AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0493790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493790 MtrunA17_Chr1g0212771 78.027 223 26 1 1 223 1 200 1.33e-122 348
Msa0493790 MtrunA17_Chr8g0355351 68.613 274 44 4 4 277 8 239 2.67e-121 346
Msa0493790 MtrunA17_Chr1g0212741 56.835 278 75 6 2 276 4 239 1.33e-94 278
Msa0493790 MtrunA17_Chr7g0229201 59.567 277 69 5 2 276 3 238 1.75e-94 278
Msa0493790 MtrunA17_Chr0c02g0489781 59.567 277 69 5 2 276 3 238 1.75e-94 278
Msa0493790 MtrunA17_Chr7g0229211 47.335 319 74 5 3 276 2 271 4.51e-78 238
Msa0493790 MtrunA17_Chr0c02g0489791 44.781 297 78 4 3 254 2 257 6.05e-70 217
Msa0493790 MtrunA17_Chr8g0355371 44.558 294 80 4 3 254 2 254 3.41e-68 212
Msa0493790 MtrunA17_Chr1g0212761 76.800 125 29 0 4 128 2 126 1.83e-63 196
Msa0493790 MtrunA17_Chr1g0212731 33.205 259 89 9 4 253 7 190 1.25e-31 116
Msa0493790 MtrunA17_Chr1g0212781 55.046 109 46 1 5 113 2 107 2.62e-31 120
Msa0493790 MtrunA17_Chr1g0212781 37.063 143 48 4 113 253 181 283 6.18e-17 80.1
Msa0493790 MtrunA17_Chr7g0241251 27.915 283 149 7 2 277 5 239 7.69e-25 102
Msa0493790 MtrunA17_Chr7g0241421 29.044 272 131 7 10 275 15 230 8.94e-25 103
Msa0493790 MtrunA17_Chr7g0241421 27.778 270 145 7 4 270 252 474 8.03e-19 85.9
Msa0493790 MtrunA17_Chr8g0355361 41.935 124 44 4 4 122 15 115 1.86e-22 89.7
Msa0493790 MtrunA17_Chr1g0212751 41.860 129 47 4 4 127 15 120 1.98e-22 90.9
Msa0493790 MtrunA17_Chr7g0239911 26.690 281 149 8 2 276 3 232 7.20e-22 94.7
Msa0493790 MtrunA17_Chr7g0239901 25.979 281 152 7 1 276 30 259 2.18e-21 93.6
Msa0493790 MtrunA17_Chr7g0237451 29.286 280 135 11 1 276 1 221 2.79e-21 92.8
Msa0493790 MtrunA17_Chr4g0008511 29.861 288 144 9 3 276 2 245 3.17e-21 92.8
Msa0493790 MtrunA17_Chr7g0239921 27.875 287 144 8 1 276 27 261 3.56e-21 92.8
Msa0493790 MtrunA17_Chr7g0238961 31.010 287 147 11 4 276 260 509 2.90e-20 90.5
Msa0493790 MtrunA17_Chr7g0239731 28.826 281 141 8 1 275 1 228 4.10e-20 89.7
Msa0493790 MtrunA17_Chr4g0008481 27.491 291 150 7 1 274 1 247 1.31e-19 88.2
Msa0493790 MtrunA17_Chr4g0008481 39.241 79 46 1 9 87 274 350 3.74e-12 66.2
Msa0493790 MtrunA17_Chr7g0239891 30.175 285 128 13 1 274 1 225 3.09e-19 87.0
Msa0493790 MtrunA17_Chr1g0166321 27.622 286 141 9 9 277 14 250 3.66e-19 87.0
Msa0493790 MtrunA17_Chr7g0218371 36.585 123 62 2 9 115 14 136 8.18e-19 85.9
Msa0493790 MtrunA17_Chr7g0239851 28.826 281 129 11 10 276 11 234 9.50e-19 85.5
Msa0493790 MtrunA17_Chr7g0238971 27.046 281 150 8 2 276 5 236 1.10e-18 85.5
Msa0493790 MtrunA17_Chr4g0007631 28.520 277 137 10 10 274 13 240 1.85e-18 84.7
Msa0493790 MtrunA17_Chr4g0007631 42.169 83 46 1 5 87 263 343 1.37e-13 70.5
Msa0493790 MtrunA17_Chr7g0241261 26.950 282 142 8 1 277 1 223 5.32e-18 83.2
Msa0493790 MtrunA17_Chr7g0241331 26.545 275 150 7 8 276 3 231 1.23e-17 82.4
Msa0493790 MtrunA17_Chr7g0239831 28.470 281 146 11 2 276 3 234 1.48e-16 79.3
Msa0493790 MtrunA17_Chr4g0007341 27.437 277 138 9 12 274 16 243 1.56e-16 79.0
Msa0493790 MtrunA17_Chr3g0078631 26.642 274 131 7 9 276 22 231 2.38e-16 78.6
Msa0493790 MtrunA17_Chr7g0241201 24.000 250 139 7 9 253 15 218 2.63e-16 78.2
Msa0493790 MtrunA17_Chr2g0291981 34.146 123 71 4 1 118 6 123 3.40e-16 73.9
Msa0493790 MtrunA17_Chr4g0007321 26.374 273 154 7 1 270 53 281 4.32e-16 76.6
Msa0493790 MtrunA17_Chr4g0007231 24.907 269 141 8 1 253 1 224 3.52e-15 73.2
Msa0493790 MtrunA17_Chr7g0241161 23.636 275 120 7 9 276 15 206 1.15e-14 73.6
Msa0493790 MtrunA17_Chr7g0239841 27.273 286 138 10 1 273 1 229 1.74e-14 72.8
Msa0493790 MtrunA17_Chr4g0007271 41.667 84 47 1 4 87 229 310 3.21e-14 72.4
Msa0493790 MtrunA17_Chr4g0007271 32.110 109 59 1 7 100 10 118 4.39e-11 62.8
Msa0493790 MtrunA17_Chr7g0241231 33.333 117 65 3 9 118 7 117 1.48e-13 67.0
Msa0493790 MtrunA17_Chr7g0241271 23.571 280 160 5 3 277 8 238 2.93e-13 68.9
Msa0493790 MtrunA17_Chr7g0241311 26.667 225 116 9 9 228 10 190 6.25e-13 67.0
Msa0493790 MtrunA17_Chr4g0007251 27.341 267 155 8 4 270 243 470 7.31e-13 68.2
Msa0493790 MtrunA17_Chr7g0241431 25.000 228 117 7 15 236 1 180 8.06e-13 68.2
Msa0493790 MtrunA17_Chr7g0241361 40.909 88 47 1 5 87 12 99 2.39e-12 65.5
Msa0493790 MtrunA17_Chr7g0241351 31.395 172 102 7 9 173 16 178 3.32e-12 64.7
Msa0493790 MtrunA17_Chr7g0241171 44.444 72 39 1 198 269 70 140 2.44e-11 60.5
