AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0117610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117610 MtrunA17_Chr1g0174761 99.742 774 2 0 1 774 1 774 0.0 1603
Msa0117610 MtrunA17_Chr7g0258331 93.299 776 49 3 1 774 1 775 0.0 1515
Msa0117610 MtrunA17_Chr4g0033151 82.581 775 129 4 1 774 1 770 0.0 1331
Msa0117610 MtrunA17_Chr3g0087501 68.608 790 225 8 7 774 34 822 0.0 1155
Msa0117610 MtrunA17_Chr4g0010751 71.561 756 209 5 24 774 440 1194 0.0 1153
Msa0117610 MtrunA17_Chr5g0397601 68.726 777 233 4 6 774 233 1007 0.0 1147
Msa0117610 MtrunA17_Chr1g0174581 67.342 790 239 8 3 774 9 797 0.0 1132
Msa0117610 MtrunA17_Chr4g0014711 65.891 774 252 8 8 774 276 1044 0.0 1062
Msa0117610 MtrunA17_Chr8g0349231 60.256 780 292 7 6 774 231 1003 0.0 999
Msa0117610 MtrunA17_Chr4g0028371 58.599 785 302 11 2 774 10 783 0.0 898
Msa0117610 MtrunA17_Chr4g0035961 55.924 785 272 12 2 774 10 732 0.0 863
Msa0117610 MtrunA17_Chr7g0247271 59.137 695 262 8 93 774 281 966 0.0 852
Msa0117610 MtrunA17_Chr4g0060191 53.351 776 318 14 18 774 288 1038 0.0 806
Msa0117610 MtrunA17_Chr6g0460791 52.294 763 317 13 32 774 274 1009 0.0 783
Msa0117610 MtrunA17_Chr6g0461151 48.231 763 357 13 30 774 284 1026 0.0 736
Msa0117610 MtrunA17_Chr1g0151051 48.590 780 369 13 12 774 34 798 0.0 697
Msa0117610 MtrunA17_Chr5g0447321 41.026 780 424 12 8 774 7 763 0.0 593
Msa0117610 MtrunA17_Chr4g0010641 67.692 130 40 1 644 773 1 128 4.83e-54 182
Msa0117610 MtrunA17_Chr4g0010701 50.962 104 29 1 647 750 16 97 2.66e-25 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117610 AT3G57880.4 91.473 774 65 1 1 774 1 773 0.0 1490
Msa0117610 AT3G57880.2 91.473 774 65 1 1 774 1 773 0.0 1490
Msa0117610 AT3G57880.3 91.473 774 65 1 1 774 1 773 0.0 1490
Msa0117610 AT3G57880.1 91.473 774 65 1 1 774 1 773 0.0 1490
Msa0117610 AT1G51570.1 88.531 776 87 2 1 774 1 776 0.0 1442
Msa0117610 AT5G12970.1 81.419 775 137 4 1 774 1 769 0.0 1312
Msa0117610 AT5G06850.1 68.662 785 228 8 7 774 11 794 0.0 1156
Msa0117610 AT4G11610.2 67.224 778 242 5 6 774 234 1007 0.0 1127
Msa0117610 AT4G11610.1 67.224 778 242 5 6 774 238 1011 0.0 1127
Msa0117610 AT4G11610.3 67.224 778 242 5 6 774 101 874 0.0 1127
Msa0117610 AT5G48060.1 65.897 780 252 8 7 774 259 1036 0.0 1103
Msa0117610 AT1G22610.1 65.949 790 248 9 1 774 245 1029 0.0 1077
Msa0117610 AT4G00700.1 59.079 782 305 6 6 774 227 1006 0.0 966
Msa0117610 AT4G00700.2 59.079 782 305 6 6 774 227 1006 0.0 966
Msa0117610 AT3G61300.1 58.869 778 291 13 4 774 217 972 0.0 944
Msa0117610 AT1G04150.1 58.354 790 288 14 8 774 241 1012 0.0 926
Msa0117610 AT4G20080.1 58.161 772 305 11 9 774 15 774 0.0 920
Msa0117610 AT1G74720.1 52.506 798 341 13 2 774 297 1081 0.0 823
Msa0117610 AT3G03680.1 52.734 768 314 15 32 774 274 1017 0.0 782
Msa0117610 AT5G17980.1 48.810 756 356 12 30 774 314 1049 0.0 749
Msa0117610 AT5G03435.1 40.927 777 402 25 7 768 6 740 4.18e-168 503
Msa0117610 AT3G61720.1 38.985 808 435 21 7 774 6 795 3.13e-167 503
Msa0117610 AT5G03435.2 43.154 577 293 17 7 574 6 556 1.17e-140 426
Msa0117610 AT5G44760.1 50.750 400 150 9 8 400 5 364 1.56e-122 376
Msa0117610 AT5G44760.1 36.496 137 38 1 540 676 364 451 7.05e-20 94.0
Msa0117610 AT1G03370.2 28.980 245 155 11 41 281 3 232 1.53e-12 71.6
Msa0117610 AT1G03370.1 28.980 245 155 11 41 281 3 232 1.67e-12 72.0

Find 218 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTCCTTTGCAGTTTA+TGG 0.091860 1_3:+38776867 Msa0117610:CDS
ACCTCTTCCTGATTGGAATT+TGG 0.179060 1_3:+38777889 Msa0117610:CDS
TGAATCAGAACTGTTGTAAT+TGG 0.188345 1_3:-38777807 None:intergenic
TCATATCTTGTTCATAATAT+TGG 0.200473 1_3:+38777827 Msa0117610:CDS
TGCGGCGCCAAAGGACTATC+TGG 0.234328 1_3:-38776412 None:intergenic
GCTTATTGTGTAGCGAAATA+TGG 0.253558 1_3:+38777180 Msa0117610:CDS
GACTAATTGCTGCGGGAAAA+TGG 0.273762 1_3:+38777757 Msa0117610:CDS
CCCAAGTGGTGTGAAGAAAA+TGG 0.290205 1_3:+38777449 Msa0117610:CDS
CTCCTAAGCTTTGGTATTTG+AGG 0.293908 1_3:+38776605 Msa0117610:CDS
CGGTGCCGCTTAATTTCTTC+AGG 0.299166 1_3:+38778285 Msa0117610:CDS
GCCAAACAGCTCTGGAAATC+TGG 0.301858 1_3:+38777075 Msa0117610:CDS
CACGGCCTTCTGACATTGTT+CGG 0.307253 1_3:+38778021 Msa0117610:CDS
AGAAGGTGGTTATCATGTTT+TGG 0.311177 1_3:+38777014 Msa0117610:CDS
GCATCCGAGTGCCAAGCTTC+TGG 0.322766 1_3:-38776526 None:intergenic
CACATGAGGGTTTGTCTAGA+AGG 0.326790 1_3:+38776997 Msa0117610:CDS
TAGAAAGGGTGATAAGGTTA+AGG 0.328443 1_3:+38776453 Msa0117610:CDS
CCCAATACTTCTTCTTTGTT+CGG 0.334931 1_3:-38776838 None:intergenic
TTTCTCCAAGGATCGGCTTC+AGG 0.340930 1_3:+38776288 Msa0117610:CDS
TTGGAATTTGGCACTATAGA+TGG 0.341735 1_3:+38777901 Msa0117610:CDS
CAAGGATCGGCTTCAGGCCT+CGG 0.347948 1_3:+38776294 Msa0117610:CDS
GTGCCTTGAAAGAAAGCTTT+TGG 0.352266 1_3:+38775472 Msa0117610:five_prime_UTR
AAACCAAAAGCTTTCTTTCA+AGG 0.356098 1_3:-38775475 None:intergenic
TCCAGAGCTGTTTGGCCGTT+GGG 0.357398 1_3:-38777068 None:intergenic
CCGAACAAAGAAGAAGTATT+GGG 0.371136 1_3:+38776838 Msa0117610:CDS
TTCCTTTACCTCTTCCTGAT+TGG 0.374360 1_3:+38777882 Msa0117610:CDS
CCGATGCTCTTGCAAATATT+AGG 0.375111 1_3:+38776566 Msa0117610:CDS
GTTAAGCTCGGGAACTATAA+AGG 0.383225 1_3:+38776211 Msa0117610:CDS
TTTATTTATCTCCTAAGCTT+TGG 0.384714 1_3:+38776596 Msa0117610:CDS
TTTGCACCTCCAGCTTTGTC+AGG 0.385021 1_3:-38777336 None:intergenic
TCCTAAGCTTTGGTATTTGA+GGG 0.385923 1_3:+38776606 Msa0117610:CDS
