Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491970 | XP_003598676.1 | 97.368 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 1.65e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491970 | sp|Q9LK88|NQR_ARATH | 70.526 | 190 | 55 | 1 | 1 | 189 | 7 | 196 | 1.10e-91 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491970 | G7IW38 | 97.368 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 7.87e-133 | 379 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0225070 | Msa0491970 | -0.801017 | 1.097710e-48 | -8.615850e-47 |
| Msa0491970 | Msa0713290 | 0.803428 | 3.502697e-49 | -8.615850e-47 |
| Msa0491970 | Msa1179340 | 0.806004 | 1.015126e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491970 | MtrunA17_Chr3g0084201 | 97.368 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 1.52e-136 | 379 |
| Msa0491970 | MtrunA17_Chr3g0084221 | 83.246 | 191 | 31 | 1 | 1 | 190 | 1 | 191 | 5.13e-115 | 325 |
| Msa0491970 | MtrunA17_Chr3g0084161 | 72.775 | 191 | 51 | 1 | 1 | 190 | 1 | 191 | 9.45e-103 | 293 |
| Msa0491970 | MtrunA17_Chr8g0353131 | 71.579 | 190 | 53 | 1 | 2 | 190 | 3 | 192 | 9.15e-102 | 291 |
| Msa0491970 | MtrunA17_Chr3g0084191 | 68.750 | 192 | 56 | 1 | 1 | 188 | 1 | 192 | 6.21e-92 | 277 |
| Msa0491970 | MtrunA17_Chr3g0082411 | 60.317 | 63 | 20 | 1 | 49 | 106 | 1 | 63 | 8.63e-20 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491970 | AT3G27890.1 | 70.526 | 190 | 55 | 1 | 1 | 189 | 7 | 196 | 1.12e-92 | 269 |
Find 42 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATAATTATTCTGTTTC+AGG | 0.095784 | 3_4:+14949110 | Msa0491970:CDS |
| ATTAAGGTTGCTGCACTTTC+TGG | 0.101546 | 3_4:+14948767 | Msa0491970:CDS |
| TATTTCAAATTAAACACTTA+TGG | 0.206631 | 3_4:-14950353 | None:intergenic |
| GAATTTCACTCCATTCCTTT+TGG | 0.287992 | 3_4:+14950387 | Msa0491970:three_prime_UTR |
| ATTTCAAATTAAACACTTAT+GGG | 0.297906 | 3_4:-14950352 | None:intergenic |
| CAACATGTCTGGGATAATTA+AGG | 0.302994 | 3_4:+14948751 | Msa0491970:exon |
| AATTGCCAACAACCTATTCT+TGG | 0.304308 | 3_4:-14950270 | None:intergenic |
| CATCAAGATCACCAAATGTT+TGG | 0.330789 | 3_4:+14950063 | Msa0491970:CDS |
| CGAAAGGATTCAACTTCAAT+TGG | 0.333398 | 3_4:-14949044 | None:intergenic |
| GGTTTACCAGCCCAAACATT+TGG | 0.362348 | 3_4:-14950074 | None:intergenic |
| CAGTCAAGTGCATTCTTTAG+TGG | 0.388337 | 3_4:-14950038 | None:intergenic |
| TGATTCACAAACAACATGTC+TGG | 0.397731 | 3_4:+14948740 | Msa0491970:exon |
| ATCAAGATCACCAAATGTTT+GGG | 0.414288 | 3_4:+14950064 | Msa0491970:CDS |
| CGAAAAGCTTCTTACAATAC+TGG | 0.417405 | 3_4:+14948797 | Msa0491970:CDS |
| TTGCAGAGTAAATGCCTTCA+AGG | 0.417468 | 3_4:-14950300 | None:intergenic |
| GCATTTACTCTGCAACTTCA+AGG | 0.438426 | 3_4:+14950308 | Msa0491970:CDS |
| CACTAAAGAATGCACTTGAC+TGG | 0.447734 | 3_4:+14950039 | Msa0491970:CDS |
| AATACTGGTCTCATCCGTTC+TGG | 0.458585 | 3_4:+14948812 | Msa0491970:CDS |
| GTACTTGTTCTTTATTTACA+TGG | 0.475159 | 3_4:+14950465 | Msa0491970:three_prime_UTR |
