AlfalfaGEDB | Msa0500990

M. sativa cultivar zhongmu-4 / Msa0500990

KEGG: K04498
GO: -
PFAM: PF08214.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500990	XP_039687709.1	96.715	1370	42	2	1	1367	1	1370	0.0	2770

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500990	sp\|Q9C5X9\|HAC1_ARATH	47.388	804	380	10	581	1361	883	1666	0.0	774

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500990	G7J5R6	96.076	1376	45	3	1	1367	1	1376	0.0	2755

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TFs/TRs:

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Gene ID	Type	Classification
Msa0500990	TR	TAZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0429700	Msa0500990	0.822144	2.771095e-53	-8.615850e-47
Msa0429750	Msa0500990	0.888354	6.361838e-73	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0500990	MtrunA17_Chr3g0133461	95.960	1312	42	3	64	1367	16	1324	0.0	2620
Msa0500990	MtrunA17_Chr3g0138411	69.660	1058	234	16	319	1367	208	1187	0.0	1429
Msa0500990	MtrunA17_Chr3g0138411	43.368	475	180	11	1	434	1	427	2.92e-87	310
Msa0500990	MtrunA17_Chr5g0438991	69.720	928	190	12	448	1367	111	955	0.0	1251
Msa0500990	MtrunA17_Chr6g0456861	68.111	831	187	11	543	1367	2	760	0.0	1122
Msa0500990	MtrunA17_Chr6g0456861	53.968	63	22	1	19	81	7	62	1.64e-11	68.9
Msa0500990	MtrunA17_Chr4g0000031	47.909	789	373	11	593	1361	908	1678	0.0	756
Msa0500990	MtrunA17_Chr6g0456851	62.144	597	184	11	526	1085	242	833	0.0	719
Msa0500990	MtrunA17_Chr6g0456851	39.224	232	87	8	16	234	3	193	4.51e-30	129
Msa0500990	MtrunA17_Chr6g0456851	64.000	75	27	0	1127	1201	807	881	6.75e-22	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0500990	AT1G79000.1	47.388	804	380	10	581	1361	883	1666	774
Msa0500990	AT1G79000.2	47.388	804	380	10	581	1361	883	1666	774
Msa0500990	AT1G79000.3	47.388	804	380	10	581	1361	859	1642	773
Msa0500990	AT1G16710.3	47.264	804	381	10	581	1361	866	1649	767
Msa0500990	AT1G16710.10	47.264	804	381	10	581	1361	866	1649	767
Msa0500990	AT1G16710.8	47.264	804	381	10	581	1361	866	1649	767
Msa0500990	AT1G16710.7	47.264	804	381	10	581	1361	866	1649	767
Msa0500990	AT1G16710.1	47.264	804	381	10	581	1361	892	1675	767
Msa0500990	AT1G16710.2	47.264	804	381	10	581	1361	863	1646	766
Msa0500990	AT1G16710.6	47.264	804	381	10	581	1361	827	1610	766

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Find 279 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGAAGAATTTCT+TGG	0.304548	3_4:+41651504	None:intergenic
AAAAGAAGAATTGGATGTAC+AGG	0.398942	3_4:-41648905	Msa0500990:CDS
AAAATGATGGATTCAGGTTT+TGG	0.264675	3_4:-41650428	Msa0500990:CDS
AAAATTGGATTCAACCAAGA+GGG	0.562248	3_4:-41649504	Msa0500990:CDS
AAAGAAATGATCATATACGT+TGG	0.641068	3_4:+41647189	None:intergenic
AAAGAAGAATTGGATGTACA+GGG	0.605113	3_4:-41648904	Msa0500990:CDS
AAAGCATGCTCACTTACTGA+AGG	0.634634	3_4:-41648548	Msa0500990:CDS
AAATAGAGCTTTAAAGACCA+TGG	0.593540	3_4:-41647014	Msa0500990:CDS
AAATCAATGGAAATTGACAT+TGG	0.499856	3_4:-41649597	Msa0500990:CDS
AAATGGTATACAACCGTAAT+TGG	0.232510	3_4:-41651401	Msa0500990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGAATTAAGCAATCAAGT+AGG	-	chr3_4:41645254-41645273	Msa0500990:three_prime_UTR	30.0%
AAATGGTATACAACCGTAAT+TGG	-	chr3_4:41645306-41645325	Msa0500990:three_prime_UTR	30.0%
CTTGCATTTGATACTCTTAT+TGG	+	chr3_4:41645578-41645597	None:intergenic	30.0%
TAACCAGTATTATAGGACTT+AGG	+	chr3_4:41645705-41645724	None:intergenic	30.0%
CAAAGAAAGATTCGAAATTG+AGG	+	chr3_4:41645955-41645974	None:intergenic	30.0%
ATTAACAACATGTCTAACAG+TGG	+	chr3_4:41646208-41646227	None:intergenic	30.0%
TGGATTCAGTATTATCAGAA+GGG	+	chr3_4:41646236-41646255	None:intergenic	30.0%
ATGGATTCAGTATTATCAGA+AGG	+	chr3_4:41646237-41646256	None:intergenic	30.0%
TGCCAAAATACAGAAAATGA+TGG	-	chr3_4:41646266-41646285	Msa0500990:CDS	30.0%
TTGATCAAATGTTAGCTCAT+CGG	+	chr3_4:41646745-41646764	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	41645155	41651574	41645155	ID=Msa0500990;Name=Msa0500990
chr3_4	mRNA	41645155	41651574	41645155	ID=Msa0500990-mRNA-1;Parent=Msa0500990;Name=Msa0500990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.64\|0.6\|1\|1\|1\|15\|191\|1381
chr3_4	exon	41645155	41645427	41645155	ID=Msa0500990-mRNA-1:exon:8749;Parent=Msa0500990-mRNA-1
chr3_4	exon	41645593	41645819	41645593	ID=Msa0500990-mRNA-1:exon:8748;Parent=Msa0500990-mRNA-1
chr3_4	exon	41645908	41646333	41645908	ID=Msa0500990-mRNA-1:exon:8747;Parent=Msa0500990-mRNA-1
chr3_4	exon	41646418	41646475	41646418	ID=Msa0500990-mRNA-1:exon:8746;Parent=Msa0500990-mRNA-1
chr3_4	exon	41646613	41646752	41646613	ID=Msa0500990-mRNA-1:exon:8745;Parent=Msa0500990-mRNA-1
chr3_4	exon	41646961	41647264	41646961	ID=Msa0500990-mRNA-1:exon:8744;Parent=Msa0500990-mRNA-1
chr3_4	exon	41647429	41647574	41647429	ID=Msa0500990-mRNA-1:exon:8743;Parent=Msa0500990-mRNA-1
chr3_4	exon	41647683	41647883	41647683	ID=Msa0500990-mRNA-1:exon:8742;Parent=Msa0500990-mRNA-1
chr3_4	exon	41648025	41648153	41648025	ID=Msa0500990-mRNA-1:exon:8741;Parent=Msa0500990-mRNA-1
chr3_4	exon	41648417	41648698	41648417	ID=Msa0500990-mRNA-1:exon:8740;Parent=Msa0500990-mRNA-1
chr3_4	exon	41648786	41649061	41648786	ID=Msa0500990-mRNA-1:exon:8739;Parent=Msa0500990-mRNA-1
chr3_4	exon	41649353	41650686	41649353	ID=Msa0500990-mRNA-1:exon:8738;Parent=Msa0500990-mRNA-1
chr3_4	exon	41650805	41651084	41650805	ID=Msa0500990-mRNA-1:exon:8737;Parent=Msa0500990-mRNA-1
chr3_4	exon	41651214	41651286	41651214	ID=Msa0500990-mRNA-1:exon:8736;Parent=Msa0500990-mRNA-1
chr3_4	exon	41651387	41651574	41651387	ID=Msa0500990-mRNA-1:exon:8735;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41651387	41651574	41651387	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41651214	41651286	41651214	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41650805	41651084	41650805	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41649353	41650686	41649353	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41648786	41649061	41648786	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41648417	41648698	41648417	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41648025	41648153	41648025	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41647683	41647883	41647683	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41647429	41647574	41647429	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41646961	41647264	41646961	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41646613	41646752	41646613	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41646418	41646475	41646418	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41645908	41646333	41645908	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41645593	41645819	41645593	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	CDS	41645346	41645427	41645346	ID=Msa0500990-mRNA-1:cds;Parent=Msa0500990-mRNA-1
chr3_4	three_prime_UTR	41645155	41645345	41645155	ID=Msa0500990-mRNA-1:three_prime_utr;Parent=Msa0500990-mRNA-1

Gene Sequence

>Msa0500990

ATGTTTGCCAAGGGTTTTCATCTTGGTGGGAGTACTTGGAGAGATATACCAAGAAATTCTTCATCAGTTTTCTCGAACATTCCGCCAAAGAGATGTTTTGATGAATTAAGCAATCAAGTAGGATTCTCCTCAGACTGGCGGTATCATCCTGAAATGGTATACAACCGTAATTGGATAAGAAGAAAAATTTTTGAAATCATTCAGAATGAGCAACTTGGGCCTGCGCTGGAAATATTGCTACTTACCAATGCTGCTTCAAAGGAGGAATATATGAACCTGGAGACATTGAATCAGCGTGTGCAAGCTCTACTGGGTGTTCCTAAGTCCTATAATACTGGTTACTATGGCGTGCCAGAAGCGGGAATATCTCATCCTTCTATTGCTCATAACCTGCCTTGTTTTCCTGGTGATGGTTCATCTATCCCTCCAGTTGCTGATATGGATGTGCTTTGTAACTTACCTGTTTCTTATGGTGGAAGCAATCTGGATGCCAACATCAGATCAATTAGCAACTATTTTTCTCACCAACACGCAAATAACTTGGAGATGGATCTGACAAAATACAAAGATTTTTTTCCTACTACAATGGGAAGATCCCTCCAATCTGAAGATTCAAGTTTTATGTCCTCTCAATCTGCCTCGGTGAATACTTCGGAAGATACAATGCAATATCAACCACAGAAGTTGGATTTTCAGAAGAATTCCACTGTTAGACATGTTGTTAATGATGTCCCTTCTGATAATACTGAATCCATACTACGACCTGCCAAAATACAGAAAATGATGGATTCAGGTTTTGGTGTATCTTCGACTAACCATCCAAGTTTTGATCAATGGAATAATGGGATGGTTCAACCTTATTCTTTTCAACCACATCCAAAAGTGCAACATTCAGAATTTCCCCTCTCTTCTCTCCATTATGAGAGTAATGTGGAACAAATTACAAATCCAATTTTTCATTCTGCGGGAGTTAAGGGGATAAACACCAATGTAATGGTTGATACATTTGGACAGCCAGGGCTTGAAAGCTATGATGTGATGGATAGCAACAATTTAAACAATATTGTCACGGGTATAAAATCCAGGATGCAATGTCTCGACATGGATCCTATTCCTACTAATGGAGAGGATATACAAGGCAGAACTAAATTTGACCACGGCATCAGATTAAATTCCAGTATGCCTACTCTCACCAAGGAGCCTATTCCTACTGCATTCTGGACAAATGCCAAAAAGAAAGCCGATGAGCTAACATTTGATCAAGAGAAGCTAACAAAGTCCTCAGTTACAACTGTTAGTGGGAAAACGAACTACGTGATTTATGATTTGACTTCTGAGCCTAAACTGATTCCCTCGAAAGGCTTAGAAGCTGGTCGAATATCATATGAGCCAGATTCCCTAATCTATGGCATGATAGACTGCCGAAACTCAGTGGAAGTTGATCGTGTCCCAGAACTTATTACAATTGATGGTGATGATGATGAAGAGGACATACAAGGAAGAATTGGATTCAACCACGAGGGGACAGACGCTAAAGAGAAAGTGAGTGAACCAAAAGTTGATCAAGAGAAGAAAGATCTTGAAAGCCATGTCGTGACAGACAGTTGCAAATCAATGGAAATTGACATTGGGTCGAATTCGAATATGCCTGCTCTCATAAGCAAGGTTGCTATTCTTATTGATGTAGATGACAAACAAAATAAAATTGGATTCAACCAAGAGGGGACAGATGCTAAAGAGAAAGCCAGTGAACTAACACCTGATCAAGAGAAGCAAACAAAATTCTCAAACACAATAGTTGATGCTGTTTCCTTGATTGATTTGTTCACACATGATCAAATTACAGAACATATTAATAGTCTCAGAAAGGAATCTATTACTTCTGAGGAGGAAGCAGGGACTGAAGCAAACACATGCCAATTATGTGAAAGGAAAAAGCTTTACTTTGCACCAGTACCAATTGTTTGTTCATGTTGTGGCATACGCATCAAGAGAATATATTTCTGTAGAAAAGAAGAATTGGATGTACAGGGTTGCATTTGCTCCATGTGTTACAAGACTTCTAAAGGTGGGAAAATCACATTCAATGGGACATCTATTTCTAAGAAAAATCTAGAAAAAAGGACCAACGATGAAGTACTTGAAGAACCGTGGGTGGAATGCAATAAATGCAAAAGATGGCAACATCAAATATGTGCACTCTACAACAACAGAAGAGATTTGGATTGCAGTGCTGAGTATATATGTCCTGTATGCCGCTCAAAAGAAATTGAAAATGGAAAGCATGCTCACTTACTGAAGGCTGCTAATTTTGGTGCTAAGGACTTGCCAAGAACCGTGCTAAGTGACCACTTAGAAAAAAGACTTCTTGAGTGTCTCATGCAAGAGAGAGCAAAGTGGGAAAATGTTGAAGGGAACGAGAATCTTGATAAGGTTATAGCTGCAAAAGGTCTTTCTATTAGAGAAGTGTTATCTGTCGACAAACAATTGAAAGTGAATAAGCAGTTTCTGGATATCATTCCAGAGGAGAATTACCCTGCTGAATTCTCTTATAGATCAAGAGTTATTCTTCTGTTTCAGCAGATTGAAGGAGCAGATATATGCATTTTTGGAATGTATGTCCAGGAGTTTGGCTCTGAATGCGGAAATCCGAATCAGCGTTGTGTATACATTTCATATCTTGATTCTGTCAAGTATTTTATGCCTGAAAGAAGGACAAAGAGTGGAGAAGCCCTTCGTACCTTCGTTTACCATGAGATATTGATTGGATACCTTGATTTTTGTAAAAAAAGGGGTTTCCTGACTTGCTACATATGGGCCTGTGCTCCTTCAAGAAAAGGGGATGATTATATACTATATTGCCACCCCAAAGAGCAAAAGACTCCGAAGAATGATAAGCTACGCCGGTGGTATCTATCAATGTTAAAAAAGGCTACTGAAGAAAATATTGTTGTTGGTTTAACCAACGTATATGATCATTTCTTTGTTGCTGCTGAGAAAGGGGACTCCAAGGTGACAGCTTCTCGTTTGCCATACTTTGATGGAGACTGCTGGTCTGGTAATGCTATGGAAGCAGCCAAGACCATTGAAAAAGAGTGTGGAGGAGACTATGAAAAGATGTTGAAGGAACAAGTGCCAAATAGAGCTTTAAAGACCATGGGACATGCCAATCCTTCCAAAGACACTGCCAAAGACATTTTAGTGATGCGAAAAGTTGGCCAAAATATATGGCCTACCAGGGAAAACTTCCTTATAGCTCACTTGCAATATGCATGCATACATTGCCGTGAAGTGATAGTGTCTGGGAAGCGATGGTTTTGCACTGAATGCAAGGAAATTCAGGAGTGCGAAAGATGCCATAGTTCTGATGCGCACCCTTCAAAGAATGGCGAGTTGCATACACTTTGTCAGGCCGTTGTTGATGATATCCCCTCCAACACTAAACATAATGATATTGTCCTTGAGAGTAGATTATTTGAAAATAGGGATAACTTTTTAAGTTTCTGCCAGAAGTCTCAGTTTCAGTTTGACACACTCCGTCGTGCCAAGTATTCCTCGATGATGGTCCTCTACCATCTACACAATCCTACTCTGATGACTGTTGTAAAATGTTGTAGAATCTGTAGTGCACACAATGTATTCCAAAAGAGCTGGAAATGTGAGATTTGTCCAGAGTGTACCATTTGCTCTGCATGCTATAAGGATAGAGGTGCTGACTGCCATGAACACAAGTTGACTCAAAATGAACACAAGCTCACTCAAAATGAACTCAAGTTGACTCAAAATTATTCAAGACCGATATATCAATCTGGGAATCAGGAGTCAAATGAGAAAATGATGGTGAAACTGCTGAACGTTTTAAAGCATGCATCTCAATGCCGTGCAGCTAATGCTGAACCTTGCTCTCACCCAAACTGTTCTCAAATCAAGAAGCTGTTCTCTCATGCCAGTAGGTGCGAAATTCGAGTGAATCGGGGCTGCCAGCAGTGTAAAAAGATATGGTTTATACTTGCTGCTCACTCTAGGAATTGCAAAGACTTGGAGTGTAGCATTCCACGGTGCAGGGATCTAAAGAAGCATGTAGAATCGAAAGCAATGCAGTTTTTGAAAGTGACAAAGCAGCCGTTGATCAATGAATCTTTGTGA

Protein sequence

>Msa0500990

MFAKGFHLGGSTWRDIPRNSSSVFSNIPPKRCFDELSNQVGFSSDWRYHPEMVYNRNWIRRKIFEIIQNEQLGPALEILLLTNAASKEEYMNLETLNQRVQALLGVPKSYNTGYYGVPEAGISHPSIAHNLPCFPGDGSSIPPVADMDVLCNLPVSYGGSNLDANIRSISNYFSHQHANNLEMDLTKYKDFFPTTMGRSLQSEDSSFMSSQSASVNTSEDTMQYQPQKLDFQKNSTVRHVVNDVPSDNTESILRPAKIQKMMDSGFGVSSTNHPSFDQWNNGMVQPYSFQPHPKVQHSEFPLSSLHYESNVEQITNPIFHSAGVKGINTNVMVDTFGQPGLESYDVMDSNNLNNIVTGIKSRMQCLDMDPIPTNGEDIQGRTKFDHGIRLNSSMPTLTKEPIPTAFWTNAKKKADELTFDQEKLTKSSVTTVSGKTNYVIYDLTSEPKLIPSKGLEAGRISYEPDSLIYGMIDCRNSVEVDRVPELITIDGDDDEEDIQGRIGFNHEGTDAKEKVSEPKVDQEKKDLESHVVTDSCKSMEIDIGSNSNMPALISKVAILIDVDDKQNKIGFNQEGTDAKEKASELTPDQEKQTKFSNTIVDAVSLIDLFTHDQITEHINSLRKESITSEEEAGTEANTCQLCERKKLYFAPVPIVCSCCGIRIKRIYFCRKEELDVQGCICSMCYKTSKGGKITFNGTSISKKNLEKRTNDEVLEEPWVECNKCKRWQHQICALYNNRRDLDCSAEYICPVCRSKEIENGKHAHLLKAANFGAKDLPRTVLSDHLEKRLLECLMQERAKWENVEGNENLDKVIAAKGLSIREVLSVDKQLKVNKQFLDIIPEENYPAEFSYRSRVILLFQQIEGADICIFGMYVQEFGSECGNPNQRCVYISYLDSVKYFMPERRTKSGEALRTFVYHEILIGYLDFCKKRGFLTCYIWACAPSRKGDDYILYCHPKEQKTPKNDKLRRWYLSMLKKATEENIVVGLTNVYDHFFVAAEKGDSKVTASRLPYFDGDCWSGNAMEAAKTIEKECGGDYEKMLKEQVPNRALKTMGHANPSKDTAKDILVMRKVGQNIWPTRENFLIAHLQYACIHCREVIVSGKRWFCTECKEIQECERCHSSDAHPSKNGELHTLCQAVVDDIPSNTKHNDIVLESRLFENRDNFLSFCQKSQFQFDTLRRAKYSSMMVLYHLHNPTLMTVVKCCRICSAHNVFQKSWKCEICPECTICSACYKDRGADCHEHKLTQNEHKLTQNELKLTQNYSRPIYQSGNQESNEKMMVKLLNVLKHASQCRAANAEPCSHPNCSQIKKLFSHASRCEIRVNRGCQQCKKIWFILAAHSRNCKDLECSIPRCRDLKKHVESKAMQFLKVTKQPLINESL*