Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161070 | sp|Q9CY45|EFMT1_MOUSE | 46.890 | 209 | 104 | 4 | 16 | 222 | 4 | 207 | 4.92e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161070 | A0A072VIU1 | 97.414 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 6.61e-167 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000590 | Msa0161070 | -0.840447 | 8.648433e-58 | -8.615850e-47 |
| Msa0017320 | Msa0161070 | -0.800596 | 1.338150e-48 | -8.615850e-47 |
| Msa0036370 | Msa0161070 | -0.801049 | 1.081729e-48 | -8.615850e-47 |
| Msa0038870 | Msa0161070 | -0.801095 | 1.058257e-48 | -8.615850e-47 |
| Msa0072170 | Msa0161070 | -0.813529 | 2.444843e-51 | -8.615850e-47 |
| Msa0085720 | Msa0161070 | -0.808231 | 3.428504e-50 | -8.615850e-47 |
| Msa0092440 | Msa0161070 | -0.802735 | 4.872060e-49 | -8.615850e-47 |
| Msa0119320 | Msa0161070 | -0.809779 | 1.598306e-50 | -8.615850e-47 |
| Msa0126230 | Msa0161070 | -0.804993 | 1.654310e-49 | -8.615850e-47 |
| Msa0144620 | Msa0161070 | -0.811099 | 8.292375e-51 | -8.615850e-47 |
| Msa0161070 | Msa0195330 | -0.802648 | 5.077444e-49 | -8.615850e-47 |
| Msa0161070 | Msa0212750 | 0.827147 | 1.836798e-54 | -8.615850e-47 |
| Msa0161070 | Msa0219100 | -0.804573 | 2.024989e-49 | -8.615850e-47 |
| Msa0161070 | Msa0221600 | -0.805275 | 1.444256e-49 | -8.615850e-47 |
| Msa0161070 | Msa0229360 | -0.801159 | 1.026726e-48 | -8.615850e-47 |
| Msa0161070 | Msa0239940 | -0.820093 | 8.229246e-53 | -8.615850e-47 |
| Msa0161070 | Msa0241740 | -0.824381 | 8.323158e-54 | -8.615850e-47 |
| Msa0161070 | Msa0265160 | -0.817404 | 3.356356e-52 | -8.615850e-47 |
| Msa0161070 | Msa0277420 | -0.808206 | 3.470501e-50 | -8.615850e-47 |
| Msa0161070 | Msa0289400 | -0.826004 | 3.441947e-54 | -8.615850e-47 |
| Msa0161070 | Msa0308200 | -0.816283 | 5.989629e-52 | -8.615850e-47 |
| Msa0161070 | Msa0308220 | -0.803856 | 2.854986e-49 | -8.615850e-47 |
| Msa0161070 | Msa0327410 | -0.800735 | 1.253628e-48 | -8.615850e-47 |
| Msa0161070 | Msa0342290 | -0.807841 | 4.150794e-50 | -8.615850e-47 |
| Msa0161070 | Msa0394690 | -0.817206 | 3.718474e-52 | -8.615850e-47 |
| Msa0161070 | Msa0501320 | -0.800938 | 1.139651e-48 | -8.615850e-47 |
| Msa0161070 | Msa0534410 | -0.803341 | 3.650778e-49 | -8.615850e-47 |
| Msa0161070 | Msa0537770 | -0.806605 | 7.586325e-50 | -8.615850e-47 |
| Msa0161070 | Msa0555640 | -0.811748 | 5.994755e-51 | -8.615850e-47 |
| Msa0161070 | Msa0573040 | -0.820191 | 7.813811e-53 | -8.615850e-47 |
| Msa0161070 | Msa0578090 | -0.805327 | 1.408109e-49 | -8.615850e-47 |
| Msa0161070 | Msa0585650 | 0.826072 | 3.316192e-54 | -8.615850e-47 |
| Msa0161070 | Msa0587190 | -0.804104 | 2.535833e-49 | -8.615850e-47 |
| Msa0161070 | Msa0588220 | -0.816608 | 5.065282e-52 | -8.615850e-47 |
| Msa0161070 | Msa0617260 | -0.839342 | 1.678233e-57 | -8.615850e-47 |
| Msa0161070 | Msa0619180 | -0.811545 | 6.636235e-51 | -8.615850e-47 |
| Msa0161070 | Msa0625840 | 0.801317 | 9.533172e-49 | -8.615850e-47 |
| Msa0161070 | Msa0628290 | -0.806250 | 9.009714e-50 | -8.615850e-47 |
| Msa0161070 | Msa0630950 | -0.800564 | 1.358632e-48 | -8.615850e-47 |
| Msa0161070 | Msa0653320 | 0.803984 | 2.684769e-49 | -8.615850e-47 |
| Msa0161070 | Msa0679550 | -0.812066 | 5.110613e-51 | -8.615850e-47 |
| Msa0161070 | Msa0700230 | -0.829555 | 4.820866e-55 | -8.615850e-47 |
| Msa0161070 | Msa0716970 | -0.801301 | 9.606998e-49 | -8.615850e-47 |
| Msa0161070 | Msa0724950 | -0.802309 | 5.963081e-49 | -8.615850e-47 |
| Msa0161070 | Msa0743530 | -0.806401 | 8.373648e-50 | -8.615850e-47 |
| Msa0161070 | Msa0776750 | -0.808340 | 3.250390e-50 | -8.615850e-47 |
| Msa0161070 | Msa0795660 | -0.807405 | 5.136731e-50 | -8.615850e-47 |
| Msa0161070 | Msa0820530 | 0.827487 | 1.522553e-54 | -8.615850e-47 |
| Msa0161070 | Msa0866400 | -0.805370 | 1.379224e-49 | -8.615850e-47 |
| Msa0161070 | Msa0870650 | -0.808732 | 2.679949e-50 | -8.615850e-47 |
| Msa0161070 | Msa0945120 | -0.800135 | 1.660885e-48 | -8.615850e-47 |
| Msa0161070 | Msa0965020 | -0.811446 | 6.971362e-51 | -8.615850e-47 |
| Msa0161070 | Msa0996020 | -0.806597 | 7.616121e-50 | -8.615850e-47 |
| Msa0161070 | Msa1036740 | -0.812080 | 5.074659e-51 | -8.615850e-47 |
| Msa0161070 | Msa1044350 | -0.817036 | 4.061779e-52 | -8.615850e-47 |
| Msa0161070 | Msa1096550 | -0.801003 | 1.105060e-48 | -8.615850e-47 |
| Msa0161070 | Msa1113590 | -0.827373 | 1.621185e-54 | -8.615850e-47 |
