Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443050 | XP_004499772.1 | 74.237 | 590 | 97 | 5 | 1 | 543 | 1 | 582 | 0.0 | 841 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443050 | A0A1S2Y7D5 | 74.237 | 590 | 97 | 5 | 1 | 543 | 1 | 582 | 0.0 | 841 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0443050 | Msa0490490 | 0.844673 | 6.537396e-59 | -8.615850e-47 |
| Msa0443050 | Msa0543900 | 0.809006 | 2.342155e-50 | -8.615850e-47 |
| Msa0443050 | Msa0599770 | 0.807094 | 5.979048e-50 | -8.615850e-47 |
| Msa0443050 | Msa0678820 | 0.800845 | 1.190647e-48 | -8.615850e-47 |
| Msa0443050 | Msa0944550 | 0.819762 | 9.796912e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443050 | MtrunA17_Chr3g0081401 | 90.000 | 140 | 14 | 0 | 404 | 543 | 56 | 195 | 4.04e-77 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 124 sgRNAs with CRISPR-Local
Find 441 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATAATTCTCTTCTCTTT+TGG | 0.125347 | 3_3:+13551765 | None:intergenic |
| CACGAAAGAAATGGCAATTT+TGG | 0.171766 | 3_3:+13551285 | None:intergenic |
| GCATATGGCTTTCACATTAA+TGG | 0.194546 | 3_3:-13551615 | Msa0443050:CDS |
| TGAAGAAGAAGATTTGATTT+TGG | 0.225668 | 3_3:+13554058 | None:intergenic |
| AGAAGACCAATGAAAGTATT+TGG | 0.236313 | 3_3:+13554092 | None:intergenic |
| CCTATAATGTTACTCCGTTT+TGG | 0.257262 | 3_3:-13551493 | Msa0443050:CDS |
| TTATTTGTGAATCCGGATTA+TGG | 0.274733 | 3_3:+13548241 | None:intergenic |
| CAGCCGTCTTCATCAATCTT+TGG | 0.280588 | 3_3:+13551729 | None:intergenic |
| CCAAAAGAGAAGAGAATTAT+TGG | 0.280911 | 3_3:-13551765 | Msa0443050:CDS |
| TGAAATGCTTTCCCAGTAAA+AGG | 0.287693 | 3_3:+13552691 | None:intergenic |
| CATATGGCTTTCACATTAAT+GGG | 0.288221 | 3_3:-13551614 | Msa0443050:CDS |
| TCGCTAAAGATACCTGCTTT+TGG | 0.299384 | 3_3:-13551520 | Msa0443050:CDS |
| CTATCAGCTGACTTCACTTC+CGG | 0.310618 | 3_3:+13551335 | None:intergenic |
| GACTAATCTTGTCATGCATT+TGG | 0.312347 | 3_3:-13551159 | Msa0443050:CDS |
| TCAGAATCACATGAGAATTA+TGG | 0.313116 | 3_3:-13552814 | Msa0443050:CDS |
| CCAAAACGGAGTAACATTAT+AGG | 0.321448 | 3_3:+13551493 | None:intergenic |
| ATGCGTGAAGAAAACTATAA+AGG | 0.333476 | 3_3:+13548111 | None:intergenic |
| TTGTAATGTTTGACAGAAAT+CGG | 0.337907 | 3_3:+13550403 | None:intergenic |
| CGGGTTGGTTTCTCAGCATA+TGG | 0.340271 | 3_3:-13551630 | Msa0443050:CDS |
| TCAGTTCCAAATACTTTCAT+TGG | 0.340283 | 3_3:-13554098 | Msa0443050:CDS |
| TGTCTTTCTGTTTCTTTCAC+TGG | 0.344561 | 3_3:+13548202 | None:intergenic |
| ACAAAAGTTATTTGTGAATC+CGG | 0.358538 | 3_3:+13548234 | None:intergenic |
| ATTCCTCGGAGACAGCTTCT+TGG | 0.362309 | 3_3:-13551585 | Msa0443050:CDS |
| CCAAGTTGTTGCTACATTGT+TGG | 0.369677 | 3_3:-13548805 | Msa0443050:CDS |
| GAAAACCTATGGCTCCTTGC+AGG | 0.385314 | 3_3:+13547888 | None:intergenic |
| TTTCATAGGAAGGGGCAAAA+AGG | 0.387562 | 3_3:+13552647 | None:intergenic |
| TGTCATGCATTTGGAAATAC+AGG | 0.388777 | 3_3:-13551150 | Msa0443050:CDS |
| TAAAGCTTCCCCTTTCATCT+TGG | 0.389543 | 3_3:+13548073 | None:intergenic |
| AAAGCATTTCATCTAGCCTT+TGG | 0.392485 | 3_3:-13552679 | Msa0443050:CDS |
| TACAGAAAGATGCCTTCAAT+TGG | 0.393942 | 3_3:-13550455 | Msa0443050:CDS |
| TCCTTCCCCTTCTCTGGATG+AGG | 0.399383 | 3_3:-13547867 | Msa0443050:three_prime_UTR |
| TAATGATCAACAAAATTCTA+AGG | 0.400670 | 3_3:-13551258 | Msa0443050:CDS |
| AATTCAAGAGATGCTTATAA+AGG | 0.400729 | 3_3:-13552728 | Msa0443050:CDS |
| GTTAGGTCCTACGAAGCTTC+TGG | 0.401965 | 3_3:-13552773 | Msa0443050:CDS |
| TCAGAGGAAGCATTAGTTGC+GGG | 0.403185 | 3_3:-13551649 | Msa0443050:CDS |
| ACAGAAAGATGCCTTCAATT+GGG | 0.405417 | 3_3:-13550454 | Msa0443050:CDS |
| AATGCAGCATTCCTTCCTTT+CGG | 0.405989 | 3_3:-13548867 | Msa0443050:CDS |
| ATCATTACTCAAGAAATATC+AGG | 0.406307 | 3_3:-13548781 | Msa0443050:intron |
| GCATTCCTTCCTTTCGGATC+CGG | 0.407693 | 3_3:-13548861 | Msa0443050:CDS |
| TCTTGTTATCACCACACTCT+TGG | 0.411972 | 3_3:-13553946 | Msa0443050:CDS |
| ATCATGCGTGTGATGCTTCA+TGG | 0.414531 | 3_3:-13551218 | Msa0443050:CDS |
| GCATTTGGAAATACAGGATA+AGG | 0.414553 | 3_3:-13551144 | Msa0443050:CDS |
| TCCTCGTATATTGCAGCCTT+CGG | 0.416556 | 3_3:+13551557 | None:intergenic |
| TGCGTGAAGAAAACTATAAA+GGG | 0.421376 | 3_3:+13548112 | None:intergenic |
| TATAAAGCTAGAACCATTCC+TGG | 0.424429 | 3_3:-13553891 | Msa0443050:CDS |
| AGTACACAATGCCGTTCTAA+TGG | 0.427568 | 3_3:-13551314 | Msa0443050:CDS |
| GAAGCTTCTGGTGTCAGTTA+AGG | 0.431066 | 3_3:-13552761 | Msa0443050:CDS |
| TATCAGCTGACTTCACTTCC+GGG | 0.432160 | 3_3:+13551336 | None:intergenic |
| TCTGAAGAACTACTTGACTA+TGG | 0.440238 | 3_3:-13548924 | Msa0443050:CDS |
| ACTGGTTGTTCCTGTTCCAT+TGG | 0.444168 | 3_3:-13550478 | Msa0443050:CDS |
| TCAAACATTACAAAAGAATC+AGG | 0.447198 | 3_3:-13550393 | Msa0443050:intron |
| CATACCTGCTGGAGCTGTAC+TGG | 0.448348 | 3_3:-13550496 | Msa0443050:CDS |
| ATCCTTCAACATCGCAGAAA+AGG | 0.463697 | 3_3:-13551410 | Msa0443050:CDS |
| AAGGATGAAGAAGGAAGTCC+AGG | 0.468280 | 3_3:+13553873 | None:intergenic |
| CCAACAATGTAGCAACAACT+TGG | 0.469844 | 3_3:+13548805 | None:intergenic |
| CCAATTGTTAAGCTGTGGTT+AGG | 0.473359 | 3_3:-13552790 | Msa0443050:CDS |
| CCGGTACACATGCTTGCGTT+GGG | 0.473734 | 3_3:-13548842 | Msa0443050:CDS |
| TCCGGTACACATGCTTGCGT+TGG | 0.473832 | 3_3:-13548843 | Msa0443050:CDS |
| TCTTTCTGTACCAATGGAAC+AGG | 0.478966 | 3_3:+13550468 | None:intergenic |
| CAAAATCCTCGTTTCCAAAA+CGG | 0.480843 | 3_3:+13551479 | None:intergenic |
| TCATCTTGTCCACCATAATC+CGG | 0.481329 | 3_3:-13548253 | Msa0443050:CDS |
| CATTAAGGTCACGAAAGAAA+TGG | 0.481894 | 3_3:+13551276 | None:intergenic |
| CAGTACAGCTCCAGCAGGTA+TGG | 0.485112 | 3_3:+13550497 | None:intergenic |
| CCTAACCACAGCTTAACAAT+TGG | 0.492332 | 3_3:+13552790 | None:intergenic |
| CATGGCTTGAAGCCAACACT+AGG | 0.492878 | 3_3:+13547958 | None:intergenic |
| ATACTATGTATAGATAAAGT+TGG | 0.495095 | 3_3:-13548176 | Msa0443050:three_prime_UTR |
| TCGGAGACAGCTTCTTGGCA+TGG | 0.502118 | 3_3:-13551580 | Msa0443050:CDS |
| TTTAATCACTGCCCTAGTGT+TGG | 0.505764 | 3_3:-13547970 | Msa0443050:three_prime_UTR |
| AAGCTTTACTCAAATATCAA+TGG | 0.506642 | 3_3:-13548058 | Msa0443050:three_prime_UTR |
| AGCATCTCTTGAATTAGCAC+TGG | 0.512609 | 3_3:+13552736 | None:intergenic |
| CTAGTGTTGGCTTCAAGCCA+TGG | 0.513796 | 3_3:-13547957 | Msa0443050:three_prime_UTR |
| AATTCTCTAAGAAGCTCAGA+AGG | 0.520077 | 3_3:+13554008 | None:intergenic |
| GTAATTCAAGTCAATGATGC+AGG | 0.520514 | 3_3:-13548149 | Msa0443050:three_prime_UTR |
| AGCTGACTTCACTTCCGGGT+TGG | 0.521231 | 3_3:+13551340 | None:intergenic |
| CTCTCCAAAGAAAATTTCAC+TGG | 0.532733 | 3_3:-13553831 | Msa0443050:intron |