GGCTAATTTCTTCAGAATCA+TGG 0.388398 1_3:+38777722 Msa0117610:CDS
CCTTTACGTGAGGGTTGTTA+AGG 0.393627 1_3:+38776135 Msa0117610:CDS
CAGCTCTGGAAATCTGGAAT+TGG 0.397726 1_3:+38777081 Msa0117610:CDS
GAGAGCCGAGTGTCCATGTT+AGG 0.399650 1_3:-38777939 None:intergenic
GGTTCGATCAAATTTGCAAC+TGG 0.404361 1_3:+38777778 Msa0117610:CDS
ACAAACAGTGCTGTTGCTCT+TGG 0.411446 1_3:-38778149 None:intergenic
CGTTGCTGCGGAACCATTTG+AGG 0.412932 1_3:+38776780 Msa0117610:CDS
CGAGGCCTGAAGCCGATCCT+TGG 0.414112 1_3:-38776293 None:intergenic
GCCCAACGGCCAAACAGCTC+TGG 0.415222 1_3:+38777067 Msa0117610:CDS
GGAATTGGTGTTCTTGAAGT+TGG 0.415516 1_3:+38777096 Msa0117610:CDS
TTTGAATGAGGTTCCGAAAC+GGG 0.416032 1_3:+38776384 Msa0117610:CDS
GAGAGTTAATGCTTGCTGTT+TGG 0.419766 1_3:+38776476 Msa0117610:CDS
TCGGATGCCGCGACTGTTAG+TGG 0.420415 1_3:+38776541 Msa0117610:CDS
TTGCCTTCAAAGGATGTTAC+CGG 0.421207 1_3:+38776166 Msa0117610:CDS
GGGTGTATATAGTGCATCTT+TGG 0.421466 1_3:-38777549 None:intergenic
TCTTTCAACAGAAAATCTTC+AGG 0.424219 1_3:-38776031 None:intergenic
AACTCTGAAATCAGAGATCT+AGG 0.426167 1_3:+38775500 Msa0117610:five_prime_UTR
AACCAATCCTGAATGGAATC+AGG 0.430195 1_3:+38776258 Msa0117610:CDS
AGACTTACAGCCAACTGATA+AGG 0.432910 1_3:+38776648 Msa0117610:CDS
TGTCAGAAGGCCGTGAAGTC+GGG 0.434203 1_3:-38778013 None:intergenic
GGCTGCAGTCTTTGCTGAGC+TGG 0.435790 1_3:+38778120 Msa0117610:CDS
AAAATCAGCGGCTCCTCAAA+TGG 0.439031 1_3:-38776793 None:intergenic
TTCCAGAGCTGTTTGGCCGT+TGG 0.439868 1_3:-38777069 None:intergenic
GTATAGATTGGAGGATAGAA+AGG 0.441691 1_3:+38776438 Msa0117610:CDS
TCGGCTTCAGGCCTCGGTGT+TGG 0.445911 1_3:+38776300 Msa0117610:CDS
CGCTGAGCCACCGCTGAGAA+AGG 0.446361 1_3:+38777641 Msa0117610:CDS
TCCAGATTTCCAGAGCTGTT+TGG 0.447417 1_3:-38777076 None:intergenic
AAGAAATTAAATTTGCAAGT+AGG 0.449686 1_3:+38776971 Msa0117610:CDS
AGTTGGGATATTGAGTGCTC+AGG 0.452833 1_3:+38777113 Msa0117610:CDS
CTTATTGTGTAGCGAAATAT+GGG 0.456005 1_3:+38777181 Msa0117610:CDS
GACTTACAGCCAACTGATAA+GGG 0.456275 1_3:+38776649 Msa0117610:CDS
GAATTGGTGTTCTTGAAGTT+GGG 0.456895 1_3:+38777097 Msa0117610:CDS
AGAAAGGGTGATAAGGTTAA+GGG 0.464699 1_3:+38776454 Msa0117610:CDS
GGCGCCGCAATGGTATAGAT+TGG 0.464850 1_3:+38776426 Msa0117610:CDS
TGCTGTTTGGATGGGTACAC+AGG 0.468622 1_3:+38776489 Msa0117610:CDS
TCGACACATTCCCGACTTCA+CGG 0.468689 1_3:+38778003 Msa0117610:CDS
TATAGTGCCAAATTCCAATC+AGG 0.471795 1_3:-38777896 None:intergenic
CCTTGCACTGTGATTACAAT+TGG 0.473689 1_3:+38777285 Msa0117610:CDS
AACTGATAAGGGTAGATATC+CGG 0.474666 1_3:+38776660 Msa0117610:CDS
CGAGCTGGCTAACGGTCAAC+GGG 0.475727 1_3:-38777569 None:intergenic
AACTCTTCATCAAGTTCGTC+CGG 0.476174 1_3:-38777981 None:intergenic
ATTCAAGGATTGGTAAGGTA+AGG 0.476487 1_3:+38777361 Msa0117610:CDS
GAAAATGGGTGAAATTCAAT+TGG 0.477497 1_3:+38777464 Msa0117610:CDS
ACTGTTGGTAAGATAAGTTC+AGG 0.477704 1_3:-38777858 None:intergenic
GCTTCAGGCCTCGGTGTTGG+AGG 0.478715 1_3:+38776303 Msa0117610:CDS
GGAGGATAGAAAGGGTGATA+AGG 0.479059 1_3:+38776447 Msa0117610:CDS
GCTAATTTCTTCAGAATCAT+GGG 0.479725 1_3:+38777723 Msa0117610:CDS
ACCTAGTATTCACTGGTTTG+TGG 0.480851 1_3:-38776903 None:intergenic
AACCTGATTCCATTCAGGAT+TGG 0.483996 1_3:-38776260 None:intergenic
TTCCAATCAGGAAGAGGTAA+AGG 0.484097 1_3:-38777884 None:intergenic
GGCTAAGGACTTGCCTTCAA+AGG 0.484522 1_3:+38776156 Msa0117610:CDS
CGTGAGGGTTGTTAAGGCTA+AGG 0.486394 1_3:+38776141 Msa0117610:CDS
CTGGAGGTGCAAAAGATTCA+AGG 0.487820 1_3:+38777346 Msa0117610:CDS
ATGAAGCATTTCCAGAAGCT+TGG 0.489119 1_3:+38776515 Msa0117610:CDS
TTTGAGGGTTAATGTGATTG+AGG 0.490505 1_3:+38776621 Msa0117610:CDS
CGGTCAGAAGGGCCACAACT+TGG 0.491080 1_3:-38778217 None:intergenic
GCGGCGCCAAAGGACTATCT+GGG 0.491089 1_3:-38776411 None:intergenic
GTTGTGAAGGACGACTTCAT+TGG 0.491403 1_3:+38776346 Msa0117610:CDS
ACCACAAACCAGTGAATACT+AGG 0.491540 1_3:+38776902 Msa0117610:CDS
GTTGAGTATATGCTTGATGT+TGG 0.492238 1_3:+38777669 Msa0117610:CDS
AAAGAGACCAAACCCCATCT+TGG 0.497107 1_3:+38776049 Msa0117610:CDS
CTCAACAAGGTCATATGTGC+TGG 0.498939 1_3:-38776101 None:intergenic
TCCATGTTAGGAGGGTGTCT+TGG 0.501157 1_3:-38777927 None:intergenic
CAAGTTGTGGCCCTTCTGAC+CGG 0.503387 1_3:+38778218 Msa0117610:CDS
TCCGAACAAAGAAGAAGTAT+TGG 0.503767 1_3:+38776837 Msa0117610:CDS
GTTAATGCTTGCTGTTTGGA+TGG 0.505912 1_3:+38776480 Msa0117610:CDS
GGACTAGAATCTCTCTTAGC+AGG 0.511755 1_3:+38776722 Msa0117610:CDS
TCACGCTGATTCAGCTCATC+CGG 0.512085 1_3:+38777962 Msa0117610:CDS
TTAGCCAGCTCGACAGTTTG+AGG 0.514684 1_3:+38777580 Msa0117610:CDS
ATGTCAGAAGGCCGTGAAGT+CGG 0.514758 1_3:-38778014 None:intergenic
AACAGAAAATCTTCAGGCGG+TGG 0.514836 1_3:-38776025 None:intergenic
AGAAGAAAACCAATCCTGAA+TGG 0.515488 1_3:+38776251 Msa0117610:CDS
ACCCTCAAATACCAAAGCTT+AGG 0.516986 1_3:-38776607 None:intergenic
AAACGTAAATTCCGGTCAGA+AGG 0.518768 1_3:-38778229 None:intergenic
GATCGACTTAGAAGCATAGC+TGG 0.518904 1_3:+38778053 Msa0117610:CDS
CTTCCGGTAACATCCTTTGA+AGG 0.519491 1_3:-38776169 None:intergenic
GGTGCAAAAGATTCAAGGAT+TGG 0.520817 1_3:+38777351 Msa0117610:CDS
TCGAGCTGGCTAACGGTCAA+CGG 0.520943 1_3:-38777570 None:intergenic
ATGTCTCAAAACGTAAATTC+CGG 0.524528 1_3:-38778237 None:intergenic
GTTGGGATATTGAGTGCTCA+GGG 0.525396 1_3:+38777114 Msa0117610:CDS
CCTTAACAACCCTCACGTAA+AGG 0.525933 1_3:-38776135 None:intergenic
CACCACTTGGGTGAAGAACT+AGG 0.526449 1_3:-38777437 None:intergenic
TTAAACCACCTAGTATTCAC+TGG 0.527121 1_3:-38776910 None:intergenic
