AlfalfaGEDB | Msa0185030

M. sativa cultivar zhongmu-4 / Msa0185030

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013
PFAM: PF00168.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0185030	XP_013442123.1	99.612	773	3	0	6	778	2	774	0.0	1599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0185030	sp\|Q9M2R0\|FTIP3_ARATH	91.332	773	66	1	6	778	2	773	0.0	1487

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0185030	A0A072TGP1	99.612	773	3	0	6	778	2	774	0.0	1599

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0117610	Msa0185030	0.935761	5.099059e-97	-8.615850e-47
Msa0160930	Msa0185030	0.847115	1.418067e-59	-8.615850e-47
Msa0185030	Msa0185050	0.980700	7.917006e-151	-8.615850e-47
Msa0185030	Msa0493790	0.805119	1.556647e-49	-8.615850e-47
Msa0185030	Msa0838240	0.800192	1.617007e-48	-8.615850e-47
Msa0185030	Msa1424910	0.801306	9.581870e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0185030	MtrunA17_Chr1g0174761	99.612	773	3	0	6	778	2	774	1599
Msa0185030	MtrunA17_Chr7g0258331	93.161	775	50	3	6	778	2	775	1513
Msa0185030	MtrunA17_Chr4g0033151	82.429	774	130	4	6	778	2	770	1328
Msa0185030	MtrunA17_Chr3g0087501	68.608	790	225	8	11	778	34	822	1156
Msa0185030	MtrunA17_Chr4g0010751	71.561	756	209	5	28	778	440	1194	1153
Msa0185030	MtrunA17_Chr5g0397601	68.726	777	233	4	10	778	233	1007	1148
Msa0185030	MtrunA17_Chr1g0174581	67.128	794	242	8	3	778	5	797	1134
Msa0185030	MtrunA17_Chr4g0014711	65.478	785	258	9	1	778	266	1044	1063
Msa0185030	MtrunA17_Chr8g0349231	60.256	780	292	7	10	778	231	1003	999
Msa0185030	MtrunA17_Chr4g0028371	58.397	786	304	11	5	778	9	783	898

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0185030	AT3G57880.4	91.332	773	66	1	6	778	2	773	1487
Msa0185030	AT3G57880.2	91.332	773	66	1	6	778	2	773	1487
Msa0185030	AT3G57880.3	91.332	773	66	1	6	778	2	773	1487
Msa0185030	AT3G57880.1	91.332	773	66	1	6	778	2	773	1487
Msa0185030	AT1G51570.1	88.387	775	88	2	6	778	2	776	1440
Msa0185030	AT5G12970.1	81.877	767	133	3	12	778	9	769	1310
Msa0185030	AT5G06850.1	68.662	785	228	8	11	778	11	794	1156
Msa0185030	AT4G11610.1	67.224	778	242	5	10	778	238	1011	1128
Msa0185030	AT4G11610.2	67.224	778	242	5	10	778	234	1007	1127
Msa0185030	AT4G11610.3	67.224	778	242	5	10	778	101	874	1127

