Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501320 | XP_003600083.1 | 87.500 | 96 | 12 | 0 | 70 | 165 | 6 | 101 | 3.51e-54 | 177 |
| Msa0501320 | XP_003600083.1 | 88.732 | 71 | 7 | 1 | 1 | 70 | 1 | 71 | 1.72e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501320 | G7IXN3 | 87.500 | 96 | 12 | 0 | 70 | 165 | 6 | 101 | 1.68e-54 | 177 |
| Msa0501320 | G7IXN3 | 88.732 | 71 | 7 | 1 | 1 | 70 | 1 | 71 | 8.20e-35 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0161070 | Msa0501320 | -0.800938 | 1.139651e-48 | -8.615850e-47 |
| Msa0501320 | Msa1393800 | 0.801036 | 1.088242e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501320 | MtrunA17_Chr3g0098851 | 87.500 | 96 | 12 | 0 | 70 | 165 | 6 | 101 | 3.23e-58 | 177 |
| Msa0501320 | MtrunA17_Chr3g0098851 | 88.732 | 71 | 7 | 1 | 1 | 70 | 1 | 71 | 1.58e-38 | 127 |
| Msa0501320 | MtrunA17_Chr3g0098831 | 80.208 | 96 | 17 | 1 | 70 | 165 | 6 | 99 | 1.79e-51 | 159 |
| Msa0501320 | MtrunA17_Chr3g0098831 | 82.857 | 70 | 11 | 1 | 1 | 70 | 1 | 69 | 4.39e-34 | 115 |
| Msa0501320 | MtrunA17_Chr3g0098821 | 79.167 | 96 | 18 | 1 | 70 | 165 | 6 | 99 | 4.74e-49 | 153 |
| Msa0501320 | MtrunA17_Chr3g0098821 | 81.429 | 70 | 12 | 1 | 1 | 70 | 1 | 69 | 2.33e-33 | 114 |
| Msa0501320 | MtrunA17_Chr3g0098881 | 81.111 | 90 | 16 | 1 | 76 | 165 | 59 | 147 | 2.34e-46 | 148 |
| Msa0501320 | MtrunA17_Chr3g0098881 | 72.857 | 70 | 16 | 1 | 1 | 70 | 51 | 117 | 8.41e-29 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 580 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACCTCAGTTGTCATTT+TGG | 0.206006 | 3_4:+42369099 | None:intergenic |
| CTTCACCTCAGTTGTTGTTT+TGG | 0.227254 | 3_4:+42360556 | None:intergenic |
| CATTACTATGGTTCATCAAT+TGG | 0.311976 | 3_4:+42360453 | None:intergenic |
| TCTGAAATTCAATCAGCTTC+AGG | 0.329647 | 3_4:+42360383 | None:intergenic |
| GTTGAGAGTGGAACAAGTTT+TGG | 0.333307 | 3_4:-42360477 | Msa0501320:CDS |
| TCGAATCACTTCAGAGATCT+TGG | 0.359939 | 3_4:-42360427 | Msa0501320:CDS |
| CCATCTGAGGGTAACTCTTC+GGG | 0.391914 | 3_4:-42369142 | Msa0501320:CDS |
| ACCATCTGAGGGTAACTCTT+CGG | 0.403662 | 3_4:-42369143 | Msa0501320:CDS |
| GTGATTCGAAGCCATTACTA+TGG | 0.408236 | 3_4:+42360441 | None:intergenic |
| CTGAAATTCAATCAGCTTCA+GGG | 0.429098 | 3_4:+42360384 | None:intergenic |
| ATTACTATGGTTCATCAATT+GGG | 0.436611 | 3_4:+42360454 | None:intergenic |
| GCATTCGAGGGTAACTTTGC+GGG | 0.452088 | 3_4:-42360599 | Msa0501320:CDS |
| TCAGGGATGCTCTGAAGTGC+AGG | 0.475944 | 3_4:+42360401 | None:intergenic |
| ATCCCACTCATCATCGTCCT+TGG | 0.481488 | 3_4:+42369171 | None:intergenic |
| AGTGGACATGAGGGAGTTGA+GGG | 0.505947 | 3_4:-42369035 | Msa0501320:CDS |
| CCCGAAGAGTTACCCTCAGA+TGG | 0.513525 | 3_4:+42369142 | None:intergenic |
| CCATGGACGATGATGGTGAA+TGG | 0.517059 | 3_4:-42360631 | Msa0501320:CDS |
| AGAAGAGTTGTTAAGCAAAG+TGG | 0.524820 | 3_4:-42369053 | Msa0501320:CDS |
| AGCATTCGAGGGTAACTTTG+CGG | 0.527174 | 3_4:-42360600 | Msa0501320:CDS |
| CATGGACGATGATGGTGAAT+GGG | 0.539847 | 3_4:-42360630 | Msa0501320:CDS |
| AGAAGAGTTGTTGAGCAAAG+TGG | 0.548563 | 3_4:-42360510 | Msa0501320:CDS |
| CCATTCACCATCATCGTCCA+TGG | 0.553268 | 3_4:+42360631 | None:intergenic |
| AAGTGGACATGAGGGAGTTG+AGG | 0.555801 | 3_4:-42369036 | Msa0501320:CDS |
| GTTGAGCAAAGTGGACATGA+AGG | 0.573285 | 3_4:-42360501 | Msa0501320:CDS |
| TACGCAACCATGGACGATGA+TGG | 0.577720 | 3_4:-42360638 | Msa0501320:CDS |
| CAATTGATGAACCATAGTAA+TGG | 0.579680 | 3_4:-42360452 | Msa0501320:CDS |
| GACCAAGGACGATGATGAGT+GGG | 0.601246 | 3_4:-42369173 | Msa0501320:CDS |
| TGTTAAGCAAAGTGGACATG+AGG | 0.604541 | 3_4:-42369045 | Msa0501320:CDS |
| GTTAAGCAAAGTGGACATGA+GGG | 0.611329 | 3_4:-42369044 | Msa0501320:CDS |
| ATCAACAAAATACGCAACCA+TGG | 0.613080 | 3_4:-42360648 | Msa0501320:CDS |
| GGACATGAGGGAGTTGAGGG+TGG | 0.618214 | 3_4:-42369032 | Msa0501320:CDS |
| TGACCAAGGACGATGATGAG+TGG | 0.618286 | 3_4:-42369174 | Msa0501320:CDS |
| GGACATGAAGGAGTTGAGAG+TGG | 0.627434 | 3_4:-42360489 | Msa0501320:CDS |
| ATCAACAAAATACGTGACCA+AGG | 0.646211 | 3_4:-42369188 | Msa0501320:CDS |
| TGCTTCCAAAACAACAACTG+AGG | 0.693425 | 3_4:-42360561 | Msa0501320:CDS |
| TGCTGCCAAAATGACAACTG+AGG | 0.782554 | 3_4:-42369104 | Msa0501320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCAAATATAAAATATTAA+TGG | - | chr3_4:42363752-42363771 | Msa0501320:intron | 10.0% |
| !!! | TACCATTAATATTTTATATT+TGG | + | chr3_4:42363757-42363776 | None:intergenic | 10.0% |
| !! | GTTTATATAAGAAATTTAGA+GGG | - | chr3_4:42361499-42361518 | Msa0501320:intron | 15.0% |
| !! | AAAAGAAATTGCAAAAAATT+TGG | - | chr3_4:42361528-42361547 | Msa0501320:intron | 15.0% |
| !! | AAAGAAATTGCAAAAAATTT+GGG | - | chr3_4:42361529-42361548 | Msa0501320:intron | 15.0% |
| !!! | CATTATAAGAAATATACTTT+TGG | + | chr3_4:42361914-42361933 | None:intergenic | 15.0% |
| !!! | CAAAAGTATATTTCTTATAA+TGG | - | chr3_4:42361912-42361931 | Msa0501320:intron | 15.0% |
| !! | ATTCTTAAATTATTATCCAA+TGG | + | chr3_4:42362727-42362746 | None:intergenic | 15.0% |
| !! | GTTATAGTACTATAAAATTA+TGG | - | chr3_4:42362934-42362953 | Msa0501320:intron | 15.0% |
| !!! | AAAAGTTTACTCATTTTTTA+TGG | - | chr3_4:42363043-42363062 | Msa0501320:intron | 15.0% |
| !!! | TATTTTATAATACAGAAAAC+AGG | - | chr3_4:42363173-42363192 | Msa0501320:intron | 15.0% |
| !!! | ATTCAGAAATTTTAAACAAA+TGG | + | chr3_4:42363384-42363403 | None:intergenic | 15.0% |
| !!! | TTCTTTTTGTATGTTTTAAA+AGG | + | chr3_4:42363485-42363504 | None:intergenic | 15.0% |
| !!! | ATAGAGAAAATATATTTTCA+AGG | - | chr3_4:42363713-42363732 | Msa0501320:intron | 15.0% |
| !!! | TAAAGATAGAATTTTCATTT+TGG | + | chr3_4:42363823-42363842 | None:intergenic | 15.0% |
| !! | TCATATATCCAATATAAATT+TGG | + | chr3_4:42363941-42363960 | None:intergenic | 15.0% |
| !! | ATTAATAAAAGATTAAGTGT+TGG | - | chr3_4:42363976-42363995 | Msa0501320:intron | 15.0% |
| !! | CAAATCTATTGTATAAAAAT+GGG | - | chr3_4:42364062-42364081 | Msa0501320:intron | 15.0% |
| !! | TATAAAATGCATACATAATA+TGG | + | chr3_4:42364245-42364264 | None:intergenic | 15.0% |
| !! | TATAACAAATTTAACAATGA+TGG | + | chr3_4:42367164-42367183 | None:intergenic | 15.0% |
| !! | TACAAGTAAATTATTACAAT+TGG | + | chr3_4:42367646-42367665 | None:intergenic | 15.0% |
| !! | AAAAAACAAAGTTTAGAAAT+GGG | + | chr3_4:42367928-42367947 | None:intergenic | 15.0% |
| !! | AACATAATATGAGAAAAATT+AGG | - | chr3_4:42368251-42368270 | Msa0501320:intron | 15.0% |
| !!! | TCCTTTATTTATTTTCTTAA+GGG | + | chr3_4:42368680-42368699 | None:intergenic | 15.0% |
| !!! | TTCCTTTATTTATTTTCTTA+AGG | + | chr3_4:42368681-42368700 | None:intergenic | 15.0% |
| !! | TATAATTGCAAAAACAAAAA+TGG | - | chr3_4:42368912-42368931 | Msa0501320:intron | 15.0% |
| !! | ATAATTGCAAAAACAAAAAT+GGG | - | chr3_4:42368913-42368932 | Msa0501320:intron | 15.0% |
| !!! | AATTTCGTTTTCTCTTTATT+TGG | + | chr3_4:42360840-42360859 | None:intergenic | 20.0% |
| !!! | GAAACTATTTTTCAAATTGA+TGG | - | chr3_4:42360937-42360956 | Msa0501320:intron | 20.0% |
| !! | AAATTTGCAACACATTTATA+AGG | - | chr3_4:42361413-42361432 | Msa0501320:intron | 20.0% |
| !! | AATTTGCAACACATTTATAA+GGG | - | chr3_4:42361414-42361433 | Msa0501320:intron | 20.0% |
| !! | AAAAAAATTGCCCAATTTAT+AGG | - | chr3_4:42361475-42361494 | Msa0501320:intron | 20.0% |