| TTTCTATATGAAATTCCAAA+AGG | 0.490343 | 3_4:-14950402 | None:intergenic |
| CAATATCATCTCCGACAAAT+CGG | 0.490712 | 3_4:+14950143 | Msa0491970:CDS |
| AACACTGATCTTGAGAAAGA+AGG | 0.494409 | 3_4:+14949014 | Msa0491970:CDS |
| CAAGGAAAACTCCGATTTGT+CGG | 0.517752 | 3_4:-14950154 | None:intergenic |
| AGATGCCAAGAATAGGTTGT+TGG | 0.525362 | 3_4:+14950265 | Msa0491970:CDS |
| ACACTGATCTTGAGAAAGAA+GGG | 0.529151 | 3_4:+14949015 | Msa0491970:CDS |
| CCTGCGGCAATAGTGAGTGC+TGG | 0.540058 | 3_4:+14950095 | Msa0491970:CDS |
| CCAGCACTCACTATTGCCGC+AGG | 0.543014 | 3_4:-14950095 | None:intergenic |
| AGATCACCAAATGTTTGGGC+TGG | 0.543332 | 3_4:+14950068 | Msa0491970:CDS |
| CCAGCAAAATTTAACAGTGA+TGG | 0.543372 | 3_4:+14950227 | Msa0491970:CDS |
| TCGATGAAGATGCCAAGAAT+AGG | 0.548839 | 3_4:+14950258 | Msa0491970:CDS |
| TATTGATGAAATGAAGATCA+AGG | 0.552412 | 3_4:-14950172 | None:intergenic |
| ATATGAAATTCCAAAAGGAA+TGG | 0.558543 | 3_4:-14950397 | None:intergenic |
| GATTCACAAACAACATGTCT+GGG | 0.567971 | 3_4:+14948741 | Msa0491970:exon |
| ACTAAAGAATGCACTTGACT+GGG | 0.582016 | 3_4:+14950040 | Msa0491970:CDS |
| TCAAGATCAGTGTTCAACAT+TGG | 0.585501 | 3_4:-14949005 | None:intergenic |
| GTGAGTGCTGGAGGAGGACA+TGG | 0.596944 | 3_4:+14950107 | Msa0491970:CDS |
| GCAATAGTGAGTGCTGGAGG+AGG | 0.597133 | 3_4:+14950101 | Msa0491970:CDS |
| GAAGTAGGAACCAACCAGAA+CGG | 0.644564 | 3_4:-14948826 | None:intergenic |
| GCGGCAATAGTGAGTGCTGG+AGG | 0.656496 | 3_4:+14950098 | Msa0491970:CDS |
| TGTTTGGGCTGGTAAACCTG+CGG | 0.686432 | 3_4:+14950079 | Msa0491970:CDS |
| AGTGCTGGAGGAGGACATGG+TGG | 0.705715 | 3_4:+14950110 | Msa0491970:CDS |
| ATGTTGTTTGTGAATCAATG+TGG | 0.722529 | 3_4:-14948734 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATGTATGATTAA+TGG | - | chr3_4:14948878-14948897 | None:intergenic | 10.0% |
| !!! | TACATAATTTTTTTTTTTTG+AGG | + | chr3_4:14948885-14948904 | Msa0491970:intron | 10.0% |
| !! | AAAAAAAGGATAAATATAAA+AGG | - | chr3_4:14949229-14949248 | None:intergenic | 10.0% |
| !!! | ATATTTATCCTTTTTTTTTT+AGG | + | chr3_4:14949232-14949251 | Msa0491970:intron | 10.0% |
| !!! | TATTTATCCTTTTTTTTTTA+GGG | + | chr3_4:14949233-14949252 | Msa0491970:intron | 10.0% |
| !! | ATCTTATATTATATTACATA+TGG | - | chr3_4:14949398-14949417 | None:intergenic | 10.0% |
| !! | AAAAAATTATGTATGATTAA+TGG | - | chr3_4:14948878-14948897 | None:intergenic | 10.0% |
| !!! | TACATAATTTTTTTTTTTTG+AGG | + | chr3_4:14948885-14948904 | Msa0491970:intron | 10.0% |
| !! | AAAAAAAGGATAAATATAAA+AGG | - | chr3_4:14949229-14949248 | None:intergenic | 10.0% |
| !!! | ATATTTATCCTTTTTTTTTT+AGG | + | chr3_4:14949232-14949251 | Msa0491970:intron | 10.0% |
| !!! | TATTTATCCTTTTTTTTTTA+GGG | + | chr3_4:14949233-14949252 | Msa0491970:intron | 10.0% |
| !! | ATCTTATATTATATTACATA+TGG | - | chr3_4:14949398-14949417 | None:intergenic | 10.0% |
| !! | TTATTTATAAAATGGGATTA+TGG | + | chr3_4:14949344-14949363 | Msa0491970:intron | 15.0% |