Msa0493790 MtrunA17_Chr7g0241211 43.836 73 40 1 198 270 113 184 8.50e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493790 AT3G09110.1 27.682 289 139 7 1 276 1 232 2.51e-22 95.1
Msa0493790 AT5G01130.1 28.014 282 142 6 1 276 1 227 5.90e-22 95.1
Msa0493790 AT3G09140.2 26.132 287 166 6 1 277 1 251 1.97e-20 90.9
Msa0493790 AT5G01120.1 25.606 289 154 7 1 277 1 240 7.34e-19 86.3
Msa0493790 AT5G43240.1 26.207 290 154 8 1 277 1 243 3.20e-17 81.6
Msa0493790 AT5G43240.3 26.207 290 154 8 1 277 1 243 3.20e-17 81.6
Msa0493790 AT5G43240.4 26.207 290 154 8 1 277 1 243 3.20e-17 81.6
Msa0493790 AT5G01150.1 24.211 285 157 5 1 276 1 235 2.28e-16 79.0
Msa0493790 AT3G09140.1 34.507 142 80 4 1 134 1 137 2.98e-16 79.0
Msa0493790 AT3G09120.1 25.725 276 159 6 5 276 2 235 3.12e-13 68.9

Find 103 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATACTCACTCTCTTAT+TGG 0.179334 3_4:-19736307 Msa0493790:three_prime_UTR
GAAAGATGTTATCACATTTA+TGG 0.180834 3_4:-19737124 Msa0493790:CDS
GACCGTGGTTCTCTTCCTTT+TGG 0.187396 3_4:-19737318 Msa0493790:CDS
CATCATCAATGTCTTCATTC+TGG 0.201655 3_4:+19737436 None:intergenic
GTAACAGAGAACATGGATTT+TGG 0.232232 3_4:-19736750 Msa0493790:three_prime_UTR
TTTGGGGCTAGTCCTGCTTT+TGG 0.253034 3_4:-19737252 Msa0493790:CDS
TTTGGGGCTAGTCCTGCTTT+TGG 0.253034 3_4:-19737282 Msa0493790:CDS
TTTGGGGCTAGTCCTGCTTT+TGG 0.267199 3_4:-19737300 Msa0493790:CDS
AATGGAATGGTTGGTAGTTT+AGG 0.275746 3_4:-19737579 Msa0493790:CDS
GTGGAAGAGCTTTGAGCTCT+TGG 0.285273 3_4:+19737480 None:intergenic
CACAAACCCACTCTTAATAT+CGG 0.339765 3_4:+19737146 None:intergenic
TTATTGGTTTAAATCATTGT+AGG 0.344009 3_4:-19736291 Msa0493790:three_prime_UTR
ATACCTCTGTAAGTGCTCTT+TGG 0.345221 3_4:-19736593 Msa0493790:three_prime_UTR
AGTTCATGGATTTGATCATT+TGG 0.346307 3_4:+19736469 None:intergenic
AAGTTCGTTATGTCGGAAAA+AGG 0.346729 3_4:-19737191 Msa0493790:CDS
TACCTCTGTAAGTGCTCTTT+GGG 0.350845 3_4:-19736592 Msa0493790:three_prime_UTR
ATTTATGGTGATGGATGATT+TGG 0.351782 3_4:-19737109 Msa0493790:CDS
AGGACATCCTTAGTTTGGTT+TGG 0.370323 3_4:+19737510 None:intergenic
CAACAGTGTGATGCTTGATA+TGG 0.370669 3_4:+19737068 None:intergenic
TTAGCAGGACATCCTTAGTT+TGG 0.377274 3_4:+19737505 None:intergenic
AATCAAAGAATACAAGTTCA+TGG 0.380065 3_4:+19736455 None:intergenic
TGAAGTTAGCTAATGAAGTT+AGG 0.381163 3_4:-19736772 Msa0493790:three_prime_UTR
TGGAAGAGCTTTGAGCTCTT+GGG 0.383995 3_4:+19737481 None:intergenic
ATCATCAATGTCTTCATTCT+GGG 0.389042 3_4:+19737437 None:intergenic
ACAAGAAGTTTAGGTGGATT+CGG 0.399835 3_4:+19736533 None:intergenic
ATAGTCTTCGAGCAGTATAC+TGG 0.410060 3_4:+19737222 None:intergenic
CAACCATTCCATTTGTGCTT+AGG 0.411279 3_4:+19737589 None:intergenic
AGGAAGAGAACCACGGTCAT+TGG 0.418470 3_4:+19737323 None:intergenic
GTCCTGACCCTGGTGGTGAC+CGG 0.421928 3_4:-19736558 Msa0493790:three_prime_UTR
TTTGAGCTCTTGGGTTTAGC+AGG 0.423021 3_4:+19737490 None:intergenic
AACACTTGTCAATACCATCT+TGG 0.428370 3_4:+19736859 None:intergenic
ATTCGGCTCCGGTCACCACC+AGG 0.447582 3_4:+19736550 None:intergenic
GATTGAAACCTTGCAAGAAA+AGG 0.450000 3_4:-19737025 Msa0493790:CDS
GCAGACTTCATTATACTAAT+CGG 0.450877 3_4:-19736409 Msa0493790:three_prime_UTR
CTGTAAGTGCTCTTTGGGTC+CGG 0.455201 3_4:-19736587 Msa0493790:three_prime_UTR
AGCTTAACCACGGTGCCAAT+TGG 0.456102 3_4:+19737612 None:intergenic
CAAGAAAAGGTTGTTGAGAT+GGG 0.463384 3_4:-19737012 Msa0493790:CDS
AAAATCAGTTGGTAAGGAAC+GGG 0.468382 3_4:-19736690 Msa0493790:three_prime_UTR
AGCTCTTCCACTGAAATCTC+AGG 0.471238 3_4:-19737468 Msa0493790:CDS
GTTAAGCTCCTAAGCACAAA+TGG 0.472625 3_4:-19737597 Msa0493790:CDS
CCAAAAGCAGCCCCAAAAGC+AGG 0.473527 3_4:+19737270 None:intergenic
ATAGAACACACACAAAATAG+TGG 0.477413 3_4:-19736254 Msa0493790:three_prime_UTR
GCAAGAAAAGGTTGTTGAGA+TGG 0.482167 3_4:-19737013 Msa0493790:CDS
CAATGTCTTCATTCTGGGTA+AGG 0.483882 3_4:+19737442 None:intergenic
CTCCGGTCACCACCAGGGTC+AGG 0.488916 3_4:+19736556 None:intergenic
ACCACGGTCATTGGCAGACC+TGG 0.490771 3_4:+19737332 None:intergenic
AGTTTAGGTGGATTCGGCTC+CGG 0.492682 3_4:+19736539 None:intergenic
AATTTGCTATGCTTGCCAAT+TGG 0.494602 3_4:-19737627 Msa0493790:CDS
AAGAAGTTTCAGTGACACTT+TGG 0.494769 3_4:+19737716 None:intergenic
CACAACCTTCTGACGGGAAG+TGG 0.499927 3_4:+19736667 None:intergenic
AATAATAATAAACTAGAAGA+AGG 0.500712 3_4:+19736721 None:intergenic
