Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713290 | XP_003611397.1 | 85.195 | 385 | 7 | 1 | 1 | 385 | 1 | 335 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713290 | G7JYM1 | 85.195 | 385 | 7 | 1 | 1 | 385 | 1 | 335 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0656320 | Msa0713290 | 0.800247 | 1.576504e-48 | -8.615850e-47 |
| Msa0713290 | Msa0755010 | 0.958710 | 1.199674e-116 | -8.615850e-47 |
| Msa0713290 | Msa0794240 | 0.803788 | 2.948589e-49 | -8.615850e-47 |
| Msa0713290 | Msa0815650 | 0.801692 | 7.985726e-49 | -8.615850e-47 |
| Msa0713290 | Msa0826370 | 0.800854 | 1.185240e-48 | -8.615850e-47 |
| Msa0713290 | Msa0998790 | 0.819740 | 9.908456e-53 | -8.615850e-47 |
| Msa0713290 | Msa1041260 | 0.814398 | 1.572231e-51 | -8.615850e-47 |
| Msa0713290 | Msa1087630 | 0.803989 | 2.678302e-49 | -8.615850e-47 |
| Msa0713290 | Msa1165660 | 0.834069 | 3.710018e-56 | -8.615850e-47 |
| Msa0713290 | Msa1179340 | 0.833188 | 6.155942e-56 | -8.615850e-47 |
| Msa0713290 | Msa1233090 | 0.823454 | 1.372930e-53 | -8.615850e-47 |
| Msa0713290 | Msa1275220 | 0.822325 | 2.516238e-53 | -8.615850e-47 |
| Msa0713290 | Msa1309040 | 0.809715 | 1.650203e-50 | -8.615850e-47 |
| Msa0713290 | Msa1313720 | 0.808346 | 3.239499e-50 | -8.615850e-47 |
| Msa0713290 | Msa1366470 | 0.823524 | 1.322573e-53 | -8.615850e-47 |
| Msa0713290 | Msa1383500 | 0.802484 | 5.487908e-49 | -8.615850e-47 |
| Msa0713290 | Msa1402160 | 0.810291 | 1.240296e-50 | -8.615850e-47 |
| Msa0148000 | Msa0713290 | -0.804546 | 2.050877e-49 | -8.615850e-47 |
| Msa0173120 | Msa0713290 | 0.808123 | 3.614924e-50 | -8.615850e-47 |
| Msa0186030 | Msa0713290 | 0.810992 | 8.747514e-51 | -8.615850e-47 |
| Msa0236940 | Msa0713290 | 0.820173 | 7.886819e-53 | -8.615850e-47 |
| Msa0373550 | Msa0713290 | 0.809419 | 1.910039e-50 | -8.615850e-47 |
| Msa0430320 | Msa0713290 | 0.829440 | 5.141365e-55 | -8.615850e-47 |
| Msa0430460 | Msa0713290 | 0.806727 | 7.146466e-50 | -8.615850e-47 |
| Msa0468660 | Msa0713290 | 0.816479 | 5.412971e-52 | -8.615850e-47 |
| Msa0242720 | Msa0713290 | 0.810495 | 1.120287e-50 | -8.615850e-47 |
| Msa0491970 | Msa0713290 | 0.803428 | 3.502697e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713290 | MtrunA17_Chr5g0399901 | 85.195 | 385 | 7 | 1 | 1 | 385 | 1 | 335 | 0.0 | 654 |
| Msa0713290 | MtrunA17_Chr7g0250211 | 47.244 | 381 | 143 | 5 | 1 | 379 | 1 | 325 | 9.21e-123 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713290 | AT4G17070.1 | 50.639 | 391 | 132 | 4 | 1 | 384 | 1 | 337 | 2.78e-137 | 395 |
Find 110 sgRNAs with CRISPR-Local
Find 514 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACGTACCTCGCCGAATT+TGG | 0.198643 | 5_1:-5410041 | None:intergenic |
| GGCCCTTCTTCTTGCCGTTC+AGG | 0.233733 | 5_1:-5411017 | None:intergenic |
| TGGACTTCTGGTCTCATCTT+TGG | 0.244257 | 5_1:+5411059 | Msa0713290:CDS |
| GACTCTCTGCACGGTAAAAT+TGG | 0.245884 | 5_1:-5411736 | None:intergenic |
| AATCAAACGGTTTAACAAAA+TGG | 0.290860 | 5_1:-5409705 | None:intergenic |
| GGATTGAACATTTGGAGCTT+TGG | 0.296628 | 5_1:+5409873 | Msa0713290:CDS |
| GTTTCGGAGTTTAGGAATAT+TGG | 0.308114 | 5_1:+5409800 | Msa0713290:CDS |
| GACCTTGTCTTTGTGATACT+TGG | 0.312234 | 5_1:+5409987 | Msa0713290:CDS |
| GATTGAACATTTGGAGCTTT+GGG | 0.313465 | 5_1:+5409874 | Msa0713290:CDS |
| TCTCATCATCTCGTTAAATA+TGG | 0.314570 | 5_1:+5409658 | Msa0713290:exon |
| GCTAAGCTAATAAAGAATTC+TGG | 0.321705 | 5_1:-5413194 | None:intergenic |
| TCTGCAACATTCATGTCTTC+AGG | 0.329643 | 5_1:-5413266 | None:intergenic |
| GAGATAATTAGTTGGACTTC+TGG | 0.330854 | 5_1:+5411047 | Msa0713290:CDS |
| TATTGGGTCAACGTTGGATT+TGG | 0.337581 | 5_1:+5409817 | Msa0713290:CDS |
| TTTGTAGGTTTCAATTCTTT+TGG | 0.341365 | 5_1:+5413417 | Msa0713290:three_prime_UTR |
| TTTGGGGTTCAGCTGTGAAA+TGG | 0.348730 | 5_1:+5409891 | Msa0713290:CDS |
| TTGGGGTTCAGCTGTGAAAT+GGG | 0.348739 | 5_1:+5409892 | Msa0713290:CDS |
| TTGTTTCAAAATTTCAATCT+TGG | 0.350197 | 5_1:-5413394 | None:intergenic |
| TTGTAGAGGGATTGAACATT+TGG | 0.352124 | 5_1:+5409865 | Msa0713290:CDS |
| TTTCGGAGTTTAGGAATATT+GGG | 0.354752 | 5_1:+5409801 | Msa0713290:CDS |
| GTGGTTCTGTTTCGGAGTTT+AGG | 0.361159 | 5_1:+5409792 | Msa0713290:CDS |
| GCCCTTCTTCTTGCCGTTCA+GGG | 0.361547 | 5_1:-5411016 | None:intergenic |
| TCCCCACCTTACCTGATGTT+TGG | 0.362089 | 5_1:+5413303 | Msa0713290:CDS |
| TACCTTGAATTAATGCAAAT+GGG | 0.369067 | 5_1:-5413079 | None:intergenic |
| CGGCAAGAAGAAGGGCCTAA+TGG | 0.375581 | 5_1:+5411023 | Msa0713290:CDS |
| AACAAGAAGTGGTTCTGTTT+CGG | 0.378933 | 5_1:+5409784 | Msa0713290:CDS |
| GGCAAGAAGAAGGGCCTAAT+GGG | 0.381464 | 5_1:+5411024 | Msa0713290:CDS |
| TCTTGTAAATCTATGTGTAC+TGG | 0.387269 | 5_1:+5409956 | Msa0713290:CDS |
| ACTGAACCTCTTCTTAAGAT+TGG | 0.389494 | 5_1:-5413152 | None:intergenic |
| AGAGGTTCAGTTGCTTTAAT+CGG | 0.390617 | 5_1:+5413164 | Msa0713290:CDS |
| TTATTGTTTGTTGTGTGAAT+CGG | 0.397286 | 5_1:+5410507 | Msa0713290:CDS |
| GTACCTTGAATTAATGCAAA+TGG | 0.397660 | 5_1:-5413080 | None:intergenic |
| TTGAAAATACGTATAAGCTT+TGG | 0.403355 | 5_1:-5413442 | None:intergenic |
| CTTCTGAGCAAGAAAGGAAC+GGG | 0.412860 | 5_1:-5413356 | None:intergenic |
| GGAACTTGCCTGTTTAGGCT+TGG | 0.416679 | 5_1:+5410449 | Msa0713290:CDS |
| TCAGAGATGAGATTGAATAA+AGG | 0.419151 | 5_1:-5409629 | None:intergenic |
| TTGCTAATCCAAGCCTAAAC+AGG | 0.421973 | 5_1:-5410457 | None:intergenic |
| CAACTAATTATCTCCCCATT+AGG | 0.432956 | 5_1:-5411038 | None:intergenic |
| CCCTCACTGTGCTCCACACA+CGG | 0.436663 | 5_1:+5411667 | Msa0713290:CDS |
| TATTGTTTGTTGTGTGAATC+GGG | 0.439905 | 5_1:+5410508 | Msa0713290:CDS |
| TCCACAGGAAGTTTATTGAA+TGG | 0.445167 | 5_1:-5413122 | None:intergenic |
| TCTGGTCTCATCTTTGGAAA+AGG | 0.445432 | 5_1:+5411065 | Msa0713290:CDS |
| TTGATTCTTCTGAGCAAGAA+AGG | 0.445719 | 5_1:-5413362 | None:intergenic |
| TTTCCAGGGTATTATTGGAT+TGG | 0.446563 | 5_1:+5411408 | Msa0713290:intron |
| TTGCCTATGCGCCATTGTGC+AGG | 0.450005 | 5_1:+5411710 | Msa0713290:CDS |
| TATATATATCCGTTCTCAAA+TGG | 0.450907 | 5_1:-5413582 | None:intergenic |
| AGGCAACAGTTCTAGAATAT+AGG | 0.454860 | 5_1:-5411693 | None:intergenic |
| TTAACATTGTTCCAAACATC+AGG | 0.456879 | 5_1:-5413314 | None:intergenic |
| ATGTTGAAGGGTGTTGTAGA+GGG | 0.459948 | 5_1:+5409852 | Msa0713290:CDS |
| CAGAGAGTCGAGGTCAATCA+TGG | 0.465585 | 5_1:+5411750 | Msa0713290:CDS |
| GCCCCTGAACGGCAAGAAGA+AGG | 0.471860 | 5_1:+5411014 | Msa0713290:CDS |
| GAGGCTTGTGGATCCAAATT+CGG | 0.472505 | 5_1:+5410028 | Msa0713290:CDS |
| TGTGGGAATCGGGAGGCTTG+TGG | 0.475012 | 5_1:+5410016 | Msa0713290:CDS |
| TCTATGTGTACTGGGAAAGA+TGG | 0.477675 | 5_1:+5409965 | Msa0713290:CDS |
| GCTAATAAAGAATTCTGGAC+CGG | 0.479091 | 5_1:-5413189 | None:intergenic |
| CTTGTAAATCTATGTGTACT+GGG | 0.480690 | 5_1:+5409957 | Msa0713290:CDS |
| ATTTAACGAGATGATGAGAA+TGG | 0.481364 | 5_1:-5409654 | None:intergenic |
| TCAGACCGAAGTAGTATCTC+AGG | 0.486895 | 5_1:+5410757 | Msa0713290:intron |
| CTCTCTGCAGTAACAAGAAG+TGG | 0.492856 | 5_1:+5409773 | Msa0713290:CDS |
| TCAGTTGCTTTAATCGGTCC+CGG | 0.494464 | 5_1:+5413170 | Msa0713290:CDS |
| CAGCCTGCACAATGGCGCAT+AGG | 0.495252 | 5_1:-5411713 | None:intergenic |
| CGGTTTAACAAAATGGTGCT+TGG | 0.500683 | 5_1:-5409698 | None:intergenic |
| CCCCTGAACGGCAAGAAGAA+GGG | 0.504864 | 5_1:+5411015 | Msa0713290:CDS |