| !!! | TAACAAGTCAATTTTTTTTT+GGG | - | chr3_4:14949472-14949491 | None:intergenic | 15.0% |
| !!! | TTAACAAGTCAATTTTTTTT+TGG | - | chr3_4:14949473-14949492 | None:intergenic | 15.0% |
| !!! | TAGATAATTTTAATTCTTGT+TGG | + | chr3_4:14949732-14949751 | Msa0491970:intron | 15.0% |
| !! | ATTTCAAATTAAACACTTAT+GGG | - | chr3_4:14950355-14950374 | None:intergenic | 15.0% |
| !! | TATTTCAAATTAAACACTTA+TGG | - | chr3_4:14950356-14950375 | None:intergenic | 15.0% |
| !! | TTATTTATAAAATGGGATTA+TGG | + | chr3_4:14949344-14949363 | Msa0491970:intron | 15.0% |
| !!! | TAACAAGTCAATTTTTTTTT+GGG | - | chr3_4:14949472-14949491 | None:intergenic | 15.0% |
| !!! | TTAACAAGTCAATTTTTTTT+TGG | - | chr3_4:14949473-14949492 | None:intergenic | 15.0% |
| !!! | TAGATAATTTTAATTCTTGT+TGG | + | chr3_4:14949732-14949751 | Msa0491970:intron | 15.0% |
| !! | ATTTCAAATTAAACACTTAT+GGG | - | chr3_4:14950355-14950374 | None:intergenic | 15.0% |
| !! | TATTTCAAATTAAACACTTA+TGG | - | chr3_4:14950356-14950375 | None:intergenic | 15.0% |
| !!! | GAAACAGAATAATTATTTTC+AGG | - | chr3_4:14949110-14949129 | None:intergenic | 20.0% |
| !! | GAAAATAATTATTCTGTTTC+AGG | + | chr3_4:14949110-14949129 | Msa0491970:CDS | 20.0% |
| !! | TTGTTCACGATAAATATAAA+AGG | - | chr3_4:14949263-14949282 | None:intergenic | 20.0% |
| !!! | TATATGTCAAAATTTTGTCA+TGG | + | chr3_4:14949523-14949542 | Msa0491970:intron | 20.0% |
| !! | GTCATTGCTAAAATATATAT+AGG | + | chr3_4:14949754-14949773 | Msa0491970:intron | 20.0% |
| !! | GTTCAAAAACTACATATAAA+CGG | + | chr3_4:14949782-14949801 | Msa0491970:intron | 20.0% |
| !! | ACAATATATTAGAAAACGAT+AGG | - | chr3_4:14949998-14950017 | None:intergenic | 20.0% |
| !! | TTTCTATATGAAATTCCAAA+AGG | - | chr3_4:14950405-14950424 | None:intergenic | 20.0% |
| !!! | GAAACAGAATAATTATTTTC+AGG | - | chr3_4:14949110-14949129 | None:intergenic | 20.0% |
| !! | GAAAATAATTATTCTGTTTC+AGG | + | chr3_4:14949110-14949129 | Msa0491970:CDS | 20.0% |
| !! | TTGTTCACGATAAATATAAA+AGG | - | chr3_4:14949263-14949282 | None:intergenic | 20.0% |
| !!! | TATATGTCAAAATTTTGTCA+TGG | + | chr3_4:14949523-14949542 | Msa0491970:intron | 20.0% |
| !! | GTCATTGCTAAAATATATAT+AGG | + | chr3_4:14949754-14949773 | Msa0491970:intron | 20.0% |
| !! | GTTCAAAAACTACATATAAA+CGG | + | chr3_4:14949782-14949801 | Msa0491970:intron | 20.0% |
| !! | ACAATATATTAGAAAACGAT+AGG | - | chr3_4:14949998-14950017 | None:intergenic | 20.0% |
| !! | TTTCTATATGAAATTCCAAA+AGG | - | chr3_4:14950405-14950424 | None:intergenic | 20.0% |
| ! | AAATATTTGTGGTAAGAAGT+AGG | - | chr3_4:14948844-14948863 | None:intergenic | 25.0% |
| !! | ATAATTATTCTGTTTCAGGT+TGG | + | chr3_4:14949114-14949133 | Msa0491970:intron | 25.0% |
| ! | AGGAATTCCCTAAAAAAAAA+AGG | - | chr3_4:14949243-14949262 | None:intergenic | 25.0% |
| !!! | TTTTCTAAGAGCACAAAATT+GGG | + | chr3_4:14949586-14949605 | Msa0491970:intron | 25.0% |
| ! | TATTGATGAAATGAAGATCA+AGG | - | chr3_4:14950175-14950194 | None:intergenic | 25.0% |