TTAGTCAAAGGGAGAGTATG+TGG 0.504346 3_4:+19736378 None:intergenic
ACCTCAAAGTCACACTTACC+TGG 0.508917 3_4:+19737384 None:intergenic
CCGGAGGCCTGTCCTGACCC+TGG 0.510944 3_4:-19736568 Msa0493790:three_prime_UTR
AACAGTGAAGTTCGTTATGT+CGG 0.513095 3_4:-19737198 Msa0493790:CDS
TGTTATCACATTTATGGTGA+TGG 0.515514 3_4:-19737118 Msa0493790:CDS
CCAGGGTCAGGACAGGCCTC+CGG 0.519370 3_4:+19736568 None:intergenic
GGTTTGGTTGCATGTAACTC+TGG 0.520873 3_4:+19737526 None:intergenic
TCCAGGTAAGTGTGACTTTG+AGG 0.521666 3_4:-19737385 Msa0493790:CDS
AAAGCAGGACTAGCCCCAAA+AGG 0.523257 3_4:+19737303 None:intergenic
GCAGGACTAGCCCCAAAAGC+AGG 0.523795 3_4:+19737288 None:intergenic
CATGCAACCAAACCAAACTA+AGG 0.523850 3_4:-19737517 Msa0493790:CDS
ACAGGGTATCAAGTTGCTAA+AGG 0.526772 3_4:-19736894 Msa0493790:intron
AGAAGGAAAATTGATATGCA+AGG 0.529895 3_4:-19736829 Msa0493790:exon
CGATGTGAGGACGGTGTTGG+CGG 0.530804 3_4:-19736627 Msa0493790:three_prime_UTR
GTCACCACCAGGGTCAGGAC+AGG 0.534225 3_4:+19736561 None:intergenic
CACCGTCCTCACATCGGCAG+CGG 0.536392 3_4:+19736634 None:intergenic
ACCGTCCTCACATCGGCAGC+GGG 0.536523 3_4:+19736635 None:intergenic
CTAAGCACAAATGGAATGGT+TGG 0.538348 3_4:-19737588 Msa0493790:CDS
ACACCACTCGTTGTACTGCC+AGG 0.539159 3_4:-19737350 Msa0493790:CDS
GGCTTCTCTGCAATCCAAGA+TGG 0.558204 3_4:-19736873 Msa0493790:CDS
GATGTGAGGACGGTGTTGGC+GGG 0.564766 3_4:-19736626 Msa0493790:three_prime_UTR
TCCCGCTGCCGATGTGAGGA+CGG 0.565951 3_4:-19736636 Msa0493790:three_prime_UTR
CGATTCCCGCTGCCGATGTG+AGG 0.569882 3_4:-19736640 Msa0493790:three_prime_UTR
AGAGTTTCCGATATTAAGAG+TGG 0.573501 3_4:-19737153 Msa0493790:CDS
AAGTTTCAGTGACACTTTGG+TGG 0.576601 3_4:+19737719 None:intergenic
GCTCCTAAGCACAAATGGAA+TGG 0.578156 3_4:-19737592 Msa0493790:CDS
ATCATTGTAGGTCTACACAT+TGG 0.582596 3_4:-19736279 Msa0493790:three_prime_UTR
ATGCTTGATATGGTTGACAT+TGG 0.584309 3_4:+19737078 None:intergenic
ACTGGACTAGCCCCAAAAGC+AGG 0.584508 3_4:+19737240 None:intergenic
GACATTGATGATGAAGATGA+AGG 0.587367 3_4:-19737426 Msa0493790:CDS
TGTTGAGATGGGAATGGATG+AGG 0.588340 3_4:-19737001 Msa0493790:intron
TAGAACACACACAAAATAGT+GGG 0.593968 3_4:-19736253 Msa0493790:three_prime_UTR
ACGGGCCACTTCCCGTCAGA+AGG 0.594117 3_4:-19736672 Msa0493790:three_prime_UTR
ACTAAGTTATACATGTGTCC+AGG 0.594908 3_4:-19737402 Msa0493790:CDS
CGAACACACAACCTTCTGAC+GGG 0.595520 3_4:+19736661 None:intergenic
TTCGGCTCCGGTCACCACCA+GGG 0.595826 3_4:+19736551 None:intergenic
TGCCGATGTGAGGACGGTGT+TGG 0.601070 3_4:-19736630 Msa0493790:three_prime_UTR
AAGTTAGGTAACAGAGAACA+TGG 0.607279 3_4:-19736757 Msa0493790:three_prime_UTR
TCGAACACACAACCTTCTGA+CGG 0.608143 3_4:+19736660 None:intergenic
GAGTTTCCGATATTAAGAGT+GGG 0.614629 3_4:-19737152 Msa0493790:CDS
AAAGGTTGTTGAGATGGGAA+TGG 0.615414 3_4:-19737007 Msa0493790:CDS
AAAGTGTTCAACAGAAAGTG+TGG 0.616822 3_4:+19736331 None:intergenic
TAAGTGCTCTTTGGGTCCGG+AGG 0.629400 3_4:-19736584 Msa0493790:three_prime_UTR
GCCAGGTCTGCCAATGACCG+TGG 0.633912 3_4:-19737333 Msa0493790:CDS
CGCCAACACCGTCCTCACAT+CGG 0.635880 3_4:+19736628 None:intergenic
AAGGAAGCCTGAGATTTCAG+TGG 0.655993 3_4:+19737461 None:intergenic
TGTGCTTAGGAGCTTAACCA+CGG 0.668356 3_4:+19737602 None:intergenic
GAGGCCTGTCCTGACCCTGG+TGG 0.669905 3_4:-19736565 Msa0493790:three_prime_UTR
ATGCTTGCCAATTGGCACCG+TGG 0.701156 3_4:-19737619 Msa0493790:CDS
GACCCAAAGAGCACTTACAG+AGG 0.702855 3_4:+19736590 None:intergenic
AGACCTGGCAGTACAACGAG+TGG 0.704338 3_4:+19737347 None:intergenic
CCCCAAAAGGAAGAGAACCA+CGG 0.716251 3_4:+19737316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTATTTTTGTAAC+AGG - chr3_4:19737062-19737081 Msa0493790:CDS 15.0%
!!! TTTTTTCTATTTTTGTAACA+GGG - chr3_4:19737063-19737082 Msa0493790:CDS 15.0%
!! AATAATAATAAACTAGAAGA+AGG + chr3_4:19737256-19737275 None:intergenic 15.0%
!!! TTTTTTTTTACAAGAAGTTT+AGG + chr3_4:19737453-19737472 None:intergenic 15.0%
!!! TTCTAAAAATTTTAGTCAAA+GGG + chr3_4:19737610-19737629 None:intergenic 15.0%
!!! ATTCTAAAAATTTTAGTCAA+AGG + chr3_4:19737611-19737630 None:intergenic 15.0%
!!! TTTTTTTCTATTTTTGTAAC+AGG - chr3_4:19737062-19737081 Msa0493790:CDS 15.0%
!!! TTTTTTCTATTTTTGTAACA+GGG - chr3_4:19737063-19737082 Msa0493790:CDS 15.0%
!! AATAATAATAAACTAGAAGA+AGG + chr3_4:19737256-19737275 None:intergenic 15.0%
!!! TTTTTTTTTACAAGAAGTTT+AGG + chr3_4:19737453-19737472 None:intergenic 15.0%