| ACCTTGTCTTTGTGATACTT+GGG | 0.507565 | 5_1:+5409988 | Msa0713290:CDS |
| AATGTTGAAGGGTGTTGTAG+AGG | 0.532744 | 5_1:+5409851 | Msa0713290:CDS |
| CCCTTCTTCTTGCCGTTCAG+GGG | 0.536761 | 5_1:-5411015 | None:intergenic |
| TTCCAAACATCAGGTAAGGT+GGG | 0.540243 | 5_1:-5413305 | None:intergenic |
| AGAATATAGGCAACCGTGTG+TGG | 0.540739 | 5_1:-5411680 | None:intergenic |
| CGAGACTAATCTCTCGAGCC+AGG | 0.541495 | 5_1:+5410541 | Msa0713290:CDS |
| TGTTATAACATAGTCAAACT+TGG | 0.546544 | 5_1:+5409550 | Msa0713290:five_prime_UTR |
| GCTTAGCTGATCATTCAGAA+TGG | 0.548215 | 5_1:+5413210 | Msa0713290:CDS |
| GTTGGTGAGAAGAATGTTGA+AGG | 0.552001 | 5_1:+5409839 | Msa0713290:CDS |
| TGGGGTTCAGCTGTGAAATG+GGG | 0.556980 | 5_1:+5409893 | Msa0713290:CDS |
| ATTGTTCCAAACATCAGGTA+AGG | 0.563809 | 5_1:-5413309 | None:intergenic |
| GTTCCAAACATCAGGTAAGG+TGG | 0.566546 | 5_1:-5413306 | None:intergenic |
| AAGATTGGACAATCTTCCAC+AGG | 0.568792 | 5_1:-5413137 | None:intergenic |
| GGGTCAACGTTGGATTTGGT+TGG | 0.581467 | 5_1:+5409821 | Msa0713290:CDS |
| GATTGTCCAATCTTAAGAAG+AGG | 0.586819 | 5_1:+5413146 | Msa0713290:CDS |
| CTAATAAAGAATTCTGGACC+GGG | 0.590349 | 5_1:-5413188 | None:intergenic |
| AGGAACGGGTTTCTTCAAAA+CGG | 0.591662 | 5_1:-5413342 | None:intergenic |
| TCTTCTGAGCAAGAAAGGAA+CGG | 0.595069 | 5_1:-5413357 | None:intergenic |
| AAAGAGCTTCCATTTGAGAA+CGG | 0.598221 | 5_1:+5413573 | Msa0713290:three_prime_UTR |
| CTGGCTCGAGAGATTAGTCT+CGG | 0.602910 | 5_1:-5410540 | None:intergenic |
| CTAATGGGGAGATAATTAGT+TGG | 0.607611 | 5_1:+5411039 | Msa0713290:CDS |
| ATTGAACATTTGGAGCTTTG+GGG | 0.612386 | 5_1:+5409875 | Msa0713290:CDS |
| TAGGAATATTGGGTCAACGT+TGG | 0.612668 | 5_1:+5409811 | Msa0713290:CDS |
| GTGTTGGTTAAAGAAACAAA+AGG | 0.617424 | 5_1:+5410983 | Msa0713290:intron |
| ACCATTCAATAAACTTCCTG+TGG | 0.619644 | 5_1:+5413121 | Msa0713290:CDS |
| ACCTTGAATTAATGCAAATG+GGG | 0.619873 | 5_1:-5413078 | None:intergenic |
| CGAGAGATTAGTCTCGGCAG+AGG | 0.620527 | 5_1:-5410534 | None:intergenic |
| CAAGGTACATTAGAAGCACA+AGG | 0.623038 | 5_1:+5413095 | Msa0713290:CDS |
| TCCAAACATCAGGTAAGGTG+GGG | 0.625666 | 5_1:-5413304 | None:intergenic |
| AGGACAGCTTAGCCCCTGAA+CGG | 0.629415 | 5_1:+5411003 | Msa0713290:CDS |
| GGTCAATCATGGGATTCAGA+AGG | 0.629530 | 5_1:+5411761 | Msa0713290:CDS |
| ACCGTGTGTGGAGCACAGTG+AGG | 0.642211 | 5_1:-5411668 | None:intergenic |
| CACTTCTTGTTACTGCAGAG+AGG | 0.644712 | 5_1:-5409772 | None:intergenic |
| ATTGACCTCGACTCTCTGCA+CGG | 0.645340 | 5_1:-5411745 | None:intergenic |
| CCGTGTGTGGAGCACAGTGA+GGG | 0.647084 | 5_1:-5411667 | None:intergenic |
| ACCGAAGTAGTATCTCAGGT+TGG | 0.647560 | 5_1:+5410761 | Msa0713290:CDS |
| AGAGAGTCGAGGTCAATCAT+GGG | 0.649366 | 5_1:+5411751 | Msa0713290:CDS |
| ATTGGATTGGAAACTGAACA+CGG | 0.650566 | 5_1:+5411421 | Msa0713290:CDS |
| AGATGAGATTGAATAAAGGA+CGG | 0.661591 | 5_1:-5409625 | None:intergenic |
| TCTCATCTTTGGAAAAGGAG+AGG | 0.663105 | 5_1:+5411070 | Msa0713290:CDS |
| TCCAACCTGAGATACTACTT+CGG | 0.670636 | 5_1:-5410762 | None:intergenic |
| GCAAGAAGAAGGGCCTAATG+GGG | 0.681021 | 5_1:+5411025 | Msa0713290:CDS |
| AAAATTGGCAGCCTGCACAA+TGG | 0.683556 | 5_1:-5411721 | None:intergenic |
| CCTTGAATTAATGCAAATGG+GGG | 0.686229 | 5_1:-5413077 | None:intergenic |
| TTGGTGAGAAGAATGTTGAA+GGG | 0.704145 | 5_1:+5409840 | Msa0713290:CDS |
| ACCCAAGTATCACAAAGACA+AGG | 0.711556 | 5_1:-5409989 | None:intergenic |
| TTGTGGATCCAAATTCGGCG+AGG | 0.726847 | 5_1:+5410033 | Msa0713290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATGATAAAATTAGTT+CGG | + | chr5_1:5410684-5410703 | Msa0713290:intron | 10.0% |
| !!! | TTTAATTTAATTCAACAATT+TGG | + | chr5_1:5411280-5411299 | Msa0713290:intron | 10.0% |
| !!! | ATTTTTATTGGATTAAAAAA+GGG | - | chr5_1:5412733-5412752 | None:intergenic | 10.0% |
| !!! | AATTTTTATTGGATTAAAAA+AGG | - | chr5_1:5412734-5412753 | None:intergenic | 10.0% |
| !! | TAAATATGATAAAATTAGTT+CGG | + | chr5_1:5410684-5410703 | Msa0713290:intron | 10.0% |
| !!! | TTTAATTTAATTCAACAATT+TGG | + | chr5_1:5411280-5411299 | Msa0713290:intron | 10.0% |
| !!! | ATTTTTATTGGATTAAAAAA+GGG | - | chr5_1:5412733-5412752 | None:intergenic | 10.0% |
| !!! | AATTTTTATTGGATTAAAAA+AGG | - | chr5_1:5412734-5412753 | None:intergenic | 10.0% |
| !!! | AATGAACTTATTTTTTAAAC+CGG | - | chr5_1:5410403-5410422 | None:intergenic | 15.0% |
| !! | ATGTTAGTAAATTAAACTAA+TGG | + | chr5_1:5410786-5410805 | Msa0713290:intron | 15.0% |
| !! | TGTTAGTAAATTAAACTAAT+GGG | + | chr5_1:5410787-5410806 | Msa0713290:intron | 15.0% |
| !!! | ATTCTATTTTAAAATTGACT+TGG | + | chr5_1:5411124-5411143 | Msa0713290:intron | 15.0% |
| !!! | TTTGTAATCTCAATTTTTAT+TGG | - | chr5_1:5412745-5412764 | None:intergenic | 15.0% |
| !!! | TCTTCACTTAATTTTATTTT+TGG | + | chr5_1:5413524-5413543 | Msa0713290:three_prime_UTR | 15.0% |
| !!! | AATGAACTTATTTTTTAAAC+CGG | - | chr5_1:5410403-5410422 | None:intergenic | 15.0% |
| !! | ATGTTAGTAAATTAAACTAA+TGG | + | chr5_1:5410786-5410805 | Msa0713290:intron | 15.0% |
| !! | TGTTAGTAAATTAAACTAAT+GGG | + | chr5_1:5410787-5410806 | Msa0713290:intron | 15.0% |
| !!! | ATTCTATTTTAAAATTGACT+TGG | + | chr5_1:5411124-5411143 | Msa0713290:intron | 15.0% |
| !!! | TTTGTAATCTCAATTTTTAT+TGG | - | chr5_1:5412745-5412764 | None:intergenic | 15.0% |
| !!! | TCTTCACTTAATTTTATTTT+TGG | + | chr5_1:5413524-5413543 | Msa0713290:three_prime_UTR | 15.0% |
| !!! | TACAATAAAAAATTTGCTTC+CGG | + | chr5_1:5410381-5410400 | Msa0713290:intron | 20.0% |
| !! | AAAAAATAAGTCTGATTTAG+TGG | - | chr5_1:5410728-5410747 | None:intergenic | 20.0% |
| !!! | GAATTTTATCAACTTATGAA+AGG | + | chr5_1:5411344-5411363 | Msa0713290:intron | 20.0% |
| !!! | CGTATCTTACATTTTTTATA+TGG | - | chr5_1:5411790-5411809 | None:intergenic | 20.0% |
| !! | TACAACTATTAATGCAATTA+TGG | + | chr5_1:5411830-5411849 | Msa0713290:intron | 20.0% |
| !!! | ATCTATATGTGCTATTTTTT+TGG | + | chr5_1:5411966-5411985 | Msa0713290:intron | 20.0% |
| !! | ACAGTTAAATGAATCTAAAA+TGG | - | chr5_1:5412025-5412044 | None:intergenic | 20.0% |
| !! | TAACTGTATGAATTATTGTT+AGG | + | chr5_1:5412038-5412057 | Msa0713290:intron | 20.0% |
| !! | AAGAAAAAATAGTCCTAAAA+GGG | - | chr5_1:5412603-5412622 | None:intergenic | 20.0% |
| !! | TTGTTTCAAAATTTCAATCT+TGG | - | chr5_1:5413397-5413416 | None:intergenic | 20.0% |
| !!! | GAAATTTTGAAACAATTTGT+AGG | + | chr5_1:5413402-5413421 | Msa0713290:exon | 20.0% |
| !!! | TACAATAAAAAATTTGCTTC+CGG | + | chr5_1:5410381-5410400 | Msa0713290:intron | 20.0% |
| !! | AAAAAATAAGTCTGATTTAG+TGG | - | chr5_1:5410728-5410747 | None:intergenic | 20.0% |
| !!! | GAATTTTATCAACTTATGAA+AGG | + | chr5_1:5411344-5411363 | Msa0713290:intron | 20.0% |
| !!! | CGTATCTTACATTTTTTATA+TGG | - | chr5_1:5411790-5411809 | None:intergenic | 20.0% |
| !! | TACAACTATTAATGCAATTA+TGG | + | chr5_1:5411830-5411849 | Msa0713290:intron | 20.0% |
| !!! | ATCTATATGTGCTATTTTTT+TGG | + | chr5_1:5411966-5411985 | Msa0713290:intron | 20.0% |
| !! | ACAGTTAAATGAATCTAAAA+TGG | - | chr5_1:5412025-5412044 | None:intergenic | 20.0% |
| !! | TAACTGTATGAATTATTGTT+AGG | + | chr5_1:5412038-5412057 | Msa0713290:intron | 20.0% |
| !! | AAGAAAAAATAGTCCTAAAA+GGG | - | chr5_1:5412603-5412622 | None:intergenic | 20.0% |
| !! | TTGTTTCAAAATTTCAATCT+TGG | - | chr5_1:5413397-5413416 | None:intergenic | 20.0% |