| !! | AAAGCATTTAAGAAAAACTC+AGG | - | chr3_4:14950200-14950219 | None:intergenic | 25.0% |
| ! | ATATGAAATTCCAAAAGGAA+TGG | - | chr3_4:14950400-14950419 | None:intergenic | 25.0% |
| !! | GTACTTGTTCTTTATTTACA+TGG | + | chr3_4:14950465-14950484 | Msa0491970:three_prime_UTR | 25.0% |
| ! | AAATATTTGTGGTAAGAAGT+AGG | - | chr3_4:14948844-14948863 | None:intergenic | 25.0% |
| !! | ATAATTATTCTGTTTCAGGT+TGG | + | chr3_4:14949114-14949133 | Msa0491970:intron | 25.0% |
| ! | AGGAATTCCCTAAAAAAAAA+AGG | - | chr3_4:14949243-14949262 | None:intergenic | 25.0% |
| !!! | TTTTCTAAGAGCACAAAATT+GGG | + | chr3_4:14949586-14949605 | Msa0491970:intron | 25.0% |
| ! | TATTGATGAAATGAAGATCA+AGG | - | chr3_4:14950175-14950194 | None:intergenic | 25.0% |
| !! | AAAGCATTTAAGAAAAACTC+AGG | - | chr3_4:14950200-14950219 | None:intergenic | 25.0% |
| ! | ATATGAAATTCCAAAAGGAA+TGG | - | chr3_4:14950400-14950419 | None:intergenic | 25.0% |
| !! | GTACTTGTTCTTTATTTACA+TGG | + | chr3_4:14950465-14950484 | Msa0491970:three_prime_UTR | 25.0% |
| ! | ATGTTGTTTGTGAATCAATG+TGG | - | chr3_4:14948737-14948756 | None:intergenic | 30.0% |
| ! | CAGTATTGTAAGAAGCTTTT+CGG | - | chr3_4:14948799-14948818 | None:intergenic | 30.0% |
| TCCTTTCGAAAAAAGATTCT+TGG | + | chr3_4:14949059-14949078 | Msa0491970:CDS | 30.0% | |
| !!! | TCCAAGAATCTTTTTTCGAA+AGG | - | chr3_4:14949063-14949082 | None:intergenic | 30.0% |
| !! | AGTTTTATGAAAGACGATTG+TGG | + | chr3_4:14949371-14949390 | Msa0491970:intron | 30.0% |
| !! | GTTTTCTAAGAGCACAAAAT+TGG | + | chr3_4:14949585-14949604 | Msa0491970:intron | 30.0% |
| !!! | TTGTTGCACACTTTTAAGAT+CGG | + | chr3_4:14949843-14949862 | Msa0491970:intron | 30.0% |
| AAACGATAGGCTTATATGTT+TGG | - | chr3_4:14949985-14950004 | None:intergenic | 30.0% | |
| ATCAAGATCACCAAATGTTT+GGG | + | chr3_4:14950064-14950083 | Msa0491970:CDS | 30.0% | |
| GGCAAAAATTGAAACATCTA+AGG | + | chr3_4:14950329-14950348 | Msa0491970:exon | 30.0% | |
| ! | ATGTTGTTTGTGAATCAATG+TGG | - | chr3_4:14948737-14948756 | None:intergenic | 30.0% |
| ! | CAGTATTGTAAGAAGCTTTT+CGG | - | chr3_4:14948799-14948818 | None:intergenic | 30.0% |
| TCCTTTCGAAAAAAGATTCT+TGG | + | chr3_4:14949059-14949078 | Msa0491970:CDS | 30.0% | |
| !!! | TCCAAGAATCTTTTTTCGAA+AGG | - | chr3_4:14949063-14949082 | None:intergenic | 30.0% |
| !! | AGTTTTATGAAAGACGATTG+TGG | + | chr3_4:14949371-14949390 | Msa0491970:intron | 30.0% |
| !! | GTTTTCTAAGAGCACAAAAT+TGG | + | chr3_4:14949585-14949604 | Msa0491970:intron | 30.0% |
| !!! | TTGTTGCACACTTTTAAGAT+CGG | + | chr3_4:14949843-14949862 | Msa0491970:intron | 30.0% |
| AAACGATAGGCTTATATGTT+TGG | - | chr3_4:14949985-14950004 | None:intergenic | 30.0% | |
| ATCAAGATCACCAAATGTTT+GGG | + | chr3_4:14950064-14950083 | Msa0491970:CDS | 30.0% | |
| GGCAAAAATTGAAACATCTA+AGG | + | chr3_4:14950329-14950348 | Msa0491970:exon | 30.0% | |
| TGATTCACAAACAACATGTC+TGG | + | chr3_4:14948740-14948759 | Msa0491970:exon | 35.0% | |