!!! TTCTAAAAATTTTAGTCAAA+GGG + chr3_4:19737610-19737629 None:intergenic 15.0%
!!! ATTCTAAAAATTTTAGTCAA+AGG + chr3_4:19737611-19737630 None:intergenic 15.0%
!!! TGACTAAAATTTTTAGAATG+AGG - chr3_4:19737612-19737631 Msa0493790:CDS 20.0%
!!! TTATTGGTTTAAATCATTGT+AGG - chr3_4:19737683-19737702 Msa0493790:CDS 20.0%
!!! TGACTAAAATTTTTAGAATG+AGG - chr3_4:19737612-19737631 Msa0493790:CDS 20.0%
!!! TTATTGGTTTAAATCATTGT+AGG - chr3_4:19737683-19737702 Msa0493790:CDS 20.0%
! GAAAGATGTTATCACATTTA+TGG - chr3_4:19736850-19736869 Msa0493790:CDS 25.0%
! ATTACTGCTTAAAAATCAGT+TGG - chr3_4:19737273-19737292 Msa0493790:CDS 25.0%
!!! TTTTTTACAAGAAGTTTAGG+TGG + chr3_4:19737450-19737469 None:intergenic 25.0%
! AATCAAAGAATACAAGTTCA+TGG + chr3_4:19737522-19737541 None:intergenic 25.0%
! GAAAGATGTTATCACATTTA+TGG - chr3_4:19736850-19736869 Msa0493790:CDS 25.0%
! ATTACTGCTTAAAAATCAGT+TGG - chr3_4:19737273-19737292 Msa0493790:CDS 25.0%
!!! TTTTTTACAAGAAGTTTAGG+TGG + chr3_4:19737450-19737469 None:intergenic 25.0%
! AATCAAAGAATACAAGTTCA+TGG + chr3_4:19737522-19737541 None:intergenic 25.0%
ATCATCAATGTCTTCATTCT+GGG + chr3_4:19736540-19736559 None:intergenic 30.0%
TGTTATCACATTTATGGTGA+TGG - chr3_4:19736856-19736875 Msa0493790:CDS 30.0%
!! ATTTATGGTGATGGATGATT+TGG - chr3_4:19736865-19736884 Msa0493790:CDS 30.0%
! CATATCAATTTTCCTTCTTG+AGG + chr3_4:19737143-19737162 None:intergenic 30.0%
AGAAGGAAAATTGATATGCA+AGG - chr3_4:19737145-19737164 Msa0493790:CDS 30.0%
TGAAGTTAGCTAATGAAGTT+AGG - chr3_4:19737202-19737221 Msa0493790:CDS 30.0%
! TGCTTAAAAATCAGTTGGTA+AGG - chr3_4:19737278-19737297 Msa0493790:CDS 30.0%
!! AAAAATCAGTTGGTAAGGAA+CGG - chr3_4:19737283-19737302 Msa0493790:CDS 30.0%
AGTTCATGGATTTGATCATT+TGG + chr3_4:19737508-19737527 None:intergenic 30.0%
GCAGACTTCATTATACTAAT+CGG - chr3_4:19737565-19737584 Msa0493790:CDS 30.0%
TCTAATACTCACTCTCTTAT+TGG - chr3_4:19737667-19737686 Msa0493790:CDS 30.0%
ATAGAACACACACAAAATAG+TGG - chr3_4:19737720-19737739 Msa0493790:CDS 30.0%
TAGAACACACACAAAATAGT+GGG - chr3_4:19737721-19737740 Msa0493790:CDS 30.0%
ATCATCAATGTCTTCATTCT+GGG + chr3_4:19736540-19736559 None:intergenic 30.0%
TGTTATCACATTTATGGTGA+TGG - chr3_4:19736856-19736875 Msa0493790:CDS 30.0%
!! ATTTATGGTGATGGATGATT+TGG - chr3_4:19736865-19736884 Msa0493790:CDS 30.0%
! CATATCAATTTTCCTTCTTG+AGG + chr3_4:19737143-19737162 None:intergenic 30.0%
AGAAGGAAAATTGATATGCA+AGG - chr3_4:19737145-19737164 Msa0493790:CDS 30.0%
TGAAGTTAGCTAATGAAGTT+AGG - chr3_4:19737202-19737221 Msa0493790:CDS 30.0%
! TGCTTAAAAATCAGTTGGTA+AGG - chr3_4:19737278-19737297 Msa0493790:CDS 30.0%
!! AAAAATCAGTTGGTAAGGAA+CGG - chr3_4:19737283-19737302 Msa0493790:CDS 30.0%
AGTTCATGGATTTGATCATT+TGG + chr3_4:19737508-19737527 None:intergenic 30.0%
GCAGACTTCATTATACTAAT+CGG - chr3_4:19737565-19737584 Msa0493790:CDS 30.0%
TCTAATACTCACTCTCTTAT+TGG - chr3_4:19737667-19737686 Msa0493790:CDS 30.0%
ATAGAACACACACAAAATAG+TGG - chr3_4:19737720-19737739 Msa0493790:CDS 30.0%
TAGAACACACACAAAATAGT+GGG - chr3_4:19737721-19737740 Msa0493790:CDS 30.0%
AAGAAGTTTCAGTGACACTT+TGG + chr3_4:19736261-19736280 None:intergenic 35.0%
!! AATTTGCTATGCTTGCCAAT+TGG - chr3_4:19736347-19736366 Msa0493790:three_prime_UTR 35.0%
!! AATGGAATGGTTGGTAGTTT+AGG - chr3_4:19736395-19736414 Msa0493790:three_prime_UTR 35.0%
CATCATCAATGTCTTCATTC+TGG + chr3_4:19736541-19736560 None:intergenic 35.0%
!! GACATTGATGATGAAGATGA+AGG - chr3_4:19736548-19736567 Msa0493790:three_prime_UTR 35.0%
ACTAAGTTATACATGTGTCC+AGG - chr3_4:19736572-19736591 Msa0493790:three_prime_UTR 35.0%
AACAGTGAAGTTCGTTATGT+CGG - chr3_4:19736776-19736795 Msa0493790:three_prime_UTR 35.0%
AAGTTCGTTATGTCGGAAAA+AGG - chr3_4:19736783-19736802 Msa0493790:three_prime_UTR 35.0%
AGAGTTTCCGATATTAAGAG+TGG - chr3_4:19736821-19736840 Msa0493790:exon 35.0%
GAGTTTCCGATATTAAGAGT+GGG - chr3_4:19736822-19736841 Msa0493790:exon 35.0%
CACAAACCCACTCTTAATAT+CGG + chr3_4:19736831-19736850 None:intergenic 35.0%
ATGCTTGATATGGTTGACAT+TGG + chr3_4:19736899-19736918 None:intergenic 35.0%
GATTGAAACCTTGCAAGAAA+AGG - chr3_4:19736949-19736968 Msa0493790:intron 35.0%
CAAGAAAAGGTTGTTGAGAT+GGG - chr3_4:19736962-19736981 Msa0493790:intron 35.0%
AACACTTGTCAATACCATCT+TGG + chr3_4:19737118-19737137 None:intergenic 35.0%