| !!! | GAAATTTTGAAACAATTTGT+AGG | + | chr5_1:5413402-5413421 | Msa0713290:exon | 20.0% |
| ! | TGTTATAACATAGTCAAACT+TGG | + | chr5_1:5409550-5409569 | Msa0713290:five_prime_UTR | 25.0% |
| ! | AATCAAACGGTTTAACAAAA+TGG | - | chr5_1:5409708-5409727 | None:intergenic | 25.0% |
| ! | ACACAAAAAGAAGAATCAAA+CGG | - | chr5_1:5409721-5409740 | None:intergenic | 25.0% |
| ! | TGAAATAATCACAATTGACA+CGG | - | chr5_1:5410162-5410181 | None:intergenic | 25.0% |
| !!! | TTATTGTTTGTTGTGTGAAT+CGG | + | chr5_1:5410507-5410526 | Msa0713290:CDS | 25.0% |
| !! | CAAGATCAACTTTTTGTTAA+AGG | - | chr5_1:5410942-5410961 | None:intergenic | 25.0% |
| ! | GAACTTAATAACTTTCTTTC+AGG | - | chr5_1:5411187-5411206 | None:intergenic | 25.0% |
| ! | CATGTAATTTGGAGATAATT+AGG | - | chr5_1:5411230-5411249 | None:intergenic | 25.0% |
| ! | AACAGAAGAAACATGTAATT+TGG | - | chr5_1:5411241-5411260 | None:intergenic | 25.0% |
| !!! | AATTCATCTGTTTTTTTTCC+AGG | + | chr5_1:5411393-5411412 | Msa0713290:intron | 25.0% |
| !!! | ATTCATCTGTTTTTTTTCCA+GGG | + | chr5_1:5411394-5411413 | Msa0713290:intron | 25.0% |
| !!! | TTTTTTTTCCAGGGTATTAT+TGG | + | chr5_1:5411403-5411422 | Msa0713290:intron | 25.0% |
| !! | AAAGAAACATGGAAAGTATA+AGG | - | chr5_1:5411533-5411552 | None:intergenic | 25.0% |
| ! | TCATCATTACTAAAGAAACA+TGG | - | chr5_1:5411544-5411563 | None:intergenic | 25.0% |
| ! | AAACCATAATTATCATGTGA+CGG | - | chr5_1:5411580-5411599 | None:intergenic | 25.0% |
| ! | ACTATTAATGCAATTATGGT+AGG | + | chr5_1:5411834-5411853 | Msa0713290:intron | 25.0% |
| ! | CTCAACAAAACAATTCATAA+TGG | - | chr5_1:5411946-5411965 | None:intergenic | 25.0% |
| !! | CATATTTTTCTTGCTTTCAT+AGG | + | chr5_1:5411992-5412011 | Msa0713290:intron | 25.0% |
| !! | TTAAATGAATCTAAAATGGC+TGG | - | chr5_1:5412021-5412040 | None:intergenic | 25.0% |
| ! | ATCTTTCACTGATAATACAA+AGG | - | chr5_1:5412185-5412204 | None:intergenic | 25.0% |
| ! | TGTATTATCAGTGAAAGATT+AGG | + | chr5_1:5412078-5412097 | Msa0713290:intron | 25.0% |
| ! | GTATTATCAGTGAAAGATTT+GGG | - | chr5_1:5412183-5412202 | None:intergenic | 25.0% |
| ! | TGTATTATCAGTGAAAGATT+TGG | - | chr5_1:5412078-5412097 | None:intergenic | 25.0% |
| ! | ATCTTTCACTGATAATACAA+AGG | + | chr5_1:5412185-5412204 | Msa0713290:intron | 25.0% |
| !! | TTTTCTTTACTCGTTTGAAT+CGG | + | chr5_1:5412293-5412312 | Msa0713290:intron | 25.0% |
| ! | GAAGAAAAAATAGTCCTAAA+AGG | - | chr5_1:5412604-5412623 | None:intergenic | 25.0% |
| !!! | TTAGGACTATTTTTTCTTCA+CGG | + | chr5_1:5412605-5412624 | Msa0713290:intron | 25.0% |
| ! | ATTCTCATATACTCTATATG+AGG | - | chr5_1:5412654-5412673 | None:intergenic | 25.0% |
| !! | TTTTTGAACAATGTTCCTTT+GGG | - | chr5_1:5412810-5412829 | None:intergenic | 25.0% |
| !!! | TTTTTTGAACAATGTTCCTT+TGG | - | chr5_1:5412811-5412830 | None:intergenic | 25.0% |
| ! | TCAAAAAAATGTATTCGCAA+AGG | + | chr5_1:5412823-5412842 | Msa0713290:intron | 25.0% |
| ! | ACAAACATTATTGTTCACTA+TGG | - | chr5_1:5412993-5413012 | None:intergenic | 25.0% |
| ! | TGTATAATAGTACTTTGTAG+TGG | + | chr5_1:5413010-5413029 | Msa0713290:intron | 25.0% |
| !!! | TAAATGAGTTCTTATTTTGC+AGG | + | chr5_1:5413043-5413062 | Msa0713290:intron | 25.0% |
| ! | TACCTTGAATTAATGCAAAT+GGG | - | chr5_1:5413082-5413101 | None:intergenic | 25.0% |
| !! | AAACAAGAATACACAGTTTT+TGG | + | chr5_1:5413233-5413252 | Msa0713290:CDS | 25.0% |
| !! | TTTGTAGGTTTCAATTCTTT+TGG | + | chr5_1:5413417-5413436 | Msa0713290:three_prime_UTR | 25.0% |
| ! | TTGAAAATACGTATAAGCTT+TGG | - | chr5_1:5413445-5413464 | None:intergenic | 25.0% |
| ! | TATATATATCCGTTCTCAAA+TGG | - | chr5_1:5413585-5413604 | None:intergenic | 25.0% |
| ! | TGTTATAACATAGTCAAACT+TGG | + | chr5_1:5409550-5409569 | Msa0713290:five_prime_UTR | 25.0% |
| ! | AATCAAACGGTTTAACAAAA+TGG | - | chr5_1:5409708-5409727 | None:intergenic | 25.0% |
| ! | ACACAAAAAGAAGAATCAAA+CGG | - | chr5_1:5409721-5409740 | None:intergenic | 25.0% |
| ! | TGAAATAATCACAATTGACA+CGG | - | chr5_1:5410162-5410181 | None:intergenic | 25.0% |
| !!! | TTATTGTTTGTTGTGTGAAT+CGG | + | chr5_1:5410507-5410526 | Msa0713290:CDS | 25.0% |
| !! | CAAGATCAACTTTTTGTTAA+AGG | - | chr5_1:5410942-5410961 | None:intergenic | 25.0% |
| ! | GAACTTAATAACTTTCTTTC+AGG | - | chr5_1:5411187-5411206 | None:intergenic | 25.0% |
| ! | CATGTAATTTGGAGATAATT+AGG | - | chr5_1:5411230-5411249 | None:intergenic | 25.0% |
| ! | AACAGAAGAAACATGTAATT+TGG | - | chr5_1:5411241-5411260 | None:intergenic | 25.0% |
| !!! | AATTCATCTGTTTTTTTTCC+AGG | + | chr5_1:5411393-5411412 | Msa0713290:intron | 25.0% |
| !!! | ATTCATCTGTTTTTTTTCCA+GGG | + | chr5_1:5411394-5411413 | Msa0713290:intron | 25.0% |
| !!! | TTTTTTTTCCAGGGTATTAT+TGG | + | chr5_1:5411403-5411422 | Msa0713290:intron | 25.0% |
| !! | AAAGAAACATGGAAAGTATA+AGG | - | chr5_1:5411533-5411552 | None:intergenic | 25.0% |
| ! | TCATCATTACTAAAGAAACA+TGG | - | chr5_1:5411544-5411563 | None:intergenic | 25.0% |
| ! | AAACCATAATTATCATGTGA+CGG | - | chr5_1:5411580-5411599 | None:intergenic | 25.0% |
| ! | ACTATTAATGCAATTATGGT+AGG | + | chr5_1:5411834-5411853 | Msa0713290:intron | 25.0% |
| ! | CTCAACAAAACAATTCATAA+TGG | - | chr5_1:5411946-5411965 | None:intergenic | 25.0% |
| !! | CATATTTTTCTTGCTTTCAT+AGG | + | chr5_1:5411992-5412011 | Msa0713290:intron | 25.0% |
| !! | TTAAATGAATCTAAAATGGC+TGG | - | chr5_1:5412021-5412040 | None:intergenic | 25.0% |
| ! | ATCTTTCACTGATAATACAA+AGG | - | chr5_1:5412185-5412204 | None:intergenic | 25.0% |
| ! | TGTATTATCAGTGAAAGATT+AGG | + | chr5_1:5412078-5412097 | Msa0713290:intron | 25.0% |
| ! | GTATTATCAGTGAAAGATTT+GGG | - | chr5_1:5412183-5412202 | None:intergenic | 25.0% |
| ! | TGTATTATCAGTGAAAGATT+TGG | - | chr5_1:5412078-5412097 | None:intergenic | 25.0% |
| ! | ATCTTTCACTGATAATACAA+AGG | + | chr5_1:5412185-5412204 | Msa0713290:intron | 25.0% |
| !! | TTTTCTTTACTCGTTTGAAT+CGG | + | chr5_1:5412293-5412312 | Msa0713290:intron | 25.0% |
| ! | GAAGAAAAAATAGTCCTAAA+AGG | - | chr5_1:5412604-5412623 | None:intergenic | 25.0% |
| !!! | TTAGGACTATTTTTTCTTCA+CGG | + | chr5_1:5412605-5412624 | Msa0713290:intron | 25.0% |
| ! | ATTCTCATATACTCTATATG+AGG | - | chr5_1:5412654-5412673 | None:intergenic | 25.0% |
| !! | TTTTTGAACAATGTTCCTTT+GGG | - | chr5_1:5412810-5412829 | None:intergenic | 25.0% |
| !!! | TTTTTTGAACAATGTTCCTT+TGG | - | chr5_1:5412811-5412830 | None:intergenic | 25.0% |
| ! | TCAAAAAAATGTATTCGCAA+AGG | + | chr5_1:5412823-5412842 | Msa0713290:intron | 25.0% |
| ! | ACAAACATTATTGTTCACTA+TGG | - | chr5_1:5412993-5413012 | None:intergenic | 25.0% |
| ! | TGTATAATAGTACTTTGTAG+TGG | + | chr5_1:5413010-5413029 | Msa0713290:intron | 25.0% |
| !!! | TAAATGAGTTCTTATTTTGC+AGG | + | chr5_1:5413043-5413062 | Msa0713290:intron | 25.0% |
| ! | TACCTTGAATTAATGCAAAT+GGG | - | chr5_1:5413082-5413101 | None:intergenic | 25.0% |
| !! | AAACAAGAATACACAGTTTT+TGG | + | chr5_1:5413233-5413252 | Msa0713290:CDS | 25.0% |
| !! | TTTGTAGGTTTCAATTCTTT+TGG | + | chr5_1:5413417-5413436 | Msa0713290:three_prime_UTR | 25.0% |
| ! | TTGAAAATACGTATAAGCTT+TGG | - | chr5_1:5413445-5413464 | None:intergenic | 25.0% |
| ! | TATATATATCCGTTCTCAAA+TGG | - | chr5_1:5413585-5413604 | None:intergenic | 25.0% |
| AGATGAGATTGAATAAAGGA+CGG | - | chr5_1:5409628-5409647 | None:intergenic | 30.0% | |
| TCAGAGATGAGATTGAATAA+AGG | - | chr5_1:5409632-5409651 | None:intergenic | 30.0% | |