| Msa0161070 | Msa1122780 | -0.804362 | 2.240119e-49 | -8.615850e-47 |
| Msa0161070 | Msa1133570 | -0.803336 | 3.660152e-49 | -8.615850e-47 |
| Msa0161070 | Msa1144970 | -0.810435 | 1.154168e-50 | -8.615850e-47 |
| Msa0161070 | Msa1168550 | -0.805432 | 1.339053e-49 | -8.615850e-47 |
| Msa0161070 | Msa1168590 | -0.822323 | 2.518542e-53 | -8.615850e-47 |
| Msa0161070 | Msa1174310 | -0.838247 | 3.221529e-57 | -8.615850e-47 |
| Msa0161070 | Msa1176270 | -0.800614 | 1.326807e-48 | -8.615850e-47 |
| Msa0161070 | Msa1176360 | -0.813926 | 1.999118e-51 | -8.615850e-47 |
| Msa0161070 | Msa1181170 | 0.812400 | 4.321094e-51 | -8.615850e-47 |
| Msa0161070 | Msa1211050 | 0.801457 | 8.924916e-49 | -8.615850e-47 |
| Msa0161070 | Msa1235400 | -0.816477 | 5.420004e-52 | -8.615850e-47 |
| Msa0161070 | Msa1236390 | -0.833389 | 5.485957e-56 | -8.615850e-47 |
| Msa0161070 | Msa1253810 | -0.807990 | 3.859264e-50 | -8.615850e-47 |
| Msa0161070 | Msa1270660 | -0.800866 | 1.178997e-48 | -8.615850e-47 |
| Msa0161070 | Msa1288510 | -0.806830 | 6.797265e-50 | -8.615850e-47 |
| Msa0161070 | Msa1296300 | -0.825563 | 4.377523e-54 | -8.615850e-47 |
| Msa0161070 | Msa1314770 | -0.818600 | 1.800793e-52 | -8.615850e-47 |
| Msa0161070 | Msa1320820 | -0.814479 | 1.508422e-51 | -8.615850e-47 |
| Msa0161070 | Msa1329800 | -0.837711 | 4.422905e-57 | -8.615850e-47 |
| Msa0161070 | Msa1335710 | -0.810925 | 9.043591e-51 | -8.615850e-47 |
| Msa0161070 | Msa1338250 | -0.820815 | 5.618668e-53 | -8.615850e-47 |
| Msa0161070 | Msa1393800 | -0.813124 | 2.999554e-51 | -8.615850e-47 |
| Msa0161070 | Msa1400070 | -0.800397 | 1.468854e-48 | -8.615850e-47 |
| Msa0161070 | Msa1416260 | -0.805170 | 1.519412e-49 | -8.615850e-47 |
| Msa0161070 | Msa1417810 | 0.804028 | 2.628703e-49 | -8.615850e-47 |
| Msa0161070 | Msa1422840 | -0.813178 | 2.918937e-51 | -8.615850e-47 |
| Msa0161070 | Msa1443610 | -0.805431 | 1.339315e-49 | -8.615850e-47 |
| Msa0161070 | Msa1445220 | -0.802473 | 5.517508e-49 | -8.615850e-47 |
| Msa0161070 | Msa1445400 | 0.804464 | 2.133094e-49 | -8.615850e-47 |
| Msa0161070 | Msa1449350 | 0.815352 | 9.659458e-52 | -8.615850e-47 |
| Msa0161070 | Msa1458030 | -0.803273 | 3.771721e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161070 | MtrunA17_Chr1g0176271 | 97.414 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 1.27e-170 | 469 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161070 | AT3G58470.1 | 65.179 | 224 | 70 | 1 | 17 | 232 | 23 | 246 | 1.19e-104 | 303 |
Find 65 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCCTCCTAGTCTCGTTTC+AGG | 0.182132 | 1_4:+35238856 | None:intergenic |
| CTGAGTTCGGTCACCGAGTT+AGG | 0.249256 | 1_4:+35242535 | None:intergenic |
| ATCTGTAAGAAGTTCAATTT+AGG | 0.301564 | 1_4:-35238782 | Msa0161070:three_prime_UTR |
| AAATTCATTTCCAAGTTTAC+TGG | 0.322537 | 1_4:+35238900 | None:intergenic |
| GTAAACTTGGAAATGAATTT+CGG | 0.334237 | 1_4:-35238897 | Msa0161070:CDS |
| GTAATAGAGCAAAGAGTGTT+TGG | 0.346510 | 1_4:-35239179 | Msa0161070:intron |
| TTTCTCTTGTATCTGAAGAT+TGG | 0.354043 | 1_4:-35242402 | Msa0161070:CDS |
| GAGATTGAGATAACTCAAAT+TGG | 0.381953 | 1_4:+35238754 | None:intergenic |
| AGAAAGTGCAGCTGAGATCT+TGG | 0.397121 | 1_4:-35238956 | Msa0161070:CDS |
| CTCTTGTATCTGAAGATTGG+AGG | 0.401072 | 1_4:-35242399 | Msa0161070:CDS |
| CCCCATCACTCCAGTAAACT+TGG | 0.404382 | 1_4:-35238910 | Msa0161070:CDS |
| AATTCTGATGGTAACTCCTC+GGG | 0.411885 | 1_4:+35240459 | None:intergenic |
| AGTTGCTGATCCTCCTTACT+TGG | 0.418036 | 1_4:-35240415 | Msa0161070:intron |
| CTGGATCGGACGGTCGGGTC+GGG | 0.419165 | 1_4:+35242629 | None:intergenic |
| AGAAGTTGCACAGACACATT+AGG | 0.425494 | 1_4:+35240543 | None:intergenic |
| ATTGGAGGCTGAGTCAGTTC+TGG | 0.433675 | 1_4:-35242384 | Msa0161070:CDS |
| GAAAGTGCAGCTGAGATCTT+GGG | 0.436708 | 1_4:-35238955 | Msa0161070:CDS |
| TGTTTGTTTGTGTAGGATGA+TGG | 0.440267 | 1_4:+35242581 | None:intergenic |
| AAGAGTAGGACAAGCAATAC+AGG | 0.446629 | 1_4:+35242285 | None:intergenic |
| ATCAGCAACTATAACTTTGT+AGG | 0.456992 | 1_4:+35240428 | None:intergenic |
| AGAGCATGGGAGCTTAGAAC+TGG | 0.467076 | 1_4:+35242496 | None:intergenic |
| TCCAAGTTTACTGGAGTGAT+GGG | 0.468152 | 1_4:+35238909 | None:intergenic |
| CAATTAACTCTCACCAAGTA+AGG | 0.472488 | 1_4:+35240402 | None:intergenic |
| TTCCAAGTTTACTGGAGTGA+TGG | 0.474264 | 1_4:+35238908 | None:intergenic |
| ACCCTCCTAGTCTCGTTTCA+GGG | 0.482824 | 1_4:+35238857 | None:intergenic |