AGCCGAGTGTCCATGTTAGG+AGG 0.527424 1_3:-38777936 None:intergenic
TTGCATGGTCCTGACAAAGC+TGG 0.527750 1_3:+38777327 Msa0117610:CDS
GCCAAATTCCAATCAGGAAG+AGG 0.528138 1_3:-38777890 None:intergenic
CTATACCATTGCGGCGCCAA+AGG 0.532688 1_3:-38776421 None:intergenic
AGCGTACGGATCACAACTTC+CGG 0.532790 1_3:-38776185 None:intergenic
AGCATGCAATCAGTTCTTGC+AGG 0.532832 1_3:-38778314 None:intergenic
TTCCTTTGCAGTTTATGGAT+AGG 0.533408 1_3:+38776872 Msa0117610:CDS
CCAAGTGGTGTGAAGAAAAT+GGG 0.533679 1_3:+38777450 Msa0117610:CDS
ATTTGAATGAGGTTCCGAAA+CGG 0.535448 1_3:+38776383 Msa0117610:CDS
TGCAAGTAGGATTCACATGA+GGG 0.537596 1_3:+38776984 Msa0117610:CDS
TTCTTCTCATACTCCACATG+TGG 0.540825 1_3:-38777695 None:intergenic
AAGAAATTAAGCGGCACCGA+TGG 0.545420 1_3:-38778281 None:intergenic
AGAAGGGCCACAACTTGGAA+TGG 0.547838 1_3:-38778212 None:intergenic
GTAAAGAAAAGCTGAAGCAA+TGG 0.549802 1_3:-38774946 None:intergenic
GTATACATACCTTGTCAGAA+TGG 0.550693 1_3:-38775001 None:intergenic
GTGAAGAACTAGGAGTGGAT+AGG 0.551635 1_3:-38777427 None:intergenic
GCCAAGACACCCTCCTAACA+TGG 0.551812 1_3:+38777926 Msa0117610:CDS
CCGTACGCTGAAGTTAAGCT+CGG 0.557320 1_3:+38776199 Msa0117610:CDS
TGTGTGGTTTGATTTGAATG+AGG 0.557487 1_3:+38776372 Msa0117610:CDS
TGCCGCTTAATTTCTTCAGG+AGG 0.557905 1_3:+38778288 Msa0117610:CDS
GGATTTGATGTTCGTTGCTG+CGG 0.557925 1_3:+38776768 Msa0117610:CDS
TAGCGAAATATGGGCAGAAG+TGG 0.558621 1_3:+38777190 Msa0117610:CDS
AAAAGATTCAAGGATTGGTA+AGG 0.560457 1_3:+38777356 Msa0117610:CDS
CCTAATATTTGCAAGAGCAT+CGG 0.563372 1_3:-38776566 None:intergenic
AGACCAAACCCCATCTTGGA+GGG 0.563491 1_3:+38776053 Msa0117610:CDS
GAGACCAAACCCCATCTTGG+AGG 0.564193 1_3:+38776052 Msa0117610:CDS
ACGACTTCATTGGTCGTGTG+TGG 0.564266 1_3:+38776356 Msa0117610:CDS
TTTGATAATTGTCATTTGCA+TGG 0.564967 1_3:+38777312 Msa0117610:CDS
ATAGTCCTTTGGCGCCGCAA+TGG 0.565983 1_3:+38776416 Msa0117610:CDS
CTCCTATCCATAAACTGCAA+AGG 0.566217 1_3:-38776874 None:intergenic
GATGCCTCAAACTGTCGAGC+TGG 0.566280 1_3:-38777584 None:intergenic
ATTTCCAGAAGCTTGGCACT+CGG 0.566792 1_3:+38776522 Msa0117610:CDS
AAAACATATCATTGTAGAAG+GGG 0.567643 1_3:+38776939 Msa0117610:CDS
CCGAGCTTAACTTCAGCGTA+CGG 0.569596 1_3:-38776199 None:intergenic
GCCGCAATGGTATAGATTGG+AGG 0.570899 1_3:+38776429 Msa0117610:CDS
GGTGGAATGAGCAATATACT+TGG 0.572552 1_3:+38777250 Msa0117610:CDS
GGATATCTACCCTTATCAGT+TGG 0.576446 1_3:-38776658 None:intergenic
TATAGATTGGAGGATAGAAA+GGG 0.576864 1_3:+38776439 Msa0117610:CDS
TTGAGTGGACTAATTGCTGC+GGG 0.577897 1_3:+38777750 Msa0117610:CDS
CTCCTAGTTCTTCACCCAAG+TGG 0.579462 1_3:+38777435 Msa0117610:CDS
CAAACTGTCGAGCTGGCTAA+CGG 0.580833 1_3:-38777577 None:intergenic
TGTGACTCCATTCCAAGTTG+TGG 0.583105 1_3:+38778205 Msa0117610:CDS
ACTTAGCTACTCAAGGAGAA+AGG 0.584009 1_3:+38778099 Msa0117610:CDS
TTAATGCTTGCTGTTTGGAT+GGG 0.584454 1_3:+38776481 Msa0117610:CDS
AACGTAAATTCCGGTCAGAA+GGG 0.586276 1_3:-38778228 None:intergenic
ATCAAATCCTCGTTCCACAA+TGG 0.587304 1_3:-38776754 None:intergenic
ACCAAACCCCATCTTGGAGG+GGG 0.588344 1_3:+38776055 Msa0117610:CDS
TTGCAAGTAGGATTCACATG+AGG 0.591241 1_3:+38776983 Msa0117610:CDS
GGAAGCTTATGACGGAACCT+CGG 0.592244 1_3:-38778260 None:intergenic
GGCAGAAGTGGATTCGAACA+AGG 0.592797 1_3:+38777202 Msa0117610:CDS
TTGATGTTGGTTCCCACATG+TGG 0.601847 1_3:+38777682 Msa0117610:CDS
AAGAGGTAAAGGAAAACTGT+TGG 0.606111 1_3:-38777873 None:intergenic
CCAATTGTAATCACAGTGCA+AGG 0.607117 1_3:-38777285 None:intergenic
ACTACCTCCTTTCTCAGCGG+TGG 0.608379 1_3:-38777648 None:intergenic
ACCCTCCTAACATGGACACT+CGG 0.608381 1_3:+38777934 Msa0117610:CDS
GGTAGGATACAGACTGTGGT+TGG 0.612469 1_3:+38778074 Msa0117610:CDS
CGTACGCTGAAGTTAAGCTC+GGG 0.613305 1_3:+38776200 Msa0117610:CDS
GACCAAACCCCATCTTGGAG+GGG 0.614269 1_3:+38776054 Msa0117610:CDS
CGGCGCCAAAGGACTATCTG+GGG 0.614676 1_3:-38776410 None:intergenic
CTCATCCGAACAATGTCAGA+AGG 0.615248 1_3:-38778026 None:intergenic
GGAGGTTACTGTGAAAGATA+AGG 0.615500 1_3:+38776321 Msa0117610:CDS
TTCAACAGAAAATCTTCAGG+CGG 0.617196 1_3:-38776028 None:intergenic
AGAATCATGGGAGTATTGAG+TGG 0.619315 1_3:+38777735 Msa0117610:CDS
CAGCAGTGATCTTCGCCCAA+CGG 0.622948 1_3:+38777053 Msa0117610:CDS
GCCGAGTGTCCATGTTAGGA+GGG 0.626241 1_3:-38777935 None:intergenic
GAATTTGGCACTATAGATGG+AGG 0.626699 1_3:+38777904 Msa0117610:CDS
AGATGCAATACCTTTACGTG+AGG 0.626728 1_3:+38776125 Msa0117610:CDS
TTTGAGCAGCGAAAATGCAG+AGG 0.627054 1_3:+38776002 Msa0117610:intron
ATGAGGGTTTGTCTAGAAGG+TGG 0.627125 1_3:+38777000 Msa0117610:CDS
GTGGAATGAGCAATATACTT+GGG 0.627653 1_3:+38777251 Msa0117610:CDS
CTTGGGTGAAGAACTAGGAG+TGG 0.630605 1_3:-38777432 None:intergenic
TGAGCCACCGCTGAGAAAGG+AGG 0.630758 1_3:+38777644 Msa0117610:CDS
GACTTAGAAGCATAGCTGGT+AGG 0.632636 1_3:+38778057 Msa0117610:CDS
GGTATTGCATCTGCTCAACA+AGG 0.633340 1_3:-38776114 None:intergenic
TAGTGCATCTTTGGCAACAG+AGG 0.634644 1_3:-38777540 None:intergenic
GATGCAATACCTTTACGTGA+GGG 0.638362 1_3:+38776126 Msa0117610:CDS
AACTCAGCTCCATTCTGACA+AGG 0.642851 1_3:+38774992 Msa0117610:five_prime_UTR
GTTCCGTCATAAGCTTCCAT+CGG 0.642868 1_3:+38778265 Msa0117610:CDS
TTGATAGCTTTATGCCGAGG+TGG 0.644610 1_3:+38777232 Msa0117610:CDS
TCCTCCAATCTATACCATTG+CGG 0.645041 1_3:-38776430 None:intergenic
GAATGAGCAATATACTTGGG+AGG 0.645094 1_3:+38777254 Msa0117610:CDS
GAAAGATAAGGATGTTGTGA+AGG 0.645624 1_3:+38776333 Msa0117610:CDS
GTTGGCGACTTAGCTACTCA+AGG 0.648005 1_3:+38778092 Msa0117610:CDS
