 | Msa0490490:intron | 40.0% | |
| AGCATCTCTTGAATTAGCAC+TGG | + | chr3_4:12094652-12094671 | None:intergenic | 40.0% | |
| AGAGATGCTTATAAAGGCTG+AGG | - | chr3_4:12094663-12094682 | Msa0490490:intron | 40.0% | |
| ! | AGGATAAGCTGCCTTTTACT+GGG | - | chr3_4:12094683-12094702 | Msa0490490:intron | 40.0% |
| AAAAAGGCTTGAATGGCCAA+AGG | + | chr3_4:12094725-12094744 | None:intergenic | 40.0% | |
| TTTCATAGGAAGGGGCAAAA+AGG | + | chr3_4:12094741-12094760 | None:intergenic | 40.0% | |
| ! | TTTTGCCCCTTCCTATGAAA+AGG | - | chr3_4:12094741-12094760 | Msa0490490:intron | 40.0% |
| TTCATTGTTTCCAGCAATGC+CGG | - | chr3_4:12094877-12094896 | Msa0490490:intron | 40.0% | |
| AGCCAAATGCCTTGGTTTAA+GGG | + | chr3_4:12094990-12095009 | None:intergenic | 40.0% | |
| TAGCCAAATGCCTTGGTTTA+AGG | + | chr3_4:12094991-12095010 | None:intergenic | 40.0% | |
| TGGTAATTAGCCAAATGCCT+TGG | + | chr3_4:12094998-12095017 | None:intergenic | 40.0% | |
| ACACTCTTCTTCAGTTCAAC+TGG | + | chr3_4:12095018-12095037 | None:intergenic | 40.0% | |
| GGGAGAAGAAAACAATCTGT+GGG | + | chr3_4:12095236-12095255 | None:intergenic | 40.0% | |
| ATAAAGTCTGCAACCTTCAG+AGG | + | chr3_4:12095590-12095609 | None:intergenic | 40.0% | |
| ! | TCGCTAAAGATACCTGCTTT+TGG | - | chr3_4:12095765-12095784 | Msa0490490:intron | 40.0% |
| !! | CGCTAAAGATACCTGCTTTT+GGG | - | chr3_4:12095766-12095785 | Msa0490490:intron | 40.0% |
| ATTATAGGAAGCCCAAAAGC+AGG | + | chr3_4:12095780-12095799 | None:intergenic | 40.0% | |
| !!! | CGTTTTGGAAACGAGGATTT+TGG | - | chr3_4:12095807-12095826 | Msa0490490:intron | 40.0% |
| ATCCTTCAACATCGCAGAAA+AGG | - | chr3_4:12095875-12095894 | Msa0490490:CDS | 40.0% | |
| AGTACACAATGCCGTTCTAA+TGG | - | chr3_4:12095971-12095990 | Msa0490490:intron | 40.0% | |
| ! | TTTGGAATCCGCCATTAGAA+CGG | + | chr3_4:12095985-12096004 | None:intergenic | 40.0% |
| ! | GTACTTATATGTGTCGGTGT+CGG | + | chr3_4:12096342-12096361 | None:intergenic | 40.0% |
| TGACCTATGAAGCACAGATA+CGG | + | chr3_4:12096440-12096459 | None:intergenic | 40.0% | |
| !! | CAGAGGTGTTCTATGAAACA+CGG | - | chr3_4:12096615-12096634 | Msa0490490:CDS | 40.0% |
| CGAATCTCAAGTCTGATACA+AGG | + | chr3_4:12096756-12096775 | None:intergenic | 40.0% | |
| TCTTTCTGTACCAATGGAAC+AGG | + | chr3_4:12096820-12096839 | None:intergenic | 40.0% | |
| ! | AAGGCATCTTTCTGTACCAA+TGG | + | chr3_4:12096826-12096845 | None:intergenic | 40.0% |
| CAGAAAGATGCCTTCAATTG+GGG | - | chr3_4:12096832-12096851 | Msa0490490:CDS | 40.0% | |
| AGAAAGATGCCTTCAATTGG+GGG | - | chr3_4:12096833-12096852 | Msa0490490:CDS | 40.0% | |
| AAAACCTGCCAGCTAAGTAT+CGG | + | chr3_4:12096929-12096948 | None:intergenic | 40.0% | |