| !! | AAAAAATTGCCCAATTTATA+GGG | - | chr3_4:42361476-42361495 | Msa0501320:intron | 20.0% |
| !! | TATATAAACCCCTATAAATT+GGG | + | chr3_4:42361488-42361507 | None:intergenic | 20.0% |
| !! | TTATATAAACCCCTATAAAT+TGG | + | chr3_4:42361489-42361508 | None:intergenic | 20.0% |
| !! | GGTTTATATAAGAAATTTAG+AGG | - | chr3_4:42361498-42361517 | Msa0501320:intron | 20.0% |
| !!! | AGTATATTTCTTATAATGGA+TGG | - | chr3_4:42361916-42361935 | Msa0501320:intron | 20.0% |
| !! | AGCAAAGAAAATTAAATAGA+TGG | - | chr3_4:42361947-42361966 | Msa0501320:intron | 20.0% |
| !! | AAGAAAATTAAATAGATGGA+AGG | - | chr3_4:42361951-42361970 | Msa0501320:intron | 20.0% |
| !!! | CTTATGTTTTACTATTACTA+TGG | - | chr3_4:42362665-42362684 | Msa0501320:intron | 20.0% |
| !!! | TAATTGGTCTTTAAATGATT+GGG | + | chr3_4:42362788-42362807 | None:intergenic | 20.0% |
| !!! | TTAATTGGTCTTTAAATGAT+TGG | + | chr3_4:42362789-42362808 | None:intergenic | 20.0% |
| !!! | AGTTTTGTCCATATATAATT+AGG | - | chr3_4:42362877-42362896 | Msa0501320:intron | 20.0% |
| !! | TATATCCAATATAAATTTGG+TGG | + | chr3_4:42363938-42363957 | None:intergenic | 20.0% |
| !!! | GTTGATAATATTATTCCTTT+TGG | - | chr3_4:42364014-42364033 | Msa0501320:intron | 20.0% |
| !!! | AATAGATTTGGTAGATAATT+GGG | + | chr3_4:42364052-42364071 | None:intergenic | 20.0% |
| !!! | CCATTTTTATACAATAGATT+TGG | + | chr3_4:42364064-42364083 | None:intergenic | 20.0% |
| !! | CCAAATCTATTGTATAAAAA+TGG | - | chr3_4:42364061-42364080 | Msa0501320:intron | 20.0% |
| !!! | AAGATAAAGGAAATTGTTTT+TGG | - | chr3_4:42364293-42364312 | Msa0501320:intron | 20.0% |
| !!! | TTGAAATCTAATCAATTTTC+AGG | + | chr3_4:42364879-42364898 | None:intergenic | 20.0% |
| !!! | TTTCATTTTGTTATAGCATT+CGG | - | chr3_4:42365069-42365088 | Msa0501320:intron | 20.0% |
| !!! | TTACTTATCATTTTATTACC+TGG | + | chr3_4:42365392-42365411 | None:intergenic | 20.0% |
| !! | TAACATTCTGTAATCAAAAT+AGG | + | chr3_4:42365546-42365565 | None:intergenic | 20.0% |
| !! | AATTCCAACAAATAAATAGA+GGG | + | chr3_4:42365593-42365612 | None:intergenic | 20.0% |
| !! | TAATTCCAACAAATAAATAG+AGG | + | chr3_4:42365594-42365613 | None:intergenic | 20.0% |
| !! | TAGTTAGTAATTAAGAAAAC+AGG | + | chr3_4:42366074-42366093 | None:intergenic | 20.0% |
| !! | GAAGTAATTAATTAGTAACT+AGG | + | chr3_4:42366194-42366213 | None:intergenic | 20.0% |
| !!! | ATGTGTAACTAAATCTTTTT+AGG | + | chr3_4:42366409-42366428 | None:intergenic | 20.0% |
| !! | TAAAAAGATTTAGTTACACA+TGG | - | chr3_4:42366408-42366427 | Msa0501320:intron | 20.0% |
| !! | AATGAGAAATTATGAATGAA+AGG | - | chr3_4:42366550-42366569 | Msa0501320:intron | 20.0% |
| !! | GAAGAAAAAAAAGTTTAGAA+AGG | + | chr3_4:42367322-42367341 | None:intergenic | 20.0% |
| !! | GAAAAAACAAAGTTTAGAAA+TGG | + | chr3_4:42367929-42367948 | None:intergenic | 20.0% |
| !! | AAATTGTACGATAAAATGAA+GGG | + | chr3_4:42368473-42368492 | None:intergenic | 20.0% |
| !! | AAAATTGTACGATAAAATGA+AGG | + | chr3_4:42368474-42368493 | None:intergenic | 20.0% |
| !! | TCCCTTAAGAAAATAAATAA+AGG | - | chr3_4:42368676-42368695 | Msa0501320:intron | 20.0% |
| !!! | GAGATATTTCTTTTAAAGAT+TGG | + | chr3_4:42368800-42368819 | None:intergenic | 20.0% |
| !!! | ACAATCAATTTTTTCCTTTT+AGG | - | chr3_4:42368861-42368880 | Msa0501320:intron | 20.0% |
| ! | ATTACTATGGTTCATCAATT+GGG | + | chr3_4:42360611-42360630 | None:intergenic | 25.0% |
| ! | CAAAAAATATTGTCCATTTG+AGG | - | chr3_4:42360753-42360772 | Msa0501320:intron | 25.0% |
| !!! | ATTGATGGATTTGAGTATAA+AGG | - | chr3_4:42360952-42360971 | Msa0501320:intron | 25.0% |
| !!! | AAAGGAATTTAATTTGTCAC+TGG | - | chr3_4:42360970-42360989 | Msa0501320:intron | 25.0% |
| ! | TGAGAAAAATTCCAACAAAA+CGG | + | chr3_4:42361027-42361046 | None:intergenic | 25.0% |
| !! | TTTTGTTGGAATTTTTCTCA+TGG | - | chr3_4:42361027-42361046 | Msa0501320:intron | 25.0% |
| !! | GCAAATCTACATGATAATTT+TGG | - | chr3_4:42361276-42361295 | Msa0501320:intron | 25.0% |
| !! | ATCTACATGATAATTTTGGA+TGG | - | chr3_4:42361280-42361299 | Msa0501320:intron | 25.0% |
| ! | AAAAATTGCCCAATTTATAG+GGG | - | chr3_4:42361477-42361496 | Msa0501320:intron | 25.0% |
| !!! | GCATTTTTGGAAATTTTACA+GGG | + | chr3_4:42361665-42361684 | None:intergenic | 25.0% |
| !!! | TATCTCTTGCAATTTTTTCA+TGG | + | chr3_4:42361729-42361748 | None:intergenic | 25.0% |
| !!! | CATCTTTAAAATGGTGAAAA+CGG | + | chr3_4:42361756-42361775 | None:intergenic | 25.0% |
| !!! | GTTTTCACCATTTTAAAGAT+GGG | - | chr3_4:42361755-42361774 | Msa0501320:intron | 25.0% |
| !!! | ATTTTTTCACCCTTTAACAA+AGG | - | chr3_4:42362220-42362239 | Msa0501320:intron | 25.0% |
| !! | TTGTGTTTTCCTTTGTTAAA+GGG | + | chr3_4:42362232-42362251 | None:intergenic | 25.0% |
| !! | ATTGTGTTTTCCTTTGTTAA+AGG | + | chr3_4:42362233-42362252 | None:intergenic | 25.0% |
| ! | TGTTGTTAACTAATACTCTA+AGG | - | chr3_4:42362507-42362526 | Msa0501320:intron | 25.0% |
| !! | ATACTACTAACATTTTGCTA+CGG | - | chr3_4:42362575-42362594 | Msa0501320:intron | 25.0% |
| !! | TTTTACTATTACTATGGACT+GGG | - | chr3_4:42362671-42362690 | Msa0501320:intron | 25.0% |
| ! | TATCCAATGGCTTATTTAAA+CGG | + | chr3_4:42362714-42362733 | None:intergenic | 25.0% |
| !! | ATTTTCAAAGCTTATACACT+AGG | + | chr3_4:42362851-42362870 | None:intergenic | 25.0% |
| ! | CATCATCACCTAATTATATA+TGG | + | chr3_4:42362888-42362907 | None:intergenic | 25.0% |
| !! | ATAATTAGGTGATGATGATT+AGG | - | chr3_4:42362891-42362910 | Msa0501320:intron | 25.0% |
| !! | TAATTAGGTGATGATGATTA+GGG | - | chr3_4:42362892-42362911 | Msa0501320:intron | 25.0% |
| !!! | GTAAACTTTTTTTTCCTTCT+TGG | + | chr3_4:42362978-42362997 | None:intergenic | 25.0% |
| !! | AAAAGTTTACTCGTCTTTTA+TGG | - | chr3_4:42362988-42363007 | Msa0501320:intron | 25.0% |
| ! | AGTCAACTATGTAATAAGAT+GGG | + | chr3_4:42363146-42363165 | None:intergenic | 25.0% |
| ! | GAAAACTTGATTAATATGGA+TGG | + | chr3_4:42363348-42363367 | None:intergenic | 25.0% |
| ! | TGGAGAAAACTTGATTAATA+TGG | + | chr3_4:42363352-42363371 | None:intergenic | 25.0% |
| !! | ATTAATCAAGTTTTCTCCAT+TGG | - | chr3_4:42363353-42363372 | Msa0501320:intron | 25.0% |
| ! | AAGGAGTAATATGTATCTTA+TGG | + | chr3_4:42363425-42363444 | None:intergenic | 25.0% |
| !!! | GAGAAAATATATTTTCAAGG+AGG | - | chr3_4:42363716-42363735 | Msa0501320:intron | 25.0% |
| ! | GATTTCCACCAAATTTATAT+TGG | - | chr3_4:42363930-42363949 | Msa0501320:intron | 25.0% |
| !! | CAATAGATTTGGTAGATAAT+TGG | + | chr3_4:42364053-42364072 | None:intergenic | 25.0% |
| ! | AAGATATTTGTGTACAGAAA+AGG | - | chr3_4:42364189-42364208 | Msa0501320:intron | 25.0% |
| ! | ATCTTTATCATATCTAGGTT+GGG | + | chr3_4:42364278-42364297 | None:intergenic | 25.0% |
| ! | TATCTTTATCATATCTAGGT+TGG | + | chr3_4:42364279-42364298 | None:intergenic | 25.0% |
| ! | CCTTTATCTTTATCATATCT+AGG | + | chr3_4:42364283-42364302 | None:intergenic | 25.0% |
| ! | CCTAGATATGATAAAGATAA+AGG | - | chr3_4:42364280-42364299 | Msa0501320:intron | 25.0% |
| ! | GAATTTCTAATCTATCTCTT+TGG | + | chr3_4:42364560-42364579 | None:intergenic | 25.0% |
| ! | TAAAAAGCTCATACTATATG+TGG | - | chr3_4:42364604-42364623 | Msa0501320:intron | 25.0% |
| !!! | ATCTAATCAATTTTCAGGTA+TGG | + | chr3_4:42364874-42364893 | None:intergenic | 25.0% |
| !!! | TTCATTTTGTTATAGCATTC+GGG | - | chr3_4:42365070-42365089 | Msa0501320:intron | 25.0% |