| ATTTAACGAGATGATGAGAA+TGG | - | chr5_1:5409657-5409676 | None:intergenic | 30.0% | |
| TCTCATCATCTCGTTAAATA+TGG | + | chr5_1:5409658-5409677 | Msa0713290:exon | 30.0% | |
| !!! | TTTGTGTGTTTTGTTTCTTG+CGG | + | chr5_1:5409734-5409753 | Msa0713290:CDS | 30.0% |
| TTTCGGAGTTTAGGAATATT+GGG | + | chr5_1:5409801-5409820 | Msa0713290:CDS | 30.0% | |
| TCTTGTAAATCTATGTGTAC+TGG | + | chr5_1:5409956-5409975 | Msa0713290:CDS | 30.0% | |
| CTTGTAAATCTATGTGTACT+GGG | + | chr5_1:5409957-5409976 | Msa0713290:CDS | 30.0% | |
| AAAACTACACCAATTCCAAA+AGG | - | chr5_1:5410217-5410236 | None:intergenic | 30.0% | |
| ! | TGCATGTTGTAGTACATTTT+AGG | + | chr5_1:5410428-5410447 | Msa0713290:intron | 30.0% |
| !! | TATTGTTTGTTGTGTGAATC+GGG | + | chr5_1:5410508-5410527 | Msa0713290:CDS | 30.0% |
| ! | TGTTTTCTTGCACATTCTTT+TGG | + | chr5_1:5410838-5410857 | Msa0713290:intron | 30.0% |
| !! | GTGTTGGTTAAAGAAACAAA+AGG | + | chr5_1:5410983-5411002 | Msa0713290:intron | 30.0% |
| TTTATGATGTATTGCACAGT+TGG | + | chr5_1:5411322-5411341 | Msa0713290:intron | 30.0% | |
| TTTCATATTTGAACCTTCAC+TGG | + | chr5_1:5411602-5411621 | Msa0713290:intron | 30.0% | |
| AGGAAATAATTATCCAGTGA+AGG | - | chr5_1:5411618-5411637 | None:intergenic | 30.0% | |
| ATCAAAACATGCAAAGTATG+AGG | - | chr5_1:5411638-5411657 | None:intergenic | 30.0% | |
| TACTGCAATAACCTAACTAA+TGG | - | chr5_1:5411891-5411910 | None:intergenic | 30.0% | |
| TGAAAGATTAGGTAATGACA+AGG | + | chr5_1:5412089-5412108 | Msa0713290:intron | 30.0% | |
| GAAAGATTAGGTAATGACAA+GGG | + | chr5_1:5412090-5412109 | Msa0713290:intron | 30.0% | |
| AAAGATTAGGTAATGACAAG+GGG | + | chr5_1:5412091-5412110 | Msa0713290:intron | 30.0% | |
| TACGGGGTAATATTGTAATA+TGG | + | chr5_1:5412122-5412141 | Msa0713290:intron | 30.0% | |
| !!! | CGATTTTTGGTAATGAAGTT+TGG | - | chr5_1:5412251-5412270 | None:intergenic | 30.0% |
| ! | AACAATGAACACACGATTTT+TGG | - | chr5_1:5412264-5412283 | None:intergenic | 30.0% |
| TTTCTTTACTCGTTTGAATC+GGG | + | chr5_1:5412294-5412313 | Msa0713290:intron | 30.0% | |
| TAAATCAGTTCACCTTGATT+TGG | - | chr5_1:5412412-5412431 | None:intergenic | 30.0% | |
| ! | CTCTGGATTTTCATTAATCA+AGG | + | chr5_1:5412455-5412474 | Msa0713290:intron | 30.0% |
| TCATAAAATGTCTATTGCTG+AGG | - | chr5_1:5412522-5412541 | None:intergenic | 30.0% | |
| ! | ACATTTTATGATCGAGAACA+TGG | + | chr5_1:5412531-5412550 | Msa0713290:intron | 30.0% |
| ! | TTAGAAAACACGGGTATTTT+TGG | - | chr5_1:5412560-5412579 | None:intergenic | 30.0% |
| !!! | CATTTTAGCTTAGAAAACAC+GGG | - | chr5_1:5412569-5412588 | None:intergenic | 30.0% |
| !!! | CCATTTTAGCTTAGAAAACA+CGG | - | chr5_1:5412570-5412589 | None:intergenic | 30.0% |
| TTGAATACAATGAATGTACC+TGG | - | chr5_1:5412704-5412723 | None:intergenic | 30.0% | |
| ACCTTGAATTAATGCAAATG+GGG | - | chr5_1:5413081-5413100 | None:intergenic | 30.0% | |
| GTACCTTGAATTAATGCAAA+TGG | - | chr5_1:5413083-5413102 | None:intergenic | 30.0% | |
| GCTAAGCTAATAAAGAATTC+TGG | - | chr5_1:5413197-5413216 | None:intergenic | 30.0% | |
| TTAACATTGTTCCAAACATC+AGG | - | chr5_1:5413317-5413336 | None:intergenic | 30.0% | |
| AGATGAGATTGAATAAAGGA+CGG | - | chr5_1:5409628-5409647 | None:intergenic | 30.0% | |
| TCAGAGATGAGATTGAATAA+AGG | - | chr5_1:5409632-5409651 | None:intergenic | 30.0% | |
| ATTTAACGAGATGATGAGAA+TGG | - | chr5_1:5409657-5409676 | None:intergenic | 30.0% | |
| TCTCATCATCTCGTTAAATA+TGG | + | chr5_1:5409658-5409677 | Msa0713290:exon | 30.0% | |
| !!! | TTTGTGTGTTTTGTTTCTTG+CGG | + | chr5_1:5409734-5409753 | Msa0713290:CDS | 30.0% |
| TTTCGGAGTTTAGGAATATT+GGG | + | chr5_1:5409801-5409820 | Msa0713290:CDS | 30.0% | |
| TCTTGTAAATCTATGTGTAC+TGG | + | chr5_1:5409956-5409975 | Msa0713290:CDS | 30.0% | |
| CTTGTAAATCTATGTGTACT+GGG | + | chr5_1:5409957-5409976 | Msa0713290:CDS | 30.0% | |
| AAAACTACACCAATTCCAAA+AGG | - | chr5_1:5410217-5410236 | None:intergenic | 30.0% | |
| ! | TGCATGTTGTAGTACATTTT+AGG | + | chr5_1:5410428-5410447 | Msa0713290:intron | 30.0% |
| !! | TATTGTTTGTTGTGTGAATC+GGG | + | chr5_1:5410508-5410527 | Msa0713290:CDS | 30.0% |
| ! | TGTTTTCTTGCACATTCTTT+TGG | + | chr5_1:5410838-5410857 | Msa0713290:intron | 30.0% |
| !! | GTGTTGGTTAAAGAAACAAA+AGG | + | chr5_1:5410983-5411002 | Msa0713290:intron | 30.0% |
| TTTATGATGTATTGCACAGT+TGG | + | chr5_1:5411322-5411341 | Msa0713290:intron | 30.0% | |
| TTTCATATTTGAACCTTCAC+TGG | + | chr5_1:5411602-5411621 | Msa0713290:intron | 30.0% | |
| AGGAAATAATTATCCAGTGA+AGG | - | chr5_1:5411618-5411637 | None:intergenic | 30.0% | |
| ATCAAAACATGCAAAGTATG+AGG | - | chr5_1:5411638-5411657 | None:intergenic | 30.0% | |
| TACTGCAATAACCTAACTAA+TGG | - | chr5_1:5411891-5411910 | None:intergenic | 30.0% | |
| TGAAAGATTAGGTAATGACA+AGG | + | chr5_1:5412089-5412108 | Msa0713290:intron | 30.0% | |
| GAAAGATTAGGTAATGACAA+GGG | + | chr5_1:5412090-5412109 | Msa0713290:intron | 30.0% | |
| AAAGATTAGGTAATGACAAG+GGG | + | chr5_1:5412091-5412110 | Msa0713290:intron | 30.0% | |
| TACGGGGTAATATTGTAATA+TGG | + | chr5_1:5412122-5412141 | Msa0713290:intron | 30.0% | |
| !!! | CGATTTTTGGTAATGAAGTT+TGG | - | chr5_1:5412251-5412270 | None:intergenic | 30.0% |
| ! | AACAATGAACACACGATTTT+TGG | - | chr5_1:5412264-5412283 | None:intergenic | 30.0% |
| TTTCTTTACTCGTTTGAATC+GGG | + | chr5_1:5412294-5412313 | Msa0713290:intron | 30.0% | |
| TAAATCAGTTCACCTTGATT+TGG | - | chr5_1:5412412-5412431 | None:intergenic | 30.0% | |
| ! | CTCTGGATTTTCATTAATCA+AGG | + | chr5_1:5412455-5412474 | Msa0713290:intron | 30.0% |
| TCATAAAATGTCTATTGCTG+AGG | - | chr5_1:5412522-5412541 | None:intergenic | 30.0% | |
| ! | ACATTTTATGATCGAGAACA+TGG | + | chr5_1:5412531-5412550 | Msa0713290:intron | 30.0% |
| ! | TTAGAAAACACGGGTATTTT+TGG | - | chr5_1:5412560-5412579 | None:intergenic | 30.0% |
| !!! | CATTTTAGCTTAGAAAACAC+GGG | - | chr5_1:5412569-5412588 | None:intergenic | 30.0% |
| !!! | CCATTTTAGCTTAGAAAACA+CGG | - | chr5_1:5412570-5412589 | None:intergenic | 30.0% |
| TTGAATACAATGAATGTACC+TGG | - | chr5_1:5412704-5412723 | None:intergenic | 30.0% | |
| ACCTTGAATTAATGCAAATG+GGG | - | chr5_1:5413081-5413100 | None:intergenic | 30.0% | |
| GTACCTTGAATTAATGCAAA+TGG | - | chr5_1:5413083-5413102 | None:intergenic | 30.0% | |
| GCTAAGCTAATAAAGAATTC+TGG | - | chr5_1:5413197-5413216 | None:intergenic | 30.0% | |
| TTAACATTGTTCCAAACATC+AGG | - | chr5_1:5413317-5413336 | None:intergenic | 30.0% | |
| ! | AACAAGAAGTGGTTCTGTTT+CGG | + | chr5_1:5409784-5409803 | Msa0713290:CDS | 35.0% |
| GTTTCGGAGTTTAGGAATAT+TGG | + | chr5_1:5409800-5409819 | Msa0713290:CDS | 35.0% | |
| TTGGTGAGAAGAATGTTGAA+GGG | + | chr5_1:5409840-5409859 | Msa0713290:CDS | 35.0% | |
| TTGTAGAGGGATTGAACATT+TGG | + | chr5_1:5409865-5409884 | Msa0713290:CDS | 35.0% | |
| ! | GATTGAACATTTGGAGCTTT+GGG | + | chr5_1:5409874-5409893 | Msa0713290:CDS | 35.0% |
| ! | ATTGAACATTTGGAGCTTTG+GGG | + | chr5_1:5409875-5409894 | Msa0713290:CDS | 35.0% |
| ACCTTGTCTTTGTGATACTT+GGG | + | chr5_1:5409988-5410007 | Msa0713290:CDS | 35.0% | |
| TTTAAATTCCCCCTTCCATT+TGG | + | chr5_1:5410185-5410204 | Msa0713290:intron | 35.0% | |
| TTAAATTCCCCCTTCCATTT+GGG | + | chr5_1:5410186-5410205 | Msa0713290:intron | 35.0% | |
| ATGTGATCTTGATCTAGTCT+AGG | - | chr5_1:5410286-5410305 | None:intergenic | 35.0% | |
| !! | TTTTAGGAACTTGCCTGTTT+AGG | + | chr5_1:5410444-5410463 | Msa0713290:CDS | 35.0% |