GCAGGAGTATCAATCCATTG+TGG 0.649222 1_3:+38776740 Msa0117610:CDS
GTGGAGTATGAGAAGAAGCA+AGG 0.650662 1_3:+38777701 Msa0117610:CDS
ATCGGTTCCACTAACAGTCG+CGG 0.651678 1_3:-38776548 None:intergenic
AGCCTCCTGAAGAAATTAAG+CGG 0.651985 1_3:-38778290 None:intergenic
GTGAAATTCAATTGGCTGTG+AGG 0.654400 1_3:+38777472 Msa0117610:CDS
GCACCGATGGAAGCTTATGA+CGG 0.656076 1_3:-38778268 None:intergenic
GGAACTATAAAGGAACTACT+CGG 0.658774 1_3:+38776221 Msa0117610:CDS
ATTGAGTGGACTAATTGCTG+CGG 0.661101 1_3:+38777749 Msa0117610:CDS
CTACTCAGATAGTTTCAATG+AGG 0.663957 1_3:+38777610 Msa0117610:CDS
TCATTGATAGCTTTATGCCG+AGG 0.666881 1_3:+38777229 Msa0117610:CDS
TATCAATCCATTGTGGAACG+AGG 0.672925 1_3:+38776747 Msa0117610:CDS
GGCGCCAAAGGACTATCTGG+GGG 0.676642 1_3:-38776409 None:intergenic
CGAACAAAGAAGAAGTATTG+GGG 0.685152 1_3:+38776839 Msa0117610:CDS
TCTTCCACACTCAAAATCAG+CGG 0.687134 1_3:-38776805 None:intergenic
TCTTCTCATACTCCACATGT+GGG 0.689277 1_3:-38777694 None:intergenic
AGCTGGTAGGATACAGACTG+TGG 0.703110 1_3:+38778070 Msa0117610:CDS
ACAAAGAAGAAGTATTGGGG+AGG 0.704686 1_3:+38776842 Msa0117610:CDS
CATGGTCCTGACAAAGCTGG+AGG 0.704809 1_3:+38777330 Msa0117610:CDS
GTATATTGCTCATTCCACCT+CGG 0.716433 1_3:-38777246 None:intergenic
TCAACTACCTCCTTTCTCAG+CGG 0.739237 1_3:-38777651 None:intergenic
CACAGTAACCTCCAACACCG+AGG 0.741552 1_3:-38776311 None:intergenic
ACAAACCAGTGAATACTAGG+TGG 0.765072 1_3:+38776905 Msa0117610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTTAAATTATTAT+AGG + chr1_3:38775790-38775809 Msa0117610:intron 0.0%
!!! ATTAATTTTCACAAAATTTT+AGG + chr1_3:38775859-38775878 Msa0117610:intron 10.0%
!! AATAAAATGTAACATTTCAA+AGG - chr1_3:38775332-38775351 None:intergenic 15.0%
!! AACTAAAAAAATATACAACA+AGG - chr1_3:38775610-38775629 None:intergenic 15.0%
!!! TAGTTTAATTTTCATTTGTT+AGG + chr1_3:38775625-38775644 Msa0117610:intron 15.0%
!!! TGTTATATTGTTGTTTTTTT+AGG + chr1_3:38775917-38775936 Msa0117610:intron 15.0%
!!! TGTTTTTAGCAAATATTTCT+GGG + chr1_3:38775221-38775240 Msa0117610:intron 20.0%
!!! ATTTTTTGTTTATTACTTGC+AGG + chr1_3:38775432-38775451 Msa0117610:intron 20.0%
!! AAAAACATATCATTGTAGAA+GGG + chr1_3:38776938-38776957 Msa0117610:CDS 20.0%
!! AAGAAATTAAATTTGCAAGT+AGG + chr1_3:38776971-38776990 Msa0117610:CDS 20.0%
!! TCATATCTTGTTCATAATAT+TGG + chr1_3:38777827-38777846 Msa0117610:CDS 20.0%
! TAATGTTGAAGAAGTGAAAA+TGG - chr1_3:38775053-38775072 None:intergenic 25.0%
!!! CTGTTTTTAGCAAATATTTC+TGG + chr1_3:38775220-38775239 Msa0117610:intron 25.0%
!!! TTCACAAAATTTTAGGTGTT+TGG + chr1_3:38775866-38775885 Msa0117610:intron 25.0%
!!! AAATTTTAGGTGTTTGGATT+TGG + chr1_3:38775872-38775891 Msa0117610:intron 25.0%
! TTTATTTATCTCCTAAGCTT+TGG + chr1_3:38776596-38776615 Msa0117610:CDS 25.0%
! GAAAAACATATCATTGTAGA+AGG + chr1_3:38776937-38776956 Msa0117610:CDS 25.0%
! AAAACATATCATTGTAGAAG+GGG + chr1_3:38776939-38776958 Msa0117610:CDS 25.0%
! ATGCCAATGAAAAATAAAGA+TGG + chr1_3:38777141-38777160 Msa0117610:CDS 25.0%
! TGCCAATGAAAAATAAAGAT+GGG + chr1_3:38777142-38777161 Msa0117610:CDS 25.0%
! AATGAAAAATAAAGATGGGA+GGG + chr1_3:38777146-38777165 Msa0117610:CDS 25.0%
!! TTTGATAATTGTCATTTGCA+TGG + chr1_3:38777312-38777331 Msa0117610:CDS 25.0%
AAACCAAAAGCTTTCTTTCA+AGG - chr1_3:38775478-38775497 None:intergenic 30.0%
!! TTGAAAGAAAGCTTTTGGTT+TGG + chr1_3:38775477-38775496 Msa0117610:five_prime_UTR 30.0%
!!! TTTTTTTAGGCTTCTGAAGT+TGG + chr1_3:38775930-38775949 Msa0117610:intron 30.0%
TCTTTCAACAGAAAATCTTC+AGG - chr1_3:38776034-38776053 None:intergenic 30.0%
TATAGATTGGAGGATAGAAA+GGG + chr1_3:38776439-38776458 Msa0117610:CDS 30.0%
! AGTTTTTGTGAAGGCTATTT+TGG + chr1_3:38776684-38776703 Msa0117610:CDS 30.0%
!! GTTTTTGTGAAGGCTATTTT+GGG + chr1_3:38776685-38776704 Msa0117610:CDS 30.0%
!! TTTTTGTGAAGGCTATTTTG+GGG + chr1_3:38776686-38776705 Msa0117610:CDS 30.0%
!!! CTCCCATCTTTATTTTTCAT+TGG - chr1_3:38777147-38777166 None:intergenic 30.0%
CAATGAAAAATAAAGATGGG+AGG + chr1_3:38777145-38777164 Msa0117610:CDS 30.0%
ATGAAAAATAAAGATGGGAG+GGG + chr1_3:38777147-38777166 Msa0117610:CDS 30.0%
CTTATTGTGTAGCGAAATAT+GGG + chr1_3:38777181-38777200 Msa0117610:CDS 30.0%
! AAAAGATTCAAGGATTGGTA+AGG + chr1_3:38777356-38777375 Msa0117610:CDS 30.0%
GAAAATGGGTGAAATTCAAT+TGG + chr1_3:38777464-38777483 Msa0117610:CDS 30.0%
GCTAATTTCTTCAGAATCAT+GGG + chr1_3:38777723-38777742 Msa0117610:CDS 30.0%
TGAATCAGAACTGTTGTAAT+TGG - chr1_3:38777810-38777829 None:intergenic 30.0%
ATGTCTCAAAACGTAAATTC+CGG - chr1_3:38778240-38778259 None:intergenic 30.0%
GTAAAGAAAAGCTGAAGCAA+TGG - chr1_3:38774949-38774968 None:intergenic 35.0%
GTATACATACCTTGTCAGAA+TGG - chr1_3:38775004-38775023 None:intergenic 35.0%
! TGAAAATGGTGAAGGTGTAA+AGG - chr1_3:38775039-38775058 None:intergenic 35.0%
TGAAGAAGTGAAAATGGTGA+AGG - chr1_3:38775047-38775066 None:intergenic 35.0%
CTGGGAAAACTTGATGAAAT+TGG + chr1_3:38775239-38775258 Msa0117610:intron 35.0%
!! AACTCTGAAATCAGAGATCT+AGG + chr1_3:38775500-38775519 Msa0117610:five_prime_UTR 35.0%
TTGGATTTGGCAACTTGTAA+TGG + chr1_3:38775885-38775904 Msa0117610:intron 35.0%
!! CAGCAACATCTTAGTTTTTC+TGG + chr1_3:38775962-38775981 Msa0117610:intron 35.0%
TTCAACAGAAAATCTTCAGG+CGG - chr1_3:38776031-38776050 None:intergenic 35.0%
GGAACTATAAAGGAACTACT+CGG + chr1_3:38776221-38776240 Msa0117610:CDS 35.0%
AGAAGAAAACCAATCCTGAA+TGG + chr1_3:38776251-38776270 Msa0117610:CDS 35.0%