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Find 213 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATATCATTGTAGAAG+GGG	0.567643	1_4:+74871984	Msa0185030:CDS
AAAAGATTCAAGGATTGGTA+AGG	0.560457	1_4:+74872401	Msa0185030:CDS
AAAATCAGCGGCTCCTCAAA+TGG	0.439031	1_4:-74871838	None:intergenic
AAAGAGACCAAACCCCATCT+TGG	0.497107	1_4:+74871094	Msa0185030:CDS
AACAGAAAATCTTCAGGCGG+TGG	0.514836	1_4:-74871070	None:intergenic
AACCAATCCTGAATGGAATC+AGG	0.430195	1_4:+74871303	Msa0185030:CDS
AACCTGATTCCATTCAGGAT+TGG	0.483996	1_4:-74871305	None:intergenic
AACTCTTCATCAAGTTCGTC+CGG	0.476174	1_4:-74873026	None:intergenic
AACTGATAAGGGTAGATATC+CGG	0.474666	1_4:+74871705	Msa0185030:CDS
AAGAAATTAAATTTGCAAGT+AGG	0.449686	1_4:+74872016	Msa0185030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAAAGCTTTCTTTCA+AGG	-	chr1_4:74870477-74870496	None:intergenic	30.0%
TTAGATTTGGCAACTTGTAA+TGG	+	chr1_4:74870930-74870949	Msa0185030:intron	30.0%
TCTTTCAACAGAAAATCTTC+AGG	-	chr1_4:74871079-74871098	None:intergenic	30.0%
TATAGATTGGAGGATAGAAA+GGG	+	chr1_4:74871484-74871503	Msa0185030:CDS	30.0%
CAATGAAAAATAAAGATGGG+AGG	+	chr1_4:74872190-74872209	Msa0185030:CDS	30.0%
ATGAAAAATAAAGATGGGAG+GGG	+	chr1_4:74872192-74872211	Msa0185030:CDS	30.0%
CTTATTGTGTAGCGAAATAT+GGG	+	chr1_4:74872226-74872245	Msa0185030:CDS	30.0%
GAAAATGGGTGAAATTCAAT+TGG	+	chr1_4:74872509-74872528	Msa0185030:CDS	30.0%
GCTAATTTCTTCAGAATCAT+GGG	+	chr1_4:74872768-74872787	Msa0185030:CDS	30.0%
TGAATCAGAACTGTTGTAAT+TGG	-	chr1_4:74872855-74872874	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	74870304	74873385	74870304	ID=Msa0185030;Name=Msa0185030
chr1_4	mRNA	74870304	74873385	74870304	ID=Msa0185030-mRNA-1;Parent=Msa0185030;Name=Msa0185030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|778
chr1_4	exon	74870304	74870312	74870304	ID=Msa0185030-mRNA-1:exon:25504;Parent=Msa0185030-mRNA-1
chr1_4	exon	74870984	74870992	74870984	ID=Msa0185030-mRNA-1:exon:25505;Parent=Msa0185030-mRNA-1
chr1_4	exon	74871067	74873385	74871067	ID=Msa0185030-mRNA-1:exon:25506;Parent=Msa0185030-mRNA-1
chr1_4	CDS	74870304	74870312	74870304	ID=Msa0185030-mRNA-1:cds;Parent=Msa0185030-mRNA-1
chr1_4	CDS	74870984	74870992	74870984	ID=Msa0185030-mRNA-1:cds;Parent=Msa0185030-mRNA-1
chr1_4	CDS	74871067	74873385	74871067	ID=Msa0185030-mRNA-1:cds;Parent=Msa0185030-mRNA-1