| ! | TGATTTTGTGTTTGTGAACC+AGG | - | chr5_1:5410652-5410671 | None:intergenic | 35.0% |
| ! | GTTCGGTTTTGCTTATACTT+AGG | + | chr5_1:5410701-5410720 | Msa0713290:intron | 35.0% |
| TGGGAATGATTTCACTGTAT+TGG | + | chr5_1:5410806-5410825 | Msa0713290:intron | 35.0% | |
| TATAGAGTTCATCTGAGTTC+AGG | + | chr5_1:5410876-5410895 | Msa0713290:intron | 35.0% | |
| ! | TCAAACTTTTGTTGCAGTGT+TGG | + | chr5_1:5410967-5410986 | Msa0713290:intron | 35.0% |
| CAACTAATTATCTCCCCATT+AGG | - | chr5_1:5411041-5411060 | None:intergenic | 35.0% | |
| CTAATGGGGAGATAATTAGT+TGG | + | chr5_1:5411039-5411058 | Msa0713290:CDS | 35.0% | |
| GAGATAATTAGTTGGACTTC+TGG | + | chr5_1:5411047-5411066 | Msa0713290:CDS | 35.0% | |
| ! | TTTCCAGGGTATTATTGGAT+TGG | + | chr5_1:5411408-5411427 | Msa0713290:intron | 35.0% |
| TTTCCAATCCAATAATACCC+TGG | - | chr5_1:5411414-5411433 | None:intergenic | 35.0% | |
| ! | ATTGGATTGGAAACTGAACA+CGG | + | chr5_1:5411421-5411440 | Msa0713290:CDS | 35.0% |
| GATCCGTCACATGATAATTA+TGG | + | chr5_1:5411574-5411593 | Msa0713290:intron | 35.0% | |
| !! | AGGCAACAGTTCTAGAATAT+AGG | - | chr5_1:5411696-5411715 | None:intergenic | 35.0% |
| AGAAAGACTGAGCTTAAAAC+AGG | - | chr5_1:5411915-5411934 | None:intergenic | 35.0% | |
| AAGATTAGGTAATGACAAGG+GGG | + | chr5_1:5412092-5412111 | Msa0713290:intron | 35.0% | |
| AGTCAGAGATGTTGTGAAAT+TGG | + | chr5_1:5412225-5412244 | Msa0713290:intron | 35.0% | |
| GCAAATAGAATCAAAGTCTC+TGG | + | chr5_1:5412438-5412457 | Msa0713290:intron | 35.0% | |
| ! | CCGTGTTTTCTAAGCTAAAA+TGG | + | chr5_1:5412567-5412586 | Msa0713290:intron | 35.0% |
| ! | TGGATTTCAATGTCCCTTTT+AGG | + | chr5_1:5412587-5412606 | Msa0713290:intron | 35.0% |
| CTCTATATGAGGACAAAGAA+AGG | - | chr5_1:5412643-5412662 | None:intergenic | 35.0% | |
| GCTCATATTCACTGTTAAGT+GGG | - | chr5_1:5412971-5412990 | None:intergenic | 35.0% | |
| CCTTGAATTAATGCAAATGG+GGG | - | chr5_1:5413080-5413099 | None:intergenic | 35.0% | |
| ACCATTCAATAAACTTCCTG+TGG | + | chr5_1:5413121-5413140 | Msa0713290:CDS | 35.0% | |
| TCCACAGGAAGTTTATTGAA+TGG | - | chr5_1:5413125-5413144 | None:intergenic | 35.0% | |
| GATTGTCCAATCTTAAGAAG+AGG | + | chr5_1:5413146-5413165 | Msa0713290:CDS | 35.0% | |
| ACTGAACCTCTTCTTAAGAT+TGG | - | chr5_1:5413155-5413174 | None:intergenic | 35.0% | |
| ! | AGAGGTTCAGTTGCTTTAAT+CGG | + | chr5_1:5413164-5413183 | Msa0713290:CDS | 35.0% |
| CTAATAAAGAATTCTGGACC+GGG | - | chr5_1:5413191-5413210 | None:intergenic | 35.0% | |
| GCTAATAAAGAATTCTGGAC+CGG | - | chr5_1:5413192-5413211 | None:intergenic | 35.0% | |
| ATTGTTCCAAACATCAGGTA+AGG | - | chr5_1:5413312-5413331 | None:intergenic | 35.0% | |
| TTGATTCTTCTGAGCAAGAA+AGG | - | chr5_1:5413365-5413384 | None:intergenic | 35.0% | |
| AAAGAGCTTCCATTTGAGAA+CGG | + | chr5_1:5413573-5413592 | Msa0713290:three_prime_UTR | 35.0% | |
| ! | AACAAGAAGTGGTTCTGTTT+CGG | + | chr5_1:5409784-5409803 | Msa0713290:CDS | 35.0% |
| GTTTCGGAGTTTAGGAATAT+TGG | + | chr5_1:5409800-5409819 | Msa0713290:CDS | 35.0% | |
| TTGGTGAGAAGAATGTTGAA+GGG | + | chr5_1:5409840-5409859 | Msa0713290:CDS | 35.0% | |
| TTGTAGAGGGATTGAACATT+TGG | + | chr5_1:5409865-5409884 | Msa0713290:CDS | 35.0% | |
| ! | GATTGAACATTTGGAGCTTT+GGG | + | chr5_1:5409874-5409893 | Msa0713290:CDS | 35.0% |
| ! | ATTGAACATTTGGAGCTTTG+GGG | + | chr5_1:5409875-5409894 | Msa0713290:CDS | 35.0% |
| ACCTTGTCTTTGTGATACTT+GGG | + | chr5_1:5409988-5410007 | Msa0713290:CDS | 35.0% | |
| TTTAAATTCCCCCTTCCATT+TGG | + | chr5_1:5410185-5410204 | Msa0713290:intron | 35.0% | |
| TTAAATTCCCCCTTCCATTT+GGG | + | chr5_1:5410186-5410205 | Msa0713290:intron | 35.0% | |
| ATGTGATCTTGATCTAGTCT+AGG | - | chr5_1:5410286-5410305 | None:intergenic | 35.0% | |
| !! | TTTTAGGAACTTGCCTGTTT+AGG | + | chr5_1:5410444-5410463 | Msa0713290:CDS | 35.0% |
| ! | TGATTTTGTGTTTGTGAACC+AGG | - | chr5_1:5410652-5410671 | None:intergenic | 35.0% |
| ! | GTTCGGTTTTGCTTATACTT+AGG | + | chr5_1:5410701-5410720 | Msa0713290:intron | 35.0% |
| TGGGAATGATTTCACTGTAT+TGG | + | chr5_1:5410806-5410825 | Msa0713290:intron | 35.0% | |
| TATAGAGTTCATCTGAGTTC+AGG | + | chr5_1:5410876-5410895 | Msa0713290:intron | 35.0% | |
| ! | TCAAACTTTTGTTGCAGTGT+TGG | + | chr5_1:5410967-5410986 | Msa0713290:intron | 35.0% |
| CAACTAATTATCTCCCCATT+AGG | - | chr5_1:5411041-5411060 | None:intergenic | 35.0% | |
| CTAATGGGGAGATAATTAGT+TGG | + | chr5_1:5411039-5411058 | Msa0713290:CDS | 35.0% | |
| GAGATAATTAGTTGGACTTC+TGG | + | chr5_1:5411047-5411066 | Msa0713290:CDS | 35.0% | |
| ! | TTTCCAGGGTATTATTGGAT+TGG | + | chr5_1:5411408-5411427 | Msa0713290:intron | 35.0% |
| TTTCCAATCCAATAATACCC+TGG | - | chr5_1:5411414-5411433 | None:intergenic | 35.0% | |
| ! | ATTGGATTGGAAACTGAACA+CGG | + | chr5_1:5411421-5411440 | Msa0713290:CDS | 35.0% |
| GATCCGTCACATGATAATTA+TGG | + | chr5_1:5411574-5411593 | Msa0713290:intron | 35.0% | |
| !! | AGGCAACAGTTCTAGAATAT+AGG | - | chr5_1:5411696-5411715 | None:intergenic | 35.0% |
| AGAAAGACTGAGCTTAAAAC+AGG | - | chr5_1:5411915-5411934 | None:intergenic | 35.0% | |
| AAGATTAGGTAATGACAAGG+GGG | + | chr5_1:5412092-5412111 | Msa0713290:intron | 35.0% | |
| AGTCAGAGATGTTGTGAAAT+TGG | + | chr5_1:5412225-5412244 | Msa0713290:intron | 35.0% | |
| GCAAATAGAATCAAAGTCTC+TGG | + | chr5_1:5412438-5412457 | Msa0713290:intron | 35.0% | |
| ! | CCGTGTTTTCTAAGCTAAAA+TGG | + | chr5_1:5412567-5412586 | Msa0713290:intron | 35.0% |
| ! | TGGATTTCAATGTCCCTTTT+AGG | + | chr5_1:5412587-5412606 | Msa0713290:intron | 35.0% |
| CTCTATATGAGGACAAAGAA+AGG | - | chr5_1:5412643-5412662 | None:intergenic | 35.0% | |
| GCTCATATTCACTGTTAAGT+GGG | - | chr5_1:5412971-5412990 | None:intergenic | 35.0% | |
| CCTTGAATTAATGCAAATGG+GGG | - | chr5_1:5413080-5413099 | None:intergenic | 35.0% | |
| ACCATTCAATAAACTTCCTG+TGG | + | chr5_1:5413121-5413140 | Msa0713290:CDS | 35.0% | |
| TCCACAGGAAGTTTATTGAA+TGG | - | chr5_1:5413125-5413144 | None:intergenic | 35.0% | |
| GATTGTCCAATCTTAAGAAG+AGG | + | chr5_1:5413146-5413165 | Msa0713290:CDS | 35.0% | |
| ACTGAACCTCTTCTTAAGAT+TGG | - | chr5_1:5413155-5413174 | None:intergenic | 35.0% | |
| ! | AGAGGTTCAGTTGCTTTAAT+CGG | + | chr5_1:5413164-5413183 | Msa0713290:CDS | 35.0% |
| CTAATAAAGAATTCTGGACC+GGG | - | chr5_1:5413191-5413210 | None:intergenic | 35.0% | |
| GCTAATAAAGAATTCTGGAC+CGG | - | chr5_1:5413192-5413211 | None:intergenic | 35.0% | |
| ATTGTTCCAAACATCAGGTA+AGG | - | chr5_1:5413312-5413331 | None:intergenic | 35.0% | |
| TTGATTCTTCTGAGCAAGAA+AGG | - | chr5_1:5413365-5413384 | None:intergenic | 35.0% | |
| AAAGAGCTTCCATTTGAGAA+CGG | + | chr5_1:5413573-5413592 | Msa0713290:three_prime_UTR | 35.0% | |
| CGGTTTAACAAAATGGTGCT+TGG | - | chr5_1:5409701-5409720 | None:intergenic | 40.0% | |
| !!! | GTGTTTTGTTTCTTGCGGTT+TGG | + | chr5_1:5409739-5409758 | Msa0713290:CDS | 40.0% |
| TAGGAATATTGGGTCAACGT+TGG | + | chr5_1:5409811-5409830 | Msa0713290:CDS | 40.0% | |
| TATTGGGTCAACGTTGGATT+TGG | + | chr5_1:5409817-5409836 | Msa0713290:CDS | 40.0% | |
| ! | GTTGGTGAGAAGAATGTTGA+AGG | + | chr5_1:5409839-5409858 | Msa0713290:CDS | 40.0% |
| !! | AATGTTGAAGGGTGTTGTAG+AGG | + | chr5_1:5409851-5409870 | Msa0713290:CDS | 40.0% |
| !! | ATGTTGAAGGGTGTTGTAGA+GGG | + | chr5_1:5409852-5409871 | Msa0713290:CDS | 40.0% |
| ! | GGATTGAACATTTGGAGCTT+TGG | + | chr5_1:5409873-5409892 | Msa0713290:CDS | 40.0% |
| TCTATGTGTACTGGGAAAGA+TGG | + | chr5_1:5409965-5409984 | Msa0713290:CDS | 40.0% | |
| GACCTTGTCTTTGTGATACT+TGG | + | chr5_1:5409987-5410006 | Msa0713290:CDS | 40.0% | |
| ACCCAAGTATCACAAAGACA+AGG | - | chr5_1:5409992-5410011 | None:intergenic | 40.0% | |
| ! | TGTGATACTTGGGTGTTTTG+TGG | + | chr5_1:5409998-5410017 | Msa0713290:CDS | 40.0% |
| ! | GTGATACTTGGGTGTTTTGT+GGG | + | chr5_1:5409999-5410018 | Msa0713290:CDS | 40.0% |
| TACATGTGTTTGTGTCTGTG+TGG | - | chr5_1:5410077-5410096 | None:intergenic | 40.0% | |
| AAGGATAGACCCAAATGGAA+GGG | - | chr5_1:5410198-5410217 | None:intergenic | 40.0% | |
| AAAGGATAGACCCAAATGGA+AGG | - | chr5_1:5410199-5410218 | None:intergenic | 40.0% | |
| ! | TCCATTTGGGTCTATCCTTT+TGG | + | chr5_1:5410199-5410218 | Msa0713290:intron | 40.0% |
| TCCAAAAGGATAGACCCAAA+TGG | - | chr5_1:5410203-5410222 | None:intergenic | 40.0% | |
| !!! | TGGGTCTATCCTTTTGGAAT+TGG | + | chr5_1:5410205-5410224 | Msa0713290:intron | 40.0% |
| TTGCTAATCCAAGCCTAAAC+AGG | - | chr5_1:5410460-5410479 | None:intergenic | 40.0% | |
| TCCAACCTGAGATACTACTT+CGG | - | chr5_1:5410765-5410784 | None:intergenic | 40.0% | |
| ! | TCTGGTCTCATCTTTGGAAA+AGG | + | chr5_1:5411065-5411084 | Msa0713290:CDS | 40.0% |
| ! | TCTCATCTTTGGAAAAGGAG+AGG | + | chr5_1:5411070-5411089 | Msa0713290:CDS | 40.0% |
| AAGGAGAGGTAACTGAAGTT+TGG | + | chr5_1:5411084-5411103 | Msa0713290:intron | 40.0% | |
| CACTCTCATTGCCATTAGTT+AGG | + | chr5_1:5411877-5411896 | Msa0713290:intron | 40.0% | |
| GAAACCATCACACCAAATCA+AGG | + | chr5_1:5412397-5412416 | Msa0713290:intron | 40.0% | |
| !! | TTCACCTTGATTTGGTGTGA+TGG | - | chr5_1:5412404-5412423 | None:intergenic | 40.0% |
| ! | GGGTTACAAAAGTGCAAACA+TGG | - | chr5_1:5412486-5412505 | None:intergenic | 40.0% |
| ! | TGTTTGCACTTTTGTAACCC+AGG | + | chr5_1:5412486-5412505 | Msa0713290:intron | 40.0% |
| CATGTTAACGATACAAAGCC+AGG | + | chr5_1:5412683-5412702 | Msa0713290:intron | 40.0% | |
| ! | TTCTGTTGATGCCATTTGCA+TGG | + | chr5_1:5412777-5412796 | Msa0713290:intron | 40.0% |
| TGGGAATACTACCATGCAAA+TGG | - | chr5_1:5412791-5412810 | None:intergenic | 40.0% | |
| TTGCATGGTAGTATTCCCAA+AGG | + | chr5_1:5412792-5412811 | Msa0713290:intron | 40.0% | |
| GGCTCATATTCACTGTTAAG+TGG | - | chr5_1:5412972-5412991 | None:intergenic | 40.0% | |
| !!! | TGAGTTCTTATTTTGCAGGC+TGG | + | chr5_1:5413047-5413066 | Msa0713290:intron | 40.0% |
| !!! | CTTATTTTGCAGGCTGGTTT+TGG | + | chr5_1:5413053-5413072 | Msa0713290:intron | 40.0% |
| CCCCCATTTGCATTAATTCA+AGG | + | chr5_1:5413077-5413096 | Msa0713290:CDS | 40.0% | |
| ! | CAAGGTACATTAGAAGCACA+AGG | + | chr5_1:5413095-5413114 | Msa0713290:CDS | 40.0% |
| AAGATTGGACAATCTTCCAC+AGG | - | chr5_1:5413140-5413159 | None:intergenic | 40.0% | |
| GCTTAGCTGATCATTCAGAA+TGG | + | chr5_1:5413210-5413229 | Msa0713290:CDS | 40.0% | |
| TCTGCAACATTCATGTCTTC+AGG | - | chr5_1:5413269-5413288 | None:intergenic | 40.0% | |
| TTCCAAACATCAGGTAAGGT+GGG | - | chr5_1:5413308-5413327 | None:intergenic | 40.0% | |
| ! | AGGAACGGGTTTCTTCAAAA+CGG | - | chr5_1:5413345-5413364 | None:intergenic | 40.0% |
| TCTTCTGAGCAAGAAAGGAA+CGG | - | chr5_1:5413360-5413379 | None:intergenic | 40.0% | |
| CGGTTTAACAAAATGGTGCT+TGG | - | chr5_1:5409701-5409720 | None:intergenic | 40.0% | |
| !!! | GTGTTTTGTTTCTTGCGGTT+TGG | + | chr5_1:5409739-5409758 | Msa0713290:CDS | 40.0% |
| TAGGAATATTGGGTCAACGT+TGG | + | chr5_1:5409811-5409830 | Msa0713290:CDS | 40.0% | |
| TATTGGGTCAACGTTGGATT+TGG | + | chr5_1:5409817-5409836 | Msa0713290:CDS | 40.0% | |
| ! | GTTGGTGAGAAGAATGTTGA+AGG | + | chr5_1:5409839-5409858 | Msa0713290:CDS | 40.0% |
| !! | AATGTTGAAGGGTGTTGTAG+AGG | + | chr5_1:5409851-5409870 | Msa0713290:CDS | 40.0% |
| !! | ATGTTGAAGGGTGTTGTAGA+GGG | + | chr5_1:5409852-5409871 | Msa0713290:CDS | 40.0% |
| ! | GGATTGAACATTTGGAGCTT+TGG | + | chr5_1:5409873-5409892 | Msa0713290:CDS | 40.0% |
| TCTATGTGTACTGGGAAAGA+TGG | + | chr5_1:5409965-5409984 | Msa0713290:CDS | 40.0% | |
| GACCTTGTCTTTGTGATACT+TGG | + | chr5_1:5409987-5410006 | Msa0713290:CDS | 40.0% | |
| ACCCAAGTATCACAAAGACA+AGG | - | chr5_1:5409992-5410011 | None:intergenic | 40.0% | |
| ! | TGTGATACTTGGGTGTTTTG+TGG | + | chr5_1:5409998-5410017 | Msa0713290:CDS | 40.0% |
| ! | GTGATACTTGGGTGTTTTGT+GGG | + | chr5_1:5409999-5410018 | Msa0713290:CDS | 40.0% |
| TACATGTGTTTGTGTCTGTG+TGG | - | chr5_1:5410077-5410096 | None:intergenic | 40.0% | |
| AAGGATAGACCCAAATGGAA+GGG | - | chr5_1:5410198-5410217 | None:intergenic | 40.0% | |
| AAAGGATAGACCCAAATGGA+AGG | - | chr5_1:5410199-5410218 | None:intergenic | 40.0% | |
| ! | TCCATTTGGGTCTATCCTTT+TGG | + | chr5_1:5410199-5410218 | Msa0713290:intron | 40.0% |
| TCCAAAAGGATAGACCCAAA+TGG | - | chr5_1:5410203-5410222 | None:intergenic | 40.0% | |
| !!! | TGGGTCTATCCTTTTGGAAT+TGG | + | chr5_1:5410205-5410224 | Msa0713290:intron | 40.0% |
| TTGCTAATCCAAGCCTAAAC+AGG | - | chr5_1:5410460-5410479 | None:intergenic | 40.0% | |
| TCCAACCTGAGATACTACTT+CGG | - | chr5_1:5410765-5410784 | None:intergenic | 40.0% | |
| ! | TCTGGTCTCATCTTTGGAAA+AGG | + | chr5_1:5411065-5411084 | Msa0713290:CDS | 40.0% |
| ! | TCTCATCTTTGGAAAAGGAG+AGG | + | chr5_1:5411070-5411089 | Msa0713290:CDS | 40.0% |
| AAGGAGAGGTAACTGAAGTT+TGG | + | chr5_1:5411084-5411103 | Msa0713290:intron | 40.0% | |
| CACTCTCATTGCCATTAGTT+AGG | + | chr5_1:5411877-5411896 | Msa0713290:intron | 40.0% | |
| GAAACCATCACACCAAATCA+AGG | + | chr5_1:5412397-5412416 | Msa0713290:intron | 40.0% | |
| !! | TTCACCTTGATTTGGTGTGA+TGG | - | chr5_1:5412404-5412423 | None:intergenic | 40.0% |
| ! | GGGTTACAAAAGTGCAAACA+TGG | - | chr5_1:5412486-5412505 | None:intergenic | 40.0% |
| ! | TGTTTGCACTTTTGTAACCC+AGG | + | chr5_1:5412486-5412505 | Msa0713290:intron | 40.0% |
| CATGTTAACGATACAAAGCC+AGG | + | chr5_1:5412683-5412702 | Msa0713290:intron | 40.0% | |
| ! | TTCTGTTGATGCCATTTGCA+TGG | + | chr5_1:5412777-5412796 | Msa0713290:intron | 40.0% |
| TGGGAATACTACCATGCAAA+TGG | - | chr5_1:5412791-5412810 | None:intergenic | 40.0% | |
| TTGCATGGTAGTATTCCCAA+AGG | + | chr5_1:5412792-5412811 | Msa0713290:intron | 40.0% | |
| GGCTCATATTCACTGTTAAG+TGG | - | chr5_1:5412972-5412991 | None:intergenic | 40.0% | |
| !!! | TGAGTTCTTATTTTGCAGGC+TGG | + | chr5_1:5413047-5413066 | Msa0713290:intron | 40.0% |
| !!! | CTTATTTTGCAGGCTGGTTT+TGG | + | chr5_1:5413053-5413072 | Msa0713290:intron | 40.0% |
| CCCCCATTTGCATTAATTCA+AGG | + | chr5_1:5413077-5413096 | Msa0713290:CDS | 40.0% | |
| ! | CAAGGTACATTAGAAGCACA+AGG | + | chr5_1:5413095-5413114 | Msa0713290:CDS | 40.0% |
| AAGATTGGACAATCTTCCAC+AGG | - | chr5_1:5413140-5413159 | None:intergenic | 40.0% | |
| GCTTAGCTGATCATTCAGAA+TGG | + | chr5_1:5413210-5413229 | Msa0713290:CDS | 40.0% | |
| TCTGCAACATTCATGTCTTC+AGG | - | chr5_1:5413269-5413288 | None:intergenic | 40.0% | |
| TTCCAAACATCAGGTAAGGT+GGG | - | chr5_1:5413308-5413327 | None:intergenic | 40.0% | |
| ! | AGGAACGGGTTTCTTCAAAA+CGG | - | chr5_1:5413345-5413364 | None:intergenic | 40.0% |
| TCTTCTGAGCAAGAAAGGAA+CGG | - | chr5_1:5413360-5413379 | None:intergenic | 40.0% | |
| CACTTCTTGTTACTGCAGAG+AGG | - | chr5_1:5409775-5409794 | None:intergenic | 45.0% | |
| CTCTCTGCAGTAACAAGAAG+TGG | + | chr5_1:5409773-5409792 | Msa0713290:CDS | 45.0% | |
| ! | GTGGTTCTGTTTCGGAGTTT+AGG | + | chr5_1:5409792-5409811 | Msa0713290:CDS | 45.0% |
| ! | TTTGGGGTTCAGCTGTGAAA+TGG | + | chr5_1:5409891-5409910 | Msa0713290:CDS | 45.0% |
| TTGGGGTTCAGCTGTGAAAT+GGG | + | chr5_1:5409892-5409911 | Msa0713290:CDS | 45.0% | |
| ! | CTTGGGTGTTTTGTGGGAAT+CGG | + | chr5_1:5410005-5410024 | Msa0713290:CDS | 45.0% |
| ! | TTGGGTGTTTTGTGGGAATC+GGG | + | chr5_1:5410006-5410025 | Msa0713290:CDS | 45.0% |
| GAGGCTTGTGGATCCAAATT+CGG | + | chr5_1:5410028-5410047 | Msa0713290:CDS | 45.0% | |
| GTGTCTGTGTGGACAAAAAC+AGG | - | chr5_1:5410066-5410085 | None:intergenic | 45.0% | |
| ATCACAATTGACACGGACAC+TGG | - | chr5_1:5410155-5410174 | None:intergenic | 45.0% | |
| AGGATAGACCCAAATGGAAG+GGG | - | chr5_1:5410197-5410216 | None:intergenic | 45.0% | |
| TCAGACCGAAGTAGTATCTC+AGG | + | chr5_1:5410757-5410776 | Msa0713290:intron | 45.0% | |
| ACCGAAGTAGTATCTCAGGT+TGG | + | chr5_1:5410761-5410780 | Msa0713290:CDS | 45.0% | |
| TGGACTTCTGGTCTCATCTT+TGG | + | chr5_1:5411059-5411078 | Msa0713290:CDS | 45.0% | |
| AGAATATAGGCAACCGTGTG+TGG | - | chr5_1:5411683-5411702 | None:intergenic | 45.0% | |
| AAAATTGGCAGCCTGCACAA+TGG | - | chr5_1:5411724-5411743 | None:intergenic | 45.0% | |
| GACTCTCTGCACGGTAAAAT+TGG | - | chr5_1:5411739-5411758 | None:intergenic | 45.0% | |
| AGAGAGTCGAGGTCAATCAT+GGG | + | chr5_1:5411751-5411770 | Msa0713290:CDS | 45.0% | |
| GGTCAATCATGGGATTCAGA+AGG | + | chr5_1:5411761-5411780 | Msa0713290:CDS | 45.0% | |
| TGACAAGGGGGAACTGTTTA+CGG | + | chr5_1:5412104-5412123 | Msa0713290:intron | 45.0% | |
| TAAGTGGGAAGAGTCTTCAG+TGG | - | chr5_1:5412956-5412975 | None:intergenic | 45.0% | |
| ! | TCAGTTGCTTTAATCGGTCC+CGG | + | chr5_1:5413170-5413189 | Msa0713290:CDS | 45.0% |
| TCCAAACATCAGGTAAGGTG+GGG | - | chr5_1:5413307-5413326 | None:intergenic | 45.0% | |
| GTTCCAAACATCAGGTAAGG+TGG | - | chr5_1:5413309-5413328 | None:intergenic | 45.0% | |
| CTTCTGAGCAAGAAAGGAAC+GGG | - | chr5_1:5413359-5413378 | None:intergenic | 45.0% | |
| CACTTCTTGTTACTGCAGAG+AGG | - | chr5_1:5409775-5409794 | None:intergenic | 45.0% | |
| CTCTCTGCAGTAACAAGAAG+TGG | + | chr5_1:5409773-5409792 | Msa0713290:CDS | 45.0% | |
| ! | GTGGTTCTGTTTCGGAGTTT+AGG | + | chr5_1:5409792-5409811 | Msa0713290:CDS | 45.0% |
| ! | TTTGGGGTTCAGCTGTGAAA+TGG | + | chr5_1:5409891-5409910 | Msa0713290:CDS | 45.0% |
| TTGGGGTTCAGCTGTGAAAT+GGG | + | chr5_1:5409892-5409911 | Msa0713290:CDS | 45.0% | |
| ! | CTTGGGTGTTTTGTGGGAAT+CGG | + | chr5_1:5410005-5410024 | Msa0713290:CDS | 45.0% |
| ! | TTGGGTGTTTTGTGGGAATC+GGG | + | chr5_1:5410006-5410025 | Msa0713290:CDS | 45.0% |
| GAGGCTTGTGGATCCAAATT+CGG | + | chr5_1:5410028-5410047 | Msa0713290:CDS | 45.0% | |
| GTGTCTGTGTGGACAAAAAC+AGG | - | chr5_1:5410066-5410085 | None:intergenic | 45.0% | |
| ATCACAATTGACACGGACAC+TGG | - | chr5_1:5410155-5410174 | None:intergenic | 45.0% | |
| AGGATAGACCCAAATGGAAG+GGG | - | chr5_1:5410197-5410216 | None:intergenic | 45.0% | |
| TCAGACCGAAGTAGTATCTC+AGG | + | chr5_1:5410757-5410776 | Msa0713290:intron | 45.0% | |
| ACCGAAGTAGTATCTCAGGT+TGG | + | chr5_1:5410761-5410780 | Msa0713290:CDS | 45.0% | |
| TGGACTTCTGGTCTCATCTT+TGG | + | chr5_1:5411059-5411078 | Msa0713290:CDS | 45.0% | |
| AGAATATAGGCAACCGTGTG+TGG | - | chr5_1:5411683-5411702 | None:intergenic | 45.0% | |
| AAAATTGGCAGCCTGCACAA+TGG | - | chr5_1:5411724-5411743 | None:intergenic | 45.0% | |
| GACTCTCTGCACGGTAAAAT+TGG | - | chr5_1:5411739-5411758 | None:intergenic | 45.0% | |
| AGAGAGTCGAGGTCAATCAT+GGG | + | chr5_1:5411751-5411770 | Msa0713290:CDS | 45.0% | |
| GGTCAATCATGGGATTCAGA+AGG | + | chr5_1:5411761-5411780 | Msa0713290:CDS | 45.0% | |
| TGACAAGGGGGAACTGTTTA+CGG | + | chr5_1:5412104-5412123 | Msa0713290:intron | 45.0% | |
| TAAGTGGGAAGAGTCTTCAG+TGG | - | chr5_1:5412956-5412975 | None:intergenic | 45.0% | |
| ! | TCAGTTGCTTTAATCGGTCC+CGG | + | chr5_1:5413170-5413189 | Msa0713290:CDS | 45.0% |
| TCCAAACATCAGGTAAGGTG+GGG | - | chr5_1:5413307-5413326 | None:intergenic | 45.0% | |
| GTTCCAAACATCAGGTAAGG+TGG | - | chr5_1:5413309-5413328 | None:intergenic | 45.0% | |
| CTTCTGAGCAAGAAAGGAAC+GGG | - | chr5_1:5413359-5413378 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTTTGTATTTATT+TGG | - | chr5_1:5412375-5412394 | None:intergenic | 5.0% |
| !! | AATAAATACAAAAAAAATAA+TGG | + | chr5_1:5412375-5412394 | Msa0713290:intron | 5.0% |
| !!! | TTATTTTTTTTGTATTTATT+TGG | - | chr5_1:5412375-5412394 | None:intergenic | 5.0% |
| !! | AATAAATACAAAAAAAATAA+TGG | + | chr5_1:5412375-5412394 | Msa0713290:intron | 5.0% |
| ! | GGGTCAACGTTGGATTTGGT+TGG | + | chr5_1:5409821-5409840 | Msa0713290:CDS | 50.0% |
| TGGGGTTCAGCTGTGAAATG+GGG | + | chr5_1:5409893-5409912 | Msa0713290:CDS | 50.0% | |
| TTGTGGATCCAAATTCGGCG+AGG | + | chr5_1:5410033-5410052 | Msa0713290:CDS | 50.0% | |
| GTAACGTACCTCGCCGAATT+TGG | - | chr5_1:5410044-5410063 | None:intergenic | 50.0% | |
| GGATAGACCCAAATGGAAGG+GGG | - | chr5_1:5410196-5410215 | None:intergenic | 50.0% | |
| GGAACTTGCCTGTTTAGGCT+TGG | + | chr5_1:5410449-5410468 | Msa0713290:CDS | 50.0% | |
| !! | CTGGCTCGAGAGATTAGTCT+CGG | - | chr5_1:5410543-5410562 | None:intergenic | 50.0% |
| AAGCTCTTTGCGGTCATACC+TGG | - | chr5_1:5410562-5410581 | None:intergenic | 50.0% | |
| ATGGGGAGCAAAGCTCTTTG+CGG | - | chr5_1:5410572-5410591 | None:intergenic | 50.0% | |
| AAGAGCTTTGCTCCCCATTC+TGG | + | chr5_1:5410574-5410593 | Msa0713290:intron | 50.0% | |
| GCATTGCATGCAGAGATACC+TGG | + | chr5_1:5410631-5410650 | Msa0713290:intron | 50.0% | |
| GGCAAGAAGAAGGGCCTAAT+GGG | + | chr5_1:5411024-5411043 | Msa0713290:CDS | 50.0% | |
| GCAAGAAGAAGGGCCTAATG+GGG | + | chr5_1:5411025-5411044 | Msa0713290:CDS | 50.0% | |
| ! | TTTTACCGTGCAGAGAGTCG+AGG | + | chr5_1:5411740-5411759 | Msa0713290:CDS | 50.0% |
| ATTGACCTCGACTCTCTGCA+CGG | - | chr5_1:5411748-5411767 | None:intergenic | 50.0% | |
| CAGAGAGTCGAGGTCAATCA+TGG | + | chr5_1:5411750-5411769 | Msa0713290:CDS | 50.0% | |
| GACAAGGGGGAACTGTTTAC+GGG | + | chr5_1:5412105-5412124 | Msa0713290:intron | 50.0% | |
| ACAAGGGGGAACTGTTTACG+GGG | + | chr5_1:5412106-5412125 | Msa0713290:intron | 50.0% | |
| ! | GCTGAGGCATCAAATCTCCT+GGG | - | chr5_1:5412506-5412525 | None:intergenic | 50.0% |
| ! | TGCTGAGGCATCAAATCTCC+TGG | - | chr5_1:5412507-5412526 | None:intergenic | 50.0% |
| TCCCCACCTTACCTGATGTT+TGG | + | chr5_1:5413303-5413322 | Msa0713290:CDS | 50.0% | |
| ! | GGGTCAACGTTGGATTTGGT+TGG | + | chr5_1:5409821-5409840 | Msa0713290:CDS | 50.0% |
| TGGGGTTCAGCTGTGAAATG+GGG | + | chr5_1:5409893-5409912 | Msa0713290:CDS | 50.0% | |
| TTGTGGATCCAAATTCGGCG+AGG | + | chr5_1:5410033-5410052 | Msa0713290:CDS | 50.0% | |
| GTAACGTACCTCGCCGAATT+TGG | - | chr5_1:5410044-5410063 | None:intergenic | 50.0% | |
| GGATAGACCCAAATGGAAGG+GGG | - | chr5_1:5410196-5410215 | None:intergenic | 50.0% | |
| GGAACTTGCCTGTTTAGGCT+TGG | + | chr5_1:5410449-5410468 | Msa0713290:CDS | 50.0% | |
| !! | CTGGCTCGAGAGATTAGTCT+CGG | - | chr5_1:5410543-5410562 | None:intergenic | 50.0% |
| AAGCTCTTTGCGGTCATACC+TGG | - | chr5_1:5410562-5410581 | None:intergenic | 50.0% | |
| ATGGGGAGCAAAGCTCTTTG+CGG | - | chr5_1:5410572-5410591 | None:intergenic | 50.0% | |
| AAGAGCTTTGCTCCCCATTC+TGG | + | chr5_1:5410574-5410593 | Msa0713290:intron | 50.0% | |