| TTTGGACTGGATCGGACGGT+CGG | 0.483318 | 1_4:+35242623 | None:intergenic |
| TAGGAATTCTTCAATTCTGA+TGG | 0.493195 | 1_4:+35240447 | None:intergenic |
| CAATTCTGATGGTAACTCCT+CGG | 0.493389 | 1_4:+35240458 | None:intergenic |
| TGCAAAGACAGTTGCTGAAG+AGG | 0.497317 | 1_4:-35242347 | Msa0161070:CDS |
| CTCGGAGAGAAACTCTTTGA+GGG | 0.500838 | 1_4:+35242468 | None:intergenic |
| GCTCGGAGAGAAACTCTTTG+AGG | 0.503838 | 1_4:+35242467 | None:intergenic |
| ATCGGAGTGACTCTGCTGCT+CGG | 0.508122 | 1_4:+35242450 | None:intergenic |
| CTTTGAGGGCGGAGAGAGCA+TGG | 0.509962 | 1_4:+35242482 | None:intergenic |
| TTGGACTGGATCGGACGGTC+GGG | 0.513147 | 1_4:+35242624 | None:intergenic |
| GTTTGTTTGTGTAGGATGAT+GGG | 0.514202 | 1_4:+35242582 | None:intergenic |
| AGAGTTGTCTCCTGTGGCAT+CGG | 0.521374 | 1_4:+35242432 | None:intergenic |
| TGATGGGAGGCCAAAATGAA+TGG | 0.530136 | 1_4:+35242598 | None:intergenic |
| TACTCTTTATGCTTATCTCA+AGG | 0.531204 | 1_4:-35242269 | Msa0161070:intron |
| ACTGGATCGGACGGTCGGGT+CGG | 0.531886 | 1_4:+35242628 | None:intergenic |
| TGAGTTCGGTCACCGAGTTA+GGG | 0.532644 | 1_4:+35242536 | None:intergenic |
| GTTCTTACTCTTTGCAGCAA+TGG | 0.535294 | 1_4:-35242325 | Msa0161070:CDS |
| ATCTTGGGCTTGCATCCTTG+TGG | 0.539758 | 1_4:-35238940 | Msa0161070:CDS |
| CAGAGTCACTCCGATGCCAC+AGG | 0.563264 | 1_4:-35242442 | Msa0161070:CDS |
| GTCGTCGTCTTCACTGAGTT+CGG | 0.564801 | 1_4:+35242522 | None:intergenic |
| ATTGAGATAACTCAAATTGG+TGG | 0.565088 | 1_4:+35238757 | None:intergenic |
| GACCCTGAAACGAGACTAGG+AGG | 0.585476 | 1_4:-35238859 | Msa0161070:CDS |
| TTTGCACATACAAATCATTG+TGG | 0.601254 | 1_4:+35238685 | None:intergenic |
| TTGAGATAAGCATAAAGAGT+AGG | 0.602145 | 1_4:+35242271 | None:intergenic |
| TTCATCAGAGTTGTCTCCTG+TGG | 0.604124 | 1_4:+35242426 | None:intergenic |
| ACTCGAACTGAACCCTAACT+CGG | 0.604207 | 1_4:-35242548 | Msa0161070:CDS |
| CTGAAACGAGACTAGGAGGG+TGG | 0.610153 | 1_4:-35238855 | Msa0161070:CDS |
| TCCGCCATGTTTGTTTGTGT+AGG | 0.612521 | 1_4:+35242574 | None:intergenic |
| TTTGAGGGCGGAGAGAGCAT+GGG | 0.614954 | 1_4:+35242483 | None:intergenic |
| TGTTTGTGTAGGATGATGGG+AGG | 0.633241 | 1_4:+35242585 | None:intergenic |
| CCAAGTTTACTGGAGTGATG+GGG | 0.636163 | 1_4:+35238910 | None:intergenic |
| TTAACTCTCACCAAGTAAGG+AGG | 0.640995 | 1_4:+35240405 | None:intergenic |
| TCATCCTACACAAACAAACA+TGG | 0.641398 | 1_4:-35242578 | Msa0161070:exon |
| TATGACCCTGAAACGAGACT+AGG | 0.648626 | 1_4:-35238862 | Msa0161070:CDS |
| TGAAACGAGACTAGGAGGGT+GGG | 0.648782 | 1_4:-35238854 | Msa0161070:CDS |
| GGAGAGAAACTCTTTGAGGG+CGG | 0.677392 | 1_4:+35242471 | None:intergenic |
| ATTCTGATGGTAACTCCTCG+GGG | 0.683850 | 1_4:+35240460 | None:intergenic |
| ACCCTGAAACGAGACTAGGA+GGG | 0.699962 | 1_4:-35238858 | Msa0161070:CDS |
| TGATGGGGTCTAAAACCACA+AGG | 0.707023 | 1_4:+35238925 | None:intergenic |
| TCCTACACAAACAAACATGG+CGG | 0.735451 | 1_4:-35242575 | Msa0161070:exon |
| CTATGACTACAATCACCCCG+AGG | 0.797637 | 1_4:-35240475 | Msa0161070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGTTATATTTTTAGTT+TGG | - | chr1_4:35241343-35241362 | Msa0161070:intron | 10.0% |
| !! | ATATATAAAGGAAAAATGTT+TGG | - | chr1_4:35239601-35239620 | Msa0161070:intron | 15.0% |
| !! | TTTATTGCTAATTATTGTTT+AGG | - | chr1_4:35239806-35239825 | Msa0161070:intron | 15.0% |
| !! | TTATTGCTAATTATTGTTTA+GGG | - | chr1_4:35239807-35239826 | Msa0161070:intron | 15.0% |
| !! | AATATATAAGGAAAAATGTT+TGG | - | chr1_4:35240212-35240231 | Msa0161070:intron | 15.0% |
| !! | TTTATTGCTAATTATTGTTT+AGG | - | chr1_4:35239806-35239825 | Msa0161070:intron | 15.0% |
| !! | TTATTGCTAATTATTGTTTA+GGG | - | chr1_4:35239807-35239826 | Msa0161070:intron | 15.0% |
| !!! | TATTTTCAATTTTCAGAAAA+TGG | - | chr1_4:35240737-35240756 | Msa0161070:intron | 15.0% |
| !!! | TAATTTTACCTACTTTAATT+TGG | - | chr1_4:35240929-35240948 | Msa0161070:intron | 15.0% |
| !! | ATTAACTGAATAAAGATATA+AGG | + | chr1_4:35241061-35241080 | None:intergenic | 15.0% |
| !!! | TTTTTGATGTCAAATTTAAA+AGG | - | chr1_4:35241518-35241537 | Msa0161070:intron | 15.0% |
| !!! | TTTTGATGTCAAATTTAAAA+GGG | - | chr1_4:35241519-35241538 | Msa0161070:intron | 15.0% |
| !!! | TCAATAAATTTTGTAAAGAT+GGG | + | chr1_4:35241613-35241632 | None:intergenic | 15.0% |
| !!! | ATTTTAGCAATTCTTTATAT+TGG | + | chr1_4:35242279-35242298 | None:intergenic | 15.0% |
| !! | TTCACTAAGGAAATATATAA+AGG | - | chr1_4:35239589-35239608 | Msa0161070:intron | 20.0% |