| GTGAACCTGAGAGATATTGT+AGG | - | chr3_4:12097071-12097090 | Msa0490490:CDS | 40.0% | |
| !! | GAGTTTGAACGGATTTTTCC+GGG | - | chr3_4:12097213-12097232 | Msa0490490:intron | 40.0% |
| !! | TAGTTTGTTCTGTTGTGGTC+TGG | + | chr3_4:12097470-12097489 | None:intergenic | 40.0% |
| GTGTCTGATATTGTCGATGT+GGG | + | chr3_4:12097624-12097643 | None:intergenic | 40.0% | |
| TGTGTCTGATATTGTCGATG+TGG | + | chr3_4:12097625-12097644 | None:intergenic | 40.0% | |
| ACAATATCAGACACAGCAGT+GGG | - | chr3_4:12097630-12097649 | Msa0490490:intron | 40.0% | |
| !!! | GATGTCACCGGATTTTTTTC+AGG | + | chr3_4:12098023-12098042 | None:intergenic | 40.0% |
| GAAAAAAATCCGGTGACATC+TGG | - | chr3_4:12098023-12098042 | Msa0490490:CDS | 40.0% | |
| CATGTTAGGTTCTGTTTGAG+AGG | - | chr3_4:12098157-12098176 | Msa0490490:intron | 40.0% | |
| ! | AGGAATGCTGCATTTTCACT+AGG | + | chr3_4:12098434-12098453 | None:intergenic | 40.0% |
| ! | AATGCAGCATTCCTTCCTTT+TGG | - | chr3_4:12098440-12098459 | Msa0490490:intron | 40.0% |
| CCAACAATGTAGCAACAACT+TGG | + | chr3_4:12098505-12098524 | None:intergenic | 40.0% | |
| CCAAGTTGTTGCTACATTGT+TGG | - | chr3_4:12098502-12098521 | Msa0490490:intron | 40.0% | |
| AAGAAGGGAATAGAAAGCCA+GGG | - | chr3_4:12098675-12098694 | Msa0490490:intron | 40.0% | |
| GTGACACTTAAAGCATGATG+TGG | - | chr3_4:12098758-12098777 | Msa0490490:intron | 40.0% | |
| TTTGTGAATCCGGATTATGC+TGG | + | chr3_4:12099096-12099115 | None:intergenic | 40.0% | |
| TAAAGCTTCCCCTTTCATCT+TGG | + | chr3_4:12099267-12099286 | None:intergenic | 40.0% | |
| AATGGATCATTGTGGTCATG+TGG | - | chr3_4:12099297-12099316 | Msa0490490:CDS | 40.0% | |
| TTTAATCACTGCCCTAGTGT+TGG | - | chr3_4:12099367-12099386 | Msa0490490:CDS | 40.0% | |
| ! | TCTTGTTATCACCACACCCT+TGG | - | chr3_4:12093439-12093458 | Msa0490490:three_prime_UTR | 45.0% |
| ! | GAGTCTTTTAACCAAGGGTG+TGG | + | chr3_4:12093453-12093472 | None:intergenic | 45.0% |
| TGAAGAAGGAAGTCCAGGAA+TGG | + | chr3_4:12093510-12093529 | None:intergenic | 45.0% | |
| AAGGATGAAGAAGGAAGTCC+AGG | + | chr3_4:12093515-12093534 | None:intergenic | 45.0% | |
| ! | GAAGCTTCTGGTGTCAGTTA+AGG | - | chr3_4:12094624-12094643 | Msa0490490:intron | 45.0% |
| ! | GAGGATAAGCTGCCTTTTAC+TGG | - | chr3_4:12094682-12094701 | Msa0490490:intron | 45.0% |
| AAGGGGCAAAAAGGCTTGAA+TGG | + | chr3_4:12094732-12094751 | None:intergenic | 45.0% | |
| ! | AAATTTTCCTCCGGCATTGC+TGG | + | chr3_4:12094890-12094909 | None:intergenic | 45.0% |
| ACTCAATGGCCCTTAAACCA+AGG | - | chr3_4:12094978-12094997 | Msa0490490:intron | 45.0% | |
| TGCAATTCCAGGGACCAATT+TGG | + | chr3_4:12095061-12095080 | None:intergenic | 45.0% | |