| !! | TAATACGACCATTAAGTTTT+TGG | + | chr3_4:42365347-42365366 | None:intergenic | 25.0% |
| ! | AAAAACTTAATGGTCGTATT+AGG | - | chr3_4:42365346-42365365 | Msa0501320:intron | 25.0% |
| !! | AGTAAAGTATCATATCTACA+AGG | - | chr3_4:42365407-42365426 | Msa0501320:intron | 25.0% |
| ! | AAAATAGGTAAACTTTACTC+TGG | + | chr3_4:42365531-42365550 | None:intergenic | 25.0% |
| ! | ATTCCAACAAATAAATAGAG+GGG | + | chr3_4:42365592-42365611 | None:intergenic | 25.0% |
| ! | AAGTTAAGTTCAGTATTTCA+AGG | - | chr3_4:42365624-42365643 | Msa0501320:intron | 25.0% |
| ! | AGTTAAGTTCAGTATTTCAA+GGG | - | chr3_4:42365625-42365644 | Msa0501320:intron | 25.0% |
| ! | AGACAGATATGTATCAAATT+AGG | - | chr3_4:42366220-42366239 | Msa0501320:intron | 25.0% |
| ! | ATATCCAACAAACAAAATAG+AGG | - | chr3_4:42366365-42366384 | Msa0501320:intron | 25.0% |
| !!! | AACTAAATCTTTTTAGGCTA+GGG | + | chr3_4:42366403-42366422 | None:intergenic | 25.0% |
| !!! | TAACTAAATCTTTTTAGGCT+AGG | + | chr3_4:42366404-42366423 | None:intergenic | 25.0% |
| !! | AAAGTAGCAAAAAGCAATTT+TGG | - | chr3_4:42366637-42366656 | Msa0501320:intron | 25.0% |
| ! | TGCTTCTATATAAGATGTAT+TGG | - | chr3_4:42366828-42366847 | Msa0501320:intron | 25.0% |
| ! | GCTTCTATATAAGATGTATT+GGG | - | chr3_4:42366829-42366848 | Msa0501320:intron | 25.0% |
| !!! | TCTGAAACATAGCAATTTTA+AGG | + | chr3_4:42366997-42367016 | None:intergenic | 25.0% |
| !! | GTTTTTATGTCATATTCAGT+AGG | + | chr3_4:42367114-42367133 | None:intergenic | 25.0% |
| ! | GATTCTCAATTTACAATGAT+GGG | + | chr3_4:42367257-42367276 | None:intergenic | 25.0% |
| ! | TGATTCTCAATTTACAATGA+TGG | + | chr3_4:42367258-42367277 | None:intergenic | 25.0% |
| ! | ATCATTTATTGTCATGACAT+GGG | - | chr3_4:42367412-42367431 | Msa0501320:intron | 25.0% |
| !!! | AGTTTTAACTGTTTGTTAGT+TGG | - | chr3_4:42367730-42367749 | Msa0501320:intron | 25.0% |
| ! | ATAGAATTGATCACTTCATT+TGG | + | chr3_4:42367890-42367909 | None:intergenic | 25.0% |
| !! | ATCTAGTTAGAATTTGAGTT+CGG | + | chr3_4:42368142-42368161 | None:intergenic | 25.0% |
| ! | ATTATGTTTAATGACGTCTT+TGG | + | chr3_4:42368239-42368258 | None:intergenic | 25.0% |
| !!! | TAGGATTTGTCTAAAGTTTT+TGG | - | chr3_4:42368565-42368584 | Msa0501320:intron | 25.0% |
| ! | TTTCTTAAGGGAAAAGTAAT+GGG | + | chr3_4:42368668-42368687 | None:intergenic | 25.0% |
| !! | TTTTCTTAAGGGAAAAGTAA+TGG | + | chr3_4:42368669-42368688 | None:intergenic | 25.0% |
| ! | TCGATACTTCATTTATTTGA+TGG | + | chr3_4:42368719-42368738 | None:intergenic | 25.0% |
| !!! | TTTCTTTTAAAGATTGGAGA+GGG | + | chr3_4:42368794-42368813 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTAAAGATTGGAG+AGG | + | chr3_4:42368795-42368814 | None:intergenic | 25.0% |
| !!! | ACTATTGTTTTTTGCCTAAA+AGG | + | chr3_4:42368878-42368897 | None:intergenic | 25.0% |
| ! | GCAAAAAACAATAGTCAATT+AGG | - | chr3_4:42368883-42368902 | Msa0501320:intron | 25.0% |
| ! | ATTACTATGGTTCATCAATT+GGG | + | chr3_4:42360611-42360630 | None:intergenic | 25.0% |
| !!! | TCACGTATTTTGTTGATGAT+TGG | + | chr3_4:42360414-42360433 | None:intergenic | 30.0% |
| CATTACTATGGTTCATCAAT+TGG | + | chr3_4:42360612-42360631 | None:intergenic | 30.0% | |
| CAATTGATGAACCATAGTAA+TGG | - | chr3_4:42360610-42360629 | Msa0501320:CDS | 30.0% | |
| ATCAATCACTTCAAAGATCT+TGG | - | chr3_4:42360635-42360654 | Msa0501320:CDS | 30.0% | |
| ATCAACTTCAATCAACTTCA+GGG | + | chr3_4:42360687-42360706 | None:intergenic | 30.0% | |
| !! | AAGATGAGTATTGACCAATT+GGG | - | chr3_4:42360708-42360727 | Msa0501320:intron | 30.0% |
| ATGTCATAATTCACCTCAAA+TGG | + | chr3_4:42360769-42360788 | None:intergenic | 30.0% | |
| ATTATGACATTCGTCACATT+CGG | - | chr3_4:42360779-42360798 | Msa0501320:intron | 30.0% | |
| !! | GTTTTCTCTTTATTTGGCAT+AGG | + | chr3_4:42360834-42360853 | None:intergenic | 30.0% |
| ! | AATCAATGCTAAGTTGAAAG+AGG | - | chr3_4:42360994-42361013 | Msa0501320:intron | 30.0% |
| ! | GGTGCTTTTATTGTATCAAA+TGG | - | chr3_4:42361052-42361071 | Msa0501320:intron | 30.0% |
| ! | CAAATGGTGTTGAAATTAAG+AGG | - | chr3_4:42361068-42361087 | Msa0501320:intron | 30.0% |
| TGCTTTGACAAAAGCAAATT+AGG | - | chr3_4:42361339-42361358 | Msa0501320:intron | 30.0% | |
| !! | GGCATTTTTGGAAATTTTAC+AGG | + | chr3_4:42361666-42361685 | None:intergenic | 30.0% |
| !! | CGTTTTCACCATTTTAAAGA+TGG | - | chr3_4:42361754-42361773 | Msa0501320:intron | 30.0% |
| ! | AGCAAAACCCATCTTTAAAA+TGG | + | chr3_4:42361765-42361784 | None:intergenic | 30.0% |
| ATATATGTTTGATATGCAGC+TGG | + | chr3_4:42361872-42361891 | None:intergenic | 30.0% | |
| AATTAAATAGATGGAAGGAG+TGG | - | chr3_4:42361956-42361975 | Msa0501320:intron | 30.0% | |
| !! | CATGAAAAAAAGGGTGTTTA+GGG | - | chr3_4:42362107-42362126 | Msa0501320:intron | 30.0% |
| !! | ATGAAAAAAAGGGTGTTTAG+GGG | - | chr3_4:42362108-42362127 | Msa0501320:intron | 30.0% |
| ATCCGGAAATCTCAAAAAAT+CGG | + | chr3_4:42362173-42362192 | None:intergenic | 30.0% | |
| ! | TTTTTCCGGATTTTGTAATC+CGG | + | chr3_4:42362190-42362209 | None:intergenic | 30.0% |
| !!! | AAATGAGTTACGGTTTTTTC+CGG | + | chr3_4:42362204-42362223 | None:intergenic | 30.0% |
| AAGGGTGAAAAAATGAGTTA+CGG | + | chr3_4:42362214-42362233 | None:intergenic | 30.0% | |
| AACAAAGGAAAACACAATTC+CGG | - | chr3_4:42362235-42362254 | Msa0501320:intron | 30.0% | |
| !!! | AAAAATGCCTTTGAGGTTTT+CGG | + | chr3_4:42362271-42362290 | None:intergenic | 30.0% |
| ! | TTTTTCCAAAAATGCCTTTG+AGG | + | chr3_4:42362278-42362297 | None:intergenic | 30.0% |
| CCACACATAATTAATGTGAT+GGG | + | chr3_4:42362486-42362505 | None:intergenic | 30.0% | |
| TCCACACATAATTAATGTGA+TGG | + | chr3_4:42362487-42362506 | None:intergenic | 30.0% | |
| CAGAAAGTAGAGATGTATTT+GGG | + | chr3_4:42362552-42362571 | None:intergenic | 30.0% | |
| ACAGAAAGTAGAGATGTATT+TGG | + | chr3_4:42362553-42362572 | None:intergenic | 30.0% | |
| ! | TACTACTAACATTTTGCTAC+GGG | - | chr3_4:42362576-42362595 | Msa0501320:intron | 30.0% |
| TTTAACATGTACAACATTCC+CGG | + | chr3_4:42362602-42362621 | None:intergenic | 30.0% | |
| ! | GTTTTACTATTACTATGGAC+TGG | - | chr3_4:42362670-42362689 | Msa0501320:intron | 30.0% |
| ! | ATGATTTGTGTGGTGTTAAT+TGG | + | chr3_4:42362804-42362823 | None:intergenic | 30.0% |
| ! | AAAACTATGGATGATTTGTG+TGG | + | chr3_4:42362814-42362833 | None:intergenic | 30.0% |
| ! | AATCATCCATAGTTTTCAGA+AGG | - | chr3_4:42362818-42362837 | Msa0501320:intron | 30.0% |
| GTACTATAAAATTATGGACG+TGG | - | chr3_4:42362940-42362959 | Msa0501320:intron | 30.0% | |
| GTAATAAGATGGGTAATTGA+TGG | + | chr3_4:42363136-42363155 | None:intergenic | 30.0% | |
| GAGTCAACTATGTAATAAGA+TGG | + | chr3_4:42363147-42363166 | None:intergenic | 30.0% | |
| AGAATCAAAGCTAACTTCAT+TGG | - | chr3_4:42363221-42363240 | Msa0501320:intron | 30.0% | |
| TATGGATGGTCTACAAAAAA+TGG | + | chr3_4:42363334-42363353 | None:intergenic | 30.0% | |
| TTACGTTAAGTGTGTGAAAA+GGG | + | chr3_4:42364426-42364445 | None:intergenic | 30.0% | |
| !! | TCACATCTGCAATAGTTTTA+TGG | + | chr3_4:42364494-42364513 | None:intergenic | 30.0% |
| !! | CAAAAAAGACATTTTGCTGT+CGG | + | chr3_4:42364520-42364539 | None:intergenic | 30.0% |
| TTGTTTGGATATTCTGTAAC+CGG | + | chr3_4:42364755-42364774 | None:intergenic | 30.0% | |
| ! | ACTTTGTTGAAGTATCACTT+GGG | + | chr3_4:42364959-42364978 | None:intergenic | 30.0% |