| !!! | TTTTTCCTTATATATTTCCT+TGG | + | chr1_4:35240208-35240227 | None:intergenic | 20.0% |
| !! | TCAAAATCATTCTTACAATT+TGG | + | chr1_4:35240706-35240725 | None:intergenic | 20.0% |
| !!! | GATTTTGCTATTTTGAATAT+TGG | - | chr1_4:35241086-35241105 | Msa0161070:intron | 20.0% |
| !!! | TCTTTTCTTCTATTTTTGAA+AGG | - | chr1_4:35241384-35241403 | Msa0161070:intron | 20.0% |
| !! | TAAATTTGACATCAAAAAAG+AGG | + | chr1_4:35241516-35241535 | None:intergenic | 20.0% |
| !!! | AAAAGGGCATATATTTATTT+TGG | - | chr1_4:35241535-35241554 | Msa0161070:intron | 20.0% |
| !!! | GTCAATAAATTTTGTAAAGA+TGG | + | chr1_4:35241614-35241633 | None:intergenic | 20.0% |
| !! | GAAAAAAAATACAATAGATG+AGG | + | chr1_4:35241672-35241691 | None:intergenic | 20.0% |
| !! | AGCAAAAAGAAATATAAAGA+AGG | + | chr1_4:35241859-35241878 | None:intergenic | 20.0% |
| !!! | GTTATTGCTTTTGTTTCAAT+AGG | - | chr1_4:35239074-35239093 | Msa0161070:intron | 25.0% |
| ! | TCTTAAATTATTATCGCTGT+CGG | - | chr1_4:35239226-35239245 | Msa0161070:intron | 25.0% |
| ! | GATAAAAATAGAGAGAAAGA+GGG | - | chr1_4:35239482-35239501 | Msa0161070:intron | 25.0% |
| ! | ATAGAGATAAGAGAAAATGA+TGG | - | chr1_4:35239659-35239678 | Msa0161070:intron | 25.0% |
| ! | TAGAGATAAGAGAAAATGAT+GGG | - | chr1_4:35239660-35239679 | Msa0161070:intron | 25.0% |
| ! | CTAATACCATCTTGAAATTT+GGG | + | chr1_4:35239914-35239933 | None:intergenic | 25.0% |
| ! | ACTAATACCATCTTGAAATT+TGG | + | chr1_4:35239915-35239934 | None:intergenic | 25.0% |
| !!! | TAGTGCTTTTAAAGATTTGT+TGG | - | chr1_4:35239931-35239950 | Msa0161070:intron | 25.0% |
| !!! | AGTGCTTTTAAAGATTTGTT+GGG | - | chr1_4:35239932-35239951 | Msa0161070:intron | 25.0% |
| ! | TTTCTCTCATTCTTACAATT+TGG | + | chr1_4:35240092-35240111 | None:intergenic | 25.0% |
| ! | GAGAGAGATAAAATTAAATG+AGG | - | chr1_4:35240303-35240322 | Msa0161070:intron | 25.0% |
| ! | TCTTTAATTGCATGATATAG+TGG | - | chr1_4:35239783-35239802 | Msa0161070:intron | 25.0% |
| ! | AGAAGTGGAAGTAAAATAAA+AGG | + | chr1_4:35240977-35240996 | None:intergenic | 25.0% |
| !!! | CAATCTTATGTTTTTTCTCT+AGG | - | chr1_4:35241017-35241036 | Msa0161070:intron | 25.0% |
| !!! | TTTTTTCTCTAGGTGAAAAA+TGG | - | chr1_4:35241027-35241046 | Msa0161070:intron | 25.0% |
| ! | AGTGTATATGTAAGCATATA+AGG | + | chr1_4:35241208-35241227 | None:intergenic | 25.0% |
| ! | GCATTAGTCATGAAAAATTT+AGG | + | chr1_4:35241433-35241452 | None:intergenic | 25.0% |
| !! | CTGTTACTTGTAATTAGAAA+AGG | + | chr1_4:35241696-35241715 | None:intergenic | 25.0% |
| !! | CTTTTCTAATTACAAGTAAC+AGG | - | chr1_4:35241694-35241713 | Msa0161070:intron | 25.0% |
| ! | AATTACAAGTAACAGGATTA+TGG | - | chr1_4:35241701-35241720 | Msa0161070:intron | 25.0% |
| ! | ATTACAAGTAACAGGATTAT+GGG | - | chr1_4:35241702-35241721 | Msa0161070:intron | 25.0% |
| !! | AACATAGCATTCTTTTTATC+TGG | + | chr1_4:35241821-35241840 | None:intergenic | 25.0% |
| ! | AAGAAAAGTTCCTTCAAAAT+CGG | - | chr1_4:35241989-35242008 | Msa0161070:intron | 25.0% |
| ! | TCTCATTATTCTAATTGCTT+TGG | - | chr1_4:35242104-35242123 | Msa0161070:intron | 25.0% |
| ! | TGTAAAATTGAATACAACCT+TGG | - | chr1_4:35242298-35242317 | Msa0161070:CDS | 25.0% |
| ! | GTAAAATTGAATACAACCTT+GGG | - | chr1_4:35242299-35242318 | Msa0161070:CDS | 25.0% |
| ! | AAATTCATTTCCAAGTTTAC+TGG | + | chr1_4:35242408-35242427 | None:intergenic | 25.0% |
| ! | GTAAACTTGGAAATGAATTT+CGG | - | chr1_4:35242408-35242427 | Msa0161070:CDS | 25.0% |
| ! | ATCTGTAAGAAGTTCAATTT+AGG | - | chr1_4:35242523-35242542 | Msa0161070:CDS | 25.0% |
| !! | AAAATGAATGGTTTTTGGAC+TGG | + | chr1_4:35238698-35238717 | None:intergenic | 30.0% |
| ! | AGTCCAAAAACCATTCATTT+TGG | - | chr1_4:35238697-35238716 | Msa0161070:three_prime_UTR | 30.0% |
| TTTCTCTTGTATCTGAAGAT+TGG | - | chr1_4:35238903-35238922 | Msa0161070:CDS | 30.0% | |
| TTGAGATAAGCATAAAGAGT+AGG | + | chr1_4:35239037-35239056 | None:intergenic | 30.0% | |
| TACTCTTTATGCTTATCTCA+AGG | - | chr1_4:35239036-35239055 | Msa0161070:intron | 30.0% | |
| CAAAAGCAATAACAGAAATG+AGG | + | chr1_4:35239067-35239086 | None:intergenic | 30.0% | |
| TTTGTTTCAATAGGTCTGTT+TGG | - | chr1_4:35239083-35239102 | Msa0161070:intron | 30.0% | |
| TTCAGTCTAATCATATGTGA+CGG | + | chr1_4:35239195-35239214 | None:intergenic | 30.0% | |
| TTCACTTATTTCCATACTCT+CGG | + | chr1_4:35239349-35239368 | None:intergenic | 30.0% | |
| ! | AACAAACTCTTGACCATTTT+TGG | - | chr1_4:35239431-35239450 | Msa0161070:intron | 30.0% |
| !! | ACAAACTCTTGACCATTTTT+GGG | - | chr1_4:35239432-35239451 | Msa0161070:intron | 30.0% |
| GGATAAAAATAGAGAGAAAG+AGG | - | chr1_4:35239481-35239500 | Msa0161070:intron | 30.0% | |
| AGAGATTAAGAACACAATGT+GGG | - | chr1_4:35239511-35239530 | Msa0161070:intron | 30.0% | |
| GTACAAATATCACTTCACTA+AGG | - | chr1_4:35239576-35239595 | Msa0161070:intron | 30.0% | |
| AGAGAGATAGAGATAAAATG+AGG | - | chr1_4:35239689-35239708 | Msa0161070:intron | 30.0% | |
| !! | TCAGTGTTGACTATAATACA+AGG | - | chr1_4:35239750-35239769 | Msa0161070:intron | 30.0% |
| TAAACACTCCAATCCAATTT+GGG | + | chr1_4:35239834-35239853 | None:intergenic | 30.0% | |
| ATAAACACTCCAATCCAATT+TGG | + | chr1_4:35239835-35239854 | None:intergenic | 30.0% | |
| ATTGTAAGAATGAGAGAAAG+AGG | - | chr1_4:35240093-35240112 | Msa0161070:intron | 30.0% | |
| TTGTAAGAATGAGAGAAAGA+GGG | - | chr1_4:35240094-35240113 | Msa0161070:intron | 30.0% | |
| AGAGATTAAGAACACAATGT+GGG | - | chr1_4:35239511-35239530 | Msa0161070:intron | 30.0% | |
| CTTCTCCAAGGAAATATATA+AGG | - | chr1_4:35240200-35240219 | Msa0161070:intron | 30.0% | |
| !! | TCAGTGTTGACTATAATACA+AGG | - | chr1_4:35239750-35239769 | Msa0161070:intron | 30.0% |
| CTAACTAAATTCTACGAAAC+CGG | + | chr1_4:35240499-35240518 | None:intergenic | 30.0% | |
| CCAATACCATCTTGAAATTT+GGG | + | chr1_4:35240528-35240547 | None:intergenic | 30.0% | |
| ACCAATACCATCTTGAAATT+TGG | + | chr1_4:35240529-35240548 | None:intergenic | 30.0% | |
| !! | TGGTGCTTTTAAAGATTTGT+TGG | - | chr1_4:35240545-35240564 | Msa0161070:CDS | 30.0% |
| !! | GGTGCTTTTAAAGATTTGTT+GGG | - | chr1_4:35240546-35240565 | Msa0161070:CDS | 30.0% |
| TAGGAATTCTTCAATTCTGA+TGG | + | chr1_4:35240861-35240880 | None:intergenic | 30.0% | |
| ATCAGCAACTATAACTTTGT+AGG | + | chr1_4:35240880-35240899 | None:intergenic | 30.0% | |
| GTATGTCACCAAATTAAAGT+AGG | + | chr1_4:35240940-35240959 | None:intergenic | 30.0% | |
| ATAAGGAGAAAAGGAAGAAA+AGG | + | chr1_4:35241302-35241321 | None:intergenic | 30.0% | |
| GCATATACTATAAGGAGAAA+AGG | + | chr1_4:35241311-35241330 | None:intergenic | 30.0% | |
| ! | CATTGACTGCATATACTATA+AGG | + | chr1_4:35241319-35241338 | None:intergenic | 30.0% |
| CATGAAAAATTTAGGAGACT+GGG | + | chr1_4:35241425-35241444 | None:intergenic | 30.0% | |
| TCATGAAAAATTTAGGAGAC+TGG | + | chr1_4:35241426-35241445 | None:intergenic | 30.0% | |
| GTGATTACAATAAACCTACA+AGG | + | chr1_4:35241749-35241768 | None:intergenic | 30.0% | |
| ATTGAGATAACTCAAATTGG+TGG | + | chr1_4:35242551-35242570 | None:intergenic | 30.0% | |
| GAGATTGAGATAACTCAAAT+TGG | + | chr1_4:35242554-35242573 | None:intergenic | 30.0% | |
| TTTGCACATACAAATCATTG+TGG | + | chr1_4:35242623-35242642 | None:intergenic | 30.0% | |
| ! | AGGCCAAAATGAATGGTTTT+TGG | + | chr1_4:35238703-35238722 | None:intergenic | 35.0% |
| GTTTGTTTGTGTAGGATGAT+GGG | + | chr1_4:35238726-35238745 | None:intergenic | 35.0% | |
| TGTTTGTTTGTGTAGGATGA+TGG | + | chr1_4:35238727-35238746 | None:intergenic | 35.0% | |
| TCATCCTACACAAACAAACA+TGG | - | chr1_4:35238727-35238746 | Msa0161070:three_prime_UTR | 35.0% | |
| TTCCTTGGATTAAATGCAAC+CGG | - | chr1_4:35239136-35239155 | Msa0161070:CDS | 35.0% | |
| GCAAAAAGTCATTATGAAGC+AGG | + | chr1_4:35239271-35239290 | None:intergenic | 35.0% | |
| ATAAATTATCGCCGAGAGTA+TGG | - | chr1_4:35239335-35239354 | Msa0161070:intron | 35.0% | |
| AGAAATGGTTGTCCCAAAAA+TGG | + | chr1_4:35239447-35239466 | None:intergenic | 35.0% | |
| ! | CATTTCTTCGCTCTTCTTTT+GGG | - | chr1_4:35239460-35239479 | Msa0161070:intron | 35.0% |
| GAGAGATTAAGAACACAATG+TGG | - | chr1_4:35239510-35239529 | Msa0161070:intron | 35.0% | |
| ! | ACGAACTTGTGACAACTTTT+GGG | + | chr1_4:35239555-35239574 | None:intergenic | 35.0% |
| ! | AACGAACTTGTGACAACTTT+TGG | + | chr1_4:35239556-35239575 | None:intergenic | 35.0% |
| TGAGGTGTAAAATGAGTGTT+AGG | - | chr1_4:35239707-35239726 | Msa0161070:intron | 35.0% | |
| ! | AATGAGTGTTAGGAAGTACA+CGG | - | chr1_4:35239717-35239736 | Msa0161070:intron | 35.0% |
| ! | TATTGTTTAGGGTCCCAAAT+TGG | - | chr1_4:35239818-35239837 | Msa0161070:intron | 35.0% |
| ! | TGGATTGGAGTGTTTATTAG+TGG | - | chr1_4:35239838-35239857 | Msa0161070:intron | 35.0% |
| ! | GGATTGGAGTGTTTATTAGT+GGG | - | chr1_4:35239839-35239858 | Msa0161070:intron | 35.0% |
| GCATCTTTCACTTTACAAAC+CGG | - | chr1_4:35239863-35239882 | Msa0161070:intron | 35.0% | |
| CTAACTCAATTCTACGAAAC+CGG | + | chr1_4:35239885-35239904 | None:intergenic | 35.0% | |
| CTTACAATTTGGTACAAACC+TGG | + | chr1_4:35240081-35240100 | None:intergenic | 35.0% | |
| GAGAGATTAAGAACACAATG+TGG | - | chr1_4:35239510-35239529 | Msa0161070:intron | 35.0% | |
| ! | ACGAACTTGTGACAACTTTT+GGG | + | chr1_4:35239555-35239574 | None:intergenic | 35.0% |
| ! | AACGAACTTGTGACAACTTT+TGG | + | chr1_4:35239556-35239575 | None:intergenic | 35.0% |
| GTACAAATATCACTTCTCCA+AGG | - | chr1_4:35240188-35240207 | Msa0161070:intron | 35.0% | |
| AATGAGTGTTACGAAGTACA+CGG | - | chr1_4:35240331-35240350 | Msa0161070:intron | 35.0% | |
| ! | TATTGTTTAGGGTCCCAAAT+TGG | - | chr1_4:35239818-35239837 | Msa0161070:intron | 35.0% |
| TAAACACTCCCATCCAATTT+GGG | + | chr1_4:35240448-35240467 | None:intergenic | 35.0% | |
| ATAAACACTCCCATCCAATT+TGG | + | chr1_4:35240449-35240468 | None:intergenic | 35.0% | |
| GCATCTTTCACTTTACAAAC+CGG | - | chr1_4:35239863-35239882 | Msa0161070:intron | 35.0% | |
| CGGTTTCGTAGAATTTAGTT+AGG | - | chr1_4:35240497-35240516 | Msa0161070:CDS | 35.0% | |
| CCCAAATTTCAAGATGGTAT+TGG | - | chr1_4:35239911-35239930 | Msa0161070:intron | 35.0% | |
| CTTACAATTTGGTACAAACC+TGG | + | chr1_4:35240081-35240100 | None:intergenic | 35.0% | |
| !! | GACAAACGTTTTGAGCAATA+TGG | - | chr1_4:35240792-35240811 | Msa0161070:intron | 35.0% |
| CAATTAACTCTCACCAAGTA+AGG | + | chr1_4:35240906-35240925 | None:intergenic | 35.0% | |
| ATTGCAAGTGCATAAACAAC+TGG | + | chr1_4:35241001-35241020 | None:intergenic | 35.0% | |
| GTACATCTCAATTCTCATGT+AGG | + | chr1_4:35241114-35241133 | None:intergenic | 35.0% | |
| TGACATTAGTGATGAGTACA+AGG | + | chr1_4:35241138-35241157 | None:intergenic | 35.0% | |
| CACTAATGTCACTACAGAAT+TGG | - | chr1_4:35241147-35241166 | Msa0161070:intron | 35.0% | |
| AATTTAGGAGACTGGGAAAT+TGG | + | chr1_4:35241418-35241437 | None:intergenic | 35.0% | |
| TCATGACTAATGCATTGTGT+TGG | - | chr1_4:35241440-35241459 | Msa0161070:intron | 35.0% | |
| AAGTAACAGGATTATGGGAT+AGG | - | chr1_4:35241707-35241726 | Msa0161070:intron | 35.0% | |
| TGCAGTTAATGACTTAAGCT+AGG | - | chr1_4:35242018-35242037 | Msa0161070:intron | 35.0% | |
| GCAGTTAATGACTTAAGCTA+GGG | - | chr1_4:35242019-35242038 | Msa0161070:intron | 35.0% | |
| !! | GTAATAGAGCAAAGAGTGTT+TGG | - | chr1_4:35242126-35242145 | Msa0161070:intron | 35.0% |
| !! | TCATTTTTGCTTCTACTCAC+AGG | - | chr1_4:35242193-35242212 | Msa0161070:intron | 35.0% |
| !! | ACCTTGGGTTTTGTAATTGT+AGG | - | chr1_4:35242314-35242333 | Msa0161070:CDS | 35.0% |
| ACCTACAATTACAAAACCCA+AGG | + | chr1_4:35242318-35242337 | None:intergenic | 35.0% | |
| !! | GAATGGTTTTTGGACTGGAT+CGG | + | chr1_4:35238693-35238712 | None:intergenic | 40.0% |
| TCCTACACAAACAAACATGG+CGG | - | chr1_4:35238730-35238749 | Msa0161070:three_prime_UTR | 40.0% | |
| CTCTTGTATCTGAAGATTGG+AGG | - | chr1_4:35238906-35238925 | Msa0161070:CDS | 40.0% | |
| GTTCTTACTCTTTGCAGCAA+TGG | - | chr1_4:35238980-35238999 | Msa0161070:intron | 40.0% | |
| AAGAGTAGGACAAGCAATAC+AGG | + | chr1_4:35239023-35239042 | None:intergenic | 40.0% | |
| ! | TAAGAAGCACGTACATTCCT+TGG | - | chr1_4:35239121-35239140 | Msa0161070:CDS | 40.0% |
| CCAAAAGAAGAGCGAAGAAA+TGG | + | chr1_4:35239462-35239481 | None:intergenic | 40.0% | |
| ! | CCATTTCTTCGCTCTTCTTT+TGG | - | chr1_4:35239459-35239478 | Msa0161070:intron | 40.0% |
| AAATAGAGAGAAAGAGGGAG+AGG | - | chr1_4:35239487-35239506 | Msa0161070:intron | 40.0% | |
| AATAGAGAGAAAGAGGGAGA+GGG | - | chr1_4:35239488-35239507 | Msa0161070:intron | 40.0% | |
| ATGTTTGGCAGACATCTCAT+TGG | - | chr1_4:35239616-35239635 | Msa0161070:intron | 40.0% | |
| TGTTTGGCAGACATCTCATT+GGG | - | chr1_4:35239617-35239636 | Msa0161070:intron | 40.0% | |
| ! | TTTAGGGTCCCAAATTGGAT+TGG | - | chr1_4:35239823-35239842 | Msa0161070:intron | 40.0% |
| CGGTTTCGTAGAATTGAGTT+AGG | - | chr1_4:35239883-35239902 | Msa0161070:intron | 40.0% | |
| GCTCAACCCAAATTTCAAGA+TGG | - | chr1_4:35239905-35239924 | Msa0161070:intron | 40.0% | |
| TATCAAGAACATAACCCACG+TGG | + | chr1_4:35239972-35239991 | None:intergenic | 40.0% | |
| TATATGTAACCTTTCGAGCC+AGG | - | chr1_4:35240060-35240079 | Msa0161070:intron | 40.0% | |
| ATGTTTGGCAGACATCTCAT+TGG | - | chr1_4:35239616-35239635 | Msa0161070:intron | 40.0% | |
| TGTTTGGCAGACATCTCATT+GGG | - | chr1_4:35239617-35239636 | Msa0161070:intron | 40.0% | |
| ! | TTTAGGGTCCCAAATTGGAT+GGG | - | chr1_4:35239823-35239842 | Msa0161070:intron | 40.0% |
| !! | TGGATGGGAGTGTTTATTAG+TGG | - | chr1_4:35240452-35240471 | Msa0161070:CDS | 40.0% |
| !! | GGATGGGAGTGTTTATTAGT+GGG | - | chr1_4:35240453-35240472 | Msa0161070:CDS | 40.0% |
| GCTCAACCCAAATTTCAAGA+TGG | - | chr1_4:35239905-35239924 | Msa0161070:intron | 40.0% | |
| ! | TATCTAGAACATAACCCACG+TGG | + | chr1_4:35240586-35240605 | None:intergenic | 40.0% |
| TATAAGTAACCTTTCGAGCC+AGG | - | chr1_4:35240674-35240693 | Msa0161070:intron | 40.0% | |
| AGAAGTTGCACAGACACATT+AGG | + | chr1_4:35240765-35240784 | None:intergenic | 40.0% | |
| AATTCTGATGGTAACTCCTC+GGG | + | chr1_4:35240849-35240868 | None:intergenic | 40.0% | |
| CAATTCTGATGGTAACTCCT+CGG | + | chr1_4:35240850-35240869 | None:intergenic | 40.0% | |
| TTAACTCTCACCAAGTAAGG+AGG | + | chr1_4:35240903-35240922 | None:intergenic | 40.0% | |
| GGAGAAAAGGAAGAAAAGGA+CGG | + | chr1_4:35241298-35241317 | None:intergenic | 40.0% | |
| ! | ATGTCTTTTCTCAGACAACC+TGG | - | chr1_4:35242166-35242185 | Msa0161070:intron | 40.0% |
| AGAAGCAAAAATGACTCTCC+AGG | + | chr1_4:35242187-35242206 | None:intergenic | 40.0% | |
| TCCAAGTTTACTGGAGTGAT+GGG | + | chr1_4:35242399-35242418 | None:intergenic | 40.0% | |
| TTCCAAGTTTACTGGAGTGA+TGG | + | chr1_4:35242400-35242419 | None:intergenic | 40.0% | |
| TGATGGGAGGCCAAAATGAA+TGG | + | chr1_4:35238710-35238729 | None:intergenic | 45.0% | |
| !! | TGTTTGTGTAGGATGATGGG+AGG | + | chr1_4:35238723-35238742 | None:intergenic | 45.0% |
| TCCGCCATGTTTGTTTGTGT+AGG | + | chr1_4:35238734-35238753 | None:intergenic | 45.0% | |
| ACTCGAACTGAACCCTAACT+CGG | - | chr1_4:35238757-35238776 | Msa0161070:three_prime_UTR | 45.0% | |
| CTCGGAGAGAAACTCTTTGA+GGG | + | chr1_4:35238840-35238859 | None:intergenic | 45.0% | |
| TTCATCAGAGTTGTCTCCTG+TGG | + | chr1_4:35238882-35238901 | None:intergenic | 45.0% | |
| TGCAAAGACAGTTGCTGAAG+AGG | - | chr1_4:35238958-35238977 | Msa0161070:CDS | 45.0% | |
| ! | CACCGGTTGCATTTAATCCA+AGG | + | chr1_4:35239141-35239160 | None:intergenic | 45.0% |
| GGATTAAATGCAACCGGTGT+CGG | - | chr1_4:35239142-35239161 | Msa0161070:CDS | 45.0% | |
| GTCATTATGAAGCAGGCACA+CGG | + | chr1_4:35239264-35239283 | None:intergenic | 45.0% | |
| TTTGTTGGGCCATCTGCTAT+CGG | - | chr1_4:35239946-35239965 | Msa0161070:intron | 45.0% | |
| TATCCAGTCTTGAACGTGAG+AGG | - | chr1_4:35239990-35240009 | Msa0161070:intron | 45.0% | |
| ATCCAGTCTTGAACGTGAGA+GGG | - | chr1_4:35239991-35240010 | Msa0161070:intron | 45.0% | |
| GGTGTGTTGAGAGTCTCATT+TGG | - | chr1_4:35240012-35240031 | Msa0161070:intron | 45.0% | |
| AGAATGAGAGAAAGAGGGAG+AGG | - | chr1_4:35240099-35240118 | Msa0161070:intron | 45.0% | |
| GAATGAGAGAAAGAGGGAGA+GGG | - | chr1_4:35240100-35240119 | Msa0161070:intron | 45.0% | |
| ! | GTTTAGGGTCCCAAATTGGA+TGG | - | chr1_4:35239822-35239841 | Msa0161070:intron | 45.0% |
| TTTGTTGGGCCATCTGCTAT+CGG | - | chr1_4:35239946-35239965 | Msa0161070:intron | 45.0% | |
| TATCCAGTCTTGAACGTGAG+AGG | - | chr1_4:35239990-35240009 | Msa0161070:intron | 45.0% | |
| ATCCAGTCTTGAACGTGAGA+GGG | - | chr1_4:35239991-35240010 | Msa0161070:intron | 45.0% | |
| GGTGTGTTGAGAGTCTCATT+TGG | - | chr1_4:35240012-35240031 | Msa0161070:intron | 45.0% | |
| ATTCTGATGGTAACTCCTCG+GGG | + | chr1_4:35240848-35240867 | None:intergenic | 45.0% | |
| AGTTGCTGATCCTCCTTACT+TGG | - | chr1_4:35240890-35240909 | Msa0161070:intron | 45.0% | |
| GCATAAACAACTGGCAGAAG+TGG | + | chr1_4:35240992-35241011 | None:intergenic | 45.0% | |
| CAGGATTATGGGATAGGAAG+TGG | - | chr1_4:35241713-35241732 | Msa0161070:intron | 45.0% | |
| ! | GTGGATATTGTCAGCCTTGT+AGG | - | chr1_4:35241732-35241751 | Msa0161070:intron | 45.0% |
| ! | TGCATTCGCTCCGATTTTGA+AGG | + | chr1_4:35242002-35242021 | None:intergenic | 45.0% |
| ! | AGAAAGTGCAGCTGAGATCT+TGG | - | chr1_4:35242349-35242368 | Msa0161070:CDS | 45.0% |
| ! | GAAAGTGCAGCTGAGATCTT+GGG | - | chr1_4:35242350-35242369 | Msa0161070:CDS | 45.0% |
| ! | TGATGGGGTCTAAAACCACA+AGG | + | chr1_4:35242383-35242402 | None:intergenic | 45.0% |
| CCAAGTTTACTGGAGTGATG+GGG | + | chr1_4:35242398-35242417 | None:intergenic | 45.0% | |
| TATGACCCTGAAACGAGACT+AGG | - | chr1_4:35242443-35242462 | Msa0161070:CDS | 45.0% | |
| ACTAGGAGGGTGGGAAAAAT+AGG | - | chr1_4:35242460-35242479 | Msa0161070:CDS | 45.0% | |
| !! | GGTTTTTGGACTGGATCGGA+CGG | + | chr1_4:35238689-35238708 | None:intergenic | 50.0% |
| TGAGTTCGGTCACCGAGTTA+GGG | + | chr1_4:35238772-35238791 | None:intergenic | 50.0% | |
| GTCGTCGTCTTCACTGAGTT+CGG | + | chr1_4:35238786-35238805 | None:intergenic | 50.0% | |
| AGAGCATGGGAGCTTAGAAC+TGG | + | chr1_4:35238812-35238831 | None:intergenic | 50.0% | |
| ! | GGAGAGAAACTCTTTGAGGG+CGG | + | chr1_4:35238837-35238856 | None:intergenic | 50.0% |
| GCTCGGAGAGAAACTCTTTG+AGG | + | chr1_4:35238841-35238860 | None:intergenic | 50.0% | |
| AGAGTTGTCTCCTGTGGCAT+CGG | + | chr1_4:35238876-35238895 | None:intergenic | 50.0% | |
| ATTGGAGGCTGAGTCAGTTC+TGG | - | chr1_4:35238921-35238940 | Msa0161070:CDS | 50.0% | |
| !! | TGACGGTGTCATTTCGTGTC+AGG | + | chr1_4:35239178-35239197 | None:intergenic | 50.0% |
| ! | TGGTACAAACCTGGCTCGAA+AGG | + | chr1_4:35240072-35240091 | None:intergenic | 50.0% |
| ! | TGGTACAAACCTGGCTCGAA+AGG | + | chr1_4:35240072-35240091 | None:intergenic | 50.0% |
| CTATGACTACAATCACCCCG+AGG | - | chr1_4:35240830-35240849 | Msa0161070:intron | 50.0% | |
| ATCTTGGGCTTGCATCCTTG+TGG | - | chr1_4:35242365-35242384 | Msa0161070:CDS | 50.0% | |
| CCCCATCACTCCAGTAAACT+TGG | - | chr1_4:35242395-35242414 | Msa0161070:CDS | 50.0% | |
| ACCCTGAAACGAGACTAGGA+GGG | - | chr1_4:35242447-35242466 | Msa0161070:CDS | 50.0% | |
| ACCCTCCTAGTCTCGTTTCA+GGG | + | chr1_4:35242451-35242470 | None:intergenic | 50.0% | |
| TGAAACGAGACTAGGAGGGT+GGG | - | chr1_4:35242451-35242470 | Msa0161070:CDS | 50.0% | |
| ! | TTTGGACTGGATCGGACGGT+CGG | + | chr1_4:35238685-35238704 | None:intergenic | 55.0% |
| CTGAGTTCGGTCACCGAGTT+AGG | + | chr1_4:35238773-35238792 | None:intergenic | 55.0% | |
| ! | TTTGAGGGCGGAGAGAGCAT+GGG | + | chr1_4:35238825-35238844 | None:intergenic | 55.0% |
| ATCGGAGTGACTCTGCTGCT+CGG | + | chr1_4:35238858-35238877 | None:intergenic | 55.0% | |
| ATTATCGCTGTCGGCGTGTC+TGG | - | chr1_4:35239235-35239254 | Msa0161070:intron | 55.0% | |
| CACCCTCTCACGTTCAAGAC+TGG | + | chr1_4:35239996-35240015 | None:intergenic | 55.0% | |
| CACCCTCTCACGTTCAAGAC+TGG | + | chr1_4:35239996-35240015 | None:intergenic | 55.0% | |
| GACCCTGAAACGAGACTAGG+AGG | - | chr1_4:35242446-35242465 | Msa0161070:CDS | 55.0% | |
| CACCCTCCTAGTCTCGTTTC+AGG | + | chr1_4:35242452-35242471 | None:intergenic | 55.0% | |
| CTGAAACGAGACTAGGAGGG+TGG | - | chr1_4:35242450-35242469 | Msa0161070:CDS | 55.0% | |
| ! | TTGGACTGGATCGGACGGTC+GGG | + | chr1_4:35238684-35238703 | None:intergenic | 60.0% |
| ! | CTTTGAGGGCGGAGAGAGCA+TGG | + | chr1_4:35238826-35238845 | None:intergenic | 60.0% |
| CAGAGTCACTCCGATGCCAC+AGG | - | chr1_4:35238863-35238882 | Msa0161070:CDS | 60.0% | |
| CCATCTGCTATCGGCCACGT+GGG | - | chr1_4:35239955-35239974 | Msa0161070:intron | 60.0% | |
| CCATCTGCTATCGGCCACGT+GGG | - | chr1_4:35239955-35239974 | Msa0161070:intron | 60.0% | |
| AGGCGACGTGTGTCCGACAC+CGG | + | chr1_4:35239158-35239177 | None:intergenic | 65.0% | |
| GCCATCTGCTATCGGCCACG+TGG | - | chr1_4:35239954-35239973 | Msa0161070:intron | 65.0% | |
| CCCACGTGGCCGATAGCAGA+TGG | + | chr1_4:35239958-35239977 | None:intergenic | 65.0% | |
| GCCATCTGCTATCGGCCACG+TGG | - | chr1_4:35239954-35239973 | Msa0161070:intron | 65.0% | |
| CCCACGTGGCCGATAGCAGA+TGG | + | chr1_4:35239958-35239977 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 35238678 | 35242649 | 35238678 | ID=Msa0161070;Name=Msa0161070 |
| chr1_4 | mRNA | 35238678 | 35242649 | 35238678 | ID=Msa0161070-mRNA-1;Parent=Msa0161070;Name=Msa0161070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=68|1|1|1|1|1|4|168|232 |
| chr1_4 | exon | 35238678 | 35238991 | 35238678 | ID=Msa0161070-mRNA-1:exon:10656;Parent=Msa0161070-mRNA-1 |
| chr1_4 | exon | 35239113 | 35239194 | 35239113 | ID=Msa0161070-mRNA-1:exon:10655;Parent=Msa0161070-mRNA-1 |
| chr1_4 | exon | 35240416 | 35240574 | 35240416 | ID=Msa0161070-mRNA-1:exon:10654;Parent=Msa0161070-mRNA-1 |
| chr1_4 | exon | 35242270 | 35242649 | 35242270 | ID=Msa0161070-mRNA-1:exon:10653;Parent=Msa0161070-mRNA-1 |
| chr1_4 | five_prime_UTR | 35242582 | 35242649 | 35242582 | ID=Msa0161070-mRNA-1:five_prime_utr;Parent=Msa0161070-mRNA-1 |
| chr1_4 | CDS | 35242270 | 35242581 | 35242270 | ID=Msa0161070-mRNA-1:cds;Parent=Msa0161070-mRNA-1 |
| chr1_4 | CDS | 35240416 | 35240574 | 35240416 | ID=Msa0161070-mRNA-1:cds;Parent=Msa0161070-mRNA-1 |
| chr1_4 | CDS | 35239113 | 35239194 | 35239113 | ID=Msa0161070-mRNA-1:cds;Parent=Msa0161070-mRNA-1 |
| chr1_4 | CDS | 35238846 | 35238991 | 35238846 | ID=Msa0161070-mRNA-1:cds;Parent=Msa0161070-mRNA-1 |
| chr1_4 | three_prime_UTR | 35238678 | 35238845 | 35238678 | ID=Msa0161070-mRNA-1:three_prime_utr;Parent=Msa0161070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
