AlfalfaGEDB | Msa0494210

M. sativa cultivar zhongmu-4 / Msa0494210

KEGG: K15687
GO: -
PFAM: PF18345.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494210	XP_003599125.1	97.723	483	8	2	1	482	1	481	0.0	979

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494210	sp\|E0X9N4\|C3H69_ARATH	49.593	369	153	9	1	357	1	348	5.92e-108	327

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494210	G7IWL7	97.723	483	8	2	1	482	1	481	0.0	979

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TFs/TRs:

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Gene ID	Type	Classification
Msa0494210	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0440230	Msa0494210	0.952361	2.858601e-110	-8.615850e-47
Msa0494210	Msa0494400	0.978556	4.490552e-146	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494210	MtrunA17_Chr3g0087881	91.304	483	11	2	1	482	1	453	0.0	904
Msa0494210	MtrunA17_Chr3g0087891	52.888	329	126	8	1	307	1	322	5.86e-106	319

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494210	AT3G08505.1	51.125	311	125	8	1	307	1	288	2.74e-99	301
Msa0494210	AT3G08505.2	51.125	311	125	8	1	307	1	288	2.74e-99	301
Msa0494210	AT3G08505.3	51.125	311	125	8	1	307	1	288	2.74e-99	301

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Find 121 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTCACCATGTCCAAC+AGG	0.444234	3_4:+21932878	Msa0494210:exon
AAAATCTGAGTCCCTCATGA+TGG	0.533480	3_4:-21937704	None:intergenic
AAACCAACCAATCTTTCCAT+AGG	0.507522	3_4:-21938370	None:intergenic
AAACTTACATTCTGATGGCT+TGG	0.395562	3_4:-21934329	None:intergenic
AAATGGAAATTGTCCATTTG+GGG	0.614806	3_4:+21934706	Msa0494210:CDS
AACCAACCAATCTTTCCATA+GGG	0.553971	3_4:-21938369	None:intergenic
AACCCAAACTTACATTCTGA+TGG	0.549424	3_4:-21934334	None:intergenic
AACTTACATTCTGATGGCTT+GGG	0.410250	3_4:-21934328	None:intergenic
AAGATGATGCTTGAGAAGCT+CGG	0.587317	3_4:-21933898	None:intergenic
AAGCCATCAGAATGTAAGTT+TGG	0.301620	3_4:+21934331	Msa0494210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAACGATCGAAGAAAAA+AGG	-	chr3_4:21932917-21932936	None:intergenic	30.0%
TCTGATGAGAAAAATCACAT+TGG	-	chr3_4:21933544-21933563	None:intergenic	30.0%
TATCACTAATGTTGATGTGT+CGG	+	chr3_4:21933712-21933731	Msa0494210:intron	30.0%
TGCTAAAGTAGCATCAAATT+GGG	+	chr3_4:21933964-21933983	Msa0494210:CDS	30.0%
TCCTACTGATAAAAAGGAAA+AGG	+	chr3_4:21934201-21934220	Msa0494210:CDS	30.0%
AGGAAAAGGAAAATCATTTG+AGG	+	chr3_4:21934215-21934234	Msa0494210:CDS	30.0%
TACTACAAAGGAAGAAAAAC+AGG	+	chr3_4:21934519-21934538	Msa0494210:CDS	30.0%
GAAATGGAAATTGTCCATTT+GGG	+	chr3_4:21934705-21934724	Msa0494210:CDS	30.0%
AAATGGAAATTGTCCATTTG+GGG	+	chr3_4:21934706-21934725	Msa0494210:CDS	30.0%
AGAACTAATCCAACAAAGAA+AGG	-	chr3_4:21934865-21934884	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	21932813	21938468	21932813	ID=Msa0494210;Name=Msa0494210
chr3_4	mRNA	21932813	21938468	21932813	ID=Msa0494210-mRNA-1;Parent=Msa0494210;Name=Msa0494210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=76\|1\|1\|1\|0.75\|0.8\|5\|352\|482
chr3_4	exon	21932813	21932899	21932813	ID=Msa0494210-mRNA-1:exon:5533;Parent=Msa0494210-mRNA-1
chr3_4	exon	21933499	21933583	21933499	ID=Msa0494210-mRNA-1:exon:5534;Parent=Msa0494210-mRNA-1
chr3_4	exon	21933836	21934572	21933836	ID=Msa0494210-mRNA-1:exon:5535;Parent=Msa0494210-mRNA-1
chr3_4	exon	21934676	21934745	21934676	ID=Msa0494210-mRNA-1:exon:5536;Parent=Msa0494210-mRNA-1
chr3_4	exon	21937571	21938468	21937571	ID=Msa0494210-mRNA-1:exon:5537;Parent=Msa0494210-mRNA-1
chr3_4	five_prime_UTR	21932813	21932888	21932813	ID=Msa0494210-mRNA-1:five_prime_utr;Parent=Msa0494210-mRNA-1
chr3_4	CDS	21932889	21932899	21932889	ID=Msa0494210-mRNA-1:cds;Parent=Msa0494210-mRNA-1
chr3_4	CDS	21933499	21933583	21933499	ID=Msa0494210-mRNA-1:cds;Parent=Msa0494210-mRNA-1
chr3_4	CDS	21933836	21934572	21933836	ID=Msa0494210-mRNA-1:cds;Parent=Msa0494210-mRNA-1
chr3_4	CDS	21934676	21934745	21934676	ID=Msa0494210-mRNA-1:cds;Parent=Msa0494210-mRNA-1
chr3_4	CDS	21937571	21938116	21937571	ID=Msa0494210-mRNA-1:cds;Parent=Msa0494210-mRNA-1
chr3_4	three_prime_UTR	21938117	21938468	21938117	ID=Msa0494210-mRNA-1:three_prime_utr;Parent=Msa0494210-mRNA-1