| ATGTCAGAGCTGCAATTCCA+GGG | + | chr3_4:12095071-12095090 | None:intergenic | 45.0% | |
| AATGTCAGAGCTGCAATTCC+AGG | + | chr3_4:12095072-12095091 | None:intergenic | 45.0% | |
| CGGGAGAAGAAAACAATCTG+TGG | + | chr3_4:12095237-12095256 | None:intergenic | 45.0% | |
| CAGCCGTCTTCATCAATCTT+TGG | + | chr3_4:12095559-12095578 | None:intergenic | 45.0% | |
| !! | GTCAGAGGAAGCATTAGTTG+CGG | - | chr3_4:12095635-12095654 | Msa0490490:intron | 45.0% |
| !! | TCAGAGGAAGCATTAGTTGC+GGG | - | chr3_4:12095636-12095655 | Msa0490490:intron | 45.0% |
| TTAATGGGAGCCACATTCCT+CGG | - | chr3_4:12095686-12095705 | Msa0490490:intron | 45.0% | |
| TCCTCGTATATTGCAGCCTT+CGG | + | chr3_4:12095731-12095750 | None:intergenic | 45.0% | |
| !!! | GTTACTCCGTTTTGGAAACG+AGG | - | chr3_4:12095800-12095819 | Msa0490490:intron | 45.0% |
| ! | AGCCTTTTCTGCGATGTTGA+AGG | + | chr3_4:12095880-12095899 | None:intergenic | 45.0% |
| TTGTAGTGAGAGTTCCAACC+CGG | - | chr3_4:12095931-12095950 | Msa0490490:CDS | 45.0% | |
| ! | TATCAGCTGACTTCACTTCC+GGG | + | chr3_4:12095952-12095971 | None:intergenic | 45.0% |
| ! | CTATCAGCTGACTTCACTTC+CGG | + | chr3_4:12095953-12095972 | None:intergenic | 45.0% |
| ACACAATGCCGTTCTAATGG+CGG | - | chr3_4:12095974-12095993 | Msa0490490:intron | 45.0% | |
| ACACGCATGATGTTACCACA+AGG | + | chr3_4:12096058-12096077 | None:intergenic | 45.0% | |
| ATCATGCGTGTGATGCTTCA+TGG | - | chr3_4:12096067-12096086 | Msa0490490:intron | 45.0% | |
| TATGAAGCACGAACACTCCT+CGG | - | chr3_4:12096281-12096300 | Msa0490490:intron | 45.0% | |
| ATGAAGCACAGATACGGACA+CGG | + | chr3_4:12096434-12096453 | None:intergenic | 45.0% | |
| TGTCCGTATCTGTGCTTCAT+AGG | - | chr3_4:12096434-12096453 | Msa0490490:intron | 45.0% | |
| ATAGAACACCTCTGCAGCAT+GGG | + | chr3_4:12096609-12096628 | None:intergenic | 45.0% | |
| TCAGACTTGAGATTCGCAAC+TGG | - | chr3_4:12096760-12096779 | Msa0490490:CDS | 45.0% | |
| ACTGGTTGTTCCTGTTCCAT+TGG | - | chr3_4:12096807-12096826 | Msa0490490:CDS | 45.0% | |
| TGCATCTTTCCCCCAATTGA+AGG | + | chr3_4:12096845-12096864 | None:intergenic | 45.0% | |
| AAACCTGCCAGCTAAGTATC+GGG | + | chr3_4:12096928-12096947 | None:intergenic | 45.0% | |
| ! | GACATGATCTACAGCACTGA+AGG | + | chr3_4:12096999-12097018 | None:intergenic | 45.0% |
| ! | ATGGTGTCGGGACTAGAAAT+TGG | - | chr3_4:12097241-12097260 | Msa0490490:intron | 45.0% |
| ACATGCAGAGAGAACCTTCA+TGG | - | chr3_4:12097323-12097342 | Msa0490490:intron | 45.0% | |
| GACAATATCAGACACAGCAG+TGG | - | chr3_4:12097629-12097648 | Msa0490490:intron | 45.0% | |
| CAATATCAGACACAGCAGTG+GGG | - | chr3_4:12097631-12097650 | Msa0490490:intron | 45.0% | |
| ATGTGACCTCCATTGCACTT+AGG | - | chr3_4:12097746-12097765 | Msa0490490:intron | 45.0% | |
| ! | TTCAGGACAAACAGCATCGA+TGG | + | chr3_4:12098006-12098025 | None:intergenic | 45.0% |
| AAAAATCCGGTGACATCTGG+TGG | - | chr3_4:12098026-12098045 | Msa0490490:CDS | 45.0% | |
| ! | GCATTCCTTCCTTTTGGATC+TGG | - | chr3_4:12098446-12098465 | Msa0490490:intron | 45.0% |
| GTGTACCAGATCCAAAAGGA+AGG | + | chr3_4:12098454-12098473 | None:intergenic | 45.0% | |
| GAAGAAGGGAATAGAAAGCC+AGG | - | chr3_4:12098674-12098693 | Msa0490490:intron | 45.0% | |
| ATGCAGATAAGGCTCAACTC+AGG | - | chr3_4:12099028-12099047 | Msa0490490:intron | 45.0% | |
| TCCTCTTGTCCAGCATAATC+CGG | - | chr3_4:12099084-12099103 | Msa0490490:intron | 45.0% | |
| GATCATTGTGGTCATGTGGT+AGG | - | chr3_4:12099301-12099320 | Msa0490490:CDS | 45.0% | |
| ATGGCTTGAAGCCAACACTA+GGG | + | chr3_4:12099381-12099400 | None:intergenic | 45.0% | |
| ATATTCCTGCAAGGAGCCAT+AGG | - | chr3_4:12099442-12099461 | Msa0490490:CDS | 45.0% | |
| AGAAGGGGAAGGAAAACCTA+TGG | + | chr3_4:12099461-12099480 | None:intergenic | 45.0% | |
| AAAGCTCCTCATCCAGAGAA+GGG | + | chr3_4:12099477-12099496 | None:intergenic | 45.0% | |
| AAAAGCTCCTCATCCAGAGA+AGG | + | chr3_4:12099478-12099497 | None:intergenic | 45.0% | |
| !!! | AAAGATAAAATTAAATTTTT+TGG | + | chr3_4:12093847-12093866 | None:intergenic | 5.0% |
| CTAAGTGTCAGTGTCGTCTC+TGG | + | chr3_4:12093650-12093669 | None:intergenic | 50.0% | |
| CACTGACACGTATCAGACAC+AGG | + | chr3_4:12094379-12094398 | None:intergenic | 50.0% | |
| TGACATGACACCGACACATG+TGG | - | chr3_4:12094407-12094426 | Msa0490490:intron | 50.0% | |
| GTTAGGTCCTACGAAGCTTC+TGG | - | chr3_4:12094612-12094631 | Msa0490490:intron | 50.0% | |
| ACTGACACCAGAAGCTTCGT+AGG | + | chr3_4:12094622-12094641 | None:intergenic | 50.0% | |
| ATTGTTTCCAGCAATGCCGG+AGG | - | chr3_4:12094880-12094899 | Msa0490490:intron | 50.0% | |
| ! | GGCCCTTAAACCAAGGCATT+TGG | - | chr3_4:12094985-12095004 | Msa0490490:intron | 50.0% |
| GGCTGATCTGAATCCTCTGA+AGG | - | chr3_4:12095574-12095593 | Msa0490490:intron | 50.0% | |
| !! | AGGAAGCATTAGTTGCGGGT+TGG | - | chr3_4:12095640-12095659 | Msa0490490:intron | 50.0% |
| !! | CGGGTTGGTTTCTCAGCATA+TGG | - | chr3_4:12095655-12095674 | Msa0490490:intron | 50.0% |
| ATTCCTCGGAGACAGCTTCT+TGG | - | chr3_4:12095700-12095719 | Msa0490490:intron | 50.0% | |
| ACACGACACATGTCCGACAT+CGG | + | chr3_4:12096319-12096338 | None:intergenic | 50.0% | |
| CATAGAACACCTCTGCAGCA+TGG | + | chr3_4:12096610-12096629 | None:intergenic | 50.0% | |
| ACTGGTGTAACCATACCTGC+TGG | - | chr3_4:12096778-12096797 | Msa0490490:CDS | 50.0% | |
| ! | AACCTGCCAGCTAAGTATCG+GGG | + | chr3_4:12096927-12096946 | None:intergenic | 50.0% |
| ! | CGGATTTTTCCGGGAAGTCA+TGG | - | chr3_4:12097222-12097241 | Msa0490490:intron | 50.0% |
| TTTCCGGGAAGTCATGGTGT+CGG | - | chr3_4:12097228-12097247 | Msa0490490:intron | 50.0% | |
| TGTTCTGTTGTGGTCTGGTC+TGG | + | chr3_4:12097465-12097484 | None:intergenic | 50.0% | |
| ACTTACCTGGATGGGGTCAA+TGG | - | chr3_4:12097696-12097715 | Msa0490490:intron | 50.0% | |
| CTTACCTGGATGGGGTCAAT+GGG | - | chr3_4:12097697-12097716 | Msa0490490:intron | 50.0% | |
| GGGTCAATGGGTGATCAAGA+AGG | - | chr3_4:12097709-12097728 | Msa0490490:intron | 50.0% | |
| AGGTCACATTCCTAGGCCAT+GGG | + | chr3_4:12097735-12097754 | None:intergenic | 50.0% | |
| GCAATGGAGGTCACATTCCT+AGG | + | chr3_4:12097742-12097761 | None:intergenic | 50.0% | |
| TGACCTCCATTGCACTTAGG+AGG | - | chr3_4:12097749-12097768 | Msa0490490:intron | 50.0% | |
| GACCTCCATTGCACTTAGGA+GGG | - | chr3_4:12097750-12097769 | Msa0490490:intron | 50.0% | |
| ACCTCCATTGCACTTAGGAG+GGG | - | chr3_4:12097751-12097770 | Msa0490490:intron | 50.0% | |
| CACTTGGGTAGACCTTAGGA+AGG | + | chr3_4:12097779-12097798 | None:intergenic | 50.0% | |
| CTTCCTAAGGTCTACCCAAG+TGG | - | chr3_4:12097777-12097796 | Msa0490490:intron | 50.0% | |
| TGATGTAGGCTCCACCACTT+GGG | + | chr3_4:12097794-12097813 | None:intergenic | 50.0% | |
| ATGATGTAGGCTCCACCACT+TGG | + | chr3_4:12097795-12097814 | None:intergenic | 50.0% | |
| ! | ATTTTGTGTGGCCGTTGCCT+AGG | - | chr3_4:12097869-12097888 | Msa0490490:intron | 50.0% |
| TTTCAGCCCTATCAGAGCCT+AGG | + | chr3_4:12097889-12097908 | None:intergenic | 50.0% | |
| GCACGTGTACCAGATCCAAA+AGG | + | chr3_4:12098458-12098477 | None:intergenic | 50.0% | |
| AGGGAATAGAAAGCCAGGGA+AGG | - | chr3_4:12098679-12098698 | Msa0490490:intron | 50.0% | |
| GGGAATAGAAAGCCAGGGAA+GGG | - | chr3_4:12098680-12098699 | Msa0490490:intron | 50.0% | |
| ACATTACACTGTCCCTTCCC+TGG | + | chr3_4:12098695-12098714 | None:intergenic | 50.0% | |
| TCCGGATTATGCTGGACAAG+AGG | + | chr3_4:12099088-12099107 | None:intergenic | 50.0% | |
| CATGGCTTGAAGCCAACACT+AGG | + | chr3_4:12099382-12099401 | None:intergenic | 50.0% | |
| !! | CTAGTGTTGGCTTCAAGCCA+TGG | - | chr3_4:12099380-12099399 | Msa0490490:CDS | 50.0% |
| GAAAACCTATGGCTCCTTGC+AGG | + | chr3_4:12099450-12099469 | None:intergenic | 50.0% | |
| ! | AGGTTTTCCTTCCCCTTCTC+TGG | - | chr3_4:12099462-12099481 | Msa0490490:CDS | 50.0% |
| AAGCTCCTCATCCAGAGAAG+GGG | + | chr3_4:12099476-12099495 | None:intergenic | 50.0% | |
| GTCAGTGTCGTCTCTGGTGT+CGG | + | chr3_4:12093644-12093663 | None:intergenic | 55.0% | |
| GAAGCTGTCTCCGAGGAATG+TGG | + | chr3_4:12095699-12095718 | None:intergenic | 55.0% | |
| ATGCCAAGAAGCTGTCTCCG+AGG | + | chr3_4:12095706-12095725 | None:intergenic | 55.0% | |
| TCGGAGACAGCTTCTTGGCA+TGG | - | chr3_4:12095705-12095724 | Msa0490490:intron | 55.0% | |
| GCCGAAGGCTGCAATATACG+AGG | - | chr3_4:12095727-12095746 | Msa0490490:intron | 55.0% | |
| ! | AGCTGACTTCACTTCCGGGT+TGG | + | chr3_4:12095948-12095967 | None:intergenic | 55.0% |
| GCACGAACACTCCTCGGATT+AGG | - | chr3_4:12096287-12096306 | Msa0490490:intron | 55.0% | |
| GATTAGGCGTGTCCCGATGT+CGG | - | chr3_4:12096303-12096322 | Msa0490490:intron | 55.0% | |
| CACGACACATGTCCGACATC+GGG | + | chr3_4:12096318-12096337 | None:intergenic | 55.0% | |
| ACAGATACGGACACGGACAC+CGG | + | chr3_4:12096427-12096446 | None:intergenic | 55.0% | |
| TCTGCAGCATGGGACCACTT+GGG | + | chr3_4:12096599-12096618 | None:intergenic | 55.0% | |
| CAGTACAGCTCCAGCAGGTA+TGG | + | chr3_4:12096791-12096810 | None:intergenic | 55.0% | |
| CATACCTGCTGGAGCTGTAC+TGG | - | chr3_4:12096789-12096808 | Msa0490490:CDS | 55.0% | |
| ACAACCAGTACAGCTCCAGC+AGG | + | chr3_4:12096796-12096815 | None:intergenic | 55.0% | |
| !! | ACCTGCCAGCTAAGTATCGG+GGG | + | chr3_4:12096926-12096945 | None:intergenic | 55.0% |
| TTCCGGGAAGTCATGGTGTC+GGG | - | chr3_4:12097229-12097248 | Msa0490490:intron | 55.0% | |
| GACACAGCAGTGGGGAAAGT+AGG | - | chr3_4:12097639-12097658 | Msa0490490:intron | 55.0% | |
| ATCACCCATTGACCCCATCC+AGG | + | chr3_4:12097704-12097723 | None:intergenic | 55.0% | |
| TGGGTGATCAAGAAGGCCCA+TGG | - | chr3_4:12097716-12097735 | Msa0490490:intron | 55.0% | |
| ATCAAGAAGGCCCATGGCCT+AGG | - | chr3_4:12097722-12097741 | Msa0490490:intron | 55.0% | |
| GAGGTCACATTCCTAGGCCA+TGG | + | chr3_4:12097736-12097755 | None:intergenic | 55.0% | |
| ACCCCTCCTAAGTGCAATGG+AGG | + | chr3_4:12097755-12097774 | None:intergenic | 55.0% | |
| !! | TTAGGAGGGGTGCCTTCCTA+AGG | - | chr3_4:12097764-12097783 | Msa0490490:intron | 55.0% |
| CCACCACTTGGGTAGACCTT+AGG | + | chr3_4:12097783-12097802 | None:intergenic | 55.0% | |
| CCTAAGGTCTACCCAAGTGG+TGG | - | chr3_4:12097780-12097799 | Msa0490490:intron | 55.0% | |
| CCCTATCAGAGCCTAGGCAA+CGG | + | chr3_4:12097883-12097902 | None:intergenic | 55.0% | |
| ! | CCGTTGCCTAGGCTCTGATA+GGG | - | chr3_4:12097880-12097899 | Msa0490490:intron | 55.0% |
| ! | TCTCACCTCGCCCCGTTTTA+TGG | - | chr3_4:12097910-12097929 | Msa0490490:intron | 55.0% |
| ! | GCAAAATGGTTGGCCCCGTA+GGG | + | chr3_4:12097953-12097972 | None:intergenic | 55.0% |
| ! | TGCAAAATGGTTGGCCCCGT+AGG | + | chr3_4:12097954-12097973 | None:intergenic | 55.0% |