| ! | AACTTTGTTGAAGTATCACT+TGG | + | chr3_4:42364960-42364979 | None:intergenic | 30.0% |
| TAATCAGACGAGTCAAAAAT+GGG | + | chr3_4:42365029-42365048 | None:intergenic | 30.0% | |
| TTAATCAGACGAGTCAAAAA+TGG | + | chr3_4:42365030-42365049 | None:intergenic | 30.0% | |
| ! | AGTGTATAAAATCGTTTTCC+AGG | - | chr3_4:42365371-42365390 | Msa0501320:intron | 30.0% |
| AATCCCCTCTATTTATTTGT+TGG | - | chr3_4:42365586-42365605 | Msa0501320:intron | 30.0% | |
| GTTAAGTTCAGTATTTCAAG+GGG | - | chr3_4:42365626-42365645 | Msa0501320:intron | 30.0% | |
| TTAAGTTCAGTATTTCAAGG+GGG | - | chr3_4:42365627-42365646 | Msa0501320:intron | 30.0% | |
| ATTTAAGTGATGAGTTTGTC+AGG | - | chr3_4:42365653-42365672 | Msa0501320:intron | 30.0% | |
| TAATAGTTGCAATTGACAGT+TGG | + | chr3_4:42365775-42365794 | None:intergenic | 30.0% | |
| ! | AAAAGTACACTTACATTCGT+AGG | - | chr3_4:42365829-42365848 | Msa0501320:intron | 30.0% |
| !! | CCTTTTAGTAGTTCTACAAA+CGG | - | chr3_4:42365973-42365992 | Msa0501320:intron | 30.0% |
| TGATACATATCTGTCTAATC+AGG | + | chr3_4:42366216-42366235 | None:intergenic | 30.0% | |
| !! | TGAACCTCTATTTTGTTTGT+TGG | + | chr3_4:42366372-42366391 | None:intergenic | 30.0% |
| GAAATTATGAATGAAAGGCT+TGG | - | chr3_4:42366555-42366574 | Msa0501320:intron | 30.0% | |
| ! | TGAAAGGCTTGGTATTTATA+AGG | - | chr3_4:42366566-42366585 | Msa0501320:intron | 30.0% |
| TTTATAAGGAGAGTTTCCAT+CGG | - | chr3_4:42366580-42366599 | Msa0501320:intron | 30.0% | |
| !!! | TTGCTACTTTTAAGTGGAAA+AGG | + | chr3_4:42366627-42366646 | None:intergenic | 30.0% |
| !!! | TGCTTTTTGCTACTTTTAAG+TGG | + | chr3_4:42366633-42366652 | None:intergenic | 30.0% |
| ATCAATAATGAAGATCCAAG+AGG | + | chr3_4:42366896-42366915 | None:intergenic | 30.0% | |
| ! | AGAGCAATTGCTTATGATTT+TGG | + | chr3_4:42367065-42367084 | None:intergenic | 30.0% |
| GTAAAAGACCATATCATATG+AGG | - | chr3_4:42367224-42367243 | Msa0501320:intron | 30.0% | |
| GTTCATATCCTCATATGATA+TGG | + | chr3_4:42367235-42367254 | None:intergenic | 30.0% | |
| CATCATTTATTGTCATGACA+TGG | - | chr3_4:42367411-42367430 | Msa0501320:intron | 30.0% | |
| ACTAGAAAAAACATAACCCA+GGG | + | chr3_4:42367492-42367511 | None:intergenic | 30.0% | |
| TACTAGAAAAAACATAACCC+AGG | + | chr3_4:42367493-42367512 | None:intergenic | 30.0% | |
| ! | TTATGATAGTGCTGCTAAAT+AGG | - | chr3_4:42367526-42367545 | Msa0501320:intron | 30.0% |
| ! | TATGATAGTGCTGCTAAATA+GGG | - | chr3_4:42367527-42367546 | Msa0501320:intron | 30.0% |
| GCATTCGAATTTACAATGAT+GGG | + | chr3_4:42367868-42367887 | None:intergenic | 30.0% | |
| AACAAAGTTTAGAAATGGGA+GGG | + | chr3_4:42367924-42367943 | None:intergenic | 30.0% | |
| AAACAAAGTTTAGAAATGGG+AGG | + | chr3_4:42367925-42367944 | None:intergenic | 30.0% | |
| TTCTTCTTACAAGTGATGTA+TGG | - | chr3_4:42367946-42367965 | Msa0501320:intron | 30.0% | |
| TCTTCTTACAAGTGATGTAT+GGG | - | chr3_4:42367947-42367966 | Msa0501320:intron | 30.0% | |
| ! | TGACACTAATTTGTATGAGA+TGG | + | chr3_4:42368048-42368067 | None:intergenic | 30.0% |
| ! | ATGACGTCTTTGGTATTTTA+GGG | + | chr3_4:42368229-42368248 | None:intergenic | 30.0% |
| ! | AATGACGTCTTTGGTATTTT+AGG | + | chr3_4:42368230-42368249 | None:intergenic | 30.0% |
| !! | TGAATGCTGCAATTGATTTT+AGG | - | chr3_4:42368276-42368295 | Msa0501320:intron | 30.0% |
| TAGAAATAGTAGCTGTTCTT+TGG | + | chr3_4:42368629-42368648 | None:intergenic | 30.0% | |
| TCATTTATTTGATGGAGAGA+AGG | + | chr3_4:42368711-42368730 | None:intergenic | 30.0% | |
| AAAAATGAAGATGCATGGAA+GGG | + | chr3_4:42368750-42368769 | None:intergenic | 30.0% | |
| AAAAAATGAAGATGCATGGA+AGG | + | chr3_4:42368751-42368770 | None:intergenic | 30.0% | |
| AGAGAAAAAATGAAGATGCA+TGG | + | chr3_4:42368755-42368774 | None:intergenic | 30.0% | |
| CATTACTATGGTTCATCAAT+TGG | + | chr3_4:42360612-42360631 | None:intergenic | 30.0% | |
| CAATTGATGAACCATAGTAA+TGG | - | chr3_4:42360610-42360629 | Msa0501320:CDS | 30.0% | |
| ATCAACAAAATACGTGACCA+AGG | - | chr3_4:42360417-42360436 | Msa0501320:CDS | 35.0% | |
| AGAAGAGTTGTTAAGCAAAG+TGG | - | chr3_4:42360552-42360571 | Msa0501320:CDS | 35.0% | |
| ! | GTGATTGATAGCCATTACTA+TGG | + | chr3_4:42360624-42360643 | None:intergenic | 35.0% |
| CATCAACTTCAATCAACTTC+AGG | + | chr3_4:42360688-42360707 | None:intergenic | 35.0% | |
| !! | GAAGATGAGTATTGACCAAT+TGG | - | chr3_4:42360707-42360726 | Msa0501320:intron | 35.0% |
| AAAAGCAAGATTGACCCAAT+TGG | + | chr3_4:42360725-42360744 | None:intergenic | 35.0% | |
| ! | CGAAATTGCCAACATTTTGA+AGG | - | chr3_4:42360853-42360872 | Msa0501320:intron | 35.0% |
| ACCAGATAAAGCTATTGTCA+TGG | - | chr3_4:42360882-42360901 | Msa0501320:intron | 35.0% | |
| !! | ACCATGACAATAGCTTTATC+TGG | + | chr3_4:42360886-42360905 | None:intergenic | 35.0% |
| TAAAGCTATTGTCATGGTCA+TGG | - | chr3_4:42360888-42360907 | Msa0501320:intron | 35.0% | |
| TCATGGTCATGGTTTATTTG+TGG | - | chr3_4:42360899-42360918 | Msa0501320:intron | 35.0% | |
| ! | GTTGGAATTTTTCTCATGGT+TGG | - | chr3_4:42361031-42361050 | Msa0501320:intron | 35.0% |
| !!! | GGCAGGAAGTATTTTCTTTT+TGG | - | chr3_4:42361155-42361174 | Msa0501320:intron | 35.0% |
| CTCTAGTCACAAAGAAATTC+GGG | + | chr3_4:42361190-42361209 | None:intergenic | 35.0% | |
| CCTCTAGTCACAAAGAAATT+CGG | + | chr3_4:42361191-42361210 | None:intergenic | 35.0% | |
| GTAGTGTAAACTTTGTAGTG+TGG | - | chr3_4:42361302-42361321 | Msa0501320:intron | 35.0% | |
| GGAAAAGTAATACTCAGCAT+GGG | + | chr3_4:42361620-42361639 | None:intergenic | 35.0% | |
| TAGTGTAAAGATGCTACCTT+GGG | + | chr3_4:42361848-42361867 | None:intergenic | 35.0% | |
| CCAATTCTTGTGTAAACAGA+GGG | + | chr3_4:42362044-42362063 | None:intergenic | 35.0% | |
| ACCAATTCTTGTGTAAACAG+AGG | + | chr3_4:42362045-42362064 | None:intergenic | 35.0% | |
| GTTTACACAAGAATTGGTGA+TGG | - | chr3_4:42362047-42362066 | Msa0501320:intron | 35.0% | |
| CATCAGCACCATGAAAAAAA+GGG | - | chr3_4:42362098-42362117 | Msa0501320:intron | 35.0% | |
| !!! | CCTAAACACCCTTTTTTTCA+TGG | + | chr3_4:42362109-42362128 | None:intergenic | 35.0% |
| !! | CCATGAAAAAAAGGGTGTTT+AGG | - | chr3_4:42362106-42362125 | Msa0501320:intron | 35.0% |
| TCCGGAAATCTCAAAAAATC+GGG | + | chr3_4:42362172-42362191 | None:intergenic | 35.0% | |
| GATTTCCGGATTACAAAATC+CGG | - | chr3_4:42362182-42362201 | Msa0501320:intron | 35.0% | |
| ! | GGTTTTCGGATTTCATAATC+CGG | + | chr3_4:42362257-42362276 | None:intergenic | 35.0% |
| ATGAAATCCGAAAACCTCAA+AGG | - | chr3_4:42362261-42362280 | Msa0501320:intron | 35.0% | |
| !!! | GAAAACCTCAAAGGCATTTT+TGG | - | chr3_4:42362270-42362289 | Msa0501320:intron | 35.0% |
| !! | GCATTTTTGGAAAAAACGCA+GGG | - | chr3_4:42362283-42362302 | Msa0501320:intron | 35.0% |
| TGATATACTGCGTTTGAAAG+TGG | + | chr3_4:42362385-42362404 | None:intergenic | 35.0% | |
| TGAGCATTATGTTAGTGTGA+TGG | + | chr3_4:42362457-42362476 | None:intergenic | 35.0% | |
| CCCATCACATTAATTATGTG+TGG | - | chr3_4:42362483-42362502 | Msa0501320:intron | 35.0% | |
| TGACCGTTTAAATAAGCCAT+TGG | - | chr3_4:42362708-42362727 | Msa0501320:intron | 35.0% | |
| ! | ATGCATCCTTCTGAAAACTA+TGG | + | chr3_4:42362827-42362846 | None:intergenic | 35.0% |
| GAAAACAGGTTCAACACTTA+CGG | - | chr3_4:42363187-42363206 | Msa0501320:intron | 35.0% | |
| !! | TCAAGTTTTCTCCATTGGTT+TGG | - | chr3_4:42363358-42363377 | Msa0501320:intron | 35.0% |