! TTTTTGCTTTCTCCAAGGAT+CGG + chr1_3:38776281-38776300 Msa0117610:CDS 35.0%
GAAAGATAAGGATGTTGTGA+AGG + chr1_3:38776333-38776352 Msa0117610:CDS 35.0%
!! TGTGTGGTTTGATTTGAATG+AGG + chr1_3:38776372-38776391 Msa0117610:CDS 35.0%
ATTTGAATGAGGTTCCGAAA+CGG + chr1_3:38776383-38776402 Msa0117610:CDS 35.0%
GTATAGATTGGAGGATAGAA+AGG + chr1_3:38776438-38776457 Msa0117610:CDS 35.0%
TAGAAAGGGTGATAAGGTTA+AGG + chr1_3:38776453-38776472 Msa0117610:CDS 35.0%
AGAAAGGGTGATAAGGTTAA+GGG + chr1_3:38776454-38776473 Msa0117610:CDS 35.0%
!! TTAATGCTTGCTGTTTGGAT+GGG + chr1_3:38776481-38776500 Msa0117610:CDS 35.0%
! CCTAATATTTGCAAGAGCAT+CGG - chr1_3:38776569-38776588 None:intergenic 35.0%
! TCCTAAGCTTTGGTATTTGA+GGG + chr1_3:38776606-38776625 Msa0117610:CDS 35.0%
TTTGAGGGTTAATGTGATTG+AGG + chr1_3:38776621-38776640 Msa0117610:CDS 35.0%
AACTGATAAGGGTAGATATC+CGG + chr1_3:38776660-38776679 Msa0117610:CDS 35.0%
! ATATCCGGAAGTTTTTGTGA+AGG + chr1_3:38776675-38776694 Msa0117610:CDS 35.0%
ATAGCCTTCACAAAAACTTC+CGG - chr1_3:38776682-38776701 None:intergenic 35.0%
! TCCGAACAAAGAAGAAGTAT+TGG + chr1_3:38776837-38776856 Msa0117610:CDS 35.0%
CCCAATACTTCTTCTTTGTT+CGG - chr1_3:38776841-38776860 None:intergenic 35.0%
!! CCGAACAAAGAAGAAGTATT+GGG + chr1_3:38776838-38776857 Msa0117610:CDS 35.0%
!! CGAACAAAGAAGAAGTATTG+GGG + chr1_3:38776839-38776858 Msa0117610:CDS 35.0%
TGCAATTCCTTTGCAGTTTA+TGG + chr1_3:38776867-38776886 Msa0117610:CDS 35.0%
TTCCTTTGCAGTTTATGGAT+AGG + chr1_3:38776872-38776891 Msa0117610:CDS 35.0%
TTAAACCACCTAGTATTCAC+TGG - chr1_3:38776913-38776932 None:intergenic 35.0%
! AGAAGGTGGTTATCATGTTT+TGG + chr1_3:38777014-38777033 Msa0117610:CDS 35.0%
! GAATTGGTGTTCTTGAAGTT+GGG + chr1_3:38777097-38777116 Msa0117610:CDS 35.0%
TGAAAAATAAAGATGGGAGG+GGG + chr1_3:38777148-38777167 Msa0117610:CDS 35.0%
GCTTATTGTGTAGCGAAATA+TGG + chr1_3:38777180-38777199 Msa0117610:CDS 35.0%
GTGGAATGAGCAATATACTT+GGG + chr1_3:38777251-38777270 Msa0117610:CDS 35.0%
! ATTCAAGGATTGGTAAGGTA+AGG + chr1_3:38777361-38777380 Msa0117610:CDS 35.0%
CTACTCAGATAGTTTCAATG+AGG + chr1_3:38777610-38777629 Msa0117610:CDS 35.0%
GTTGAGTATATGCTTGATGT+TGG + chr1_3:38777669-38777688 Msa0117610:CDS 35.0%
GGCTAATTTCTTCAGAATCA+TGG + chr1_3:38777722-38777741 Msa0117610:CDS 35.0%
! ACTGTTGGTAAGATAAGTTC+AGG - chr1_3:38777861-38777880 None:intergenic 35.0%
AAGAGGTAAAGGAAAACTGT+TGG - chr1_3:38777876-38777895 None:intergenic 35.0%
TATAGTGCCAAATTCCAATC+AGG - chr1_3:38777899-38777918 None:intergenic 35.0%
TTGGAATTTGGCACTATAGA+TGG + chr1_3:38777901-38777920 Msa0117610:CDS 35.0%
! AATGGAGCTGAGTTCTTTTG+AGG - chr1_3:38774986-38775005 None:intergenic 40.0%
GAGTTTCTTGTGTGTGTGTT+TGG + chr1_3:38775146-38775165 Msa0117610:intron 40.0%
! GTGTGACAAGTGATAGTGTT+TGG + chr1_3:38775168-38775187 Msa0117610:intron 40.0%
! GTGCCTTGAAAGAAAGCTTT+TGG + chr1_3:38775472-38775491 Msa0117610:five_prime_UTR 40.0%
ACACTGACACTTCAGATTGT+AGG + chr1_3:38775667-38775686 Msa0117610:intron 40.0%
TCACACTTCGACATGATACT+GGG + chr1_3:38775708-38775727 Msa0117610:intron 40.0%
TATGTGTCAGGTGTTTGTGT+CGG + chr1_3:38775823-38775842 Msa0117610:intron 40.0%
AGATGCAATACCTTTACGTG+AGG + chr1_3:38776125-38776144 Msa0117610:CDS 40.0%
GATGCAATACCTTTACGTGA+GGG + chr1_3:38776126-38776145 Msa0117610:CDS 40.0%
TTGCCTTCAAAGGATGTTAC+CGG + chr1_3:38776166-38776185 Msa0117610:CDS 40.0%
GTTAAGCTCGGGAACTATAA+AGG + chr1_3:38776211-38776230 Msa0117610:CDS 40.0%
AACCAATCCTGAATGGAATC+AGG + chr1_3:38776258-38776277 Msa0117610:CDS 40.0%
AACCTGATTCCATTCAGGAT+TGG - chr1_3:38776263-38776282 None:intergenic 40.0%
GCAAAAACCTGATTCCATTC+AGG - chr1_3:38776268-38776287 None:intergenic 40.0%
! TCAGGTTTTTGCTTTCTCCA+AGG + chr1_3:38776276-38776295 Msa0117610:CDS 40.0%
GGAGGTTACTGTGAAAGATA+AGG + chr1_3:38776321-38776340 Msa0117610:CDS 40.0%
TTTGAATGAGGTTCCGAAAC+GGG + chr1_3:38776384-38776403 Msa0117610:CDS 40.0%
TCCTCCAATCTATACCATTG+CGG - chr1_3:38776433-38776452 None:intergenic 40.0%
!! GAGAGTTAATGCTTGCTGTT+TGG + chr1_3:38776476-38776495 Msa0117610:CDS 40.0%
!! GTTAATGCTTGCTGTTTGGA+TGG + chr1_3:38776480-38776499 Msa0117610:CDS 40.0%
! ATGAAGCATTTCCAGAAGCT+TGG + chr1_3:38776515-38776534 Msa0117610:CDS 40.0%
CCGATGCTCTTGCAAATATT+AGG + chr1_3:38776566-38776585 Msa0117610:CDS 40.0%
! CTCCTAAGCTTTGGTATTTG+AGG + chr1_3:38776605-38776624 Msa0117610:CDS 40.0%
ACCCTCAAATACCAAAGCTT+AGG - chr1_3:38776610-38776629 None:intergenic 40.0%
AGACTTACAGCCAACTGATA+AGG + chr1_3:38776648-38776667 Msa0117610:CDS 40.0%
GACTTACAGCCAACTGATAA+GGG + chr1_3:38776649-38776668 Msa0117610:CDS 40.0%
GGATATCTACCCTTATCAGT+TGG - chr1_3:38776661-38776680 None:intergenic 40.0%
TATCAATCCATTGTGGAACG+AGG + chr1_3:38776747-38776766 Msa0117610:CDS 40.0%
ATCAAATCCTCGTTCCACAA+TGG - chr1_3:38776757-38776776 None:intergenic 40.0%
TCTTCCACACTCAAAATCAG+CGG - chr1_3:38776808-38776827 None:intergenic 40.0%
!! ACAAAGAAGAAGTATTGGGG+AGG + chr1_3:38776842-38776861 Msa0117610:CDS 40.0%
CTCCTATCCATAAACTGCAA+AGG - chr1_3:38776877-38776896 None:intergenic 40.0%
ACCACAAACCAGTGAATACT+AGG + chr1_3:38776902-38776921 Msa0117610:CDS 40.0%
!! ACCTAGTATTCACTGGTTTG+TGG - chr1_3:38776906-38776925 None:intergenic 40.0%
ACAAACCAGTGAATACTAGG+TGG + chr1_3:38776905-38776924 Msa0117610:CDS 40.0%
TTGCAAGTAGGATTCACATG+AGG + chr1_3:38776983-38777002 Msa0117610:CDS 40.0%
TGCAAGTAGGATTCACATGA+GGG + chr1_3:38776984-38777003 Msa0117610:CDS 40.0%