| GATTCACAAACAACATGTCT+GGG | + | chr3_4:14948741-14948760 | Msa0491970:exon | 35.0% | |
| ! | CAACATGTCTGGGATAATTA+AGG | + | chr3_4:14948751-14948770 | Msa0491970:exon | 35.0% |
| CGAAAAGCTTCTTACAATAC+TGG | + | chr3_4:14948797-14948816 | Msa0491970:CDS | 35.0% | |
| ! | TGAGTTGAGCAAAAATGTTG+AGG | + | chr3_4:14948947-14948966 | Msa0491970:CDS | 35.0% |
| GAGTTGAGCAAAAATGTTGA+GGG | + | chr3_4:14948948-14948967 | Msa0491970:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_4:14949008-14949027 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGAAAGA+AGG | + | chr3_4:14949014-14949033 | Msa0491970:CDS | 35.0% | |
| ACACTGATCTTGAGAAAGAA+GGG | + | chr3_4:14949015-14949034 | Msa0491970:CDS | 35.0% | |
| CGAAAGGATTCAACTTCAAT+TGG | - | chr3_4:14949047-14949066 | None:intergenic | 35.0% | |
| !! | TTTCAGGTTGGTAAACATCA+TGG | + | chr3_4:14949126-14949145 | Msa0491970:intron | 35.0% |
| AAACAAAAATGTCAGCACTC+AGG | + | chr3_4:14949281-14949300 | Msa0491970:intron | 35.0% | |
| TTGTGCTCTTAGAAAACACA+TGG | - | chr3_4:14949582-14949601 | None:intergenic | 35.0% | |
| ! | TACTCTAAAAACTACCCAAG+CGG | - | chr3_4:14949958-14949977 | None:intergenic | 35.0% |
| ACTAAAGAATGCACTTGACT+GGG | + | chr3_4:14950040-14950059 | Msa0491970:CDS | 35.0% | |
| CATCAAGATCACCAAATGTT+TGG | + | chr3_4:14950063-14950082 | Msa0491970:CDS | 35.0% | |
| CAATATCATCTCCGACAAAT+CGG | + | chr3_4:14950143-14950162 | Msa0491970:CDS | 35.0% | |
| ! | TCACTGTTAAATTTTGCTGG+AGG | - | chr3_4:14950227-14950246 | None:intergenic | 35.0% |
| ! | CCATCACTGTTAAATTTTGC+TGG | - | chr3_4:14950230-14950249 | None:intergenic | 35.0% |
| CCAGCAAAATTTAACAGTGA+TGG | + | chr3_4:14950227-14950246 | Msa0491970:CDS | 35.0% | |
| AATTGCCAACAACCTATTCT+TGG | - | chr3_4:14950273-14950292 | None:intergenic | 35.0% | |
| !!! | GGCAATTCTTTTTTCCTTGA+AGG | + | chr3_4:14950286-14950305 | Msa0491970:CDS | 35.0% |
| ! | GAATTTCACTCCATTCCTTT+TGG | + | chr3_4:14950387-14950406 | Msa0491970:three_prime_UTR | 35.0% |
| TGATTCACAAACAACATGTC+TGG | + | chr3_4:14948740-14948759 | Msa0491970:exon | 35.0% | |
| GATTCACAAACAACATGTCT+GGG | + | chr3_4:14948741-14948760 | Msa0491970:exon | 35.0% | |
| ! | CAACATGTCTGGGATAATTA+AGG | + | chr3_4:14948751-14948770 | Msa0491970:exon | 35.0% |
| CGAAAAGCTTCTTACAATAC+TGG | + | chr3_4:14948797-14948816 | Msa0491970:CDS | 35.0% | |
| ! | TGAGTTGAGCAAAAATGTTG+AGG | + | chr3_4:14948947-14948966 | Msa0491970:CDS | 35.0% |
| GAGTTGAGCAAAAATGTTGA+GGG | + | chr3_4:14948948-14948967 | Msa0491970:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_4:14949008-14949027 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGAAAGA+AGG | + | chr3_4:14949014-14949033 | Msa0491970:CDS | 35.0% | |
| ACACTGATCTTGAGAAAGAA+GGG | + | chr3_4:14949015-14949034 | Msa0491970:CDS | 35.0% | |
| CGAAAGGATTCAACTTCAAT+TGG | - | chr3_4:14949047-14949066 | None:intergenic | 35.0% | |
| !! | TTTCAGGTTGGTAAACATCA+TGG | + | chr3_4:14949126-14949145 | Msa0491970:intron | 35.0% |
| AAACAAAAATGTCAGCACTC+AGG | + | chr3_4:14949281-14949300 | Msa0491970:intron | 35.0% | |
| TTGTGCTCTTAGAAAACACA+TGG | - | chr3_4:14949582-14949601 | None:intergenic | 35.0% | |
| ! | TACTCTAAAAACTACCCAAG+CGG | - | chr3_4:14949958-14949977 | None:intergenic | 35.0% |
| ACTAAAGAATGCACTTGACT+GGG | + | chr3_4:14950040-14950059 | Msa0491970:CDS | 35.0% | |
| CATCAAGATCACCAAATGTT+TGG | + | chr3_4:14950063-14950082 | Msa0491970:CDS | 35.0% | |
| CAATATCATCTCCGACAAAT+CGG | + | chr3_4:14950143-14950162 | Msa0491970:CDS | 35.0% | |
| ! | TCACTGTTAAATTTTGCTGG+AGG | - | chr3_4:14950227-14950246 | None:intergenic | 35.0% |
| ! | CCATCACTGTTAAATTTTGC+TGG | - | chr3_4:14950230-14950249 | None:intergenic | 35.0% |
| CCAGCAAAATTTAACAGTGA+TGG | + | chr3_4:14950227-14950246 | Msa0491970:CDS | 35.0% | |
| AATTGCCAACAACCTATTCT+TGG | - | chr3_4:14950273-14950292 | None:intergenic | 35.0% | |
| !!! | GGCAATTCTTTTTTCCTTGA+AGG | + | chr3_4:14950286-14950305 | Msa0491970:CDS | 35.0% |
| ! | GAATTTCACTCCATTCCTTT+TGG | + | chr3_4:14950387-14950406 | Msa0491970:three_prime_UTR | 35.0% |
| ATTAAGGTTGCTGCACTTTC+TGG | + | chr3_4:14948767-14948786 | Msa0491970:CDS | 40.0% | |
| AAATACAAGAAGACCCCACA+GGG | - | chr3_4:14949153-14949172 | None:intergenic | 40.0% | |
| AAAATACAAGAAGACCCCAC+AGG | - | chr3_4:14949154-14949173 | None:intergenic | 40.0% | |
| CAGTCAAGTGCATTCTTTAG+TGG | - | chr3_4:14950041-14950060 | None:intergenic | 40.0% | |
| CACTAAAGAATGCACTTGAC+TGG | + | chr3_4:14950039-14950058 | Msa0491970:CDS | 40.0% | |
| ! | CAAGGAAAACTCCGATTTGT+CGG | - | chr3_4:14950157-14950176 | None:intergenic | 40.0% |
| TCGATGAAGATGCCAAGAAT+AGG | + | chr3_4:14950258-14950277 | Msa0491970:CDS | 40.0% | |
| AGATGCCAAGAATAGGTTGT+TGG | + | chr3_4:14950265-14950284 | Msa0491970:CDS | 40.0% | |
| TTGCAGAGTAAATGCCTTCA+AGG | - | chr3_4:14950303-14950322 | None:intergenic | 40.0% | |
| GCATTTACTCTGCAACTTCA+AGG | + | chr3_4:14950308-14950327 | Msa0491970:CDS | 40.0% | |
| ATTAAGGTTGCTGCACTTTC+TGG | + | chr3_4:14948767-14948786 | Msa0491970:CDS | 40.0% | |
| AAATACAAGAAGACCCCACA+GGG | - | chr3_4:14949153-14949172 | None:intergenic | 40.0% | |
| AAAATACAAGAAGACCCCAC+AGG | - | chr3_4:14949154-14949173 | None:intergenic | 40.0% | |
| CAGTCAAGTGCATTCTTTAG+TGG | - | chr3_4:14950041-14950060 | None:intergenic | 40.0% | |
| CACTAAAGAATGCACTTGAC+TGG | + | chr3_4:14950039-14950058 | Msa0491970:CDS | 40.0% | |
| ! | CAAGGAAAACTCCGATTTGT+CGG | - | chr3_4:14950157-14950176 | None:intergenic | 40.0% |
| TCGATGAAGATGCCAAGAAT+AGG | + | chr3_4:14950258-14950277 | Msa0491970:CDS | 40.0% | |
| AGATGCCAAGAATAGGTTGT+TGG | + | chr3_4:14950265-14950284 | Msa0491970:CDS | 40.0% | |
| TTGCAGAGTAAATGCCTTCA+AGG | - | chr3_4:14950303-14950322 | None:intergenic | 40.0% | |
| GCATTTACTCTGCAACTTCA+AGG | + | chr3_4:14950308-14950327 | Msa0491970:CDS | 40.0% | |
| ! | AATACTGGTCTCATCCGTTC+TGG | + | chr3_4:14948812-14948831 | Msa0491970:CDS | 45.0% |
| GAAGTAGGAACCAACCAGAA+CGG | - | chr3_4:14948829-14948848 | None:intergenic | 45.0% | |
| GTAAACATCATGGTCCCTGT+GGG | + | chr3_4:14949136-14949155 | Msa0491970:intron | 45.0% | |
| TAAACATCATGGTCCCTGTG+GGG | + | chr3_4:14949137-14949156 | Msa0491970:intron | 45.0% | |
| !! | CTGTCGTTTGACTTTTCCAG+TGG | + | chr3_4:14949809-14949828 | Msa0491970:intron | 45.0% |
| AACAACTGTTTGACTGCCAC+TGG | - | chr3_4:14949828-14949847 | None:intergenic | 45.0% | |
| TCTAAAAACTACCCAAGCGG+CGG | - | chr3_4:14949955-14949974 | None:intergenic | 45.0% | |
| AGATCACCAAATGTTTGGGC+TGG | + | chr3_4:14950068-14950087 | Msa0491970:CDS | 45.0% | |
| GGTTTACCAGCCCAAACATT+TGG | - | chr3_4:14950077-14950096 | None:intergenic | 45.0% | |
| ! | AATACTGGTCTCATCCGTTC+TGG | + | chr3_4:14948812-14948831 | Msa0491970:CDS | 45.0% |
| GAAGTAGGAACCAACCAGAA+CGG | - | chr3_4:14948829-14948848 | None:intergenic | 45.0% | |
| GTAAACATCATGGTCCCTGT+GGG | + | chr3_4:14949136-14949155 | Msa0491970:intron | 45.0% | |
| TAAACATCATGGTCCCTGTG+GGG | + | chr3_4:14949137-14949156 | Msa0491970:intron | 45.0% | |
| !! | CTGTCGTTTGACTTTTCCAG+TGG | + | chr3_4:14949809-14949828 | Msa0491970:intron | 45.0% |
| AACAACTGTTTGACTGCCAC+TGG | - | chr3_4:14949828-14949847 | None:intergenic | 45.0% | |
| TCTAAAAACTACCCAAGCGG+CGG | - | chr3_4:14949955-14949974 | None:intergenic | 45.0% | |
| AGATCACCAAATGTTTGGGC+TGG | + | chr3_4:14950068-14950087 | Msa0491970:CDS | 45.0% | |
| GGTTTACCAGCCCAAACATT+TGG | - | chr3_4:14950077-14950096 | None:intergenic | 45.0% | |
| !! | AAAAATAAATAAAATATTTG+TGG | - | chr3_4:14948855-14948874 | None:intergenic | 5.0% |
| !!! | TTGAATTTTTATTTATAAAA+TGG | + | chr3_4:14949336-14949355 | Msa0491970:intron | 5.0% |
| !!! | TGAATTTTTATTTATAAAAT+GGG | + | chr3_4:14949337-14949356 | Msa0491970:intron | 5.0% |
| !! | AAAAATAAATAAAATATTTG+TGG | - | chr3_4:14948855-14948874 | None:intergenic | 5.0% |
| !!! | TTGAATTTTTATTTATAAAA+TGG | + | chr3_4:14949336-14949355 | Msa0491970:intron | 5.0% |
| !!! | TGAATTTTTATTTATAAAAT+GGG | + | chr3_4:14949337-14949356 | Msa0491970:intron | 5.0% |
| GGTAAACATCATGGTCCCTG+TGG | + | chr3_4:14949135-14949154 | Msa0491970:intron | 50.0% | |
| !! | TGTTTGGGCTGGTAAACCTG+CGG | + | chr3_4:14950079-14950098 | Msa0491970:CDS | 50.0% |
| GGTAAACATCATGGTCCCTG+TGG | + | chr3_4:14949135-14949154 | Msa0491970:intron | 50.0% | |
| !! | TGTTTGGGCTGGTAAACCTG+CGG | + | chr3_4:14950079-14950098 | Msa0491970:CDS | 50.0% |
| CTGGTCTCATCCGTTCTGGT+TGG | + | chr3_4:14948816-14948835 | Msa0491970:intron | 55.0% | |
| CAACGACAGTTAACTGCCGC+CGG | + | chr3_4:14949916-14949935 | Msa0491970:intron | 55.0% | |
| !!! | CGGTCGTTTAGCTTTTCCGG+CGG | - | chr3_4:14949935-14949954 | None:intergenic | 55.0% |
| !!! | CGGCGGTCGTTTAGCTTTTC+CGG | - | chr3_4:14949938-14949957 | None:intergenic | 55.0% |
| AAAGCTAAACGACCGCCGCT+TGG | + | chr3_4:14949940-14949959 | Msa0491970:intron | 55.0% | |