| TAAACAAATGGCCAAACCAA+TGG | + | chr3_4:42363372-42363391 | None:intergenic | 35.0% | |
| GACACGTATTTCAAAACAGA+AGG | + | chr3_4:42363444-42363463 | None:intergenic | 35.0% | |
| ! | GAGTGTATTAGAGAGTATGT+TGG | + | chr3_4:42363888-42363907 | None:intergenic | 35.0% |
| GGGATTTAATCAGTACCAAA+AGG | + | chr3_4:42364032-42364051 | None:intergenic | 35.0% | |
| TGAGTGAAGATGATGCTATT+TGG | + | chr3_4:42364355-42364374 | None:intergenic | 35.0% | |
| GTTACGTTAAGTGTGTGAAA+AGG | + | chr3_4:42364427-42364446 | None:intergenic | 35.0% | |
| ! | GTAGTGGAATGAGTGTTAAA+TGG | + | chr3_4:42364449-42364468 | None:intergenic | 35.0% |
| !!! | CAATAGTTTTATGGAGGCAT+GGG | + | chr3_4:42364485-42364504 | None:intergenic | 35.0% |
| !!! | CATCTGCAATAGTTTTATGG+AGG | + | chr3_4:42364491-42364510 | None:intergenic | 35.0% |
| ! | TTTTCCAACTGCGAAATACT+TGG | + | chr3_4:42364648-42364667 | None:intergenic | 35.0% |
| CAACAAATCCTTTGTCATTC+CGG | - | chr3_4:42364733-42364752 | Msa0501320:intron | 35.0% | |
| CATAATATGACAAGCGACTT+AGG | + | chr3_4:42364779-42364798 | None:intergenic | 35.0% | |
| TTATTGACATCAAACACTGC+AGG | - | chr3_4:42364918-42364937 | Msa0501320:intron | 35.0% | |
| TATTGACATCAAACACTGCA+GGG | - | chr3_4:42364919-42364938 | Msa0501320:intron | 35.0% | |
| ! | TAACTCTAGGAAACTATGTG+AGG | + | chr3_4:42364989-42365008 | None:intergenic | 35.0% |
| TAGTTTCCTAGAGTTATGTG+AGG | - | chr3_4:42364993-42365012 | Msa0501320:intron | 35.0% | |
| GAAAATCCTCACATAACTCT+AGG | + | chr3_4:42365002-42365021 | None:intergenic | 35.0% | |
| ! | GAATTGCAGAATACCAGTTT+TGG | - | chr3_4:42365136-42365155 | Msa0501320:intron | 35.0% |
| CTTAGTAAGACAGAGTCAAT+TGG | - | chr3_4:42365191-42365210 | Msa0501320:intron | 35.0% | |
| ACTAAGTAACGCGAATTGTT+TGG | + | chr3_4:42365446-42365465 | None:intergenic | 35.0% | |
| TGATTACAGAATGTTAGCAG+CGG | - | chr3_4:42365550-42365569 | Msa0501320:intron | 35.0% | |
| TCTTAAGAACTGAAACTCGT+AGG | + | chr3_4:42365808-42365827 | None:intergenic | 35.0% | |
| ! | GTAGGTTCTTACTTTGTTTG+AGG | - | chr3_4:42365859-42365878 | Msa0501320:intron | 35.0% |
| !! | CTTTAGGACACTGTGAATTT+AGG | + | chr3_4:42365911-42365930 | None:intergenic | 35.0% |
| CTAAATTCACAGTGTCCTAA+AGG | - | chr3_4:42365909-42365928 | Msa0501320:intron | 35.0% | |
| TCATTAGCATGAGAACCTTT+AGG | + | chr3_4:42365927-42365946 | None:intergenic | 35.0% | |
| CCGTTTGTAGAACTACTAAA+AGG | + | chr3_4:42365976-42365995 | None:intergenic | 35.0% | |
| ATTATCCTTTCACCTTGGTA+AGG | + | chr3_4:42366018-42366037 | None:intergenic | 35.0% | |
| ACTCAATTATCCTTTCACCT+TGG | + | chr3_4:42366023-42366042 | None:intergenic | 35.0% | |
| GGCAGATATGCATCAATAAT+AGG | - | chr3_4:42366110-42366129 | Msa0501320:intron | 35.0% | |
| TACCCTAAAGAAACTTTGAG+TGG | - | chr3_4:42366464-42366483 | Msa0501320:intron | 35.0% | |
| ACCCTAAAGAAACTTTGAGT+GGG | - | chr3_4:42366465-42366484 | Msa0501320:intron | 35.0% | |
| AACAAAACGATTCAAGAGGA+AGG | + | chr3_4:42366527-42366546 | None:intergenic | 35.0% | |
| TCGAAACAAAACGATTCAAG+AGG | + | chr3_4:42366531-42366550 | None:intergenic | 35.0% | |
| AATGCACTAAAATGCACTCT+CGG | - | chr3_4:42366720-42366739 | Msa0501320:intron | 35.0% | |
| TATAGAAGCAAACACCCAAA+AGG | + | chr3_4:42366818-42366837 | None:intergenic | 35.0% | |
| ! | GATGGAGAAATTTTGTTCTC+AGG | + | chr3_4:42366856-42366875 | None:intergenic | 35.0% |
| ! | TCCATCTGTAATGTCTTTTG+AGG | - | chr3_4:42366870-42366889 | Msa0501320:intron | 35.0% |
| GAAAGGAGAGAGAAAAATTG+TGG | + | chr3_4:42367305-42367324 | None:intergenic | 35.0% | |
| ATTGTGATCGAATTGTGCTA+TGG | - | chr3_4:42367350-42367369 | Msa0501320:intron | 35.0% | |
| TTGTGATCGAATTGTGCTAT+GGG | - | chr3_4:42367351-42367370 | Msa0501320:intron | 35.0% | |
| ! | GAAGTATTCATGAAGCTAAG+AGG | - | chr3_4:42367551-42367570 | Msa0501320:intron | 35.0% |
| GTAGTGAAAACACTAAGTGT+CGG | - | chr3_4:42367663-42367682 | Msa0501320:intron | 35.0% | |
| GGCATTCGAATTTACAATGA+TGG | + | chr3_4:42367869-42367888 | None:intergenic | 35.0% | |
| CTTCTTACAAGTGATGTATG+GGG | - | chr3_4:42367948-42367967 | Msa0501320:intron | 35.0% | |
| TTCTTACAAGTGATGTATGG+GGG | - | chr3_4:42367949-42367968 | Msa0501320:intron | 35.0% | |
| !! | TGACGTCTTTGGTATTTTAG+GGG | + | chr3_4:42368228-42368247 | None:intergenic | 35.0% |
| TTTGTTTAACATGTGCCCTA+AGG | - | chr3_4:42368431-42368450 | Msa0501320:intron | 35.0% | |
| TTGTTTAACATGTGCCCTAA+GGG | - | chr3_4:42368432-42368451 | Msa0501320:intron | 35.0% | |
| TACTCATAAACTGATCACCA+CGG | + | chr3_4:42368547-42368566 | None:intergenic | 35.0% | |
| !! | AACAGCTACTATTTCTAGCA+TGG | - | chr3_4:42368632-42368651 | Msa0501320:intron | 35.0% |
| !! | ACAGCTACTATTTCTAGCAT+GGG | - | chr3_4:42368633-42368652 | Msa0501320:intron | 35.0% |
| TTTATTTGATGGAGAGAAGG+TGG | + | chr3_4:42368708-42368727 | None:intergenic | 35.0% | |
| ATCAACAAAATACGCAACCA+TGG | - | chr3_4:42368957-42368976 | Msa0501320:intron | 35.0% | |
| ! | TGGGATTTTTCACCATCTGA+GGG | - | chr3_4:42360451-42360470 | Msa0501320:CDS | 40.0% |
| AACTCTTCGGGAAAAAGCAA+TGG | - | chr3_4:42360475-42360494 | Msa0501320:CDS | 40.0% | |
| !! | CTTCACCTCAGTTGTCATTT+TGG | + | chr3_4:42360509-42360528 | None:intergenic | 40.0% |
| TGTTAAGCAAAGTGGACATG+AGG | - | chr3_4:42360560-42360579 | Msa0501320:CDS | 40.0% | |
| GTTAAGCAAAGTGGACATGA+GGG | - | chr3_4:42360561-42360580 | Msa0501320:CDS | 40.0% | |
| CACTTCAAAGATCTTGGACT+TGG | - | chr3_4:42360641-42360660 | Msa0501320:CDS | 40.0% | |
| GTCTTCGACCTTCAAAATGT+TGG | + | chr3_4:42360864-42360883 | None:intergenic | 40.0% | |
| ! | GGTGTTGAAATTAAGAGGAG+TGG | - | chr3_4:42361073-42361092 | Msa0501320:intron | 40.0% |
| TTTGTAAGTTGCAGATCCTG+TGG | - | chr3_4:42361134-42361153 | Msa0501320:intron | 40.0% | |
| AAGAAAATACTTCCTGCCAC+AGG | + | chr3_4:42361153-42361172 | None:intergenic | 40.0% | |
| CCGAATTTCTTTGTGACTAG+AGG | - | chr3_4:42361188-42361207 | Msa0501320:intron | 40.0% | |
| TTAGCACAGACTTTATGCCA+CGG | + | chr3_4:42361391-42361410 | None:intergenic | 40.0% | |
| AAAGTAATACTCAGCATGGG+CGG | + | chr3_4:42361617-42361636 | None:intergenic | 40.0% | |
| GGGAAAAGTAATACTCAGCA+TGG | + | chr3_4:42361621-42361640 | None:intergenic | 40.0% | |
| AAAAATGCCCATTTGCAGTC+CGG | - | chr3_4:42361677-42361696 | Msa0501320:intron | 40.0% | |
| TTGCTCATGCAATGATTGAC+TGG | - | chr3_4:42361780-42361799 | Msa0501320:intron | 40.0% | |
| CTAGTGTAAAGATGCTACCT+TGG | + | chr3_4:42361849-42361868 | None:intergenic | 40.0% | |
| ! | ACTTTTGGCATGTAGCTAAC+TGG | + | chr3_4:42361899-42361918 | None:intergenic | 40.0% |
| CCCTCTGTTTACACAAGAAT+TGG | - | chr3_4:42362041-42362060 | Msa0501320:intron | 40.0% | |
| GCATCAGCACCATGAAAAAA+AGG | - | chr3_4:42361717-42361736 | Msa0501320:intron | 40.0% | |
| !!! | AAAGGGTGTTTAGGGGTTTT+CGG | - | chr3_4:42362115-42362134 | Msa0501320:intron | 40.0% |
| !!! | GGCGCGTTACATGATTTTTT+CGG | + | chr3_4:42362151-42362170 | None:intergenic | 40.0% |
| !!! | GCCCGATTTTTTGAGATTTC+CGG | - | chr3_4:42362168-42362187 | Msa0501320:intron | 40.0% |
| !! | GGCATTTTTGGAAAAAACGC+AGG | - | chr3_4:42362282-42362301 | Msa0501320:intron | 40.0% |
| GGTGATCAATATCACCAAGA+AGG | - | chr3_4:42362961-42362980 | Msa0501320:intron | 40.0% | |
| ! | TTACTCGTCTTTTATGGACG+TGG | - | chr3_4:42362994-42363013 | Msa0501320:intron | 40.0% |