| GCATTGCATGCAGAGATACC+TGG | + | chr5_1:5410631-5410650 | Msa0713290:intron | 50.0% | |
| GGCAAGAAGAAGGGCCTAAT+GGG | + | chr5_1:5411024-5411043 | Msa0713290:CDS | 50.0% | |
| GCAAGAAGAAGGGCCTAATG+GGG | + | chr5_1:5411025-5411044 | Msa0713290:CDS | 50.0% | |
| ! | TTTTACCGTGCAGAGAGTCG+AGG | + | chr5_1:5411740-5411759 | Msa0713290:CDS | 50.0% |
| ATTGACCTCGACTCTCTGCA+CGG | - | chr5_1:5411748-5411767 | None:intergenic | 50.0% | |
| CAGAGAGTCGAGGTCAATCA+TGG | + | chr5_1:5411750-5411769 | Msa0713290:CDS | 50.0% | |
| GACAAGGGGGAACTGTTTAC+GGG | + | chr5_1:5412105-5412124 | Msa0713290:intron | 50.0% | |
| ACAAGGGGGAACTGTTTACG+GGG | + | chr5_1:5412106-5412125 | Msa0713290:intron | 50.0% | |
| ! | GCTGAGGCATCAAATCTCCT+GGG | - | chr5_1:5412506-5412525 | None:intergenic | 50.0% |
| ! | TGCTGAGGCATCAAATCTCC+TGG | - | chr5_1:5412507-5412526 | None:intergenic | 50.0% |
| TCCCCACCTTACCTGATGTT+TGG | + | chr5_1:5413303-5413322 | Msa0713290:CDS | 50.0% | |
| ! | GGTGTTTTGTGGGAATCGGG+AGG | + | chr5_1:5410009-5410028 | Msa0713290:CDS | 55.0% |
| !! | CGAGAGATTAGTCTCGGCAG+AGG | - | chr5_1:5410537-5410556 | None:intergenic | 55.0% |
| CGAGACTAATCTCTCGAGCC+AGG | + | chr5_1:5410541-5410560 | Msa0713290:CDS | 55.0% | |
| AGAGATTGATCCCTCGAGCC+GGG | - | chr5_1:5410605-5410624 | None:intergenic | 55.0% | |
| CAGAGATTGATCCCTCGAGC+CGG | - | chr5_1:5410606-5410625 | None:intergenic | 55.0% | |
| AGGACAGCTTAGCCCCTGAA+CGG | + | chr5_1:5411003-5411022 | Msa0713290:CDS | 55.0% | |
| CCCTTCTTCTTGCCGTTCAG+GGG | - | chr5_1:5411018-5411037 | None:intergenic | 55.0% | |
| CCCCTGAACGGCAAGAAGAA+GGG | + | chr5_1:5411015-5411034 | Msa0713290:CDS | 55.0% | |
| GCCCTTCTTCTTGCCGTTCA+GGG | - | chr5_1:5411019-5411038 | None:intergenic | 55.0% | |
| CGGCAAGAAGAAGGGCCTAA+TGG | + | chr5_1:5411023-5411042 | Msa0713290:CDS | 55.0% | |
| TTGCCTATGCGCCATTGTGC+AGG | + | chr5_1:5411710-5411729 | Msa0713290:CDS | 55.0% | |
| ! | GGTGTTTTGTGGGAATCGGG+AGG | + | chr5_1:5410009-5410028 | Msa0713290:CDS | 55.0% |
| !! | CGAGAGATTAGTCTCGGCAG+AGG | - | chr5_1:5410537-5410556 | None:intergenic | 55.0% |
| CGAGACTAATCTCTCGAGCC+AGG | + | chr5_1:5410541-5410560 | Msa0713290:CDS | 55.0% | |
| AGAGATTGATCCCTCGAGCC+GGG | - | chr5_1:5410605-5410624 | None:intergenic | 55.0% | |
| CAGAGATTGATCCCTCGAGC+CGG | - | chr5_1:5410606-5410625 | None:intergenic | 55.0% | |
| AGGACAGCTTAGCCCCTGAA+CGG | + | chr5_1:5411003-5411022 | Msa0713290:CDS | 55.0% | |
| CCCTTCTTCTTGCCGTTCAG+GGG | - | chr5_1:5411018-5411037 | None:intergenic | 55.0% | |
| CCCCTGAACGGCAAGAAGAA+GGG | + | chr5_1:5411015-5411034 | Msa0713290:CDS | 55.0% | |
| GCCCTTCTTCTTGCCGTTCA+GGG | - | chr5_1:5411019-5411038 | None:intergenic | 55.0% | |
| CGGCAAGAAGAAGGGCCTAA+TGG | + | chr5_1:5411023-5411042 | Msa0713290:CDS | 55.0% | |
| TTGCCTATGCGCCATTGTGC+AGG | + | chr5_1:5411710-5411729 | Msa0713290:CDS | 55.0% | |
| TGTGGGAATCGGGAGGCTTG+TGG | + | chr5_1:5410016-5410035 | Msa0713290:CDS | 60.0% | |
| CTCCCCATTCTGGTCCTACC+CGG | + | chr5_1:5410584-5410603 | Msa0713290:intron | 60.0% | |
| AGCCGGGTAGGACCAGAATG+GGG | - | chr5_1:5410589-5410608 | None:intergenic | 60.0% | |
| GAGCCGGGTAGGACCAGAAT+GGG | - | chr5_1:5410590-5410609 | None:intergenic | 60.0% | |
| ATTGATCCCTCGAGCCGGGT+AGG | - | chr5_1:5410601-5410620 | None:intergenic | 60.0% | |
| GCCCCTGAACGGCAAGAAGA+AGG | + | chr5_1:5411014-5411033 | Msa0713290:CDS | 60.0% | |
| GGCCCTTCTTCTTGCCGTTC+AGG | - | chr5_1:5411020-5411039 | None:intergenic | 60.0% | |
| CCGTGTGTGGAGCACAGTGA+GGG | - | chr5_1:5411670-5411689 | None:intergenic | 60.0% | |
| CCCTCACTGTGCTCCACACA+CGG | + | chr5_1:5411667-5411686 | Msa0713290:CDS | 60.0% | |
| ACCGTGTGTGGAGCACAGTG+AGG | - | chr5_1:5411671-5411690 | None:intergenic | 60.0% | |
| CAGCCTGCACAATGGCGCAT+AGG | - | chr5_1:5411716-5411735 | None:intergenic | 60.0% | |
| TGTGGGAATCGGGAGGCTTG+TGG | + | chr5_1:5410016-5410035 | Msa0713290:CDS | 60.0% | |
| CTCCCCATTCTGGTCCTACC+CGG | + | chr5_1:5410584-5410603 | Msa0713290:intron | 60.0% | |
| AGCCGGGTAGGACCAGAATG+GGG | - | chr5_1:5410589-5410608 | None:intergenic | 60.0% | |
| GAGCCGGGTAGGACCAGAAT+GGG | - | chr5_1:5410590-5410609 | None:intergenic | 60.0% | |
| ATTGATCCCTCGAGCCGGGT+AGG | - | chr5_1:5410601-5410620 | None:intergenic | 60.0% | |
| GCCCCTGAACGGCAAGAAGA+AGG | + | chr5_1:5411014-5411033 | Msa0713290:CDS | 60.0% | |
| GGCCCTTCTTCTTGCCGTTC+AGG | - | chr5_1:5411020-5411039 | None:intergenic | 60.0% | |
| CCGTGTGTGGAGCACAGTGA+GGG | - | chr5_1:5411670-5411689 | None:intergenic | 60.0% | |
| CCCTCACTGTGCTCCACACA+CGG | + | chr5_1:5411667-5411686 | Msa0713290:CDS | 60.0% | |
| ACCGTGTGTGGAGCACAGTG+AGG | - | chr5_1:5411671-5411690 | None:intergenic | 60.0% | |
| CAGCCTGCACAATGGCGCAT+AGG | - | chr5_1:5411716-5411735 | None:intergenic | 60.0% | |
| CGAGCCGGGTAGGACCAGAA+TGG | - | chr5_1:5410591-5410610 | None:intergenic | 65.0% | |
| ! | TTCTGGTCCTACCCGGCTCG+AGG | + | chr5_1:5410591-5410610 | Msa0713290:intron | 65.0% |
| ! | TCTGGTCCTACCCGGCTCGA+GGG | + | chr5_1:5410592-5410611 | Msa0713290:intron | 65.0% |
| CGAGCCGGGTAGGACCAGAA+TGG | - | chr5_1:5410591-5410610 | None:intergenic | 65.0% | |
| ! | TTCTGGTCCTACCCGGCTCG+AGG | + | chr5_1:5410591-5410610 | Msa0713290:intron | 65.0% |
| ! | TCTGGTCCTACCCGGCTCGA+GGG | + | chr5_1:5410592-5410611 | Msa0713290:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5409532 | 5413632 | 5409532 | ID=Msa0713290;Name=Msa0713290 |
| chr5_1 | mRNA | 5409532 | 5413632 | 5409532 | ID=Msa0713290-mRNA-1;Parent=Msa0713290;Name=Msa0713290-mRNA-1;_AED=0.15;_eAED=0.15;_QI=145|0.5|0.71|0.71|1|1|7|229|385 |
| chr5_1 | exon | 5409532 | 5410054 | 5409532 | ID=Msa0713290-mRNA-1:exon:2378;Parent=Msa0713290-mRNA-1 |
| chr5_1 | exon | 5410440 | 5410562 | 5410440 | ID=Msa0713290-mRNA-1:exon:2379;Parent=Msa0713290-mRNA-1 |
| chr5_1 | exon | 5410761 | 5410787 | 5410761 | ID=Msa0713290-mRNA-1:exon:2380;Parent=Msa0713290-mRNA-1 |
| chr5_1 | exon | 5410984 | 5411091 | 5410984 | ID=Msa0713290-mRNA-1:exon:2381;Parent=Msa0713290-mRNA-1 |
| chr5_1 | exon | 5411415 | 5411459 | 5411415 | ID=Msa0713290-mRNA-1:exon:2382;Parent=Msa0713290-mRNA-1 |
| chr5_1 | exon | 5411662 | 5411799 | 5411662 | ID=Msa0713290-mRNA-1:exon:2383;Parent=Msa0713290-mRNA-1 |
| chr5_1 | exon | 5413065 | 5413632 | 5413065 | ID=Msa0713290-mRNA-1:exon:2384;Parent=Msa0713290-mRNA-1 |
| chr5_1 | five_prime_UTR | 5409532 | 5409676 | 5409532 | ID=Msa0713290-mRNA-1:five_prime_utr;Parent=Msa0713290-mRNA-1 |
| chr5_1 | CDS | 5409677 | 5410054 | 5409677 | ID=Msa0713290-mRNA-1:cds;Parent=Msa0713290-mRNA-1 |
| chr5_1 | CDS | 5410440 | 5410562 | 5410440 | ID=Msa0713290-mRNA-1:cds;Parent=Msa0713290-mRNA-1 |
| chr5_1 | CDS | 5410761 | 5410787 | 5410761 | ID=Msa0713290-mRNA-1:cds;Parent=Msa0713290-mRNA-1 |
| chr5_1 | CDS | 5410984 | 5411091 | 5410984 | ID=Msa0713290-mRNA-1:cds;Parent=Msa0713290-mRNA-1 |
| chr5_1 | CDS | 5411415 | 5411459 | 5411415 | ID=Msa0713290-mRNA-1:cds;Parent=Msa0713290-mRNA-1 |
| chr5_1 | CDS | 5411662 | 5411799 | 5411662 | ID=Msa0713290-mRNA-1:cds;Parent=Msa0713290-mRNA-1 |
| chr5_1 | CDS | 5413065 | 5413403 | 5413065 | ID=Msa0713290-mRNA-1:cds;Parent=Msa0713290-mRNA-1 |
| chr5_1 | three_prime_UTR | 5413404 | 5413632 | 5413404 | ID=Msa0713290-mRNA-1:three_prime_utr;Parent=Msa0713290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