| AATCCGGTGACATCTGGTGG+TGG | - | chr3_4:12098029-12098048 | Msa0490490:CDS | 55.0% | |
| TGACCACCACCAGATGTCAC+CGG | + | chr3_4:12098035-12098054 | None:intergenic | 55.0% | |
| TCTGGTACACGTGCTTGCGT+TGG | - | chr3_4:12098464-12098483 | Msa0490490:intron | 55.0% | |
| CTGGTACACGTGCTTGCGTT+GGG | - | chr3_4:12098465-12098484 | Msa0490490:intron | 55.0% | |
| AGGCTCAACTCAGGCTCAGA+TGG | - | chr3_4:12099037-12099056 | Msa0490490:intron | 55.0% | |
| TCCTTCCCCTTCTCTGGATG+AGG | - | chr3_4:12099468-12099487 | Msa0490490:CDS | 55.0% | |
| TCCTCATCCAGAGAAGGGGA+AGG | + | chr3_4:12099472-12099491 | None:intergenic | 55.0% | |
| CAGCTTCTTGGCATGGCCGA+AGG | - | chr3_4:12095712-12095731 | Msa0490490:intron | 60.0% | |
| ATCGGGACACGCCTAATCCG+AGG | + | chr3_4:12096301-12096320 | None:intergenic | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+CGG | - | chr3_4:12096405-12096424 | Msa0490490:intron | 60.0% | |
| TCTGCACGCCTTCTCCCAAG+TGG | - | chr3_4:12096582-12096601 | Msa0490490:CDS | 60.0% | |
| GCATGGGACCACTTGGGAGA+AGG | + | chr3_4:12096593-12096612 | None:intergenic | 60.0% | |
| CTCTGCAGCATGGGACCACT+TGG | + | chr3_4:12096600-12096619 | None:intergenic | 60.0% | |
| CAAGTGGTCCCATGCTGCAG+AGG | - | chr3_4:12096598-12096617 | Msa0490490:CDS | 60.0% | |
| !! | CTGCCAGCTAAGTATCGGGG+GGG | + | chr3_4:12096924-12096943 | None:intergenic | 60.0% |
| !! | CCTGCCAGCTAAGTATCGGG+GGG | + | chr3_4:12096925-12096944 | None:intergenic | 60.0% |
| GTCCCGACACCATGACTTCC+CGG | + | chr3_4:12097234-12097253 | None:intergenic | 60.0% | |
| GGCACCCCTCCTAAGTGCAA+TGG | + | chr3_4:12097758-12097777 | None:intergenic | 60.0% | |
| ! | GCCGTTGCCTAGGCTCTGAT+AGG | - | chr3_4:12097879-12097898 | Msa0490490:intron | 60.0% |
| ! | CACCTCGCCCCGTTTTATGG+CGG | - | chr3_4:12097913-12097932 | Msa0490490:intron | 60.0% |
| TCCGCCGGTCCGCCATAAAA+CGG | + | chr3_4:12097925-12097944 | None:intergenic | 60.0% | |
| !! | TTTATGGCGGACCGGCGGAT+TGG | - | chr3_4:12097926-12097945 | Msa0490490:intron | 60.0% |
| !! | GGTGACATCTGGTGGTGGTC+AGG | - | chr3_4:12098034-12098053 | Msa0490490:CDS | 60.0% |
| CACGGACACCGGACACGACA+CGG | + | chr3_4:12096416-12096435 | None:intergenic | 65.0% | |
| GAGCCCCCCCGATACTTAGC+TGG | - | chr3_4:12096918-12096937 | Msa0490490:CDS | 65.0% | |
| CCCCCCGATACTTAGCTGGC+AGG | - | chr3_4:12096922-12096941 | Msa0490490:CDS | 65.0% | |
| GTCCGCCATAAAACGGGGCG+AGG | + | chr3_4:12097918-12097937 | None:intergenic | 65.0% | |
| !!! | CGCCCCGTTTTATGGCGGAC+CGG | - | chr3_4:12097918-12097937 | Msa0490490:intron | 65.0% |
| CGCCGGTCCGCCATAAAACG+GGG | + | chr3_4:12097923-12097942 | None:intergenic | 65.0% | |
| CCGCCGGTCCGCCATAAAAC+GGG | + | chr3_4:12097924-12097943 | None:intergenic | 65.0% | |
| !!! | CCCGTTTTATGGCGGACCGG+CGG | - | chr3_4:12097921-12097940 | Msa0490490:intron | 65.0% |
| !! | GACCGGCGGATTGGACCCTA+CGG | - | chr3_4:12097935-12097954 | Msa0490490:intron | 65.0% |
| !! | ACCGGCGGATTGGACCCTAC+GGG | - | chr3_4:12097936-12097955 | Msa0490490:intron | 65.0% |
| CCCCGTAGGGTCCAATCCGC+CGG | + | chr3_4:12097940-12097959 | None:intergenic | 70.0% | |
| !! | CCGGCGGATTGGACCCTACG+GGG | - | chr3_4:12097937-12097956 | Msa0490490:intron | 70.0% |
| TGTGGGGGCCTGCGTTCGCG+CGG | - | chr3_4:12097825-12097844 | Msa0490490:intron | 75.0% | |
| ! | GAAGGGGGCCGCGCGAACGC+AGG | + | chr3_4:12097836-12097855 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 12093142 | 12099592 | 12093142 | ID=Msa0490490;Name=Msa0490490 |
| chr3_4 | mRNA | 12093142 | 12099592 | 12093142 | ID=Msa0490490-mRNA-1;Parent=Msa0490490;Name=Msa0490490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=82|0.8|0.83|1|1|0.83|6|451|543 |
| chr3_4 | exon | 12093142 | 12093700 | 12093142 | ID=Msa0490490-mRNA-1:exon:3753;Parent=Msa0490490-mRNA-1 |
| chr3_4 | exon | 12094187 | 12094353 | 12094187 | ID=Msa0490490-mRNA-1:exon:3752;Parent=Msa0490490-mRNA-1 |
| chr3_4 | exon | 12095821 | 12095970 | 12095821 | ID=Msa0490490-mRNA-1:exon:3751;Parent=Msa0490490-mRNA-1 |
| chr3_4 | exon | 12096562 | 12097216 | 12096562 | ID=Msa0490490-mRNA-1:exon:3750;Parent=Msa0490490-mRNA-1 |
| chr3_4 | exon | 12097972 | 12098171 | 12097972 | ID=Msa0490490-mRNA-1:exon:3749;Parent=Msa0490490-mRNA-1 |
| chr3_4 | exon | 12099159 | 12099592 | 12099159 | ID=Msa0490490-mRNA-1:exon:3748;Parent=Msa0490490-mRNA-1 |
| chr3_4 | five_prime_UTR | 12099511 | 12099592 | 12099511 | ID=Msa0490490-mRNA-1:five_prime_utr;Parent=Msa0490490-mRNA-1 |
| chr3_4 | CDS | 12099159 | 12099510 | 12099159 | ID=Msa0490490-mRNA-1:cds;Parent=Msa0490490-mRNA-1 |
| chr3_4 | CDS | 12097972 | 12098171 | 12097972 | ID=Msa0490490-mRNA-1:cds;Parent=Msa0490490-mRNA-1 |
| chr3_4 | CDS | 12096562 | 12097216 | 12096562 | ID=Msa0490490-mRNA-1:cds;Parent=Msa0490490-mRNA-1 |
| chr3_4 | CDS | 12095821 | 12095970 | 12095821 | ID=Msa0490490-mRNA-1:cds;Parent=Msa0490490-mRNA-1 |
| chr3_4 | CDS | 12094187 | 12094353 | 12094187 | ID=Msa0490490-mRNA-1:cds;Parent=Msa0490490-mRNA-1 |
| chr3_4 | CDS | 12093593 | 12093700 | 12093593 | ID=Msa0490490-mRNA-1:cds;Parent=Msa0490490-mRNA-1 |
| chr3_4 | three_prime_UTR | 12093142 | 12093592 | 12093142 | ID=Msa0490490-mRNA-1:three_prime_utr;Parent=Msa0490490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