| CAGAAAGATGCCTTCAATTG+GGG | 0.539951 | 3_3:-13550453 | Msa0443050:CDS |
| ATATTCCTGCAAGGAGCCAT+AGG | 0.541711 | 3_3:-13547893 | Msa0443050:three_prime_UTR |
| CAGCTTCTTGGCATGGCCGA+AGG | 0.542192 | 3_3:-13551573 | Msa0443050:CDS |
| CACAGGCTCAGATGGTGACT+CGG | 0.547789 | 3_3:-13548292 | Msa0443050:CDS |
| AAGGCATCTTTCTGTACCAA+TGG | 0.548470 | 3_3:+13550462 | None:intergenic |
| ATAGAAAACATCAGAGTCAG+AGG | 0.548768 | 3_3:-13551665 | Msa0443050:CDS |
| TCAGACTTGAGATTCGCAAC+TGG | 0.551541 | 3_3:-13550525 | Msa0443050:intron |
| AGGCTCAACACAGGCTCAGA+TGG | 0.558574 | 3_3:-13548300 | Msa0443050:CDS |
| ATGTTTGACAGAAATCGGTA+TGG | 0.560636 | 3_3:+13550408 | None:intergenic |
| TTAATGGGAGCCACATTCCT+CGG | 0.561489 | 3_3:-13551599 | Msa0443050:CDS |
| AAAGCTCCTCATCCAGAGAA+GGG | 0.561773 | 3_3:+13547861 | None:intergenic |
| TTTGGAATCCGCCATTAGAA+CGG | 0.562189 | 3_3:+13551303 | None:intergenic |
| ATTATAGGAAGCCCAAAAGC+AGG | 0.564766 | 3_3:+13551508 | None:intergenic |
| ATGGACCAATTGTTAAGCTG+TGG | 0.565422 | 3_3:-13552795 | Msa0443050:CDS |
| AGGAAGCATTAGTTGCGGGT+TGG | 0.566713 | 3_3:-13551645 | Msa0443050:CDS |
| ATAAAGTCTGCAACCTTCAG+AGG | 0.568588 | 3_3:+13551698 | None:intergenic |
| AGAAGGGGAAGGAAAACCTA+TGG | 0.570057 | 3_3:+13547877 | None:intergenic |
| ACTGGTGTAACCATACCTGC+TGG | 0.577641 | 3_3:-13550507 | Msa0443050:CDS |
| AAAAGCTCCTCATCCAGAGA+AGG | 0.578008 | 3_3:+13547860 | None:intergenic |
| TTGTAGTGAGAGTTCCAACC+CGG | 0.578455 | 3_3:-13551354 | Msa0443050:CDS |
| CCCAACGCAAGCATGTGTAC+CGG | 0.578552 | 3_3:+13548842 | None:intergenic |
| AGAGATGCTTATAAAGGCTG+AGG | 0.579962 | 3_3:-13552722 | Msa0443050:CDS |
| ACTGACACCAGAAGCTTCGT+AGG | 0.582455 | 3_3:+13552766 | None:intergenic |
| GTCAGAGGAAGCATTAGTTG+CGG | 0.588840 | 3_3:-13551650 | Msa0443050:CDS |
| GTGTACCGGATCCGAAAGGA+AGG | 0.588964 | 3_3:+13548856 | None:intergenic |
| GGCTGATCTGAATCCTCTGA+AGG | 0.595422 | 3_3:-13551711 | Msa0443050:CDS |
| GAAGCTGTCTCCGAGGAATG+TGG | 0.601876 | 3_3:+13551589 | None:intergenic |
| GACAAGATTAGTCAATACAT+TGG | 0.611955 | 3_3:+13551169 | None:intergenic |
| TTTGTGAATCCGGATTATGG+TGG | 0.616792 | 3_3:+13548244 | None:intergenic |
| ACAACCAGTACAGCTCCAGC+AGG | 0.617716 | 3_3:+13550492 | None:intergenic |
| TGAAGAAGGAAGTCCAGGAA+TGG | 0.619436 | 3_3:+13553878 | None:intergenic |
| GGTATATATATATTCCTGCA+AGG | 0.626890 | 3_3:-13547902 | Msa0443050:three_prime_UTR |
| AAGCTCCTCATCCAGAGAAG+GGG | 0.632277 | 3_3:+13547862 | None:intergenic |
| GCTCATTGTGGTCATGTGGT+AGG | 0.637857 | 3_3:-13548036 | Msa0443050:three_prime_UTR |
| TCCTCATCCAGAGAAGGGGA+AGG | 0.637873 | 3_3:+13547866 | None:intergenic |
| GAACCAAAGATTGATGAAGA+CGG | 0.642532 | 3_3:-13551732 | Msa0443050:CDS |
| ATGGCTTGAAGCCAACACTA+GGG | 0.643816 | 3_3:+13547959 | None:intergenic |
| ATACGAGGAATTACTTATGA+CGG | 0.648216 | 3_3:-13551543 | Msa0443050:CDS |
| AGAAAGATGCCTTCAATTGG+GGG | 0.649874 | 3_3:-13550452 | Msa0443050:CDS |
| ACACAATGCCGTTCTAATGG+CGG | 0.652270 | 3_3:-13551311 | Msa0443050:CDS |
| CAAATATCAATGGCTCATTG+TGG | 0.662590 | 3_3:-13548048 | Msa0443050:three_prime_UTR |
| GCATGTGTACCGGATCCGAA+AGG | 0.676456 | 3_3:+13548852 | None:intergenic |
| ATACAGATAAGGCTCAACAC+AGG | 0.691238 | 3_3:-13548309 | Msa0443050:intron |
| AATGGCTCATTGTGGTCATG+TGG | 0.691427 | 3_3:-13548040 | Msa0443050:three_prime_UTR |
| AATTCTAAGGAAGAACCTTG+TGG | 0.695518 | 3_3:-13551245 | Msa0443050:CDS |
| ATGCCAAGAAGCTGTCTCCG+AGG | 0.701032 | 3_3:+13551582 | None:intergenic |
| GCCGAAGGCTGCAATATACG+AGG | 0.703655 | 3_3:-13551558 | Msa0443050:CDS |
| GAAGATGAATCAGTGAAACA+TGG | 0.726420 | 3_3:+13554125 | None:intergenic |
| ACACGCATGATGTTACCACA+AGG | 0.736475 | 3_3:+13551230 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTATAAGTTTATTTTT+AGG | - | chr3_3:13552802-13552821 | Msa0443050:CDS | 10.0% |
| !! | TAAGAAAATGAAAATGATTT+AGG | - | chr3_3:13548308-13548327 | Msa0443050:intron | 15.0% |
| !! | AAGAAAATGAAAATGATTTA+GGG | - | chr3_3:13548309-13548328 | Msa0443050:intron | 15.0% |
| !! | AACAACAAAAAAAAAAAACA+AGG | + | chr3_3:13548800-13548819 | None:intergenic | 15.0% |
| !! | CAATACTAATAATACTAAAA+TGG | + | chr3_3:13549071-13549090 | None:intergenic | 15.0% |
| !!! | ATTTCATTTAATTTGTCTTT+AGG | - | chr3_3:13550219-13550238 | Msa0443050:intron | 15.0% |
| !!! | AACAAATTTTAATTAAGAAC+TGG | + | chr3_3:13550920-13550939 | None:intergenic | 15.0% |
| !!! | TTCTTAATTAAAATTTGTTC+CGG | - | chr3_3:13550921-13550940 | Msa0443050:intron | 15.0% |
| !! | AAATTTAAACTAAGATTGAA+GGG | + | chr3_3:13552566-13552585 | None:intergenic | 15.0% |
| !! | AAAATTTAAACTAAGATTGA+AGG | + | chr3_3:13552567-13552586 | None:intergenic | 15.0% |
| !!! | AACATTTTATTACAGTTTTT+AGG | + | chr3_3:13553438-13553457 | None:intergenic | 15.0% |
| !! | TCATGATTGTATTAAGAATT+TGG | - | chr3_3:13548820-13548839 | Msa0443050:CDS | 20.0% |
| !!! | TTAGTATTATTAGTATTGAC+AGG | - | chr3_3:13549073-13549092 | Msa0443050:intron | 20.0% |
| !!! | GATTATATGAGAAATTTTGT+TGG | + | chr3_3:13549400-13549419 | None:intergenic | 20.0% |
| !! | AATAGAGTAAATATCCAAAT+TGG | - | chr3_3:13549667-13549686 | Msa0443050:intron | 20.0% |
| !!! | TGACATTATTCACTTAATTT+TGG | - | chr3_3:13549708-13549727 | Msa0443050:intron | 20.0% |
| !! | TATGTATTTCAAATATCTGT+AGG | - | chr3_3:13550137-13550156 | Msa0443050:intron | 20.0% |
| !!! | TAGAATTTTGTTGATCATTA+AGG | + | chr3_3:13550750-13550769 | None:intergenic | 20.0% |
| !! | TAATGATCAACAAAATTCTA+AGG | - | chr3_3:13550750-13550769 | Msa0443050:intron | 20.0% |
| !! | GAAACAAAAATAAAATGATC+CGG | + | chr3_3:13550943-13550962 | None:intergenic | 20.0% |
| !! | ATATTAAATTGCAAATCTTG+AGG | + | chr3_3:13551690-13551709 | None:intergenic | 20.0% |
| !!! | ACTTGATGATAAAAATTCTA+TGG | + | chr3_3:13551880-13551899 | None:intergenic | 20.0% |
| !! | AATAATAGAATAGTGTACTA+CGG | - | chr3_3:13552261-13552280 | Msa0443050:intron | 20.0% |
| !! | AATTTAAACTAAGATTGAAG+GGG | + | chr3_3:13552565-13552584 | None:intergenic | 20.0% |
| !!! | ATCTTAGTTTAAATTTTGTG+TGG | - | chr3_3:13552570-13552589 | Msa0443050:intron | 20.0% |
| !!! | ATTTTTAGGTACATAACTTA+AGG | - | chr3_3:13552816-13552835 | Msa0443050:CDS | 20.0% |
| !! | AAATAAGGGTAAAAGAAAAT+GGG | + | chr3_3:13552903-13552922 | None:intergenic | 20.0% |
| !! | AAAATAAGGGTAAAAGAAAA+TGG | + | chr3_3:13552904-13552923 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTTACCCTTATTT+TGG | - | chr3_3:13552903-13552922 | Msa0443050:intron | 20.0% |
| !! | AATGTTGAATTTGTCATATA+AGG | - | chr3_3:13553344-13553363 | Msa0443050:intron | 20.0% |