AAGTTAGGTAACAGAGAACA+TGG - chr3_4:19737217-19737236 Msa0493790:CDS 35.0%
! GTAACAGAGAACATGGATTT+TGG - chr3_4:19737224-19737243 Msa0493790:CDS 35.0%
!! AAAATCAGTTGGTAAGGAAC+GGG - chr3_4:19737284-19737303 Msa0493790:CDS 35.0%
! ACAAGAAGTTTAGGTGGATT+CGG + chr3_4:19737444-19737463 None:intergenic 35.0%
! AAAGTGTTCAACAGAAAGTG+TGG + chr3_4:19737646-19737665 None:intergenic 35.0%
ATCATTGTAGGTCTACACAT+TGG - chr3_4:19737695-19737714 Msa0493790:CDS 35.0%
AAGAAGTTTCAGTGACACTT+TGG + chr3_4:19736261-19736280 None:intergenic 35.0%
!! AATTTGCTATGCTTGCCAAT+TGG - chr3_4:19736347-19736366 Msa0493790:three_prime_UTR 35.0%
!! AATGGAATGGTTGGTAGTTT+AGG - chr3_4:19736395-19736414 Msa0493790:three_prime_UTR 35.0%
CATCATCAATGTCTTCATTC+TGG + chr3_4:19736541-19736560 None:intergenic 35.0%
!! GACATTGATGATGAAGATGA+AGG - chr3_4:19736548-19736567 Msa0493790:three_prime_UTR 35.0%
ACTAAGTTATACATGTGTCC+AGG - chr3_4:19736572-19736591 Msa0493790:three_prime_UTR 35.0%
AACAGTGAAGTTCGTTATGT+CGG - chr3_4:19736776-19736795 Msa0493790:three_prime_UTR 35.0%
AAGTTCGTTATGTCGGAAAA+AGG - chr3_4:19736783-19736802 Msa0493790:three_prime_UTR 35.0%
AGAGTTTCCGATATTAAGAG+TGG - chr3_4:19736821-19736840 Msa0493790:exon 35.0%
GAGTTTCCGATATTAAGAGT+GGG - chr3_4:19736822-19736841 Msa0493790:exon 35.0%
CACAAACCCACTCTTAATAT+CGG + chr3_4:19736831-19736850 None:intergenic 35.0%
ATGCTTGATATGGTTGACAT+TGG + chr3_4:19736899-19736918 None:intergenic 35.0%
GATTGAAACCTTGCAAGAAA+AGG - chr3_4:19736949-19736968 Msa0493790:intron 35.0%
CAAGAAAAGGTTGTTGAGAT+GGG - chr3_4:19736962-19736981 Msa0493790:intron 35.0%
AACACTTGTCAATACCATCT+TGG + chr3_4:19737118-19737137 None:intergenic 35.0%
AAGTTAGGTAACAGAGAACA+TGG - chr3_4:19737217-19737236 Msa0493790:CDS 35.0%
! GTAACAGAGAACATGGATTT+TGG - chr3_4:19737224-19737243 Msa0493790:CDS 35.0%
!! AAAATCAGTTGGTAAGGAAC+GGG - chr3_4:19737284-19737303 Msa0493790:CDS 35.0%
! ACAAGAAGTTTAGGTGGATT+CGG + chr3_4:19737444-19737463 None:intergenic 35.0%
! AAAGTGTTCAACAGAAAGTG+TGG + chr3_4:19737646-19737665 None:intergenic 35.0%
ATCATTGTAGGTCTACACAT+TGG - chr3_4:19737695-19737714 Msa0493790:CDS 35.0%
AAGTTTCAGTGACACTTTGG+TGG + chr3_4:19736258-19736277 None:intergenic 40.0%
GTTAAGCTCCTAAGCACAAA+TGG - chr3_4:19736377-19736396 Msa0493790:three_prime_UTR 40.0%
CAACCATTCCATTTGTGCTT+AGG + chr3_4:19736388-19736407 None:intergenic 40.0%
CTAAGCACAAATGGAATGGT+TGG - chr3_4:19736386-19736405 Msa0493790:three_prime_UTR 40.0%
CATGCAACCAAACCAAACTA+AGG - chr3_4:19736457-19736476 Msa0493790:three_prime_UTR 40.0%
! AGGACATCCTTAGTTTGGTT+TGG + chr3_4:19736467-19736486 None:intergenic 40.0%
TTAGCAGGACATCCTTAGTT+TGG + chr3_4:19736472-19736491 None:intergenic 40.0%
CAATGTCTTCATTCTGGGTA+AGG + chr3_4:19736535-19736554 None:intergenic 40.0%
ATAGTCTTCGAGCAGTATAC+TGG + chr3_4:19736755-19736774 None:intergenic 40.0%
TCGTTATGTCGGAAAAAGGA+AGG - chr3_4:19736787-19736806 Msa0493790:three_prime_UTR 40.0%
CAACAGTGTGATGCTTGATA+TGG + chr3_4:19736909-19736928 None:intergenic 40.0%
! CTCAACAACCTTTTCTTGCA+AGG + chr3_4:19736960-19736979 None:intergenic 40.0%
GCAAGAAAAGGTTGTTGAGA+TGG - chr3_4:19736961-19736980 Msa0493790:intron 40.0%
AAAGGTTGTTGAGATGGGAA+TGG - chr3_4:19736967-19736986 Msa0493790:intron 40.0%
! ACAGGGTATCAAGTTGCTAA+AGG - chr3_4:19737080-19737099 Msa0493790:CDS 40.0%
! GACAAGTGTTTTCCTCAAGA+AGG - chr3_4:19737128-19737147 Msa0493790:CDS 40.0%
ATACCTCTGTAAGTGCTCTT+TGG - chr3_4:19737381-19737400 Msa0493790:CDS 40.0%
TACCTCTGTAAGTGCTCTTT+GGG - chr3_4:19737382-19737401 Msa0493790:CDS 40.0%
! TTAGTCAAAGGGAGAGTATG+TGG + chr3_4:19737599-19737618 None:intergenic 40.0%
AAGTTTCAGTGACACTTTGG+TGG + chr3_4:19736258-19736277 None:intergenic 40.0%
GTTAAGCTCCTAAGCACAAA+TGG - chr3_4:19736377-19736396 Msa0493790:three_prime_UTR 40.0%
CAACCATTCCATTTGTGCTT+AGG + chr3_4:19736388-19736407 None:intergenic 40.0%
CTAAGCACAAATGGAATGGT+TGG - chr3_4:19736386-19736405 Msa0493790:three_prime_UTR 40.0%
CATGCAACCAAACCAAACTA+AGG - chr3_4:19736457-19736476 Msa0493790:three_prime_UTR 40.0%
! AGGACATCCTTAGTTTGGTT+TGG + chr3_4:19736467-19736486 None:intergenic 40.0%
TTAGCAGGACATCCTTAGTT+TGG + chr3_4:19736472-19736491 None:intergenic 40.0%
CAATGTCTTCATTCTGGGTA+AGG + chr3_4:19736535-19736554 None:intergenic 40.0%
ATAGTCTTCGAGCAGTATAC+TGG + chr3_4:19736755-19736774 None:intergenic 40.0%