| ! | CTTTTATGGACGTGGTGATT+TGG | - | chr3_4:42363002-42363021 | Msa0501320:intron | 40.0% |
| TCAACACTTACGGTTGTTAC+CGG | - | chr3_4:42363197-42363216 | Msa0501320:intron | 40.0% | |
| !! | GAAGTTAGCTTTGATTCTGC+CGG | + | chr3_4:42363219-42363238 | None:intergenic | 40.0% |
| ACGTGACTGTGAATGAGTAA+TGG | - | chr3_4:42364329-42364348 | Msa0501320:intron | 40.0% | |
| GTGAACACAAACTAGCGAAA+GGG | + | chr3_4:42364383-42364402 | None:intergenic | 40.0% | |
| TGTGAACACAAACTAGCGAA+AGG | + | chr3_4:42364384-42364403 | None:intergenic | 40.0% | |
| ! | TTCGCTAGTTTGTGTTCACA+CGG | - | chr3_4:42364384-42364403 | Msa0501320:intron | 40.0% |
| CACTCATTCCACTACTATGT+CGG | - | chr3_4:42364454-42364473 | Msa0501320:intron | 40.0% | |
| !!! | GCAATAGTTTTATGGAGGCA+TGG | + | chr3_4:42364486-42364505 | None:intergenic | 40.0% |
| TTCTGTAACCGGAATGACAA+AGG | + | chr3_4:42364744-42364763 | None:intergenic | 40.0% | |
| ! | ACAAGCGACTTAGGTTTGTT+TGG | + | chr3_4:42364770-42364789 | None:intergenic | 40.0% |
| TCATATTATGATACCCCTGC+TGG | - | chr3_4:42364789-42364808 | Msa0501320:intron | 40.0% | |
| TTCATGCGTGATTCCAAAAC+TGG | + | chr3_4:42365152-42365171 | None:intergenic | 40.0% | |
| CAACGACGCCAAAAACTTAA+TGG | - | chr3_4:42365336-42365355 | Msa0501320:intron | 40.0% | |
| ATTAGCAGGTGCAACTTGAT+AGG | + | chr3_4:42365696-42365715 | None:intergenic | 40.0% | |
| TACCATTCCATCTGATTAGC+AGG | + | chr3_4:42365710-42365729 | None:intergenic | 40.0% | |
| ATCAGATGGAATGGTACATG+TGG | - | chr3_4:42365714-42365733 | Msa0501320:intron | 40.0% | |
| TCAGATGGAATGGTACATGT+GGG | - | chr3_4:42365715-42365734 | Msa0501320:intron | 40.0% | |
| AGTTGCAATTGACAGTTGGA+GGG | + | chr3_4:42365771-42365790 | None:intergenic | 40.0% | |
| TAGTTGCAATTGACAGTTGG+AGG | + | chr3_4:42365772-42365791 | None:intergenic | 40.0% | |
| ACATTCGTAGGTTTACGTGT+AGG | - | chr3_4:42365841-42365860 | Msa0501320:intron | 40.0% | |
| TATAAGCGTCTACCTTACCA+AGG | - | chr3_4:42366003-42366022 | Msa0501320:intron | 40.0% | |
| AACTAGTTACTTCCCGATTC+TGG | - | chr3_4:42366089-42366108 | Msa0501320:intron | 40.0% | |
| TGATGCATATCTGCCAGAAT+CGG | + | chr3_4:42366105-42366124 | None:intergenic | 40.0% | |
| !! | CCTGAGACAAAAGGTACTTA+GGG | + | chr3_4:42366146-42366165 | None:intergenic | 40.0% |
| ! | CCTAAGTACCTTTTGTCTCA+GGG | - | chr3_4:42366144-42366163 | Msa0501320:intron | 40.0% |
| CCCCACTCAAAGTTTCTTTA+GGG | + | chr3_4:42366469-42366488 | None:intergenic | 40.0% | |
| CCCTAAAGAAACTTTGAGTG+GGG | - | chr3_4:42366466-42366485 | Msa0501320:intron | 40.0% | |
| TCCCCACTCAAAGTTTCTTT+AGG | + | chr3_4:42366470-42366489 | None:intergenic | 40.0% | |
| AAGCATTACGAGCTTCACAT+AGG | + | chr3_4:42366503-42366522 | None:intergenic | 40.0% | |
| TTCTTAAGCTCATCTTCCGA+TGG | + | chr3_4:42366599-42366618 | None:intergenic | 40.0% | |
| !! | ACTTTTAAGTGGAAAAGGCG+TGG | + | chr3_4:42366622-42366641 | None:intergenic | 40.0% |
| ! | CTCTGAGCATTGTTGAATAC+GGG | + | chr3_4:42366663-42366682 | None:intergenic | 40.0% |
| ! | GCTCTGAGCATTGTTGAATA+CGG | + | chr3_4:42366664-42366683 | None:intergenic | 40.0% |
| ATGCACTAAAATGCACTCTC+GGG | - | chr3_4:42366721-42366740 | Msa0501320:intron | 40.0% | |
| !! | TCTCTGTTTCTTCGTCCTTT+TGG | - | chr3_4:42366800-42366819 | Msa0501320:intron | 40.0% |
| !! | CTCTGTTTCTTCGTCCTTTT+GGG | - | chr3_4:42366801-42366820 | Msa0501320:intron | 40.0% |
| GCCTCAAAAGACATTACAGA+TGG | + | chr3_4:42366874-42366893 | None:intergenic | 40.0% | |
| !!! | TAATGTCTTTTGAGGCCTCT+TGG | - | chr3_4:42366878-42366897 | Msa0501320:intron | 40.0% |
| GATCTTCCTAAAGTCTTCAC+AGG | - | chr3_4:42366913-42366932 | Msa0501320:intron | 40.0% | |
| TGAAGACCTGTGAAGACTTT+AGG | + | chr3_4:42366922-42366941 | None:intergenic | 40.0% | |
| GCTCTAATACTGCTCTATTC+TGG | - | chr3_4:42367080-42367099 | Msa0501320:intron | 40.0% | |
| TGTGATCGAATTGTGCTATG+GGG | - | chr3_4:42367352-42367371 | Msa0501320:intron | 40.0% | |
| AAGTCGAAAGTTCCTTGAAG+AGG | - | chr3_4:42367463-42367482 | Msa0501320:intron | 40.0% | |
| ATGAAGCTAAGAGGTCTGAT+GGG | - | chr3_4:42367560-42367579 | Msa0501320:intron | 40.0% | |
| ! | GCATTGGCCAACTTGAATTA+AGG | - | chr3_4:42367590-42367609 | Msa0501320:intron | 40.0% |
| TTGGCCAACTTGAATTAAGG+TGG | - | chr3_4:42367593-42367612 | Msa0501320:intron | 40.0% | |
| CACACCACCTTAATTCAAGT+TGG | + | chr3_4:42367600-42367619 | None:intergenic | 40.0% | |
| AAGTTTAGAAATGGGAGGGA+GGG | + | chr3_4:42367920-42367939 | None:intergenic | 40.0% | |
| AAAGTTTAGAAATGGGAGGG+AGG | + | chr3_4:42367921-42367940 | None:intergenic | 40.0% | |
| AAGAAGGTTATCCCCAACTA+AGG | + | chr3_4:42367980-42367999 | None:intergenic | 40.0% | |
| ! | AATGCTAACTTGTGCTCTCA+AGG | - | chr3_4:42368301-42368320 | Msa0501320:intron | 40.0% |
| ! | ATGCTAACTTGTGCTCTCAA+GGG | - | chr3_4:42368302-42368321 | Msa0501320:intron | 40.0% |
| CATGCTAACTTATGCCCTTA+GGG | + | chr3_4:42368449-42368468 | None:intergenic | 40.0% | |
| TCATGCTAACTTATGCCCTT+AGG | + | chr3_4:42368450-42368469 | None:intergenic | 40.0% | |
| GTGGTGATCAGTTTATGAGT+AGG | - | chr3_4:42368546-42368565 | Msa0501320:intron | 40.0% | |
| ! | AGGGAAAAGTAATGGGAAAG+TGG | + | chr3_4:42368661-42368680 | None:intergenic | 40.0% |
| GAGAGGGTTGAGTGATATAT+AGG | + | chr3_4:42368778-42368797 | None:intergenic | 40.0% | |
| !! | ATGGGATTTTTCAGCATTCG+AGG | - | chr3_4:42368993-42369012 | Msa0501320:intron | 40.0% |
| !! | TGGGATTTTTCAGCATTCGA+GGG | - | chr3_4:42368994-42369013 | Msa0501320:intron | 40.0% |
| AACTTTGCGGGAAAAAGCAA+CGG | - | chr3_4:42369018-42369037 | Msa0501320:intron | 40.0% | |
| TGCTTCCAAAACAACAACTG+AGG | - | chr3_4:42369044-42369063 | Msa0501320:CDS | 40.0% | |
| !!! | CTTCACCTCAGTTGTTGTTT+TGG | + | chr3_4:42369052-42369071 | None:intergenic | 40.0% |
| AGAAGAGTTGTTGAGCAAAG+TGG | - | chr3_4:42369095-42369114 | Msa0501320:CDS | 40.0% | |
| ! | GTTGAGAGTGGAACAAGTTT+TGG | - | chr3_4:42369128-42369147 | Msa0501320:CDS | 40.0% |
| GTGATTCGAAGCCATTACTA+TGG | + | chr3_4:42369167-42369186 | None:intergenic | 40.0% | |
| TCGAATCACTTCAGAGATCT+TGG | - | chr3_4:42369178-42369197 | Msa0501320:CDS | 40.0% | |
| ! | GTGGGATTTTTCACCATCTG+AGG | - | chr3_4:42360450-42360469 | Msa0501320:CDS | 45.0% |
| ACCATCTGAGGGTAACTCTT+CGG | - | chr3_4:42360462-42360481 | Msa0501320:CDS | 45.0% | |
| TGCTGCCAAAATGACAACTG+AGG | - | chr3_4:42360501-42360520 | Msa0501320:CDS | 45.0% | |
| TTAAGAGGAGTGGCTTGAAC+TGG | - | chr3_4:42361083-42361102 | Msa0501320:intron | 45.0% | |
| ! | GGAGTTGCATTAAGTGTTGC+AGG | - | chr3_4:42361104-42361123 | Msa0501320:intron | 45.0% |
| TTTGTAGTGTGGCAACCAGA+AGG | - | chr3_4:42361313-42361332 | Msa0501320:intron | 45.0% | |
| TTGTAGTGTGGCAACCAGAA+GGG | - | chr3_4:42361314-42361333 | Msa0501320:intron | 45.0% | |
| TTTGTCAAAGCAGTCCCTTC+TGG | + | chr3_4:42361331-42361350 | None:intergenic | 45.0% | |
| ! | GCATGTTGAGTTTGTCGACT+TGG | - | chr3_4:42361365-42361384 | Msa0501320:intron | 45.0% |
| AAAAAATTTGGGCCAGAGCC+CGG | - | chr3_4:42361540-42361559 | Msa0501320:intron | 45.0% | |
| ! | GGACTGCAAATGGGCATTTT+TGG | + | chr3_4:42361678-42361697 | None:intergenic | 45.0% |
| ACGTAATCCGGACTGCAAAT+GGG | + | chr3_4:42361687-42361706 | None:intergenic | 45.0% | |
| TACGTAATCCGGACTGCAAA+TGG | + | chr3_4:42361688-42361707 | None:intergenic | 45.0% | |
| GCAATCCGGATTACGTAATC+CGG | + | chr3_4:42361699-42361718 | None:intergenic | 45.0% | |
| !! | TTCATGGTGCTGATGCAATC+CGG | + | chr3_4:42361713-42361732 | None:intergenic | 45.0% |
| AATTATGAGAGCTCGAGCAC+TGG | - | chr3_4:42361803-42361822 | Msa0501320:intron | 45.0% | |
| ATTATGAGAGCTCGAGCACT+GGG | - | chr3_4:42361804-42361823 | Msa0501320:intron | 45.0% | |
| ATGGAAGGAGTGGTTACAGT+TGG | - | chr3_4:42361966-42361985 | Msa0501320:intron | 45.0% | |
| AGGAGTGGTTACAGTTGGAA+TGG | - | chr3_4:42361971-42361990 | Msa0501320:intron | 45.0% | |
| ! | TGTGTAAACAGAGGGTGTGA+TGG | + | chr3_4:42362036-42362055 | None:intergenic | 45.0% |
| GCTGTCCAGATTACGTAATC+CGG | - | chr3_4:42362071-42362090 | Msa0501320:intron | 45.0% | |
| GCAATCCGGATTACGTAATC+TGG | + | chr3_4:42361699-42361718 | None:intergenic | 45.0% | |
| !! | TTCATGGTGCTGATGCAATC+CGG | + | chr3_4:42361713-42361732 | None:intergenic | 45.0% |
| ACGCTAGAGTCATATAGGGT+GGG | - | chr3_4:42362307-42362326 | Msa0501320:intron | 45.0% | |
| AAGTAATACTCGCCCATGCT+TGG | - | chr3_4:42362332-42362351 | Msa0501320:intron | 45.0% | |
| AGTAATACTCGCCCATGCTT+GGG | - | chr3_4:42362333-42362352 | Msa0501320:intron | 45.0% | |
| ! | ACTAACATTTTGCTACGGGC+CGG | - | chr3_4:42362580-42362599 | Msa0501320:intron | 45.0% |
| GAAATACTTGGCGCAGAAGA+AGG | + | chr3_4:42364636-42364655 | None:intergenic | 45.0% | |
| TCAACTCAAGAGAGGGTTCT+TGG | + | chr3_4:42364678-42364697 | None:intergenic | 45.0% | |
| CCTGAGATCAACTCAAGAGA+GGG | + | chr3_4:42364685-42364704 | None:intergenic | 45.0% | |
| ACCTGAGATCAACTCAAGAG+AGG | + | chr3_4:42364686-42364705 | None:intergenic | 45.0% | |
| TTGTTGAACACGCTAGCAAG+TGG | + | chr3_4:42364719-42364738 | None:intergenic | 45.0% | |
| CAACACAATCAATCCAGCAG+GGG | + | chr3_4:42364805-42364824 | None:intergenic | 45.0% | |
| GCAACACAATCAATCCAGCA+GGG | + | chr3_4:42364806-42364825 | None:intergenic | 45.0% | |
| TGCAACACAATCAATCCAGC+AGG | + | chr3_4:42364807-42364826 | None:intergenic | 45.0% | |
| TGCTGGATTGATTGTGTTGC+AGG | - | chr3_4:42364806-42364825 | Msa0501320:intron | 45.0% | |
| ! | AGGCATCCAGAAAGTGTGTT+AGG | - | chr3_4:42364826-42364845 | Msa0501320:intron | 45.0% |
| TGCACACCTAACACACTTTC+TGG | + | chr3_4:42364835-42364854 | None:intergenic | 45.0% | |
| TCTAGGAAACTATGTGAGGC+TGG | + | chr3_4:42364985-42365004 | None:intergenic | 45.0% | |
| !! | TGCTTTCTGAAGTGCTCGTT+CGG | - | chr3_4:42365094-42365113 | Msa0501320:intron | 45.0% |
| !!! | AAGTTTTTGGCGTCGTTGCT+GGG | + | chr3_4:42365334-42365353 | None:intergenic | 45.0% |
| !!! | TAAGTTTTTGGCGTCGTTGC+TGG | + | chr3_4:42365335-42365354 | None:intergenic | 45.0% |
| ACAGAATGTTAGCAGCGGTT+AGG | - | chr3_4:42365555-42365574 | Msa0501320:intron | 45.0% | |
| GGTGCAACTTGATAGGTGAT+AGG | + | chr3_4:42365689-42365708 | None:intergenic | 45.0% | |
| AGTTGCACCTGCTAATCAGA+TGG | - | chr3_4:42365700-42365719 | Msa0501320:intron | 45.0% | |
| CACCTGCTAATCAGATGGAA+TGG | - | chr3_4:42365705-42365724 | Msa0501320:intron | 45.0% | |
| CAGATGGAATGGTACATGTG+GGG | - | chr3_4:42365716-42365735 | Msa0501320:intron | 45.0% | |
| ACCATAACCCTGAGAGAGTA+AGG | + | chr3_4:42365742-42365761 | None:intergenic | 45.0% | |
| GTCTACCTTACCAAGGTGAA+AGG | - | chr3_4:42366010-42366029 | Msa0501320:intron | 45.0% | |
| GATGCATATCTGCCAGAATC+GGG | + | chr3_4:42366104-42366123 | None:intergenic | 45.0% | |
| !! | GAGACAAAAGGTACTTAGGG+AGG | + | chr3_4:42366143-42366162 | None:intergenic | 45.0% |
| ! | CCCTAAGTACCTTTTGTCTC+AGG | - | chr3_4:42366143-42366162 | Msa0501320:intron | 45.0% |
| !! | CCCTGAGACAAAAGGTACTT+AGG | + | chr3_4:42366147-42366166 | None:intergenic | 45.0% |
| AGGAAAACACGTCGAAAGAG+AGG | + | chr3_4:42366174-42366193 | None:intergenic | 45.0% | |
| AACCCTGACTTAGGCACTTA+GGG | + | chr3_4:42366257-42366276 | None:intergenic | 45.0% | |
| TAACCCTGACTTAGGCACTT+AGG | + | chr3_4:42366258-42366277 | None:intergenic | 45.0% | |
| CTGAAGCATAACCCTGACTT+AGG | + | chr3_4:42366266-42366285 | None:intergenic | 45.0% | |
| AAGTCAGGGTTATGCTTCAG+AGG | - | chr3_4:42366266-42366285 | Msa0501320:intron | 45.0% | |
| TGCACTAAAATGCACTCTCG+GGG | - | chr3_4:42366722-42366741 | Msa0501320:intron | 45.0% | |
| CATGAAGCTAAGAGGTCTGA+TGG | - | chr3_4:42367559-42367578 | Msa0501320:intron | 45.0% | |
| TCTGATGGGAATGGATGCAT+TGG | - | chr3_4:42367574-42367593 | Msa0501320:intron | 45.0% | |
| TTACAAGTGATGTATGGGGG+TGG | - | chr3_4:42367952-42367971 | Msa0501320:intron | 45.0% | |
| TACAAGTGATGTATGGGGGT+GGG | - | chr3_4:42367953-42367972 | Msa0501320:intron | 45.0% | |
| TGGGGATAACCTTCTTTGTG+TGG | - | chr3_4:42367984-42368003 | Msa0501320:intron | 45.0% | |
| GGGGATAACCTTCTTTGTGT+GGG | - | chr3_4:42367985-42368004 | Msa0501320:intron | 45.0% | |
| AACCTTCTTTGTGTGGGATG+AGG | - | chr3_4:42367991-42368010 | Msa0501320:intron | 45.0% | |
| GTAGTAGTGTAGTATGCGTG+TGG | + | chr3_4:42368514-42368533 | None:intergenic | 45.0% | |
| GAGAGATTGAGAGAGAGAGA+GGG | + | chr3_4:42368824-42368843 | None:intergenic | 45.0% | |
| AGAGAGATTGAGAGAGAGAG+AGG | + | chr3_4:42368825-42368844 | None:intergenic | 45.0% | |
| ! | CATGGACGATGATGGTGAAT+GGG | - | chr3_4:42368975-42368994 | Msa0501320:intron | 45.0% |
| AGCATTCGAGGGTAACTTTG+CGG | - | chr3_4:42369005-42369024 | Msa0501320:intron | 45.0% | |
| GTTGAGCAAAGTGGACATGA+AGG | - | chr3_4:42369104-42369123 | Msa0501320:CDS | 45.0% | |
| !!! | TATATTTAAGTTAAAAAAAT+AGG | + | chr3_4:42363535-42363554 | None:intergenic | 5.0% |
| !!! | TATTTTTTTATTTTTTGTTT+TGG | + | chr3_4:42364582-42364601 | None:intergenic | 5.0% |
| !!! | ATCTATTTTTTTTTTATTTT+TGG | - | chr3_4:42365219-42365238 | Msa0501320:intron | 5.0% |
| TGACCAAGGACGATGATGAG+TGG | - | chr3_4:42360431-42360450 | Msa0501320:CDS | 50.0% | |
| GACCAAGGACGATGATGAGT+GGG | - | chr3_4:42360432-42360451 | Msa0501320:CDS | 50.0% | |
| ATCCCACTCATCATCGTCCT+TGG | + | chr3_4:42360437-42360456 | None:intergenic | 50.0% | |
| CCATCTGAGGGTAACTCTTC+GGG | - | chr3_4:42360463-42360482 | Msa0501320:CDS | 50.0% | |
| AAGTGGACATGAGGGAGTTG+AGG | - | chr3_4:42360569-42360588 | Msa0501320:CDS | 50.0% | |
| AGTGGACATGAGGGAGTTGA+GGG | - | chr3_4:42360570-42360589 | Msa0501320:CDS | 50.0% | |
| !! | TCAGGGATGCTCTGAAGTGA+AGG | + | chr3_4:42360670-42360689 | None:intergenic | 50.0% |
| TAAGTTGCAGATCCTGTGGC+AGG | - | chr3_4:42361138-42361157 | Msa0501320:intron | 50.0% | |
| AAAAATTTGGGCCAGAGCCC+GGG | - | chr3_4:42361541-42361560 | Msa0501320:intron | 50.0% | |
| GCGCGAGAAATCAATAGGGT+GGG | + | chr3_4:42361641-42361660 | None:intergenic | 50.0% | |
| GCAGTCCGGATTACGTAATC+CGG | - | chr3_4:42361691-42361710 | Msa0501320:intron | 50.0% | |
| ! | TTATGAGAGCTCGAGCACTG+GGG | - | chr3_4:42361805-42361824 | Msa0501320:intron | 50.0% |
| ! | TTCAGGTTTGCTCTTGCCCA+AGG | - | chr3_4:42361829-42361848 | Msa0501320:intron | 50.0% |
| GGTTACAGTTGGAATGGCAG+TGG | - | chr3_4:42361977-42361996 | Msa0501320:intron | 50.0% | |
| AGGGCACGCTAGAGTCATAT+AGG | - | chr3_4:42362302-42362321 | Msa0501320:intron | 50.0% | |
| GGGCACGCTAGAGTCATATA+GGG | - | chr3_4:42362303-42362322 | Msa0501320:intron | 50.0% | |
| CACGCTAGAGTCATATAGGG+TGG | - | chr3_4:42362306-42362325 | Msa0501320:intron | 50.0% | |
| TGGCTCATTCACCCAAGCAT+GGG | + | chr3_4:42362347-42362366 | None:intergenic | 50.0% | |
| TTGGCTCATTCACCCAAGCA+TGG | + | chr3_4:42362348-42362367 | None:intergenic | 50.0% | |
| CTTGGGTGAATGAGCCAACT+TGG | - | chr3_4:42362350-42362369 | Msa0501320:intron | 50.0% | |
| AGTGGTGTGTGAGTCCAAGT+TGG | + | chr3_4:42362367-42362386 | None:intergenic | 50.0% | |
| ! | CTAACATTTTGCTACGGGCC+GGG | - | chr3_4:42362581-42362600 | Msa0501320:intron | 50.0% |
| TGCGCCAAGTATTTCGCAGT+TGG | - | chr3_4:42364641-42364660 | Msa0501320:intron | 50.0% | |
| !! | CCCTCTCTTGAGTTGATCTC+AGG | - | chr3_4:42364682-42364701 | Msa0501320:intron | 50.0% |
| TCAAACACTGCAGGGTTTGC+TGG | - | chr3_4:42364927-42364946 | Msa0501320:intron | 50.0% | |
| !!! | AGTTTTTGGCGTCGTTGCTG+GGG | + | chr3_4:42365333-42365352 | None:intergenic | 50.0% |
| GCCTTACTCTCTCAGGGTTA+TGG | - | chr3_4:42365738-42365757 | Msa0501320:intron | 50.0% | |
| ACTGAAACTCGTAGGCACTC+TGG | + | chr3_4:42365800-42365819 | None:intergenic | 50.0% | |
| GAGGAGAACCCTGAGACAAA+AGG | + | chr3_4:42366155-42366174 | None:intergenic | 50.0% | |
| CTCCCTAAGTGCCTAAGTCA+GGG | - | chr3_4:42366252-42366271 | Msa0501320:intron | 50.0% | |
| ! | TCAACAATGCTCAGAGCGTC+TGG | - | chr3_4:42366667-42366686 | Msa0501320:intron | 50.0% |
| TTCCTTGAAGAGGTAGCCCT+GGG | - | chr3_4:42367473-42367492 | Msa0501320:intron | 50.0% | |
| GCTAAGAGGTCTGATGGGAA+TGG | - | chr3_4:42367565-42367584 | Msa0501320:intron | 50.0% | |
| CACCTCATCCCACACAAAGA+AGG | + | chr3_4:42367996-42368015 | None:intergenic | 50.0% | |
| !! | CTACTACTGCTAGCTTTCCG+TGG | - | chr3_4:42368527-42368546 | Msa0501320:intron | 50.0% |
| TACGCAACCATGGACGATGA+TGG | - | chr3_4:42368967-42368986 | Msa0501320:intron | 50.0% | |
| CCATTCACCATCATCGTCCA+TGG | + | chr3_4:42368977-42368996 | None:intergenic | 50.0% | |
| ! | CCATGGACGATGATGGTGAA+TGG | - | chr3_4:42368974-42368993 | Msa0501320:intron | 50.0% |
| GCATTCGAGGGTAACTTTGC+GGG | - | chr3_4:42369006-42369025 | Msa0501320:intron | 50.0% | |
| GGACATGAAGGAGTTGAGAG+TGG | - | chr3_4:42369116-42369135 | Msa0501320:CDS | 50.0% | |
| CCCGAAGAGTTACCCTCAGA+TGG | + | chr3_4:42360466-42360485 | None:intergenic | 55.0% | |
| !! | GAGGAGACGAGCCGTTTTGT+TGG | - | chr3_4:42361013-42361032 | Msa0501320:intron | 55.0% |
| !! | TGAGTTTGTCGACTTGGCCG+TGG | - | chr3_4:42361371-42361390 | Msa0501320:intron | 55.0% |
| ACTCAGCATGGGCGGTTTCA+AGG | + | chr3_4:42361609-42361628 | None:intergenic | 55.0% | |
| CGCGCGAGAAATCAATAGGG+TGG | + | chr3_4:42361642-42361661 | None:intergenic | 55.0% | |
| GGGCGCGCGAGAAATCAATA+GGG | + | chr3_4:42361645-42361664 | None:intergenic | 55.0% | |
| AGGGCGCGCGAGAAATCAAT+AGG | + | chr3_4:42361646-42361665 | None:intergenic | 55.0% | |
| GGGTGTGATGGCTAGAGCTA+AGG | + | chr3_4:42362024-42362043 | None:intergenic | 55.0% | |
| !! | ACACTGCAGGGTTTGCTGGT+TGG | - | chr3_4:42364931-42364950 | Msa0501320:intron | 55.0% |
| ATGTGGGGCCTTACTCTCTC+AGG | - | chr3_4:42365731-42365750 | Msa0501320:intron | 55.0% | |
| TGTGGGGCCTTACTCTCTCA+GGG | - | chr3_4:42365732-42365751 | Msa0501320:intron | 55.0% | |
| CCTGACTTAGGCACTTAGGG+AGG | + | chr3_4:42366254-42366273 | None:intergenic | 55.0% | |
| CCTCCCTAAGTGCCTAAGTC+AGG | - | chr3_4:42366251-42366270 | Msa0501320:intron | 55.0% | |
| AAGCCTCGAAACGCACTCAC+AGG | + | chr3_4:42366777-42366796 | None:intergenic | 55.0% | |
| GTTCCTTGAAGAGGTAGCCC+TGG | - | chr3_4:42367472-42367491 | Msa0501320:intron | 55.0% | |
| AACCCAGGGCTACCTCTTCA+AGG | + | chr3_4:42367478-42367497 | None:intergenic | 55.0% | |
| TATGGGGGTGGGACCTTAGT+TGG | - | chr3_4:42367964-42367983 | Msa0501320:intron | 55.0% | |
| ATGGGGGTGGGACCTTAGTT+GGG | - | chr3_4:42367965-42367984 | Msa0501320:intron | 55.0% | |
| !! | TCAGGGATGCTCTGAAGTGC+AGG | + | chr3_4:42369207-42369226 | None:intergenic | 55.0% |
| GGACATGAGGGAGTTGAGGG+TGG | - | chr3_4:42360573-42360592 | Msa0501320:CDS | 60.0% | |
| !! | AGCTCGAGCACTGGGGATTC+AGG | - | chr3_4:42361812-42361831 | Msa0501320:intron | 60.0% |
| GGGAGCAGCCGACATAGTAG+TGG | + | chr3_4:42364465-42364484 | None:intergenic | 60.0% | |
| ! | AATGCACTCTCGGGGTGCCT+AGG | - | chr3_4:42366730-42366749 | Msa0501320:intron | 60.0% |
| ACGAGCATGGCCATGTGCCT+AGG | + | chr3_4:42366750-42366769 | None:intergenic | 60.0% | |
| TAGGCACATGGCCATGCTCG+TGG | - | chr3_4:42366749-42366768 | Msa0501320:intron | 60.0% | |
| ACTCACAGGCACCACGAGCA+TGG | + | chr3_4:42366763-42366782 | None:intergenic | 60.0% | |
| GTGCCTGTGAGTGCGTTTCG+AGG | - | chr3_4:42366771-42366790 | Msa0501320:intron | 60.0% | |
| TGGGGGTGGGACCTTAGTTG+GGG | - | chr3_4:42367966-42367985 | Msa0501320:intron | 60.0% | |
| GCATGGGCGGTTTCAAGGCC+CGG | + | chr3_4:42361604-42361623 | None:intergenic | 65.0% | |
| ! | CAGAGCGTCTGGCTCCTCCT+CGG | - | chr3_4:42366678-42366697 | Msa0501320:intron | 65.0% |
| ! | AGAGCGTCTGGCTCCTCCTC+GGG | - | chr3_4:42366679-42366698 | Msa0501320:intron | 65.0% |
| ATGCACTCTCATGCGCCCCG+AGG | + | chr3_4:42366698-42366717 | None:intergenic | 65.0% | |
| ! | TCTCGGGGTGCCTAGGCACA+TGG | - | chr3_4:42366737-42366756 | Msa0501320:intron | 65.0% |
| GGCAGTTGCCCGACGAGCCT+GGG | + | chr3_4:42361573-42361592 | None:intergenic | 70.0% | |
| AGGCTCGTCGGGCAACTGCC+CGG | - | chr3_4:42361573-42361592 | Msa0501320:intron | 70.0% | |
| TTTCAAGGCCCGGCGAGCCC+GGG | + | chr3_4:42361594-42361613 | None:intergenic | 70.0% | |
| GTTTCAAGGCCCGGCGAGCC+CGG | + | chr3_4:42361595-42361614 | None:intergenic | 70.0% | |
| ! | GAGCGTCTGGCTCCTCCTCG+GGG | - | chr3_4:42366680-42366699 | Msa0501320:intron | 70.0% |
| CACTCTCATGCGCCCCGAGG+AGG | + | chr3_4:42366695-42366714 | None:intergenic | 70.0% | |
| ACGAGCCTGGGCAGTCGCCC+GGG | + | chr3_4:42361561-42361580 | None:intergenic | 75.0% | |
| GACGAGCCTGGGCAGTCGCC+CGG | + | chr3_4:42361562-42361581 | None:intergenic | 75.0% | |
| GGGCGACTGCCCAGGCTCGT+CGG | - | chr3_4:42361561-42361580 | Msa0501320:intron | 75.0% | |
| GGCGACTGCCCAGGCTCGTC+GGG | - | chr3_4:42361562-42361581 | Msa0501320:intron | 75.0% | |
| GGGCAGTTGCCCGACGAGCC+TGG | + | chr3_4:42361574-42361593 | None:intergenic | 75.0% | |
| GGCTCGTCGGGCAACTGCCC+GGG | - | chr3_4:42361574-42361593 | Msa0501320:intron | 75.0% | |
| ! | CTGGGCAGTCGCCCGGGCTC+TGG | + | chr3_4:42361555-42361574 | None:intergenic | 80.0% |
| ! | CAGAGCCCGGGCGACTGCCC+AGG | - | chr3_4:42361553-42361572 | Msa0501320:intron | 80.0% |
| ! | GGGCAACTGCCCGGGCTCGC+CGG | - | chr3_4:42361582-42361601 | Msa0501320:intron | 80.0% |
| ! | GGCAACTGCCCGGGCTCGCC+GGG | - | chr3_4:42361583-42361602 | Msa0501320:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 42360391 | 42369236 | 42360391 | ID=Msa0501320;Name=Msa0501320 |
| chr3_4 | mRNA | 42360391 | 42369236 | 42360391 | ID=Msa0501320-mRNA-1;Parent=Msa0501320;Name=Msa0501320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0|0|2|0|165 |
| chr3_4 | exon | 42369027 | 42369236 | 42369027 | ID=Msa0501320-mRNA-1:exon:8917;Parent=Msa0501320-mRNA-1 |
| chr3_4 | exon | 42360391 | 42360678 | 42360391 | ID=Msa0501320-mRNA-1:exon:8916;Parent=Msa0501320-mRNA-1 |
| chr3_4 | CDS | 42369027 | 42369236 | 42369027 | ID=Msa0501320-mRNA-1:cds;Parent=Msa0501320-mRNA-1 |
| chr3_4 | CDS | 42360391 | 42360678 | 42360391 | ID=Msa0501320-mRNA-1:cds;Parent=Msa0501320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