! GGAATTGGTGTTCTTGAAGT+TGG + chr1_3:38777096-38777115 Msa0117610:CDS 40.0%
!! TCATTGATAGCTTTATGCCG+AGG + chr1_3:38777229-38777248 Msa0117610:CDS 40.0%
GTATATTGCTCATTCCACCT+CGG - chr1_3:38777249-38777268 None:intergenic 40.0%
GGTGGAATGAGCAATATACT+TGG + chr1_3:38777250-38777269 Msa0117610:CDS 40.0%
GAATGAGCAATATACTTGGG+AGG + chr1_3:38777254-38777273 Msa0117610:CDS 40.0%
CCAATTGTAATCACAGTGCA+AGG - chr1_3:38777288-38777307 None:intergenic 40.0%
CCTTGCACTGTGATTACAAT+TGG + chr1_3:38777285-38777304 Msa0117610:CDS 40.0%
GGTGCAAAAGATTCAAGGAT+TGG + chr1_3:38777351-38777370 Msa0117610:CDS 40.0%
! CCATTTTCTTCACACCACTT+GGG - chr1_3:38777452-38777471 None:intergenic 40.0%
CCAAGTGGTGTGAAGAAAAT+GGG + chr1_3:38777450-38777469 Msa0117610:CDS 40.0%
GTGAAATTCAATTGGCTGTG+AGG + chr1_3:38777472-38777491 Msa0117610:CDS 40.0%
GGGTGTATATAGTGCATCTT+TGG - chr1_3:38777552-38777571 None:intergenic 40.0%
TCTTCTCATACTCCACATGT+GGG - chr1_3:38777697-38777716 None:intergenic 40.0%
TTCTTCTCATACTCCACATG+TGG - chr1_3:38777698-38777717 None:intergenic 40.0%
!! AGAATCATGGGAGTATTGAG+TGG + chr1_3:38777735-38777754 Msa0117610:CDS 40.0%
!! ATTGAGTGGACTAATTGCTG+CGG + chr1_3:38777749-38777768 Msa0117610:CDS 40.0%
GGTTCGATCAAATTTGCAAC+TGG + chr1_3:38777778-38777797 Msa0117610:CDS 40.0%
TTCCTTTACCTCTTCCTGAT+TGG + chr1_3:38777882-38777901 Msa0117610:CDS 40.0%
TTCCAATCAGGAAGAGGTAA+AGG - chr1_3:38777887-38777906 None:intergenic 40.0%
ACCTCTTCCTGATTGGAATT+TGG + chr1_3:38777889-38777908 Msa0117610:CDS 40.0%
GAATTTGGCACTATAGATGG+AGG + chr1_3:38777904-38777923 Msa0117610:CDS 40.0%
AACTCTTCATCAAGTTCGTC+CGG - chr1_3:38777984-38778003 None:intergenic 40.0%
ACTTAGCTACTCAAGGAGAA+AGG + chr1_3:38778099-38778118 Msa0117610:CDS 40.0%
AACGTAAATTCCGGTCAGAA+GGG - chr1_3:38778231-38778250 None:intergenic 40.0%
AAACGTAAATTCCGGTCAGA+AGG - chr1_3:38778232-38778251 None:intergenic 40.0%
!!! TTTACGTTTTGAGACATCCG+AGG + chr1_3:38778243-38778262 Msa0117610:CDS 40.0%
AGCCTCCTGAAGAAATTAAG+CGG - chr1_3:38778293-38778312 None:intergenic 40.0%
AACTCAGCTCCATTCTGACA+AGG + chr1_3:38774992-38775011 Msa0117610:five_prime_UTR 45.0%
TCAGATTGTAGGTGTGTGTC+CGG + chr1_3:38775678-38775697 Msa0117610:intron 45.0%
GTCACACTTCGACATGATAC+TGG + chr1_3:38775707-38775726 Msa0117610:intron 45.0%
GGTGTCTACATGTATGTGTC+AGG + chr1_3:38775811-38775830 Msa0117610:intron 45.0%
TTTGAGCAGCGAAAATGCAG+AGG + chr1_3:38776002-38776021 Msa0117610:intron 45.0%
AACAGAAAATCTTCAGGCGG+TGG - chr1_3:38776028-38776047 None:intergenic 45.0%
AAAGAGACCAAACCCCATCT+TGG + chr1_3:38776049-38776068 Msa0117610:CDS 45.0%
! ATTTTTCCCCCTCCAAGATG+GGG - chr1_3:38776064-38776083 None:intergenic 45.0%
! GATTTTTCCCCCTCCAAGAT+GGG - chr1_3:38776065-38776084 None:intergenic 45.0%
! AGATTTTTCCCCCTCCAAGA+TGG - chr1_3:38776066-38776085 None:intergenic 45.0%
CTCAACAAGGTCATATGTGC+TGG - chr1_3:38776104-38776123 None:intergenic 45.0%
GGTATTGCATCTGCTCAACA+AGG - chr1_3:38776117-38776136 None:intergenic 45.0%
CCTTAACAACCCTCACGTAA+AGG - chr1_3:38776138-38776157 None:intergenic 45.0%
CCTTTACGTGAGGGTTGTTA+AGG + chr1_3:38776135-38776154 Msa0117610:CDS 45.0%
CTTCCGGTAACATCCTTTGA+AGG - chr1_3:38776172-38776191 None:intergenic 45.0%
GTTGTGAAGGACGACTTCAT+TGG + chr1_3:38776346-38776365 Msa0117610:CDS 45.0%
GGAGGATAGAAAGGGTGATA+AGG + chr1_3:38776447-38776466 Msa0117610:CDS 45.0%
ATTTCCAGAAGCTTGGCACT+CGG + chr1_3:38776522-38776541 Msa0117610:CDS 45.0%
!! GAAGGCTATTTTGGGGAATC+AGG + chr1_3:38776693-38776712 Msa0117610:CDS 45.0%
!! TTTTGGGGAATCAGGCATTG+AGG + chr1_3:38776701-38776720 Msa0117610:CDS 45.0%
GGACTAGAATCTCTCTTAGC+AGG + chr1_3:38776722-38776741 Msa0117610:CDS 45.0%
!! GCAGGAGTATCAATCCATTG+TGG + chr1_3:38776740-38776759 Msa0117610:CDS 45.0%
GGATTTGATGTTCGTTGCTG+CGG + chr1_3:38776768-38776787 Msa0117610:CDS 45.0%
AAAATCAGCGGCTCCTCAAA+TGG - chr1_3:38776796-38776815 None:intergenic 45.0%
CACATGAGGGTTTGTCTAGA+AGG + chr1_3:38776997-38777016 Msa0117610:CDS 45.0%
ATGAGGGTTTGTCTAGAAGG+TGG + chr1_3:38777000-38777019 Msa0117610:CDS 45.0%
TCCAGATTTCCAGAGCTGTT+TGG - chr1_3:38777079-38777098 None:intergenic 45.0%
!! CAGCTCTGGAAATCTGGAAT+TGG + chr1_3:38777081-38777100 Msa0117610:CDS 45.0%
AGTTGGGATATTGAGTGCTC+AGG + chr1_3:38777113-38777132 Msa0117610:CDS 45.0%
GTTGGGATATTGAGTGCTCA+GGG + chr1_3:38777114-38777133 Msa0117610:CDS 45.0%
TAGCGAAATATGGGCAGAAG+TGG + chr1_3:38777190-38777209 Msa0117610:CDS 45.0%
!! TTGATAGCTTTATGCCGAGG+TGG + chr1_3:38777232-38777251 Msa0117610:CDS 45.0%
! CTGGAGGTGCAAAAGATTCA+AGG + chr1_3:38777346-38777365 Msa0117610:CDS 45.0%
GTGAAGAACTAGGAGTGGAT+AGG - chr1_3:38777430-38777449 None:intergenic 45.0%
CCCAAGTGGTGTGAAGAAAA+TGG + chr1_3:38777449-38777468 Msa0117610:CDS 45.0%
! CCCATTTTCTTCACACCACT+TGG - chr1_3:38777453-38777472 None:intergenic 45.0%
TAGTGCATCTTTGGCAACAG+AGG - chr1_3:38777543-38777562 None:intergenic 45.0%
TCAACTACCTCCTTTCTCAG+CGG - chr1_3:38777654-38777673 None:intergenic 45.0%
!! TTGATGTTGGTTCCCACATG+TGG + chr1_3:38777682-38777701 Msa0117610:CDS 45.0%
GTGGAGTATGAGAAGAAGCA+AGG + chr1_3:38777701-38777720 Msa0117610:CDS 45.0%
!! TTGAGTGGACTAATTGCTGC+GGG + chr1_3:38777750-38777769 Msa0117610:CDS 45.0%
GACTAATTGCTGCGGGAAAA+TGG + chr1_3:38777757-38777776 Msa0117610:CDS 45.0%
GCCAAATTCCAATCAGGAAG+AGG - chr1_3:38777893-38777912 None:intergenic 45.0%