| !!! | TAACATTATTTAGGATATAG+TGG | - | chr3_3:13553654-13553673 | Msa0443050:intron | 20.0% |
| !! | GTTAGATTTATATACAGATA+AGG | - | chr3_3:13553688-13553707 | Msa0443050:intron | 20.0% |
| !! | ATACTATGTATAGATAAAGT+TGG | - | chr3_3:13553832-13553851 | Msa0443050:CDS | 20.0% |
| !!! | GTTGTTTGTTTTTTTGAGTT+TGG | + | chr3_3:13547774-13547793 | None:intergenic | 25.0% |
| !!! | TGAAGAAGAAGATTTGATTT+TGG | + | chr3_3:13547953-13547972 | None:intergenic | 25.0% |
| !! | ATTACCAGTGAAATTTTCTT+TGG | + | chr3_3:13548184-13548203 | None:intergenic | 25.0% |
| !! | AAAATGATTTAGGGTCTATT+TGG | - | chr3_3:13548318-13548337 | Msa0443050:intron | 25.0% |
| ! | TTACAAAATCACGTTGAAAA+AGG | + | chr3_3:13548420-13548439 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAATTAG+TGG | - | chr3_3:13548553-13548572 | Msa0443050:intron | 25.0% |
| !! | TACAAATTTTCATGTGTAGA+TGG | - | chr3_3:13548587-13548606 | Msa0443050:intron | 25.0% |
| !! | ACAAATTTTCATGTGTAGAT+GGG | - | chr3_3:13548588-13548607 | Msa0443050:intron | 25.0% |
| ! | TTACAAAATCCAGATGTATT+AGG | + | chr3_3:13548619-13548638 | None:intergenic | 25.0% |
| !! | ATCTGGATTTTGTAATCAAT+TGG | - | chr3_3:13548624-13548643 | Msa0443050:intron | 25.0% |
| !! | TCTGGATTTTGTAATCAATT+GGG | - | chr3_3:13548625-13548644 | Msa0443050:intron | 25.0% |
| !! | GTGTTTTGCATATATATGTA+AGG | - | chr3_3:13548647-13548666 | Msa0443050:intron | 25.0% |
| ! | AACTTCCAATTTAAACCATT+CGG | + | chr3_3:13548769-13548788 | None:intergenic | 25.0% |
| !! | TAGCATTATCAATTTGTTTG+TGG | - | chr3_3:13548899-13548918 | Msa0443050:CDS | 25.0% |
| !! | ATTATCAATTTGTTTGTGGT+GGG | - | chr3_3:13548903-13548922 | Msa0443050:CDS | 25.0% |
| ! | AATTCAAGAGATGCTTATAA+AGG | - | chr3_3:13549280-13549299 | Msa0443050:intron | 25.0% |
| ! | AATTATTTAGCAGTACTCAA+TGG | - | chr3_3:13549587-13549606 | Msa0443050:intron | 25.0% |
| !! | CATTATTCACTTAATTTTGG+AGG | - | chr3_3:13549711-13549730 | Msa0443050:intron | 25.0% |
| ! | GGTTTATATGATTCACTAAT+CGG | - | chr3_3:13549925-13549944 | Msa0443050:intron | 25.0% |
| !! | TTGCAAATTTAGAATGTTTG+TGG | - | chr3_3:13549954-13549973 | Msa0443050:intron | 25.0% |
| ! | GTAGTTAATCAGAAATCAAA+AGG | + | chr3_3:13550096-13550115 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTCAGAACAAGT+TGG | - | chr3_3:13550952-13550971 | Msa0443050:intron | 25.0% |
| ! | TTAAGTGTACTTATATGTGT+CGG | + | chr3_3:13551071-13551090 | None:intergenic | 25.0% |
| ! | TCTTAAATTATTAGCAGTGT+CGG | - | chr3_3:13551102-13551121 | Msa0443050:intron | 25.0% |
| !!! | TTATGTTCATATGTTTTTGC+AGG | - | chr3_3:13551187-13551206 | Msa0443050:CDS | 25.0% |
| ! | GGTTTATTCAGAGATTATTA+TGG | - | chr3_3:13551208-13551227 | Msa0443050:CDS | 25.0% |
| ! | ATTCAGAGATTATTATGGTT+AGG | - | chr3_3:13551213-13551232 | Msa0443050:CDS | 25.0% |
| ! | TATTTATCTGTTCTACACAA+AGG | - | chr3_3:13551393-13551412 | Msa0443050:CDS | 25.0% |
| ! | TTATATTTACGTCTTCGAAT+TGG | - | chr3_3:13551422-13551441 | Msa0443050:CDS | 25.0% |
| ! | TACAAGGATAACAATAATGA+AGG | + | chr3_3:13551463-13551482 | None:intergenic | 25.0% |
| ! | TTGTAATGTTTGACAGAAAT+CGG | + | chr3_3:13551608-13551627 | None:intergenic | 25.0% |
| ! | TCAAACATTACAAAAGAATC+AGG | - | chr3_3:13551615-13551634 | Msa0443050:CDS | 25.0% |
| ! | CAACAACTTAAATGTGTAAT+CGG | + | chr3_3:13551851-13551870 | None:intergenic | 25.0% |
| ! | GAGAGATAATGAATGAAAAT+GGG | - | chr3_3:13552011-13552030 | Msa0443050:intron | 25.0% |
| ! | ATGGTGTATCTCAAAAATAA+GGG | - | chr3_3:13552065-13552084 | Msa0443050:intron | 25.0% |
| ! | AAAGTGGGATATATAAAGAA+AGG | - | chr3_3:13552367-13552386 | Msa0443050:intron | 25.0% |
| ! | AAGTGGGATATATAAAGAAA+GGG | - | chr3_3:13552368-13552387 | Msa0443050:intron | 25.0% |
| ! | ACAACAACAAATTATGATGT+AGG | + | chr3_3:13552521-13552540 | None:intergenic | 25.0% |
| !!! | TACATCATAATTTGTTGTTG+TGG | - | chr3_3:13552520-13552539 | Msa0443050:intron | 25.0% |
| !!! | ACATCATAATTTGTTGTTGT+GGG | - | chr3_3:13552521-13552540 | Msa0443050:intron | 25.0% |
| ! | ATTTAAACTAAGATTGAAGG+GGG | + | chr3_3:13552564-13552583 | None:intergenic | 25.0% |
| !!! | ATGTTTAACTTGCTTAATCA+TGG | - | chr3_3:13552761-13552780 | Msa0443050:CDS | 25.0% |
| ! | TAACATGACTTTAACATAAG+GGG | + | chr3_3:13552845-13552864 | None:intergenic | 25.0% |
| ! | CTAACATGACTTTAACATAA+GGG | + | chr3_3:13552846-13552865 | None:intergenic | 25.0% |
| ! | AATAAGGGTAAAAGAAAATG+GGG | + | chr3_3:13552902-13552921 | None:intergenic | 25.0% |
| !! | CTGTCAATATCAGAAATTTT+CGG | + | chr3_3:13553018-13553037 | None:intergenic | 25.0% |
| ! | ATCCATCACTAATCTTATAA+TGG | - | chr3_3:13553047-13553066 | Msa0443050:intron | 25.0% |
| ! | TACCATTATAAGATTAGTGA+TGG | + | chr3_3:13553052-13553071 | None:intergenic | 25.0% |
| ! | CTTATAATGGTATTTCTTAC+AGG | - | chr3_3:13553060-13553079 | Msa0443050:intron | 25.0% |
| ! | ATCATTACTCAAGAAATATC+AGG | - | chr3_3:13553227-13553246 | Msa0443050:intron | 25.0% |
| ! | GAACAATAATAACAGTTCAT+AGG | + | chr3_3:13553258-13553277 | None:intergenic | 25.0% |
| ! | TGAATTTGTCATATAAGGAA+AGG | - | chr3_3:13553349-13553368 | Msa0443050:intron | 25.0% |
| !! | ATTCACTTTGCTATAGATAT+AGG | + | chr3_3:13553535-13553554 | None:intergenic | 25.0% |
| ! | TGAAGAATGAAATAAGTAAC+TGG | - | chr3_3:13553590-13553609 | Msa0443050:intron | 25.0% |
| ! | TGGATGTTGTAACATTATTT+AGG | - | chr3_3:13553645-13553664 | Msa0443050:intron | 25.0% |
| ! | ACAAAAGTTATTTGTGAATC+CGG | + | chr3_3:13553777-13553796 | None:intergenic | 25.0% |
| !! | ACAAATAACTTTTGTGAGAA+GGG | - | chr3_3:13553782-13553801 | Msa0443050:intron | 25.0% |
| ! | AAGCTTTACTCAAATATCAA+TGG | - | chr3_3:13553950-13553969 | Msa0443050:CDS | 25.0% |
| !!! | GTTTGTTTTTTTGAGTTTGG+TGG | + | chr3_3:13547771-13547790 | None:intergenic | 30.0% |
| TCAGTTCCAAATACTTTCAT+TGG | - | chr3_3:13547910-13547929 | Msa0443050:three_prime_UTR | 30.0% | |
| !! | AGAAGACCAATGAAAGTATT+TGG | + | chr3_3:13547919-13547938 | None:intergenic | 30.0% |
| ! | GAGAATTCAATGCTTTTCTT+TGG | - | chr3_3:13548031-13548050 | Msa0443050:three_prime_UTR | 30.0% |
| GACTTTATAGTGTCCAAAAA+AGG | + | chr3_3:13548157-13548176 | None:intergenic | 30.0% | |
| ! | TGTGATATTTTTCGTTGCAA+AGG | - | chr3_3:13548688-13548707 | Msa0443050:intron | 30.0% |
| TAAGTCCGAATGGTTTAAAT+TGG | - | chr3_3:13548761-13548780 | Msa0443050:intron | 30.0% | |
| ! | CATTATCAATTTGTTTGTGG+TGG | - | chr3_3:13548902-13548921 | Msa0443050:CDS | 30.0% |
| ! | TTATCAATTTGTTTGTGGTG+GGG | - | chr3_3:13548904-13548923 | Msa0443050:CDS | 30.0% |
| ATGAATACTATCATAGTCAG+AGG | - | chr3_3:13548941-13548960 | Msa0443050:intron | 30.0% | |
| !! | TTATTAGTATTGACAGGTCA+AGG | - | chr3_3:13549079-13549098 | Msa0443050:intron | 30.0% |
| TCAGAATCACATGAGAATTA+TGG | - | chr3_3:13549194-13549213 | Msa0443050:intron | 30.0% | |
| ! | TAAGTACCTTTTCATAGGAA+GGG | + | chr3_3:13549373-13549392 | None:intergenic | 30.0% |
| ! | TTAAGTACCTTTTCATAGGA+AGG | + | chr3_3:13549374-13549393 | None:intergenic | 30.0% |
| GCACAACAAATTACAAGATA+AGG | + | chr3_3:13549433-13549452 | None:intergenic | 30.0% | |
| ! | GACATAGATAAATTTTCCTC+CGG | + | chr3_3:13549522-13549541 | None:intergenic | 30.0% |
| !!! | TATGTCTGTTTTGATGTACT+TGG | - | chr3_3:13549564-13549583 | Msa0443050:intron | 30.0% |
| TAGTGAACATGATTATCATC+GGG | + | chr3_3:13549879-13549898 | None:intergenic | 30.0% | |
| CTAGTGAACATGATTATCAT+CGG | + | chr3_3:13549880-13549899 | None:intergenic | 30.0% | |
| ! | AATGATCAGTGTTTCTGATT+AGG | - | chr3_3:13549904-13549923 | Msa0443050:intron | 30.0% |
| CCAAGCAACTATAGTTAAAA+TGG | + | chr3_3:13550198-13550217 | None:intergenic | 30.0% | |
| !!! | CCATTTTAACTATAGTTGCT+TGG | - | chr3_3:13550195-13550214 | Msa0443050:intron | 30.0% |
| ! | CCAATAATTCTCTTCTCTTT+TGG | + | chr3_3:13550246-13550265 | None:intergenic | 30.0% |
| CCAAAAGAGAAGAGAATTAT+TGG | - | chr3_3:13550243-13550262 | Msa0443050:intron | 30.0% | |
| CATATGGCTTTCACATTAAT+GGG | - | chr3_3:13550394-13550413 | Msa0443050:CDS | 30.0% | |
| ATACGAGGAATTACTTATGA+CGG | - | chr3_3:13550465-13550484 | Msa0443050:CDS | 30.0% | |
| !! | TACAAACATTTTGATCGATG+TGG | + | chr3_3:13550639-13550658 | None:intergenic | 30.0% |
| ! | GACAAGATTAGTCAATACAT+TGG | + | chr3_3:13550842-13550861 | None:intergenic | 30.0% |
| !! | TCTTCATGCTCATATTTTGA+TGG | + | chr3_3:13551245-13551264 | None:intergenic | 30.0% |
| ATGAGCATGAAGATGTTTAT+AGG | - | chr3_3:13551252-13551271 | Msa0443050:CDS | 30.0% | |
| TAAATTGTAGCCAATAGCAA+AGG | + | chr3_3:13551281-13551300 | None:intergenic | 30.0% | |
| TGAGAAAATAGGCAAGATAA+AGG | - | chr3_3:13551361-13551380 | Msa0443050:CDS | 30.0% | |
| AATAGGCAAGATAAAGGTTA+TGG | - | chr3_3:13551367-13551386 | Msa0443050:CDS | 30.0% | |
| ! | ACCATTTGTTGAAGCAATTA+TGG | - | chr3_3:13551772-13551791 | Msa0443050:intron | 30.0% |
| ACCATAATTGCTTCAACAAA+TGG | + | chr3_3:13551776-13551795 | None:intergenic | 30.0% | |
| TAACTAGTGAAGAGTTTGAA+CGG | - | chr3_3:13551925-13551944 | Msa0443050:intron | 30.0% | |
| GGAGAGATAATGAATGAAAA+TGG | - | chr3_3:13552010-13552029 | Msa0443050:intron | 30.0% | |
| !!! | ATTTTTGAGATACACCATGA+AGG | + | chr3_3:13552063-13552082 | None:intergenic | 30.0% |
| CATGGTGTATCTCAAAAATA+AGG | - | chr3_3:13552064-13552083 | Msa0443050:intron | 30.0% | |
| CATTGAATTACATACTTACC+TGG | - | chr3_3:13552396-13552415 | Msa0443050:intron | 30.0% | |
| AATTACATACTTACCTGGAT+GGG | - | chr3_3:13552401-13552420 | Msa0443050:intron | 30.0% | |
| !! | CATCATAATTTGTTGTTGTG+GGG | - | chr3_3:13552522-13552541 | Msa0443050:intron | 30.0% |
| !! | ATCATAATTTGTTGTTGTGG+GGG | - | chr3_3:13552523-13552542 | Msa0443050:intron | 30.0% |
| TGTTTGTCCTGAAAAAAATC+CGG | - | chr3_3:13552714-13552733 | Msa0443050:CDS | 30.0% | |
| CCTAACATGACTTTAACATA+AGG | + | chr3_3:13552847-13552866 | None:intergenic | 30.0% | |
| CCTTATGTTAAAGTCATGTT+AGG | - | chr3_3:13552844-13552863 | Msa0443050:intron | 30.0% | |
| !!! | TTTTACCCTTATTTTGGTTG+TGG | - | chr3_3:13552909-13552928 | Msa0443050:intron | 30.0% |
| ACATACCACAACCAAAATAA+GGG | + | chr3_3:13552917-13552936 | None:intergenic | 30.0% | |
| AACATACCACAACCAAAATA+AGG | + | chr3_3:13552918-13552937 | None:intergenic | 30.0% | |
| AAAGAAGATTGTGTGTGATT+TGG | - | chr3_3:13552947-13552966 | Msa0443050:intron | 30.0% | |
| AAGAAGATTGTGTGTGATTT+GGG | - | chr3_3:13552948-13552967 | Msa0443050:intron | 30.0% | |
| ACATTACATTATCCATTCCA+TGG | + | chr3_3:13553402-13553421 | None:intergenic | 30.0% | |
| !! | TTTGCTATTCCATAATTCAG+TGG | - | chr3_3:13553625-13553644 | Msa0443050:intron | 30.0% |
| TTACAACATCCACTGAATTA+TGG | + | chr3_3:13553637-13553656 | None:intergenic | 30.0% | |
| !!! | ACAAGATGATTTTTCGAGAT+TGG | + | chr3_3:13553744-13553763 | None:intergenic | 30.0% |
| TTATTTGTGAATCCGGATTA+TGG | + | chr3_3:13553770-13553789 | None:intergenic | 30.0% | |
| ! | CACAAATAACTTTTGTGAGA+AGG | - | chr3_3:13553781-13553800 | Msa0443050:intron | 30.0% |
| TGCGTGAAGAAAACTATAAA+GGG | + | chr3_3:13553899-13553918 | None:intergenic | 30.0% | |
| ATGCGTGAAGAAAACTATAA+AGG | + | chr3_3:13553900-13553919 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTTTCCAAGATGAA+AGG | - | chr3_3:13553925-13553944 | Msa0443050:CDS | 30.0% |
| !!! | CCTTTTTTTCCAAGATGAAA+GGG | - | chr3_3:13553926-13553945 | Msa0443050:CDS | 30.0% |
| !!! | CTTTTTTTCCAAGATGAAAG+GGG | - | chr3_3:13553927-13553946 | Msa0443050:CDS | 30.0% |
| ACTTACAAAAACATGTACCA+TGG | + | chr3_3:13554071-13554090 | None:intergenic | 30.0% | |
| !!! | TGTAAGTTTTTTAAGCACAC+AGG | - | chr3_3:13554084-13554103 | Msa0443050:CDS | 30.0% |
| !!! | GTAAGTTTTTTAAGCACACA+GGG | - | chr3_3:13554085-13554104 | Msa0443050:CDS | 30.0% |
| GGTATATATATATTCCTGCA+AGG | - | chr3_3:13554106-13554125 | Msa0443050:CDS | 30.0% | |
| !!! | TGTTTTTTTGAGTTTGGTGG+CGG | + | chr3_3:13547768-13547787 | None:intergenic | 35.0% |
| GAAGATGAATCAGTGAAACA+TGG | + | chr3_3:13547886-13547905 | None:intergenic | 35.0% | |
| ! | AATTCTCTAAGAAGCTCAGA+AGG | + | chr3_3:13548003-13548022 | None:intergenic | 35.0% |
| TATAAAGCTAGAACCATTCC+TGG | - | chr3_3:13548117-13548136 | Msa0443050:three_prime_UTR | 35.0% | |
| !!! | CTTCCTTCTTCATCCTTTTT+TGG | - | chr3_3:13548141-13548160 | Msa0443050:three_prime_UTR | 35.0% |
| TGTCCAAAAAAGGATGAAGA+AGG | + | chr3_3:13548147-13548166 | None:intergenic | 35.0% | |
| !! | CAGTGAAATTTTCTTTGGAG+AGG | + | chr3_3:13548179-13548198 | None:intergenic | 35.0% |
| CTCTCCAAAGAAAATTTCAC+TGG | - | chr3_3:13548177-13548196 | Msa0443050:three_prime_UTR | 35.0% | |
| AGCACACTTATACCACTAAT+TGG | + | chr3_3:13548568-13548587 | None:intergenic | 35.0% | |
| ACACTGACAATTCAGGATAA+TGG | - | chr3_3:13548971-13548990 | Msa0443050:intron | 35.0% | |
| TTGAATGTAACCACATGTGT+CGG | + | chr3_3:13549043-13549062 | None:intergenic | 35.0% | |
| GTTAGTGCTTCATAGTTCAT+AGG | - | chr3_3:13549113-13549132 | Msa0443050:intron | 35.0% | |
| CAACACATCTGGAAATCAAA+AGG | + | chr3_3:13549174-13549193 | None:intergenic | 35.0% | |
| TGAAATGCTTTCCCAGTAAA+AGG | + | chr3_3:13549320-13549339 | None:intergenic | 35.0% | |
| ! | AAAGCATTTCATCTAGCCTT+TGG | - | chr3_3:13549329-13549348 | Msa0443050:intron | 35.0% |