| AAGCTAAACGACCGCCGCTT+GGG | + | chr3_4:14949941-14949960 | Msa0491970:intron | 55.0% | |
| !! | GCAATAGTGAGTGCTGGAGG+AGG | + | chr3_4:14950101-14950120 | Msa0491970:CDS | 55.0% |
| CTGGTCTCATCCGTTCTGGT+TGG | + | chr3_4:14948816-14948835 | Msa0491970:intron | 55.0% | |
| CAACGACAGTTAACTGCCGC+CGG | + | chr3_4:14949916-14949935 | Msa0491970:intron | 55.0% | |
| !!! | CGGTCGTTTAGCTTTTCCGG+CGG | - | chr3_4:14949935-14949954 | None:intergenic | 55.0% |
| !!! | CGGCGGTCGTTTAGCTTTTC+CGG | - | chr3_4:14949938-14949957 | None:intergenic | 55.0% |
| AAAGCTAAACGACCGCCGCT+TGG | + | chr3_4:14949940-14949959 | Msa0491970:intron | 55.0% | |
| AAGCTAAACGACCGCCGCTT+GGG | + | chr3_4:14949941-14949960 | Msa0491970:intron | 55.0% | |
| !! | GCAATAGTGAGTGCTGGAGG+AGG | + | chr3_4:14950101-14950120 | Msa0491970:CDS | 55.0% |
| CCAGCACTCACTATTGCCGC+AGG | - | chr3_4:14950098-14950117 | None:intergenic | 60.0% | |
| CCTGCGGCAATAGTGAGTGC+TGG | + | chr3_4:14950095-14950114 | Msa0491970:CDS | 60.0% | |
| !! | GCGGCAATAGTGAGTGCTGG+AGG | + | chr3_4:14950098-14950117 | Msa0491970:CDS | 60.0% |
| !! | GTGAGTGCTGGAGGAGGACA+TGG | + | chr3_4:14950107-14950126 | Msa0491970:CDS | 60.0% |
| ! | AGTGCTGGAGGAGGACATGG+TGG | + | chr3_4:14950110-14950129 | Msa0491970:CDS | 60.0% |
| CCAGCACTCACTATTGCCGC+AGG | - | chr3_4:14950098-14950117 | None:intergenic | 60.0% | |
| CCTGCGGCAATAGTGAGTGC+TGG | + | chr3_4:14950095-14950114 | Msa0491970:CDS | 60.0% | |
| !! | GCGGCAATAGTGAGTGCTGG+AGG | + | chr3_4:14950098-14950117 | Msa0491970:CDS | 60.0% |
| !! | GTGAGTGCTGGAGGAGGACA+TGG | + | chr3_4:14950107-14950126 | Msa0491970:CDS | 60.0% |
| ! | AGTGCTGGAGGAGGACATGG+TGG | + | chr3_4:14950110-14950129 | Msa0491970:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 14948693 | 14950535 | 14948693 | ID=Msa0491970;Name=Msa0491970 |
| chr3_4 | mRNA | 14948693 | 14950535 | 14948693 | ID=Msa0491970-mRNA-1;Parent=Msa0491970;Name=Msa0491970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=62|1|0.66|1|1|1|3|195|190 |
| chr3_4 | exon | 14948693 | 14948833 | 14948693 | ID=Msa0491970-mRNA-1:exon:4406;Parent=Msa0491970-mRNA-1 |
| chr3_4 | exon | 14948943 | 14949131 | 14948943 | ID=Msa0491970-mRNA-1:exon:4407;Parent=Msa0491970-mRNA-1 |
| chr3_4 | exon | 14950036 | 14950535 | 14950036 | ID=Msa0491970-mRNA-1:exon:4408;Parent=Msa0491970-mRNA-1 |
| chr3_4 | five_prime_UTR | 14948693 | 14948754 | 14948693 | ID=Msa0491970-mRNA-1:five_prime_utr;Parent=Msa0491970-mRNA-1 |
| chr3_4 | CDS | 14948755 | 14948833 | 14948755 | ID=Msa0491970-mRNA-1:cds;Parent=Msa0491970-mRNA-1 |
| chr3_4 | CDS | 14948943 | 14949131 | 14948943 | ID=Msa0491970-mRNA-1:cds;Parent=Msa0491970-mRNA-1 |
| chr3_4 | CDS | 14950036 | 14950340 | 14950036 | ID=Msa0491970-mRNA-1:cds;Parent=Msa0491970-mRNA-1 |
| chr3_4 | three_prime_UTR | 14950341 | 14950535 | 14950341 | ID=Msa0491970-mRNA-1:three_prime_utr;Parent=Msa0491970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