CTCATCCGAACAATGTCAGA+AGG - chr1_3:38778029-38778048 None:intergenic 45.0%
! GATCGACTTAGAAGCATAGC+TGG + chr1_3:38778053-38778072 Msa0117610:CDS 45.0%
! GACTTAGAAGCATAGCTGGT+AGG + chr1_3:38778057-38778076 Msa0117610:CDS 45.0%
! ACAAACAGTGCTGTTGCTCT+TGG - chr1_3:38778152-38778171 None:intergenic 45.0%
TGTGACTCCATTCCAAGTTG+TGG + chr1_3:38778205-38778224 Msa0117610:CDS 45.0%
GTTCCGTCATAAGCTTCCAT+CGG + chr1_3:38778265-38778284 Msa0117610:CDS 45.0%
! AAGAAATTAAGCGGCACCGA+TGG - chr1_3:38778284-38778303 None:intergenic 45.0%
! TGCCGCTTAATTTCTTCAGG+AGG + chr1_3:38778288-38778307 Msa0117610:CDS 45.0%
AGCATGCAATCAGTTCTTGC+AGG - chr1_3:38778317-38778336 None:intergenic 45.0%
TTGTAGGTGTGTGTCCGGTA+TGG + chr1_3:38775683-38775702 Msa0117610:intron 50.0%
GTCGAAGTGTGACACCATAC+CGG - chr1_3:38775700-38775719 None:intergenic 50.0%
AGACCAAACCCCATCTTGGA+GGG + chr1_3:38776053-38776072 Msa0117610:CDS 50.0%
CTTGGAGGGGGAAAAATCTC+TGG + chr1_3:38776067-38776086 Msa0117610:CDS 50.0%
CGTGAGGGTTGTTAAGGCTA+AGG + chr1_3:38776141-38776160 Msa0117610:CDS 50.0%
GGCTAAGGACTTGCCTTCAA+AGG + chr1_3:38776156-38776175 Msa0117610:CDS 50.0%
AGCGTACGGATCACAACTTC+CGG - chr1_3:38776188-38776207 None:intergenic 50.0%
CCGAGCTTAACTTCAGCGTA+CGG - chr1_3:38776202-38776221 None:intergenic 50.0%
CCGTACGCTGAAGTTAAGCT+CGG + chr1_3:38776199-38776218 Msa0117610:CDS 50.0%
CGTACGCTGAAGTTAAGCTC+GGG + chr1_3:38776200-38776219 Msa0117610:CDS 50.0%
! TTTCTCCAAGGATCGGCTTC+AGG + chr1_3:38776288-38776307 Msa0117610:CDS 50.0%
ACGACTTCATTGGTCGTGTG+TGG + chr1_3:38776356-38776375 Msa0117610:CDS 50.0%
GCCGCAATGGTATAGATTGG+AGG + chr1_3:38776429-38776448 Msa0117610:CDS 50.0%
! TGCTGTTTGGATGGGTACAC+AGG + chr1_3:38776489-38776508 Msa0117610:CDS 50.0%
! ATCGGTTCCACTAACAGTCG+CGG - chr1_3:38776551-38776570 None:intergenic 50.0%
!! GCCAAACAGCTCTGGAAATC+TGG + chr1_3:38777075-38777094 Msa0117610:CDS 50.0%
! GGCAGAAGTGGATTCGAACA+AGG + chr1_3:38777202-38777221 Msa0117610:CDS 50.0%
TTGCATGGTCCTGACAAAGC+TGG + chr1_3:38777327-38777346 Msa0117610:CDS 50.0%
! TTTGCACCTCCAGCTTTGTC+AGG - chr1_3:38777339-38777358 None:intergenic 50.0%
CTTGGGTGAAGAACTAGGAG+TGG - chr1_3:38777435-38777454 None:intergenic 50.0%
! CTCCTAGTTCTTCACCCAAG+TGG + chr1_3:38777435-38777454 Msa0117610:CDS 50.0%
CACCACTTGGGTGAAGAACT+AGG - chr1_3:38777440-38777459 None:intergenic 50.0%
CAAACTGTCGAGCTGGCTAA+CGG - chr1_3:38777580-38777599 None:intergenic 50.0%
TTAGCCAGCTCGACAGTTTG+AGG + chr1_3:38777580-38777599 Msa0117610:CDS 50.0%
!! TCCATGTTAGGAGGGTGTCT+TGG - chr1_3:38777930-38777949 None:intergenic 50.0%
ACCCTCCTAACATGGACACT+CGG + chr1_3:38777934-38777953 Msa0117610:CDS 50.0%
!! TCACGCTGATTCAGCTCATC+CGG + chr1_3:38777962-38777981 Msa0117610:CDS 50.0%
TCGACACATTCCCGACTTCA+CGG + chr1_3:38778003-38778022 Msa0117610:CDS 50.0%
ATGTCAGAAGGCCGTGAAGT+CGG - chr1_3:38778017-38778036 None:intergenic 50.0%
CACGGCCTTCTGACATTGTT+CGG + chr1_3:38778021-38778040 Msa0117610:CDS 50.0%
AGCTGGTAGGATACAGACTG+TGG + chr1_3:38778070-38778089 Msa0117610:CDS 50.0%
GGTAGGATACAGACTGTGGT+TGG + chr1_3:38778074-38778093 Msa0117610:CDS 50.0%
GTTGGCGACTTAGCTACTCA+AGG + chr1_3:38778092-38778111 Msa0117610:CDS 50.0%
AGAAGGGCCACAACTTGGAA+TGG - chr1_3:38778215-38778234 None:intergenic 50.0%
! GGAAGCTTATGACGGAACCT+CGG - chr1_3:38778263-38778282 None:intergenic 50.0%
! GCACCGATGGAAGCTTATGA+CGG - chr1_3:38778271-38778290 None:intergenic 50.0%
!! CGGTGCCGCTTAATTTCTTC+AGG + chr1_3:38778285-38778304 Msa0117610:CDS 50.0%
GAGACCAAACCCCATCTTGG+AGG + chr1_3:38776052-38776071 Msa0117610:CDS 55.0%
GACCAAACCCCATCTTGGAG+GGG + chr1_3:38776054-38776073 Msa0117610:CDS 55.0%
ACCAAACCCCATCTTGGAGG+GGG + chr1_3:38776055-38776074 Msa0117610:CDS 55.0%
CACAGTAACCTCCAACACCG+AGG - chr1_3:38776314-38776333 None:intergenic 55.0%
CTATCTGGGGGAACCCGTTT+CGG - chr1_3:38776400-38776419 None:intergenic 55.0%
GGTTCCCCCAGATAGTCCTT+TGG + chr1_3:38776405-38776424 Msa0117610:CDS 55.0%
ATAGTCCTTTGGCGCCGCAA+TGG + chr1_3:38776416-38776435 Msa0117610:CDS 55.0%
CTATACCATTGCGGCGCCAA+AGG - chr1_3:38776424-38776443 None:intergenic 55.0%
GGCGCCGCAATGGTATAGAT+TGG + chr1_3:38776426-38776445 Msa0117610:CDS 55.0%
CGTTGCTGCGGAACCATTTG+AGG + chr1_3:38776780-38776799 Msa0117610:CDS 55.0%
!!! GGAGCCGCTGATTTTGAGTG+TGG + chr1_3:38776801-38776820 Msa0117610:CDS 55.0%
CAGCAGTGATCTTCGCCCAA+CGG + chr1_3:38777053-38777072 Msa0117610:CDS 55.0%
TCCAGAGCTGTTTGGCCGTT+GGG - chr1_3:38777071-38777090 None:intergenic 55.0%
TTCCAGAGCTGTTTGGCCGT+TGG - chr1_3:38777072-38777091 None:intergenic 55.0%
CATGGTCCTGACAAAGCTGG+AGG + chr1_3:38777330-38777349 Msa0117610:CDS 55.0%
TCGAGCTGGCTAACGGTCAA+CGG - chr1_3:38777573-38777592 None:intergenic 55.0%
GATGCCTCAAACTGTCGAGC+TGG - chr1_3:38777587-38777606 None:intergenic 55.0%
ACTACCTCCTTTCTCAGCGG+TGG - chr1_3:38777651-38777670 None:intergenic 55.0%
GCCAAGACACCCTCCTAACA+TGG + chr1_3:38777926-38777945 Msa0117610:CDS 55.0%
GCCGAGTGTCCATGTTAGGA+GGG - chr1_3:38777938-38777957 None:intergenic 55.0%
AGCCGAGTGTCCATGTTAGG+AGG - chr1_3:38777939-38777958 None:intergenic 55.0%
GAGAGCCGAGTGTCCATGTT+AGG - chr1_3:38777942-38777961 None:intergenic 55.0%
TGTCAGAAGGCCGTGAAGTC+GGG - chr1_3:38778016-38778035 None:intergenic 55.0%
CAAGTTGTGGCCCTTCTGAC+CGG + chr1_3:38778218-38778237 Msa0117610:CDS 55.0%
TCCCCCTCCAAGATGGGGTT+TGG - chr1_3:38776059-38776078 None:intergenic 60.0%