| ! | AAGTACCTTTTCATAGGAAG+GGG | + | chr3_3:13549372-13549391 | None:intergenic | 35.0% |
| ! | GCAGTTAAGTACCTTTTCAT+AGG | + | chr3_3:13549378-13549397 | None:intergenic | 35.0% |
| TAAATATCCAAATTGGTCCC+TGG | - | chr3_3:13549674-13549693 | Msa0443050:intron | 35.0% | |
| GAACCAAAGATTGATGAAGA+CGG | - | chr3_3:13550276-13550295 | Msa0443050:intron | 35.0% | |
| ATAGAAAACATCAGAGTCAG+AGG | - | chr3_3:13550343-13550362 | Msa0443050:intron | 35.0% | |
| GCATATGGCTTTCACATTAA+TGG | - | chr3_3:13550393-13550412 | Msa0443050:intron | 35.0% | |
| CCAAAACGGAGTAACATTAT+AGG | + | chr3_3:13550518-13550537 | None:intergenic | 35.0% | |
| ! | CCTATAATGTTACTCCGTTT+TGG | - | chr3_3:13550515-13550534 | Msa0443050:CDS | 35.0% |
| CAAAATCCTCGTTTCCAAAA+CGG | + | chr3_3:13550532-13550551 | None:intergenic | 35.0% | |
| ! | AGAAAAGGCTGCAAGATTTT+AGG | - | chr3_3:13550613-13550632 | Msa0443050:intron | 35.0% |
| ! | CACGAAAGAAATGGCAATTT+TGG | + | chr3_3:13550726-13550745 | None:intergenic | 35.0% |
| CATTAAGGTCACGAAAGAAA+TGG | + | chr3_3:13550735-13550754 | None:intergenic | 35.0% | |
| ! | AATTCTAAGGAAGAACCTTG+TGG | - | chr3_3:13550763-13550782 | Msa0443050:intron | 35.0% |
| GACTAATCTTGTCATGCATT+TGG | - | chr3_3:13550849-13550868 | Msa0443050:intron | 35.0% | |
| TGTCATGCATTTGGAAATAC+AGG | - | chr3_3:13550858-13550877 | Msa0443050:intron | 35.0% | |
| GCATTTGGAAATACAGGATA+AGG | - | chr3_3:13550864-13550883 | Msa0443050:intron | 35.0% | |
| ! | TTATAGGATGCCTTTGCTAT+TGG | - | chr3_3:13551268-13551287 | Msa0443050:CDS | 35.0% |
| ATGAAACACGGTGAGAAAAT+AGG | - | chr3_3:13551350-13551369 | Msa0443050:CDS | 35.0% | |
| TCTGTTCTACACAAAGGTTA+TGG | - | chr3_3:13551399-13551418 | Msa0443050:CDS | 35.0% | |
| TACAGAAAGATGCCTTCAAT+TGG | - | chr3_3:13551553-13551572 | Msa0443050:CDS | 35.0% | |
| ACAGAAAGATGCCTTCAATT+GGG | - | chr3_3:13551554-13551573 | Msa0443050:CDS | 35.0% | |
| ATGTTTGACAGAAATCGGTA+TGG | + | chr3_3:13551603-13551622 | None:intergenic | 35.0% | |
| TCAATCCTACAATATCTCTC+AGG | + | chr3_3:13551802-13551821 | None:intergenic | 35.0% | |
| ! | CAACATAGCAATGTTGTTTG+TGG | - | chr3_3:13551822-13551841 | Msa0443050:intron | 35.0% |
| CAACTTAAATGTGTAATCGG+AGG | + | chr3_3:13551848-13551867 | None:intergenic | 35.0% | |
| CAAGATCTTAGATAACAGTG+AGG | - | chr3_3:13551989-13552008 | Msa0443050:intron | 35.0% | |
| GTGCAGAACAAGATGATTTA+TGG | - | chr3_3:13552094-13552113 | Msa0443050:intron | 35.0% | |
| !! | AGTTGTAGTTTGTTCTGTTG+TGG | + | chr3_3:13552188-13552207 | None:intergenic | 35.0% |
| GAATTACATACTTACCTGGA+TGG | - | chr3_3:13552400-13552419 | Msa0443050:intron | 35.0% | |
| ATTACATACTTACCTGGATG+GGG | - | chr3_3:13552402-13552421 | Msa0443050:intron | 35.0% | |
| ACTGAATGCCATTGCAAAAT+GGG | + | chr3_3:13552680-13552699 | None:intergenic | 35.0% | |
| TACTGAATGCCATTGCAAAA+TGG | + | chr3_3:13552681-13552700 | None:intergenic | 35.0% | |
| ! | CAGAAATTTTCGGACTCTAA+AGG | + | chr3_3:13553008-13553027 | None:intergenic | 35.0% |
| TCTGAAGAACTACTTGACTA+TGG | - | chr3_3:13553084-13553103 | Msa0443050:intron | 35.0% | |
| TTGAAGAGAATAGAAAGCCA+TGG | - | chr3_3:13553382-13553401 | Msa0443050:intron | 35.0% | |
| ! | GTTAGTCTATGTGAACGAAA+TGG | - | chr3_3:13553455-13553474 | Msa0443050:intron | 35.0% |
| TTAAGCATGATGTGAAACAG+TGG | - | chr3_3:13553485-13553504 | Msa0443050:intron | 35.0% | |
| ! | TGTCTTTCTGTTTCTTTCAC+TGG | + | chr3_3:13553809-13553828 | None:intergenic | 35.0% |
| GTAATTCAAGTCAATGATGC+AGG | - | chr3_3:13553859-13553878 | Msa0443050:CDS | 35.0% | |
| CCCTTTCATCTTGGAAAAAA+AGG | + | chr3_3:13553929-13553948 | None:intergenic | 35.0% | |
| CAAATATCAATGGCTCATTG+TGG | - | chr3_3:13553960-13553979 | Msa0443050:CDS | 35.0% | |
| GGCAGTGATTAAAAATAGGA+AGG | + | chr3_3:13554031-13554050 | None:intergenic | 35.0% | |
| CTAGGGCAGTGATTAAAAAT+AGG | + | chr3_3:13554035-13554054 | None:intergenic | 35.0% | |
| ! | TCTTGTTATCACCACACTCT+TGG | - | chr3_3:13548062-13548081 | Msa0443050:three_prime_UTR | 40.0% |
| ! | GAGTCTTTTAACCAAGAGTG+TGG | + | chr3_3:13548076-13548095 | None:intergenic | 40.0% |
| TGGGTTTAGCCTAATACATC+TGG | - | chr3_3:13548607-13548626 | Msa0443050:intron | 40.0% | |
| GTTTGTGCTATAAGTCCGAA+TGG | - | chr3_3:13548751-13548770 | Msa0443050:intron | 40.0% | |
| CTATGCAACACTGACAATTC+AGG | - | chr3_3:13548964-13548983 | Msa0443050:intron | 40.0% | |
| TGTGATTCTGACAACACATC+TGG | + | chr3_3:13549185-13549204 | None:intergenic | 40.0% | |
| ATGGACCAATTGTTAAGCTG+TGG | - | chr3_3:13549213-13549232 | Msa0443050:intron | 40.0% | |
| CCTAACCACAGCTTAACAAT+TGG | + | chr3_3:13549221-13549240 | None:intergenic | 40.0% | |
| CCAATTGTTAAGCTGTGGTT+AGG | - | chr3_3:13549218-13549237 | Msa0443050:intron | 40.0% | |
| AGCATCTCTTGAATTAGCAC+TGG | + | chr3_3:13549275-13549294 | None:intergenic | 40.0% | |
| AGAGATGCTTATAAAGGCTG+AGG | - | chr3_3:13549286-13549305 | Msa0443050:intron | 40.0% | |
| ! | AGGATAAGCTGCCTTTTACT+GGG | - | chr3_3:13549306-13549325 | Msa0443050:intron | 40.0% |
| AAAAAGGCTTGAATGGCCAA+AGG | + | chr3_3:13549348-13549367 | None:intergenic | 40.0% | |
| TTTCATAGGAAGGGGCAAAA+AGG | + | chr3_3:13549364-13549383 | None:intergenic | 40.0% | |
| ! | TTTTGCCCCTTCCTATGAAA+AGG | - | chr3_3:13549364-13549383 | Msa0443050:intron | 40.0% |
| TTCATTGTTTCCAGCAATGC+CGG | - | chr3_3:13549500-13549519 | Msa0443050:intron | 40.0% | |
| AGCCAAATGCCTTGGTTTAA+GGG | + | chr3_3:13549613-13549632 | None:intergenic | 40.0% | |
| TAGCCAAATGCCTTGGTTTA+AGG | + | chr3_3:13549614-13549633 | None:intergenic | 40.0% | |
| TGGTAATTAGCCAAATGCCT+TGG | + | chr3_3:13549621-13549640 | None:intergenic | 40.0% | |
| ACACTCTTCTTCAGTTCAAC+TGG | + | chr3_3:13549641-13549660 | None:intergenic | 40.0% | |
| GGGAGAAGAAAACAATCTGT+GGG | + | chr3_3:13549859-13549878 | None:intergenic | 40.0% | |
| ATAAAGTCTGCAACCTTCAG+AGG | + | chr3_3:13550313-13550332 | None:intergenic | 40.0% | |
| ! | TCGCTAAAGATACCTGCTTT+TGG | - | chr3_3:13550488-13550507 | Msa0443050:CDS | 40.0% |
| !! | CGCTAAAGATACCTGCTTTT+GGG | - | chr3_3:13550489-13550508 | Msa0443050:CDS | 40.0% |
| ATTATAGGAAGCCCAAAAGC+AGG | + | chr3_3:13550503-13550522 | None:intergenic | 40.0% | |
| !!! | CGTTTTGGAAACGAGGATTT+TGG | - | chr3_3:13550530-13550549 | Msa0443050:intron | 40.0% |
| ATCCTTCAACATCGCAGAAA+AGG | - | chr3_3:13550598-13550617 | Msa0443050:intron | 40.0% | |
| AGTACACAATGCCGTTCTAA+TGG | - | chr3_3:13550694-13550713 | Msa0443050:intron | 40.0% | |
| ! | TTTGGAATCCGCCATTAGAA+CGG | + | chr3_3:13550708-13550727 | None:intergenic | 40.0% |
| ! | GTACTTATATGTGTCGGTGT+CGG | + | chr3_3:13551065-13551084 | None:intergenic | 40.0% |
| TGACCTATGAAGCACAGATA+CGG | + | chr3_3:13551163-13551182 | None:intergenic | 40.0% | |
| !! | CAGAGGTGTTCTATGAAACA+CGG | - | chr3_3:13551338-13551357 | Msa0443050:CDS | 40.0% |
| CGAATCTCAAGTCTGATACA+AGG | + | chr3_3:13551479-13551498 | None:intergenic | 40.0% | |
| TCTTTCTGTACCAATGGAAC+AGG | + | chr3_3:13551543-13551562 | None:intergenic | 40.0% | |
| ! | AAGGCATCTTTCTGTACCAA+TGG | + | chr3_3:13551549-13551568 | None:intergenic | 40.0% |
| CAGAAAGATGCCTTCAATTG+GGG | - | chr3_3:13551555-13551574 | Msa0443050:CDS | 40.0% | |
| AGAAAGATGCCTTCAATTGG+GGG | - | chr3_3:13551556-13551575 | Msa0443050:CDS | 40.0% | |
| AAAACCTGCCAGCTAAGTAT+CGG | + | chr3_3:13551652-13551671 | None:intergenic | 40.0% | |
| AAATCTTGAGGTTGCGCATA+AGG | + | chr3_3:13551678-13551697 | None:intergenic | 40.0% | |
| GTGAACCTGAGAGATATTGT+AGG | - | chr3_3:13551794-13551813 | Msa0443050:intron | 40.0% | |
| ! | AGAGTTTGAACGGATTTCTC+CGG | - | chr3_3:13551935-13551954 | Msa0443050:intron | 40.0% |
| !! | TAGTTTGTTCTGTTGTGGTC+TGG | + | chr3_3:13552183-13552202 | None:intergenic | 40.0% |
| GTGTCTGATATTGTCGATGT+GGG | + | chr3_3:13552337-13552356 | None:intergenic | 40.0% | |
| TGTGTCTGATATTGTCGATG+TGG | + | chr3_3:13552338-13552357 | None:intergenic | 40.0% | |
| ACAATATCAGACACAGCAGT+GGG | - | chr3_3:13552343-13552362 | Msa0443050:intron | 40.0% | |
| AATGCCATTGCAAAATGGGT+TGG | + | chr3_3:13552676-13552695 | None:intergenic | 40.0% | |
| !!! | GATGTCACCGGATTTTTTTC+AGG | + | chr3_3:13552724-13552743 | None:intergenic | 40.0% |
| GAAAAAAATCCGGTGACATC+TGG | - | chr3_3:13552724-13552743 | Msa0443050:CDS | 40.0% | |
| CATGTTAGGTTCTGTTTGAG+AGG | - | chr3_3:13552858-13552877 | Msa0443050:intron | 40.0% | |
| AGGGTAAAAGAAAATGGGGA+GGG | + | chr3_3:13552898-13552917 | None:intergenic | 40.0% | |
| AAGGGTAAAAGAAAATGGGG+AGG | + | chr3_3:13552899-13552918 | None:intergenic | 40.0% | |
| ! | AGGAATGCTGCATTTTCACT+AGG | + | chr3_3:13553135-13553154 | None:intergenic | 40.0% |
| AATGCAGCATTCCTTCCTTT+CGG | - | chr3_3:13553141-13553160 | Msa0443050:intron | 40.0% | |
| CCAACAATGTAGCAACAACT+TGG | + | chr3_3:13553206-13553225 | None:intergenic | 40.0% | |
| CCAAGTTGTTGCTACATTGT+TGG | - | chr3_3:13553203-13553222 | Msa0443050:intron | 40.0% | |
| GAGAATAGAAAGCCATGGAA+TGG | - | chr3_3:13553387-13553406 | Msa0443050:intron | 40.0% | |
| ATACAGATAAGGCTCAACAC+AGG | - | chr3_3:13553699-13553718 | Msa0443050:intron | 40.0% | |
| TCATCTTGTCCACCATAATC+CGG | - | chr3_3:13553755-13553774 | Msa0443050:intron | 40.0% | |
| TTTGTGAATCCGGATTATGG+TGG | + | chr3_3:13553767-13553786 | None:intergenic | 40.0% | |
| TAAAGCTTCCCCTTTCATCT+TGG | + | chr3_3:13553938-13553957 | None:intergenic | 40.0% | |
| TTTAATCACTGCCCTAGTGT+TGG | - | chr3_3:13554038-13554057 | Msa0443050:CDS | 40.0% | |
| TGAAGAAGGAAGTCCAGGAA+TGG | + | chr3_3:13548133-13548152 | None:intergenic | 45.0% | |
| AAGGATGAAGAAGGAAGTCC+AGG | + | chr3_3:13548138-13548157 | None:intergenic | 45.0% | |
| ! | GAAGCTTCTGGTGTCAGTTA+AGG | - | chr3_3:13549247-13549266 | Msa0443050:intron | 45.0% |
| ! | GAGGATAAGCTGCCTTTTAC+TGG | - | chr3_3:13549305-13549324 | Msa0443050:intron | 45.0% |
| AAGGGGCAAAAAGGCTTGAA+TGG | + | chr3_3:13549355-13549374 | None:intergenic | 45.0% | |
| ! | AAATTTTCCTCCGGCATTGC+TGG | + | chr3_3:13549513-13549532 | None:intergenic | 45.0% |
| ACTCAATGGCCCTTAAACCA+AGG | - | chr3_3:13549601-13549620 | Msa0443050:intron | 45.0% | |
| TGCAATTCCAGGGACCAATT+TGG | + | chr3_3:13549684-13549703 | None:intergenic | 45.0% | |
| ATGTCAGAGCTGCAATTCCA+GGG | + | chr3_3:13549694-13549713 | None:intergenic | 45.0% | |
| AATGTCAGAGCTGCAATTCC+AGG | + | chr3_3:13549695-13549714 | None:intergenic | 45.0% | |
| CGGGAGAAGAAAACAATCTG+TGG | + | chr3_3:13549860-13549879 | None:intergenic | 45.0% | |
| CAGCCGTCTTCATCAATCTT+TGG | + | chr3_3:13550282-13550301 | None:intergenic | 45.0% | |
| !! | GTCAGAGGAAGCATTAGTTG+CGG | - | chr3_3:13550358-13550377 | Msa0443050:intron | 45.0% |
| !! | TCAGAGGAAGCATTAGTTGC+GGG | - | chr3_3:13550359-13550378 | Msa0443050:intron | 45.0% |
| TTAATGGGAGCCACATTCCT+CGG | - | chr3_3:13550409-13550428 | Msa0443050:CDS | 45.0% | |
| TCCTCGTATATTGCAGCCTT+CGG | + | chr3_3:13550454-13550473 | None:intergenic | 45.0% | |
| !!! | GTTACTCCGTTTTGGAAACG+AGG | - | chr3_3:13550523-13550542 | Msa0443050:CDS | 45.0% |
| ! | AGCCTTTTCTGCGATGTTGA+AGG | + | chr3_3:13550603-13550622 | None:intergenic | 45.0% |
| TTGTAGTGAGAGTTCCAACC+CGG | - | chr3_3:13550654-13550673 | Msa0443050:intron | 45.0% | |
| ! | TATCAGCTGACTTCACTTCC+GGG | + | chr3_3:13550675-13550694 | None:intergenic | 45.0% |
| ! | CTATCAGCTGACTTCACTTC+CGG | + | chr3_3:13550676-13550695 | None:intergenic | 45.0% |
| ACACAATGCCGTTCTAATGG+CGG | - | chr3_3:13550697-13550716 | Msa0443050:intron | 45.0% | |
| ACACGCATGATGTTACCACA+AGG | + | chr3_3:13550781-13550800 | None:intergenic | 45.0% | |
| ATCATGCGTGTGATGCTTCA+TGG | - | chr3_3:13550790-13550809 | Msa0443050:intron | 45.0% | |
| TATGAAGCACGAACACTCCT+CGG | - | chr3_3:13551004-13551023 | Msa0443050:intron | 45.0% | |
| ATGAAGCACAGATACGGACA+CGG | + | chr3_3:13551157-13551176 | None:intergenic | 45.0% | |
| TGTCCGTATCTGTGCTTCAT+AGG | - | chr3_3:13551157-13551176 | Msa0443050:CDS | 45.0% | |
| ATAGAACACCTCTGCAGCAT+GGG | + | chr3_3:13551332-13551351 | None:intergenic | 45.0% | |
| TCAGACTTGAGATTCGCAAC+TGG | - | chr3_3:13551483-13551502 | Msa0443050:CDS | 45.0% | |
| ACTGGTTGTTCCTGTTCCAT+TGG | - | chr3_3:13551530-13551549 | Msa0443050:CDS | 45.0% | |
| TGCATCTTTCCCCCAATTGA+AGG | + | chr3_3:13551568-13551587 | None:intergenic | 45.0% | |
| AAACCTGCCAGCTAAGTATC+GGG | + | chr3_3:13551651-13551670 | None:intergenic | 45.0% | |
| ! | GACATGATCTACAGCACTGA+AGG | + | chr3_3:13551722-13551741 | None:intergenic | 45.0% |
| ! | GAGTTTGAACGGATTTCTCC+GGG | - | chr3_3:13551936-13551955 | Msa0443050:intron | 45.0% |
| CTTGAACCAATATCTAGCCC+CGG | + | chr3_3:13551973-13551992 | None:intergenic | 45.0% | |
| ACATGCAGAGAGAACCTTCA+TGG | - | chr3_3:13552046-13552065 | Msa0443050:intron | 45.0% | |
| GACAATATCAGACACAGCAG+TGG | - | chr3_3:13552342-13552361 | Msa0443050:intron | 45.0% | |
| CAATATCAGACACAGCAGTG+GGG | - | chr3_3:13552344-13552363 | Msa0443050:intron | 45.0% | |
| ! | TTCAGGACAAACAGCATCGA+TGG | + | chr3_3:13552707-13552726 | None:intergenic | 45.0% |
| AAAAATCCGGTGACATCTGG+TGG | - | chr3_3:13552727-13552746 | Msa0443050:CDS | 45.0% | |
| GCTACTTCTGTTACGAGTGA+AGG | - | chr3_3:13553280-13553299 | Msa0443050:intron | 45.0% | |
| AATGGCTCATTGTGGTCATG+TGG | - | chr3_3:13553968-13553987 | Msa0443050:CDS | 45.0% | |
| ATGGCTTGAAGCCAACACTA+GGG | + | chr3_3:13554052-13554071 | None:intergenic | 45.0% | |
| ATATTCCTGCAAGGAGCCAT+AGG | - | chr3_3:13554115-13554134 | Msa0443050:CDS | 45.0% | |
| AGAAGGGGAAGGAAAACCTA+TGG | + | chr3_3:13554134-13554153 | None:intergenic | 45.0% | |
| AAAGCTCCTCATCCAGAGAA+GGG | + | chr3_3:13554150-13554169 | None:intergenic | 45.0% | |
| AAAAGCTCCTCATCCAGAGA+AGG | + | chr3_3:13554151-13554170 | None:intergenic | 45.0% | |
| !!! | AAAGATAAAATTAAATTTTT+TGG | + | chr3_3:13548470-13548489 | None:intergenic | 5.0% |
| CTAAGTGTCAGTGTCGTCTC+TGG | + | chr3_3:13548273-13548292 | None:intergenic | 50.0% | |
| CACTGACACGTATCAGACAC+AGG | + | chr3_3:13549002-13549021 | None:intergenic | 50.0% | |
| TGACATGACACCGACACATG+TGG | - | chr3_3:13549030-13549049 | Msa0443050:intron | 50.0% | |
| GTTAGGTCCTACGAAGCTTC+TGG | - | chr3_3:13549235-13549254 | Msa0443050:intron | 50.0% | |
| ACTGACACCAGAAGCTTCGT+AGG | + | chr3_3:13549245-13549264 | None:intergenic | 50.0% | |
| ATTGTTTCCAGCAATGCCGG+AGG | - | chr3_3:13549503-13549522 | Msa0443050:intron | 50.0% | |
| ! | GGCCCTTAAACCAAGGCATT+TGG | - | chr3_3:13549608-13549627 | Msa0443050:intron | 50.0% |
| GGCTGATCTGAATCCTCTGA+AGG | - | chr3_3:13550297-13550316 | Msa0443050:intron | 50.0% | |
| !! | AGGAAGCATTAGTTGCGGGT+TGG | - | chr3_3:13550363-13550382 | Msa0443050:intron | 50.0% |
| !! | CGGGTTGGTTTCTCAGCATA+TGG | - | chr3_3:13550378-13550397 | Msa0443050:intron | 50.0% |
| ATTCCTCGGAGACAGCTTCT+TGG | - | chr3_3:13550423-13550442 | Msa0443050:CDS | 50.0% | |
| GATTAGGTGTGTCCCGATGT+CGG | - | chr3_3:13551026-13551045 | Msa0443050:intron | 50.0% | |
| ACACGACACATGTCCGACAT+CGG | + | chr3_3:13551042-13551061 | None:intergenic | 50.0% | |
| CATAGAACACCTCTGCAGCA+TGG | + | chr3_3:13551333-13551352 | None:intergenic | 50.0% | |
| ACTGGTGTAACCATACCTGC+TGG | - | chr3_3:13551501-13551520 | Msa0443050:CDS | 50.0% | |
| ! | AACCTGCCAGCTAAGTATCG+GGG | + | chr3_3:13551650-13551669 | None:intergenic | 50.0% |
| TGTTCTGTTGTGGTCTGGTC+TGG | + | chr3_3:13552178-13552197 | None:intergenic | 50.0% | |
| ACTTACCTGGATGGGGTCAA+TGG | - | chr3_3:13552409-13552428 | Msa0443050:intron | 50.0% | |
| CTTACCTGGATGGGGTCAAT+GGG | - | chr3_3:13552410-13552429 | Msa0443050:intron | 50.0% | |
| AGGTGACCTCCATTGCACTT+AGG | - | chr3_3:13552459-13552478 | Msa0443050:intron | 50.0% | |
| TGACCTCCATTGCACTTAGG+AGG | - | chr3_3:13552462-13552481 | Msa0443050:intron | 50.0% | |
| GACCTCCATTGCACTTAGGA+GGG | - | chr3_3:13552463-13552482 | Msa0443050:intron | 50.0% | |
| ACCTCCATTGCACTTAGGAG+GGG | - | chr3_3:13552464-13552483 | Msa0443050:intron | 50.0% | |
| CACTTGGGTAGACCTTAGGA+AGG | + | chr3_3:13552492-13552511 | None:intergenic | 50.0% | |
| CTTCCTAAGGTCTACCCAAG+TGG | - | chr3_3:13552490-13552509 | Msa0443050:intron | 50.0% | |
| TGATGTAGGCTCCACCACTT+GGG | + | chr3_3:13552507-13552526 | None:intergenic | 50.0% | |
| ATGATGTAGGCTCCACCACT+TGG | + | chr3_3:13552508-13552527 | None:intergenic | 50.0% | |
| ! | ATTTTGTGTGGCCGTTGCCT+AGG | - | chr3_3:13552582-13552601 | Msa0443050:intron | 50.0% |
| TTTCAGCCCTATCAGAGCCT+AGG | + | chr3_3:13552602-13552621 | None:intergenic | 50.0% | |
| GCATTCCTTCCTTTCGGATC+CGG | - | chr3_3:13553147-13553166 | Msa0443050:intron | 50.0% | |
| GCTCATTGTGGTCATGTGGT+AGG | - | chr3_3:13553972-13553991 | Msa0443050:CDS | 50.0% | |
| CATGGCTTGAAGCCAACACT+AGG | + | chr3_3:13554053-13554072 | None:intergenic | 50.0% | |
| !! | CTAGTGTTGGCTTCAAGCCA+TGG | - | chr3_3:13554051-13554070 | Msa0443050:CDS | 50.0% |
| GAAAACCTATGGCTCCTTGC+AGG | + | chr3_3:13554123-13554142 | None:intergenic | 50.0% | |
| ! | AGGTTTTCCTTCCCCTTCTC+TGG | - | chr3_3:13554135-13554154 | Msa0443050:CDS | 50.0% |
| AAGCTCCTCATCCAGAGAAG+GGG | + | chr3_3:13554149-13554168 | None:intergenic | 50.0% | |
| GTCAGTGTCGTCTCTGGTGT+CGG | + | chr3_3:13548267-13548286 | None:intergenic | 55.0% | |
| GAAGCTGTCTCCGAGGAATG+TGG | + | chr3_3:13550422-13550441 | None:intergenic | 55.0% | |
| ATGCCAAGAAGCTGTCTCCG+AGG | + | chr3_3:13550429-13550448 | None:intergenic | 55.0% | |
| TCGGAGACAGCTTCTTGGCA+TGG | - | chr3_3:13550428-13550447 | Msa0443050:CDS | 55.0% | |
| GCCGAAGGCTGCAATATACG+AGG | - | chr3_3:13550450-13550469 | Msa0443050:CDS | 55.0% | |
| ! | AGCTGACTTCACTTCCGGGT+TGG | + | chr3_3:13550671-13550690 | None:intergenic | 55.0% |
| GCACGAACACTCCTCGGATT+AGG | - | chr3_3:13551010-13551029 | Msa0443050:intron | 55.0% | |
| ATCGGGACACACCTAATCCG+AGG | + | chr3_3:13551024-13551043 | None:intergenic | 55.0% | |
| CACGACACATGTCCGACATC+GGG | + | chr3_3:13551041-13551060 | None:intergenic | 55.0% | |
| ACAGATACGGACACGGACAC+CGG | + | chr3_3:13551150-13551169 | None:intergenic | 55.0% | |
| TCTGCAGCATGGGACCACTT+GGG | + | chr3_3:13551322-13551341 | None:intergenic | 55.0% | |
| CAGTACAGCTCCAGCAGGTA+TGG | + | chr3_3:13551514-13551533 | None:intergenic | 55.0% | |
| CATACCTGCTGGAGCTGTAC+TGG | - | chr3_3:13551512-13551531 | Msa0443050:CDS | 55.0% | |
| ACAACCAGTACAGCTCCAGC+AGG | + | chr3_3:13551519-13551538 | None:intergenic | 55.0% | |
| !! | ACCTGCCAGCTAAGTATCGG+GGG | + | chr3_3:13551649-13551668 | None:intergenic | 55.0% |
| CGGATTTCTCCGGGAAGTCA+TGG | - | chr3_3:13551945-13551964 | Msa0443050:intron | 55.0% | |
| ! | ATGGTGCCGGGGCTAGATAT+TGG | - | chr3_3:13551964-13551983 | Msa0443050:intron | 55.0% |
| AGACACAGCAGTGGGGAAAG+TGG | - | chr3_3:13552351-13552370 | Msa0443050:intron | 55.0% | |
| GACACAGCAGTGGGGAAAGT+GGG | - | chr3_3:13552352-13552371 | Msa0443050:intron | 55.0% | |
| ATCACCCATTGACCCCATCC+AGG | + | chr3_3:13552417-13552436 | None:intergenic | 55.0% | |
| GATGGGGTCAATGGGTGATC+AGG | - | chr3_3:13552418-13552437 | Msa0443050:intron | 55.0% | |
| GGGTCAATGGGTGATCAGGA+AGG | - | chr3_3:13552422-13552441 | Msa0443050:intron | 55.0% | |
| AGGTCACCTTCCTAGGCCAT+GGG | + | chr3_3:13552448-13552467 | None:intergenic | 55.0% | |
| GCAATGGAGGTCACCTTCCT+AGG | + | chr3_3:13552455-13552474 | None:intergenic | 55.0% | |
| ACCCCTCCTAAGTGCAATGG+AGG | + | chr3_3:13552468-13552487 | None:intergenic | 55.0% | |
| !! | TTAGGAGGGGTGCCTTCCTA+AGG | - | chr3_3:13552477-13552496 | Msa0443050:intron | 55.0% |
| CCACCACTTGGGTAGACCTT+AGG | + | chr3_3:13552496-13552515 | None:intergenic | 55.0% | |
| CCTAAGGTCTACCCAAGTGG+TGG | - | chr3_3:13552493-13552512 | Msa0443050:intron | 55.0% | |
| CCCTATCAGAGCCTAGGCAA+CGG | + | chr3_3:13552596-13552615 | None:intergenic | 55.0% | |
| ! | CCGTTGCCTAGGCTCTGATA+GGG | - | chr3_3:13552593-13552612 | Msa0443050:intron | 55.0% |
| ! | TCTCACCTCGCCCCGTTTTA+TGG | - | chr3_3:13552623-13552642 | Msa0443050:intron | 55.0% |
| !! | CAAAATGGGTTGGCCCCGTA+GGG | + | chr3_3:13552666-13552685 | None:intergenic | 55.0% |
| ! | GGGGCCAACCCATTTTGCAA+TGG | - | chr3_3:13552669-13552688 | Msa0443050:CDS | 55.0% |
| AATCCGGTGACATCTGGTGG+TGG | - | chr3_3:13552730-13552749 | Msa0443050:CDS | 55.0% | |
| TGACCACCACCAGATGTCAC+CGG | + | chr3_3:13552736-13552755 | None:intergenic | 55.0% | |
| GTGTACCGGATCCGAAAGGA+AGG | + | chr3_3:13553155-13553174 | None:intergenic | 55.0% | |
| GCATGTGTACCGGATCCGAA+AGG | + | chr3_3:13553159-13553178 | None:intergenic | 55.0% | |
| TCCGGTACACATGCTTGCGT+TGG | - | chr3_3:13553165-13553184 | Msa0443050:intron | 55.0% | |
| CCCAACGCAAGCATGTGTAC+CGG | + | chr3_3:13553169-13553188 | None:intergenic | 55.0% | |
| CCGGTACACATGCTTGCGTT+GGG | - | chr3_3:13553166-13553185 | Msa0443050:intron | 55.0% | |
| AGGCTCAACACAGGCTCAGA+TGG | - | chr3_3:13553708-13553727 | Msa0443050:intron | 55.0% | |
| CACAGGCTCAGATGGTGACT+CGG | - | chr3_3:13553716-13553735 | Msa0443050:intron | 55.0% | |
| TCCTTCCCCTTCTCTGGATG+AGG | - | chr3_3:13554141-13554160 | Msa0443050:CDS | 55.0% | |
| TCCTCATCCAGAGAAGGGGA+AGG | + | chr3_3:13554145-13554164 | None:intergenic | 55.0% | |
| CAGCTTCTTGGCATGGCCGA+AGG | - | chr3_3:13550435-13550454 | Msa0443050:CDS | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+CGG | - | chr3_3:13551128-13551147 | Msa0443050:intron | 60.0% | |
| TCTGCACGCCTTCTCCCAAG+TGG | - | chr3_3:13551305-13551324 | Msa0443050:CDS | 60.0% | |
| GCATGGGACCACTTGGGAGA+AGG | + | chr3_3:13551316-13551335 | None:intergenic | 60.0% | |
| CTCTGCAGCATGGGACCACT+TGG | + | chr3_3:13551323-13551342 | None:intergenic | 60.0% | |
| CAAGTGGTCCCATGCTGCAG+AGG | - | chr3_3:13551321-13551340 | Msa0443050:CDS | 60.0% | |
| !! | CTGCCAGCTAAGTATCGGGG+GGG | + | chr3_3:13551647-13551666 | None:intergenic | 60.0% |
| !! | CCTGCCAGCTAAGTATCGGG+GGG | + | chr3_3:13551648-13551667 | None:intergenic | 60.0% |
| TCTCCGGGAAGTCATGGTGC+CGG | - | chr3_3:13551951-13551970 | Msa0443050:intron | 60.0% | |
| TGGGTGATCAGGAAGGCCCA+TGG | - | chr3_3:13552429-13552448 | Msa0443050:intron | 60.0% | |
| ATCAGGAAGGCCCATGGCCT+AGG | - | chr3_3:13552435-13552454 | Msa0443050:intron | 60.0% | |
| GAGGTCACCTTCCTAGGCCA+TGG | + | chr3_3:13552449-13552468 | None:intergenic | 60.0% | |
| GGCACCCCTCCTAAGTGCAA+TGG | + | chr3_3:13552471-13552490 | None:intergenic | 60.0% | |
| ! | GCCGTTGCCTAGGCTCTGAT+AGG | - | chr3_3:13552592-13552611 | Msa0443050:intron | 60.0% |
| ! | CACCTCGCCCCGTTTTATGG+CGG | - | chr3_3:13552626-13552645 | Msa0443050:intron | 60.0% |
| TCCGCCGGTCCGCCATAAAA+CGG | + | chr3_3:13552638-13552657 | None:intergenic | 60.0% | |
| !! | TTTATGGCGGACCGGCGGAT+TGG | - | chr3_3:13552639-13552658 | Msa0443050:intron | 60.0% |
| !! | GCAAAATGGGTTGGCCCCGT+AGG | + | chr3_3:13552667-13552686 | None:intergenic | 60.0% |
| !! | GGTGACATCTGGTGGTGGTC+AGG | - | chr3_3:13552735-13552754 | Msa0443050:CDS | 60.0% |
| CACGGACACCGGACACGACA+CGG | + | chr3_3:13551139-13551158 | None:intergenic | 65.0% | |
| GAGCCCCCCCGATACTTAGC+TGG | - | chr3_3:13551641-13551660 | Msa0443050:CDS | 65.0% | |
| CCCCCCGATACTTAGCTGGC+AGG | - | chr3_3:13551645-13551664 | Msa0443050:CDS | 65.0% | |
| CTCCGGGAAGTCATGGTGCC+GGG | - | chr3_3:13551952-13551971 | Msa0443050:intron | 65.0% | |
| ! | TCCGGGAAGTCATGGTGCCG+GGG | - | chr3_3:13551953-13551972 | Msa0443050:intron | 65.0% |
| GGAAGGCCCATGGCCTAGGA+AGG | - | chr3_3:13552439-13552458 | Msa0443050:intron | 65.0% | |
| GTCCGCCATAAAACGGGGCG+AGG | + | chr3_3:13552631-13552650 | None:intergenic | 65.0% | |
| !!! | CGCCCCGTTTTATGGCGGAC+CGG | - | chr3_3:13552631-13552650 | Msa0443050:intron | 65.0% |
| CGCCGGTCCGCCATAAAACG+GGG | + | chr3_3:13552636-13552655 | None:intergenic | 65.0% | |
| CCGCCGGTCCGCCATAAAAC+GGG | + | chr3_3:13552637-13552656 | None:intergenic | 65.0% | |
| !!! | CCCGTTTTATGGCGGACCGG+CGG | - | chr3_3:13552634-13552653 | Msa0443050:intron | 65.0% |
| !! | GACCGGCGGATTGGACCCTA+CGG | - | chr3_3:13552648-13552667 | Msa0443050:CDS | 65.0% |
| !! | ACCGGCGGATTGGACCCTAC+GGG | - | chr3_3:13552649-13552668 | Msa0443050:CDS | 65.0% |
| GCCCCGGCACCATGACTTCC+CGG | + | chr3_3:13551957-13551976 | None:intergenic | 70.0% | |
| CCCCGTAGGGTCCAATCCGC+CGG | + | chr3_3:13552653-13552672 | None:intergenic | 70.0% | |
| !! | CCGGCGGATTGGACCCTACG+GGG | - | chr3_3:13552650-13552669 | Msa0443050:CDS | 70.0% |
| TGTGGGGGCCTGCGTTCGCG+CGG | - | chr3_3:13552538-13552557 | Msa0443050:intron | 75.0% | |
| ! | GAAGGGGGCCGCGCGAACGC+AGG | + | chr3_3:13552549-13552568 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 13547765 | 13554265 | 13547765 | ID=Msa0443050;Name=Msa0443050 |
| chr3_3 | mRNA | 13547765 | 13554265 | 13547765 | ID=Msa0443050-mRNA-1;Parent=Msa0443050;Name=Msa0443050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=82|0.8|0.83|1|1|1|6|453|543 |
| chr3_3 | exon | 13547765 | 13548325 | 13547765 | ID=Msa0443050-mRNA-1:exon:2971;Parent=Msa0443050-mRNA-1 |
| chr3_3 | exon | 13548782 | 13548948 | 13548782 | ID=Msa0443050-mRNA-1:exon:2970;Parent=Msa0443050-mRNA-1 |
| chr3_3 | exon | 13550394 | 13550543 | 13550394 | ID=Msa0443050-mRNA-1:exon:2969;Parent=Msa0443050-mRNA-1 |
| chr3_3 | exon | 13551135 | 13551789 | 13551135 | ID=Msa0443050-mRNA-1:exon:2968;Parent=Msa0443050-mRNA-1 |
| chr3_3 | exon | 13552645 | 13552844 | 13552645 | ID=Msa0443050-mRNA-1:exon:2967;Parent=Msa0443050-mRNA-1 |
| chr3_3 | exon | 13553832 | 13554265 | 13553832 | ID=Msa0443050-mRNA-1:exon:2966;Parent=Msa0443050-mRNA-1 |
| chr3_3 | five_prime_UTR | 13554184 | 13554265 | 13554184 | ID=Msa0443050-mRNA-1:five_prime_utr;Parent=Msa0443050-mRNA-1 |
| chr3_3 | CDS | 13553832 | 13554183 | 13553832 | ID=Msa0443050-mRNA-1:cds;Parent=Msa0443050-mRNA-1 |
| chr3_3 | CDS | 13552645 | 13552844 | 13552645 | ID=Msa0443050-mRNA-1:cds;Parent=Msa0443050-mRNA-1 |
| chr3_3 | CDS | 13551135 | 13551789 | 13551135 | ID=Msa0443050-mRNA-1:cds;Parent=Msa0443050-mRNA-1 |
| chr3_3 | CDS | 13550394 | 13550543 | 13550394 | ID=Msa0443050-mRNA-1:cds;Parent=Msa0443050-mRNA-1 |
| chr3_3 | CDS | 13548782 | 13548948 | 13548782 | ID=Msa0443050-mRNA-1:cds;Parent=Msa0443050-mRNA-1 |
| chr3_3 | CDS | 13548218 | 13548325 | 13548218 | ID=Msa0443050-mRNA-1:cds;Parent=Msa0443050-mRNA-1 |
| chr3_3 | three_prime_UTR | 13547765 | 13548217 | 13547765 | ID=Msa0443050-mRNA-1:three_prime_utr;Parent=Msa0443050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