Gene Sequence

>Msa0494210

ATGTCCAACAGGGTTTGCAAGTTTTATGCGCGAGGCGTATGTTTGAAAGGCGACCAATGTGATTTTTCTCATCAGAGAAAGGACACTGCATCTGATATTTGCTCTTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGGTGCAGATATAAGCACGTCCGAGCTTCTCAAGCATCATCTTCAGCATCTATGGTTTCAGATTCTGCTGCGCCTGTGGCTCGTAGTGCTAAAGTAGCATCAAATTGGGTTCCGAAGGTTACAAAGGTTCCTTCACCTGACAAGCGTGGTGTAAAGGGTTTACAACGCAAGCATCAGGACTGTACCGATGTCGGTGAATCCAGTACTGGTAGTGCTAGACCACATGAAAATTTGTTTTGTAAATTTGCTGCTGCCAACTGCCCCGGTGGATGTTCTCGTATTCACGGAAATCAATGCTTGTACTGTAGAAAATATTGCCTGCATCCTACTGATAAAAAGGAAAAGGAAAATCATTTGAGGACTTGTGACAAAAAGGAAAAGTACCTTCTGGCTTTGAAAAACAGCGAAGAGATAGAATGCAATGTTTGTCTCGAGCGTGTCCTTTCGAAACCCAAGCCATCAGAATGTAAGTTTGGGTTGCTTCCAGAATGTGATCACGCTTTCTGTTTGTCATGTATTCGCAATTGGCGTAGTAGTGCCCCAACCTCTGCAATGGAAATCGGTAGTAACACCAATACAGTGAGAACCTGCCCTGTTTGCCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTTTACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGTAAACATTTTGACTCTGGAAATGGAAATTGTCCATTTGGGGCTAGCTGTTTCTACAAGCATACAGTGAAGCCTGGCTCATACACATGGAGACACCGCAGGCCACCACCTCAACGCAGACAAAACCATTTCGATATGCATGACATGTTGGATGTGCTCGGTGAGGTTGATCTATCAAGTGGAGAATTTTATTCCATCATGAGGGACTCAGATTTTTTTGAGGGAATGGATCCATTTGAGATGATGGCATTATCAGATTCGCTGGCTGGCGGTTCAGGTCCTTGTTTGGGTCCTTTTGATTCAGACGATGAGGATGATGGGTTTCGTGTTTCTCAAATTGCTGCTATGCAAGAGGCCATGGCTCTTGGGATGGATGCTTTTGGCCCTGATGACGATGACGATGAGGAAGAGTTTAATGTTTTTCGAATGGCTGCTATGCAAGAGGCCATGGTTTCTGGGATAGATGATTTTGGCCCTGATGATTTTCATGGAATTGATCCTATGGATGCAGCTTTGATATCAATGATGATGCATTCTCATATGGACGACGAAGAAGAAGATGAAGATTACGAGGATGAAGAAGAATACACTGATGATGAATATTAG

Protein sequence

>Msa0494210

MSNRVCKFYARGVCLKGDQCDFSHQRKDTASDICSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAAPVARSAKVASNWVPKVTKVPSPDKRGVKGLQRKHQDCTDVGESSTGSARPHENLFCKFAAANCPGGCSRIHGNQCLYCRKYCLHPTDKKEKENHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRSSAPTSAMEIGSNTNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWRHRRPPPQRRQNHFDMHDMLDVLGEVDLSSGEFYSIMRDSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSDDEDDGFRVSQIAAMQEAMALGMDAFGPDDDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFHGIDPMDAALISMMMHSHMDDEEEDEDYEDEEEYTDDEY*