TCGTTATGTCGGAAAAAGGA+AGG - chr3_4:19736787-19736806 Msa0493790:three_prime_UTR 40.0%
CAACAGTGTGATGCTTGATA+TGG + chr3_4:19736909-19736928 None:intergenic 40.0%
! CTCAACAACCTTTTCTTGCA+AGG + chr3_4:19736960-19736979 None:intergenic 40.0%
GCAAGAAAAGGTTGTTGAGA+TGG - chr3_4:19736961-19736980 Msa0493790:intron 40.0%
AAAGGTTGTTGAGATGGGAA+TGG - chr3_4:19736967-19736986 Msa0493790:intron 40.0%
! ACAGGGTATCAAGTTGCTAA+AGG - chr3_4:19737080-19737099 Msa0493790:CDS 40.0%
! GACAAGTGTTTTCCTCAAGA+AGG - chr3_4:19737128-19737147 Msa0493790:CDS 40.0%
ATACCTCTGTAAGTGCTCTT+TGG - chr3_4:19737381-19737400 Msa0493790:CDS 40.0%
TACCTCTGTAAGTGCTCTTT+GGG - chr3_4:19737382-19737401 Msa0493790:CDS 40.0%
! TTAGTCAAAGGGAGAGTATG+TGG + chr3_4:19737599-19737618 None:intergenic 40.0%
TGTGCTTAGGAGCTTAACCA+CGG + chr3_4:19736375-19736394 None:intergenic 45.0%
GCTCCTAAGCACAAATGGAA+TGG - chr3_4:19736382-19736401 Msa0493790:three_prime_UTR 45.0%
! GGTTTGGTTGCATGTAACTC+TGG + chr3_4:19736451-19736470 None:intergenic 45.0%
TTTGAGCTCTTGGGTTTAGC+AGG + chr3_4:19736487-19736506 None:intergenic 45.0%
!! TGGAAGAGCTTTGAGCTCTT+GGG + chr3_4:19736496-19736515 None:intergenic 45.0%
AGCTCTTCCACTGAAATCTC+AGG - chr3_4:19736506-19736525 Msa0493790:three_prime_UTR 45.0%
AAGGAAGCCTGAGATTTCAG+TGG + chr3_4:19736516-19736535 None:intergenic 45.0%
TCCAGGTAAGTGTGACTTTG+AGG - chr3_4:19736589-19736608 Msa0493790:three_prime_UTR 45.0%
ACCTCAAAGTCACACTTACC+TGG + chr3_4:19736593-19736612 None:intergenic 45.0%
! ACCGTGGTTCTCTTCCTTTT+GGG - chr3_4:19736657-19736676 Msa0493790:three_prime_UTR 45.0%
TGTTGAGATGGGAATGGATG+AGG - chr3_4:19736973-19736992 Msa0493790:intron 45.0%
TCGAACACACAACCTTCTGA+CGG + chr3_4:19737317-19737336 None:intergenic 45.0%
TGTGCTTAGGAGCTTAACCA+CGG + chr3_4:19736375-19736394 None:intergenic 45.0%
GCTCCTAAGCACAAATGGAA+TGG - chr3_4:19736382-19736401 Msa0493790:three_prime_UTR 45.0%
! GGTTTGGTTGCATGTAACTC+TGG + chr3_4:19736451-19736470 None:intergenic 45.0%
TTTGAGCTCTTGGGTTTAGC+AGG + chr3_4:19736487-19736506 None:intergenic 45.0%
!! TGGAAGAGCTTTGAGCTCTT+GGG + chr3_4:19736496-19736515 None:intergenic 45.0%
AGCTCTTCCACTGAAATCTC+AGG - chr3_4:19736506-19736525 Msa0493790:three_prime_UTR 45.0%
AAGGAAGCCTGAGATTTCAG+TGG + chr3_4:19736516-19736535 None:intergenic 45.0%
TCCAGGTAAGTGTGACTTTG+AGG - chr3_4:19736589-19736608 Msa0493790:three_prime_UTR 45.0%
ACCTCAAAGTCACACTTACC+TGG + chr3_4:19736593-19736612 None:intergenic 45.0%
! ACCGTGGTTCTCTTCCTTTT+GGG - chr3_4:19736657-19736676 Msa0493790:three_prime_UTR 45.0%
TGTTGAGATGGGAATGGATG+AGG - chr3_4:19736973-19736992 Msa0493790:intron 45.0%
TCGAACACACAACCTTCTGA+CGG + chr3_4:19737317-19737336 None:intergenic 45.0%
! AGCTTAACCACGGTGCCAAT+TGG + chr3_4:19736365-19736384 None:intergenic 50.0%
!! GTGGAAGAGCTTTGAGCTCT+TGG + chr3_4:19736497-19736516 None:intergenic 50.0%
AGGAAGAGAACCACGGTCAT+TGG + chr3_4:19736654-19736673 None:intergenic 50.0%
! GACCGTGGTTCTCTTCCTTT+TGG - chr3_4:19736656-19736675 Msa0493790:three_prime_UTR 50.0%
CCCCAAAAGGAAGAGAACCA+CGG + chr3_4:19736661-19736680 None:intergenic 50.0%
! CCGTGGTTCTCTTCCTTTTG+GGG - chr3_4:19736658-19736677 Msa0493790:three_prime_UTR 50.0%
!! AAAGCAGGACTAGCCCCAAA+AGG + chr3_4:19736674-19736693 None:intergenic 50.0%
!!! TTTGGGGCTAGTCCTGCTTT+TGG - chr3_4:19736674-19736693 Msa0493790:three_prime_UTR 50.0%
!!! TTGGGGCTAGTCCTGCTTTT+GGG - chr3_4:19736675-19736694 Msa0493790:three_prime_UTR 50.0%
!!! TTTGGGGCTAGTCCTGCTTT+TGG - chr3_4:19736674-19736693 Msa0493790:three_prime_UTR 50.0%
!!! TTGGGGCTAGTCCTGCTTTT+GGG - chr3_4:19736675-19736694 Msa0493790:three_prime_UTR 50.0%
!!! CTGCTTTTGGGGCTGCTTTT+GGG - chr3_4:19736705-19736724 Msa0493790:three_prime_UTR 50.0%
!!! TGCTTTTGGGGCTGCTTTTG+GGG - chr3_4:19736706-19736725 Msa0493790:three_prime_UTR 50.0%
!!! TTTGGGGCTAGTCCTGCTTT+TGG - chr3_4:19736674-19736693 Msa0493790:three_prime_UTR 50.0%
!!! TTGGGGCTAGTCCTGCTTTT+GGG - chr3_4:19736675-19736694 Msa0493790:three_prime_UTR 50.0%
GGCTTCTCTGCAATCCAAGA+TGG - chr3_4:19737101-19737120 Msa0493790:CDS 50.0%
CGAACACACAACCTTCTGAC+GGG + chr3_4:19737316-19737335 None:intergenic 50.0%
!! GACCCAAAGAGCACTTACAG+AGG + chr3_4:19737387-19737406 None:intergenic 50.0%
CTGTAAGTGCTCTTTGGGTC+CGG - chr3_4:19737387-19737406 Msa0493790:CDS 50.0%
! AGTTTAGGTGGATTCGGCTC+CGG + chr3_4:19737438-19737457 None:intergenic 50.0%
! AGCTTAACCACGGTGCCAAT+TGG + chr3_4:19736365-19736384 None:intergenic 50.0%
!! GTGGAAGAGCTTTGAGCTCT+TGG + chr3_4:19736497-19736516 None:intergenic 50.0%
AGGAAGAGAACCACGGTCAT+TGG + chr3_4:19736654-19736673 None:intergenic 50.0%
! GACCGTGGTTCTCTTCCTTT+TGG - chr3_4:19736656-19736675 Msa0493790:three_prime_UTR 50.0%
CCCCAAAAGGAAGAGAACCA+CGG + chr3_4:19736661-19736680 None:intergenic 50.0%
! CCGTGGTTCTCTTCCTTTTG+GGG - chr3_4:19736658-19736677 Msa0493790:three_prime_UTR 50.0%
!! AAAGCAGGACTAGCCCCAAA+AGG + chr3_4:19736674-19736693 None:intergenic 50.0%
!!! TTTGGGGCTAGTCCTGCTTT+TGG - chr3_4:19736674-19736693 Msa0493790:three_prime_UTR 50.0%
!!! TTGGGGCTAGTCCTGCTTTT+GGG - chr3_4:19736675-19736694 Msa0493790:three_prime_UTR 50.0%
!!! TTTGGGGCTAGTCCTGCTTT+TGG - chr3_4:19736674-19736693 Msa0493790:three_prime_UTR 50.0%
!!! TTGGGGCTAGTCCTGCTTTT+GGG - chr3_4:19736675-19736694 Msa0493790:three_prime_UTR 50.0%
!!! CTGCTTTTGGGGCTGCTTTT+GGG - chr3_4:19736705-19736724 Msa0493790:three_prime_UTR 50.0%
!!! TGCTTTTGGGGCTGCTTTTG+GGG - chr3_4:19736706-19736725 Msa0493790:three_prime_UTR 50.0%
!!! TTTGGGGCTAGTCCTGCTTT+TGG - chr3_4:19736674-19736693 Msa0493790:three_prime_UTR 50.0%
!!! TTGGGGCTAGTCCTGCTTTT+GGG - chr3_4:19736675-19736694 Msa0493790:three_prime_UTR 50.0%
GGCTTCTCTGCAATCCAAGA+TGG - chr3_4:19737101-19737120 Msa0493790:CDS 50.0%
CGAACACACAACCTTCTGAC+GGG + chr3_4:19737316-19737335 None:intergenic 50.0%
!! GACCCAAAGAGCACTTACAG+AGG + chr3_4:19737387-19737406 None:intergenic 50.0%
CTGTAAGTGCTCTTTGGGTC+CGG - chr3_4:19737387-19737406 Msa0493790:CDS 50.0%
! AGTTTAGGTGGATTCGGCTC+CGG + chr3_4:19737438-19737457 None:intergenic 50.0%
ATGCTTGCCAATTGGCACCG+TGG - chr3_4:19736355-19736374 Msa0493790:three_prime_UTR 55.0%
ACACCACTCGTTGTACTGCC+AGG - chr3_4:19736624-19736643 Msa0493790:three_prime_UTR 55.0%
AGACCTGGCAGTACAACGAG+TGG + chr3_4:19736630-19736649 None:intergenic 55.0%
!!! TGGGGCTAGTCCTGCTTTTG+GGG - chr3_4:19736676-19736695 Msa0493790:three_prime_UTR 55.0%
!!! TGGGGCTAGTCCTGCTTTTG+GGG - chr3_4:19736676-19736695 Msa0493790:three_prime_UTR 55.0%
CCAAAAGCAGCCCCAAAAGC+AGG + chr3_4:19736707-19736726 None:intergenic 55.0%
!!! CCTGCTTTTGGGGCTGCTTT+TGG - chr3_4:19736704-19736723 Msa0493790:three_prime_UTR 55.0%
!!! TGGGGCTAGTCCTGCTTTTG+GGG - chr3_4:19736676-19736695 Msa0493790:three_prime_UTR 55.0%
!! ACTGGACTAGCCCCAAAAGC+AGG + chr3_4:19736737-19736756 None:intergenic 55.0%
CACAACCTTCTGACGGGAAG+TGG + chr3_4:19737310-19737329 None:intergenic 55.0%
TAAGTGCTCTTTGGGTCCGG+AGG - chr3_4:19737390-19737409 Msa0493790:CDS 55.0%
ATGCTTGCCAATTGGCACCG+TGG - chr3_4:19736355-19736374 Msa0493790:three_prime_UTR 55.0%
ACACCACTCGTTGTACTGCC+AGG - chr3_4:19736624-19736643 Msa0493790:three_prime_UTR 55.0%
AGACCTGGCAGTACAACGAG+TGG + chr3_4:19736630-19736649 None:intergenic 55.0%
!!! TGGGGCTAGTCCTGCTTTTG+GGG - chr3_4:19736676-19736695 Msa0493790:three_prime_UTR 55.0%
!!! TGGGGCTAGTCCTGCTTTTG+GGG - chr3_4:19736676-19736695 Msa0493790:three_prime_UTR 55.0%
CCAAAAGCAGCCCCAAAAGC+AGG + chr3_4:19736707-19736726 None:intergenic 55.0%
!!! CCTGCTTTTGGGGCTGCTTT+TGG - chr3_4:19736704-19736723 Msa0493790:three_prime_UTR 55.0%
!!! TGGGGCTAGTCCTGCTTTTG+GGG - chr3_4:19736676-19736695 Msa0493790:three_prime_UTR 55.0%
!! ACTGGACTAGCCCCAAAAGC+AGG + chr3_4:19736737-19736756 None:intergenic 55.0%
CACAACCTTCTGACGGGAAG+TGG + chr3_4:19737310-19737329 None:intergenic 55.0%
TAAGTGCTCTTTGGGTCCGG+AGG - chr3_4:19737390-19737409 Msa0493790:CDS 55.0%
ACCACGGTCATTGGCAGACC+TGG + chr3_4:19736645-19736664 None:intergenic 60.0%
!! GCAGGACTAGCCCCAAAAGC+AGG + chr3_4:19736689-19736708 None:intergenic 60.0%
TGCCGATGTGAGGACGGTGT+TGG - chr3_4:19737344-19737363 Msa0493790:CDS 60.0%
CGCCAACACCGTCCTCACAT+CGG + chr3_4:19737349-19737368 None:intergenic 60.0%
! CGATGTGAGGACGGTGTTGG+CGG - chr3_4:19737347-19737366 Msa0493790:CDS 60.0%
!! GATGTGAGGACGGTGTTGGC+GGG - chr3_4:19737348-19737367 Msa0493790:CDS 60.0%
ACCACGGTCATTGGCAGACC+TGG + chr3_4:19736645-19736664 None:intergenic 60.0%
!! GCAGGACTAGCCCCAAAAGC+AGG + chr3_4:19736689-19736708 None:intergenic 60.0%
TGCCGATGTGAGGACGGTGT+TGG - chr3_4:19737344-19737363 Msa0493790:CDS 60.0%
CGCCAACACCGTCCTCACAT+CGG + chr3_4:19737349-19737368 None:intergenic 60.0%
! CGATGTGAGGACGGTGTTGG+CGG - chr3_4:19737347-19737366 Msa0493790:CDS 60.0%
!! GATGTGAGGACGGTGTTGGC+GGG - chr3_4:19737348-19737367 Msa0493790:CDS 60.0%
GCCAGGTCTGCCAATGACCG+TGG - chr3_4:19736641-19736660 Msa0493790:three_prime_UTR 65.0%
ACGGGCCACTTCCCGTCAGA+AGG - chr3_4:19737302-19737321 Msa0493790:CDS 65.0%
CGATTCCCGCTGCCGATGTG+AGG - chr3_4:19737334-19737353 Msa0493790:CDS 65.0%
TCCCGCTGCCGATGTGAGGA+CGG - chr3_4:19737338-19737357 Msa0493790:CDS 65.0%
ACCGTCCTCACATCGGCAGC+GGG + chr3_4:19737342-19737361 None:intergenic 65.0%
CACCGTCCTCACATCGGCAG+CGG + chr3_4:19737343-19737362 None:intergenic 65.0%
GTCACCACCAGGGTCAGGAC+AGG + chr3_4:19737416-19737435 None:intergenic 65.0%
! GTCCTGACCCTGGTGGTGAC+CGG - chr3_4:19737416-19737435 Msa0493790:CDS 65.0%
TTCGGCTCCGGTCACCACCA+GGG + chr3_4:19737426-19737445 None:intergenic 65.0%
ATTCGGCTCCGGTCACCACC+AGG + chr3_4:19737427-19737446 None:intergenic 65.0%
GCCAGGTCTGCCAATGACCG+TGG - chr3_4:19736641-19736660 Msa0493790:three_prime_UTR 65.0%
ACGGGCCACTTCCCGTCAGA+AGG - chr3_4:19737302-19737321 Msa0493790:CDS 65.0%
CGATTCCCGCTGCCGATGTG+AGG - chr3_4:19737334-19737353 Msa0493790:CDS 65.0%
TCCCGCTGCCGATGTGAGGA+CGG - chr3_4:19737338-19737357 Msa0493790:CDS 65.0%
ACCGTCCTCACATCGGCAGC+GGG + chr3_4:19737342-19737361 None:intergenic 65.0%
CACCGTCCTCACATCGGCAG+CGG + chr3_4:19737343-19737362 None:intergenic 65.0%
GTCACCACCAGGGTCAGGAC+AGG + chr3_4:19737416-19737435 None:intergenic 65.0%
! GTCCTGACCCTGGTGGTGAC+CGG - chr3_4:19737416-19737435 Msa0493790:CDS 65.0%
TTCGGCTCCGGTCACCACCA+GGG + chr3_4:19737426-19737445 None:intergenic 65.0%
ATTCGGCTCCGGTCACCACC+AGG + chr3_4:19737427-19737446 None:intergenic 65.0%
CCAGGGTCAGGACAGGCCTC+CGG + chr3_4:19737409-19737428 None:intergenic 70.0%
GAGGCCTGTCCTGACCCTGG+TGG - chr3_4:19737409-19737428 Msa0493790:CDS 70.0%
CTCCGGTCACCACCAGGGTC+AGG + chr3_4:19737421-19737440 None:intergenic 70.0%
CCAGGGTCAGGACAGGCCTC+CGG + chr3_4:19737409-19737428 None:intergenic 70.0%
GAGGCCTGTCCTGACCCTGG+TGG - chr3_4:19737409-19737428 Msa0493790:CDS 70.0%
CTCCGGTCACCACCAGGGTC+AGG + chr3_4:19737421-19737440 None:intergenic 70.0%
CCGGAGGCCTGTCCTGACCC+TGG - chr3_4:19737406-19737425 Msa0493790:CDS 75.0%
CCGGAGGCCTGTCCTGACCC+TGG - chr3_4:19737406-19737425 Msa0493790:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 19736236 19737760 19736236 ID=Msa0493790;Name=Msa0493790
chr3_4 mRNA 19736236 19737760 19736236 ID=Msa0493790-mRNA-1;Parent=Msa0493790;Name=Msa0493790-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|1|0.5|1|1|1|2|602|277
chr3_4 exon 19736236 19736912 19736236 ID=Msa0493790-mRNA-1:exon:5292;Parent=Msa0493790-mRNA-1
chr3_4 exon 19737002 19737760 19737002 ID=Msa0493790-mRNA-1:exon:5291;Parent=Msa0493790-mRNA-1
chr3_4 CDS 19737002 19737760 19737002 ID=Msa0493790-mRNA-1:cds;Parent=Msa0493790-mRNA-1
chr3_4 CDS 19736838 19736912 19736838 ID=Msa0493790-mRNA-1:cds;Parent=Msa0493790-mRNA-1
chr3_4 three_prime_UTR 19736236 19736837 19736236 ID=Msa0493790-mRNA-1:three_prime_utr;Parent=Msa0493790-mRNA-1
Gene Sequence

>Msa0493790

ATGTCTTCTTCTTCTTCTACCACCAAAGTGTCACTGAAACTTCTTATAGATACAAAGAATGAGAGAGTTCTCTTTGCTGAAGCTTCAAAATCTGTAATAGACTTTCTGTTCAATTTGCTATGCTTGCCAATTGGCACCGTGGTTAAGCTCCTAAGCACAAATGGAATGGTTGGTAGTTTAGGAAATCTGTATGAGAGTGTTGAAAACTTCGACCAGAGTTACATGCAACCAAACCAAACTAAGGATGTCCTGCTAAACCCAAGAGCTCAAAGCTCTTCCACTGAAATCTCAGGCTTCCTTACCCAGAATGAAGACATTGATGATGAAGATGAAGGAACTAAGTTATACATGTGTCCAGGTAAGTGTGACTTTGAGGTAACAAATGATAACACCACTCGTTGTACTGCCAGGTCTGCCAATGACCGTGGTTCTCTTCCTTTTGGGGCTAGTCCTGCTTTTGGGGCTAGTCCTGCTTTTGGGGCTGCTTTTGGGGCTAGTCCTGCTTTTGGGGCTAGTCCAGTATACTGCTCGAAGACTATGAACAGTGAAGTTCGTTATGTCGGAAAAAGGAAGGTTGCTAAAAAGAGAGTTTCCGATATTAAGAGTGGGTTTGTGAAAGATGTTATCACATTTATGGTGATGGATGATTTGGTGATTCAGCCAATGTCAACCATATCAAGCATCACACTGTTGAACAAGTTCAAAGTGAAAGAGATTGAAACCTTGCAAGAAAAGGTTGTTGAGATGGGAATGGATGAGGGTATCAAGTTGCTAAAGGCTTCTCTGCAATCCAAGATGGTATTGACAAGTGTTTTCCTCAAGAAGGAAAATTGA
Protein sequence

>Msa0493790

MSSSSSTTKVSLKLLIDTKNERVLFAEASKSVIDFLFNLLCLPIGTVVKLLSTNGMVGSLGNLYESVENFDQSYMQPNQTKDVLLNPRAQSSSTEISGFLTQNEDIDDEDEGTKLYMCPGKCDFEVTNDNTTRCTARSANDRGSLPFGASPAFGASPAFGAAFGASPAFGASPVYCSKTMNSEVRYVGKRKVAKKRVSDIKSGFVKDVITFMVMDDLVIQPMSTISSITLLNKFKVKEIETLQEKVVEMGMDEGIKLLKASLQSKMVLTSVFLKKEN*