! CAAGGATCGGCTTCAGGCCT+CGG + chr1_3:38776294-38776313 Msa0117610:CDS 60.0%
GGCGCCAAAGGACTATCTGG+GGG - chr1_3:38776412-38776431 None:intergenic 60.0%
CGGCGCCAAAGGACTATCTG+GGG - chr1_3:38776413-38776432 None:intergenic 60.0%
GCGGCGCCAAAGGACTATCT+GGG - chr1_3:38776414-38776433 None:intergenic 60.0%
TGCGGCGCCAAAGGACTATC+TGG - chr1_3:38776415-38776434 None:intergenic 60.0%
GCATCCGAGTGCCAAGCTTC+TGG - chr1_3:38776529-38776548 None:intergenic 60.0%
TCGGATGCCGCGACTGTTAG+TGG + chr1_3:38776541-38776560 Msa0117610:CDS 60.0%
CGAGCTGGCTAACGGTCAAC+GGG - chr1_3:38777572-38777591 None:intergenic 60.0%
TGAGCCACCGCTGAGAAAGG+AGG + chr1_3:38777644-38777663 Msa0117610:CDS 60.0%
GGCTGCAGTCTTTGCTGAGC+TGG + chr1_3:38778120-38778139 Msa0117610:CDS 60.0%
CGGTCAGAAGGGCCACAACT+TGG - chr1_3:38778220-38778239 None:intergenic 60.0%
CGAGGCCTGAAGCCGATCCT+TGG - chr1_3:38776296-38776315 None:intergenic 65.0%
! TCGGCTTCAGGCCTCGGTGT+TGG + chr1_3:38776300-38776319 Msa0117610:CDS 65.0%
!! GCTTCAGGCCTCGGTGTTGG+AGG + chr1_3:38776303-38776322 Msa0117610:CDS 65.0%
GCCCAACGGCCAAACAGCTC+TGG + chr1_3:38777067-38777086 Msa0117610:CDS 65.0%
CGCTGAGCCACCGCTGAGAA+AGG + chr1_3:38777641-38777660 Msa0117610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 38774895 38778340 38774895 ID=Msa0117610;Name=Msa0117610
chr1_3 mRNA 38774895 38778340 38774895 ID=Msa0117610-mRNA-1;Parent=Msa0117610;Name=Msa0117610-mRNA-1;_AED=0.07;_eAED=0.07;_QI=192|0.5|0.66|1|0.5|0.66|3|0|774
chr1_3 exon 38774895 38775013 38774895 ID=Msa0117610-mRNA-1:exon:12074;Parent=Msa0117610-mRNA-1
chr1_3 exon 38775454 38775521 38775454 ID=Msa0117610-mRNA-1:exon:12075;Parent=Msa0117610-mRNA-1
chr1_3 exon 38776011 38778340 38776011 ID=Msa0117610-mRNA-1:exon:12076;Parent=Msa0117610-mRNA-1
chr1_3 five_prime_UTR 38774895 38775013 38774895 ID=Msa0117610-mRNA-1:five_prime_utr;Parent=Msa0117610-mRNA-1
chr1_3 five_prime_UTR 38775454 38775521 38775454 ID=Msa0117610-mRNA-1:five_prime_utr;Parent=Msa0117610-mRNA-1
chr1_3 five_prime_UTR 38776011 38776015 38776011 ID=Msa0117610-mRNA-1:five_prime_utr;Parent=Msa0117610-mRNA-1
chr1_3 CDS 38776016 38778340 38776016 ID=Msa0117610-mRNA-1:cds;Parent=Msa0117610-mRNA-1
Gene Sequence

>Msa0117610

ATGCAGAGGCCACCGCCTGAAGATTTTCTGTTGAAAGAGACCAAACCCCATCTTGGAGGGGGAAAAATCTCTGGTGACAAACTAACCAGCACATATGACCTTGTTGAGCAGATGCAATACCTTTACGTGAGGGTTGTTAAGGCTAAGGACTTGCCTTCAAAGGATGTTACCGGAAGTTGTGATCCGTACGCTGAAGTTAAGCTCGGGAACTATAAAGGAACTACTCGGCATTTTGAGAAGAAAACCAATCCTGAATGGAATCAGGTTTTTGCTTTCTCCAAGGATCGGCTTCAGGCCTCGGTGTTGGAGGTTACTGTGAAAGATAAGGATGTTGTGAAGGACGACTTCATTGGTCGTGTGTGGTTTGATTTGAATGAGGTTCCGAAACGGGTTCCCCCAGATAGTCCTTTGGCGCCGCAATGGTATAGATTGGAGGATAGAAAGGGTGATAAGGTTAAGGGAGAGTTAATGCTTGCTGTTTGGATGGGTACACAGGCTGATGAAGCATTTCCAGAAGCTTGGCACTCGGATGCCGCGACTGTTAGTGGAACCGATGCTCTTGCAAATATTAGGTCGAAAGTTTATTTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATTGAGGCACAAGACTTACAGCCAACTGATAAGGGTAGATATCCGGAAGTTTTTGTGAAGGCTATTTTGGGGAATCAGGCATTGAGGACTAGAATCTCTCTTAGCAGGAGTATCAATCCATTGTGGAACGAGGATTTGATGTTCGTTGCTGCGGAACCATTTGAGGAGCCGCTGATTTTGAGTGTGGAAGACAGAGTTGCTCCGAACAAAGAAGAAGTATTGGGGAGGTGTGCAATTCCTTTGCAGTTTATGGATAGGAGACTCGACCACAAACCAGTGAATACTAGGTGGTTTAATCTTGAAAAACATATCATTGTAGAAGGGGAAAAGAAGAAAGAAATTAAATTTGCAAGTAGGATTCACATGAGGGTTTGTCTAGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACGGCCAAACAGCTCTGGAAATCTGGAATTGGTGTTCTTGAAGTTGGGATATTGAGTGCTCAGGGTTTGATGCCAATGAAAAATAAAGATGGGAGGGGGACAACTGATGCTTATTGTGTAGCGAAATATGGGCAGAAGTGGATTCGAACAAGGACAATCATTGATAGCTTTATGCCGAGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTGATTACAATTGGTGTATTTGATAATTGTCATTTGCATGGTCCTGACAAAGCTGGAGGTGCAAAAGATTCAAGGATTGGTAAGGTAAGGATTCGACTTTCGACACTCGAGACTGATCGAGTGTACACACATTCCTATCCACTCCTAGTTCTTCACCCAAGTGGTGTGAAGAAAATGGGTGAAATTCAATTGGCTGTGAGGTTCACTTGTTCTTCTTTGCTCAACATGATGCACATGTATTCACTACCTCTGTTGCCAAAGATGCACTATATACACCCGTTGACCGTTAGCCAGCTCGACAGTTTGAGGCATCAAGCTACTCAGATAGTTTCAATGAGGCTGAGTCGCGCTGAGCCACCGCTGAGAAAGGAGGTAGTTGAGTATATGCTTGATGTTGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCTAATTTCTTCAGAATCATGGGAGTATTGAGTGGACTAATTGCTGCGGGAAAATGGTTCGATCAAATTTGCAACTGGAAAAATCCAATTACAACAGTTCTGATTCATATCTTGTTCATAATATTGGTCATGTATCCTGAACTTATCTTACCAACAGTTTTCCTTTACCTCTTCCTGATTGGAATTTGGCACTATAGATGGAGGCCAAGACACCCTCCTAACATGGACACTCGGCTCTCTCACGCTGATTCAGCTCATCCGGACGAACTTGATGAAGAGTTCGACACATTCCCGACTTCACGGCCTTCTGACATTGTTCGGATGAGATATGATCGACTTAGAAGCATAGCTGGTAGGATACAGACTGTGGTTGGCGACTTAGCTACTCAAGGAGAAAGGCTGCAGTCTTTGCTGAGCTGGCGTGATCCAAGAGCAACAGCACTGTTTGTGATTTTCTGTTTGCTTGCTGCTACTATACTGTATGTGACTCCATTCCAAGTTGTGGCCCTTCTGACCGGAATTTACGTTTTGAGACATCCGAGGTTCCGTCATAAGCTTCCATCGGTGCCGCTTAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA
Protein sequence

>Msa0117610

MQRPPPEDFLLKETKPHLGGGKISGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASVLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISLSRSINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEVLGRCAIPLQFMDRRLDHKPVNTRWFNLEKHIIVEGEKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLEVGILSAQGLMPMKNKDGRGTTDAYCVAKYGQKWIRTRTIIDSFMPRWNEQYTWEVFDPCTVITIGVFDNCHLHGPDKAGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVKKMGEIQLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAAGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTVFLYLFLIGIWHYRWRPRHPPNMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLLAATILYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML*