AlfalfaGEDB | Msa0491240

M. sativa cultivar zhongmu-4 / Msa0491240

KEGG: K14492
GO: -
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491240	XP_024634071.2	97.605	167	4	0	1	167	1	167	2.53e-115	333

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491240	sp\|O80366\|ARR9_ARATH	70.270	148	43	1	2	148	7	154	7.27e-71	216

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491240	A0A396IJ66	97.605	167	4	0	1	167	1	167	1.21e-115	333

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TFs/TRs:

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Gene ID	Type	Classification
Msa0491240	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0349430	Msa0491240	0.831019	2.115760e-55	-8.615850e-47
Msa0462220	Msa0491240	0.843068	1.758745e-58	-8.615850e-47
Msa0491240	Msa1151000	0.840786	7.049846e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491240	MtrunA17_Chr3g0082861	97.605	167	4	0	1	167	1	167	2.33e-119	333
Msa0491240	MtrunA17_Chr8g0352871	73.939	165	42	1	3	167	8	171	2.27e-84	246
Msa0491240	MtrunA17_Chr7g0256551	69.136	162	48	1	2	163	7	166	1.18e-78	233
Msa0491240	MtrunA17_Chr3g0124861	57.595	158	53	3	4	150	22	176	3.31e-57	179
Msa0491240	MtrunA17_Chr5g0414931	57.971	138	53	1	3	140	15	147	1.53e-52	167
Msa0491240	MtrunA17_Chr3g0118211	50.920	163	71	2	1	163	20	173	1.44e-51	163
Msa0491240	MtrunA17_Chr4g0059571	53.374	163	67	3	2	164	24	177	2.06e-51	163
Msa0491240	MtrunA17_Chr1g0170741	58.696	138	51	1	3	140	7	138	4.09e-51	162
Msa0491240	MtrunA17_Chr3g0128691	55.634	142	46	3	5	141	19	148	3.54e-50	158
Msa0491240	MtrunA17_Chr4g0021731	73.864	88	14	1	3	90	10	88	1.94e-40	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0491240	AT3G57040.2	70.270	148	43	1	2	148	7	154	7.39e-72	216
Msa0491240	AT3G57040.1	70.270	148	43	1	2	148	7	154	7.39e-72	216
Msa0491240	AT2G41310.1	65.772	149	50	1	2	150	7	154	6.31e-68	206
Msa0491240	AT1G59940.1	56.604	159	55	4	3	160	32	177	2.59e-55	174
Msa0491240	AT1G10470.3	55.556	162	57	5	1	161	17	164	3.41e-54	172
Msa0491240	AT1G10470.1	56.250	160	55	5	3	161	33	178	4.20e-54	172
Msa0491240	AT1G59940.2	60.714	140	46	2	3	142	124	254	1.48e-53	172
Msa0491240	AT3G48100.1	54.601	163	59	4	4	163	25	175	2.44e-53	167
Msa0491240	AT3G56380.1	54.930	142	56	2	3	144	19	152	1.25e-51	162
Msa0491240	AT5G62920.1	58.865	141	49	3	4	144	25	156	1.26e-50	160

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Find 48 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACCATGAAATGAAG+AGG	0.534519	3_4:-13555109	None:intergenic
AAACTGTCAGATTTCCTAGG+AGG	0.585928	3_4:+13554852	Msa0491240:five_prime_UTR
AAAGAAGTTAAGAATGTTTG+AGG	0.402917	3_4:-13554979	None:intergenic
AACATTTACTGTCCAAATTA+TGG	0.196728	3_4:+13555017	Msa0491240:exon
AAGAATGTTTGAGGATAATA+AGG	0.213912	3_4:-13554970	None:intergenic
AAGATAAAGATGAATGAGAG+AGG	0.554093	3_4:-13554923	None:intergenic
ACAAAGGCTTTGAAGTTTCT+TGG	0.316260	3_4:+13555611	Msa0491240:CDS
ACCTAATCAACAACAAAAGA+AGG	0.519626	3_4:+13556704	Msa0491240:CDS
AGAAGAGCTTGCTGATGAAT+AGG	0.435827	3_4:+13556860	Msa0491240:three_prime_UTR
AGAATGTTTGAGGATAATAA+GGG	0.521500	3_4:-13554969	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATAAAGATGAATGAGAG+AGG	-	chr3_4:13554926-13554945	None:intergenic	30.0%
TATGAAACTGTGCCATAATT+TGG	-	chr3_4:13555032-13555051	None:intergenic	30.0%
GATGTTCCAAGTTATTAACT+TGG	+	chr3_4:13555475-13555494	Msa0491240:intron	30.0%
TGTGTTCCAAGTTAATAACT+TGG	-	chr3_4:13555484-13555503	None:intergenic	30.0%
CATATAATCGAGATCATATG+CGG	+	chr3_4:13556196-13556215	Msa0491240:intron	30.0%
TGATGTCATAATGAAAATCG+AGG	+	chr3_4:13556251-13556270	Msa0491240:intron	30.0%
TTCTCTTAAAGATATACCAG+TGG	+	chr3_4:13556417-13556436	Msa0491240:CDS	30.0%
TTTCGAATTCAAAACTTTGG+AGG	+	chr3_4:13556518-13556537	Msa0491240:intron	30.0%
TCTAAGCATCTGATTCAATA+AGG	-	chr3_4:13556586-13556605	None:intergenic	30.0%
TTAACATCTGATTGTTGAAC+TGG	-	chr3_4:13556637-13556656	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	13554804	13557162	13554804	ID=Msa0491240;Name=Msa0491240
chr3_4	mRNA	13554804	13557162	13554804	ID=Msa0491240-mRNA-1;Parent=Msa0491240;Name=Msa0491240-mRNA-1;_AED=0.14;_eAED=0.14;_QI=232\|1\|1\|1\|0.8\|0.66\|6\|374\|167
chr3_4	exon	13554804	13555123	13554804	ID=Msa0491240-mRNA-1:exon:4087;Parent=Msa0491240-mRNA-1
chr3_4	exon	13555591	13555694	13555591	ID=Msa0491240-mRNA-1:exon:4088;Parent=Msa0491240-mRNA-1
chr3_4	exon	13555811	13555888	13555811	ID=Msa0491240-mRNA-1:exon:4089;Parent=Msa0491240-mRNA-1
chr3_4	exon	13556409	13556479	13556409	ID=Msa0491240-mRNA-1:exon:4090;Parent=Msa0491240-mRNA-1
chr3_4	exon	13556597	13557045	13556597	ID=Msa0491240-mRNA-1:exon:4091;Parent=Msa0491240-mRNA-1
chr3_4	exon	13557075	13557162	13557075	ID=Msa0491240-mRNA-1:exon:4092;Parent=Msa0491240-mRNA-1
chr3_4	five_prime_UTR	13554804	13555035	13554804	ID=Msa0491240-mRNA-1:five_prime_utr;Parent=Msa0491240-mRNA-1
chr3_4	CDS	13555036	13555123	13555036	ID=Msa0491240-mRNA-1:cds;Parent=Msa0491240-mRNA-1
chr3_4	CDS	13555591	13555694	13555591	ID=Msa0491240-mRNA-1:cds;Parent=Msa0491240-mRNA-1
chr3_4	CDS	13555811	13555888	13555811	ID=Msa0491240-mRNA-1:cds;Parent=Msa0491240-mRNA-1
chr3_4	CDS	13556409	13556479	13556409	ID=Msa0491240-mRNA-1:cds;Parent=Msa0491240-mRNA-1
chr3_4	CDS	13556597	13556759	13556597	ID=Msa0491240-mRNA-1:cds;Parent=Msa0491240-mRNA-1
chr3_4	three_prime_UTR	13556760	13557045	13556760	ID=Msa0491240-mRNA-1:three_prime_utr;Parent=Msa0491240-mRNA-1
chr3_4	three_prime_UTR	13557075	13557162	13557075	ID=Msa0491240-mRNA-1:three_prime_utr;Parent=Msa0491240-mRNA-1

Gene Sequence

>Msa0491240

ATGGCACAGTTTCATATTTTGGCTGTTGATGACAGTGTTATTGACAGAATGTTGATTGAAAGGCTGCTCAAAACCTCTTCATTTCATGTTACTGTGGTTGATTCTGGTACAAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGATGTGAGGAATGAAAAGCCTCATTCTATTGCTGCAGAAACAGATCAGGTTGTAGAAGTGAATCTGATCATAACTGATTACTGTATGCCAGGAATGACTGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAATTCTCTTAAAGATATACCAGTGGTGATTATGTCCTCAGAGAATGTTCCATCAAGGATTAACAGATGCTTAGAAGAAGGAGCTGAAGAATTCTTTCTGAAACCAGTTCAACAATCAGATGTTAACAAGTTGAAACCACATTTGTTGAAGACAAAATTTAAGAATGAAGATGACCTAATCAACAACAAAAGAAGGATACAAAACAATGCAATTCCATTGAAAAACTAG

Protein sequence

>Msa0491240

MAQFHILAVDDSVIDRMLIERLLKTSSFHVTVVDSGTKALKFLGLVEDDVRNEKPHSIAAETDQVVEVNLIITDYCMPGMTGYDLLRKIKESNSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLKPHLLKTKFKNEDDLINNKRRIQNNAIPLKN*