Gene Sequence

>Msa0185030

ATGCTGAAAGCTTCTGAAAGGCCACCGCCTGAAGATTTTCTGTTGAAAGAGACCAAACCCCATCTTGGAGGGGGAAAAATCTCTGGTGACAAACTAACCAGCACATATGACCTTGTTGAGCAGATGCAATACCTTTACGTGAGGGTTGTTAAGGCTAAGGACTTGCCTTCAAAGGATGTTACCGGAAGTTGTGATCCGTACGCTGAAGTTAAGCTCGGGAACTATAAAGGAACTACTCGGCATTTTGAGAAGAAAACCAATCCTGAATGGAATCAGGTTTTTGCTTTCTCCAAGGATCGGCTTCAGGCCTCGGTGTTGGAGGTTACTGTGAAAGATAAGGATGTTGTGAAGGACGACTTCATTGGTCGTGTGTGGTTTGATTTGAATGAGGTTCCGAAACGGGTTCCCCCAGATAGTCCTTTGGCGCCGCAATGGTATAGATTGGAGGATAGAAAGGGTGATAAGGTTAAGGGAGAGTTAATGCTTGCTGTTTGGATGGGTACACAGGCTGATGAAGCATTTCCAGAAGCTTGGCACTCGGATGCCGCGACTGTTAGTGGAACCGATGCTCTTGCAAATATTAGGTCGAAAGTTTATTTATCTCCTAAGCTTTGGTATTTGAGGGTAAATGTGATTGAGGCACAAGACTTACAGCCAACTGATAAGGGTAGATATCCGGAAGTTTTTGTGAAGGCTATTTTGGGGAATCAGGCATTGAGGACTAGAATCTCTCTTAGCAGGAGTATCAATCCATTGTGGAACGAGGATTTGATGTTCGTTGCTGCGGAACCATTTGAGGAGCCGCTGATTTTGAGTGTGGAAGACAGAGTTGCTCCGAACAAAGAAGAAGTATTGGGGAGGTGTGCAATTCCTTTGCAGTTTATGGATAGGAGACTCGACCACAAACCAGTGAATACTAGGTGGTTTAATCTTGAAAAACATATCATTGTAGAAGGGGAAAAGAAGAAAGAAATTAAATTTGCAAGTAGGATTCACATGAGGGTTTGTCTAGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACGGCCAAACAGCTCTGGAAATCTGGAATTGGTGTTCTTGAAGTTGGGATATTGAGTGCTCAGGGTTTGATGCCAATGAAAAATAAAGATGGGAGGGGGACAACTGATGCTTATTGTGTAGCGAAATATGGGCAGAAGTGGATTCGAACAAGGACAATCATTGATAGCTTTATGCCGAGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTGATTACAATTGGTGTATTTGATAATTGTCATTTGCATGGTCCTGACAAAGCTGGAGGTGCAAAAGATTCAAGGATTGGTAAGGTAAGGATTCGACTTTCGACACTCGAGACTGATCGAGTGTACACACATTCCTATCCACTCCTAGTTCTTCACCCAAGTGGTGTGAAGAAAATGGGTGAAATTCAATTGGCTGTGAGGTTCACTTGTTCTTCTTTGCTCAACATGATGCACATGTATTCACTACCTCTGTTGCCAAAGATGCACTATATACACCCGTTGACCGTTAGCCAGCTCGACAGTTTGAGGCATCAAGCTACTCAGATAGTTTCAATGAGGCTGAGTCGCGCTGAGCCACCGCTGAGAAAGGAGGTAGTTGAGTATATGCTTGATGTTGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCTAATTTCTTCAGAATCATGGGAGTATTGAGTGGACTAATTGCTGCGGGAAAATGGTTCGATCAAATTTGCAACTGGAAAAATCCAATTACAACAGTTCTGATTCATATCTTGTTCATAATATTGGTCATGTATCCTGAACTTATCTTACCAACAGTTTTCCTTTACCTCTTCCTGATTGGAATTTGGCACTATAGATGGAGGCCAAGACACCCTCCTAACATGGACACTCGGCTCTCTCACGCCGATTCAGCTCATCCGGACGAACTTGATGAAGAGTTCGACACATTCCCGACTTCACGGCCTTCTGACATTGTTCGGATGAGATATGATCGACTTAGAAGCATAGCTGGTAGGATACAGACTGTGGTTGGCGACTTAGCTACTCAAGGAGAAAGGCTGCAGTCTTTGCTGAGCTGGCGTGATCCAAGAGCAACAGCACTGTTTGTGATTTTCTGTTTGCTTGCTGCTACTATACTGTATGTGACTCCATTCCAAGTTGTGGCCCTTCTGACCGGAATTTATGTGTTGAGACATCCGAGGTTCCGTCATAAGCTTCCGTCGGTGCCGCTTAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA

Protein sequence

>Msa0185030

MLKASERPPPEDFLLKETKPHLGGGKISGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASVLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISLSRSINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEVLGRCAIPLQFMDRRLDHKPVNTRWFNLEKHIIVEGEKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLEVGILSAQGLMPMKNKDGRGTTDAYCVAKYGQKWIRTRTIIDSFMPRWNEQYTWEVFDPCTVITIGVFDNCHLHGPDKAGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVKKMGEIQLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAAGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTVFLYLFLIGIWHYRWRPRHPPNMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLLAATILYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML*