Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501910 | XP_013459878.1 | 92.427 | 515 | 10 | 4 | 1 | 508 | 1 | 493 | 0.0 | 954 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501910 | sp|Q6K687|C3H18_ORYSJ | 57.524 | 525 | 179 | 11 | 2 | 508 | 6 | 504 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501910 | A0A072UVS7 | 92.427 | 515 | 10 | 4 | 1 | 508 | 1 | 493 | 0.0 | 954 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0501910 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385500 | Msa0501910 | 0.808492 | 3.015953e-50 | -8.615850e-47 |
| Msa0501910 | Msa0610550 | 0.817212 | 3.706368e-52 | -8.615850e-47 |
| Msa0501910 | Msa0693210 | 0.826880 | 2.127750e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501910 | MtrunA17_Chr3g0099881 | 92.427 | 515 | 10 | 4 | 1 | 508 | 1 | 493 | 0.0 | 954 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501910 | AT2G24830.1 | 52.581 | 523 | 207 | 8 | 1 | 508 | 1 | 497 | 5.58e-165 | 476 |
Find 147 sgRNAs with CRISPR-Local
Find 489 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACAGGGTTTAGGATTTA+TGG | 0.135876 | 3_4:+43665867 | Msa0501910:CDS |
| CAGCCAATGCCTTGCGGGTT+TGG | 0.170229 | 3_4:-43666464 | None:intergenic |
| GCTGGTATGCAAAATCATTT+TGG | 0.173565 | 3_4:+43661571 | Msa0501910:CDS |
| TTCCAAAATGATGGCAAATA+TGG | 0.196367 | 3_4:+43665969 | Msa0501910:CDS |
| ACCCATATTTGCCATCATTT+TGG | 0.203172 | 3_4:-43665971 | None:intergenic |
| AAATTGACTTTGCGCTTATT+TGG | 0.220999 | 3_4:+43666835 | Msa0501910:three_prime_UTR |
| AGGAATATGCCCCAACAATT+TGG | 0.235755 | 3_4:+43665599 | Msa0501910:CDS |
| TTGTTTGCCAAATGTGATTT+TGG | 0.240774 | 3_4:+43666809 | Msa0501910:three_prime_UTR |
| TGCTTGGTTTACTATATGTT+TGG | 0.268175 | 3_4:+43666782 | Msa0501910:three_prime_UTR |
| ATAATAATCTCGCACGCTTT+AGG | 0.280179 | 3_4:-43661319 | None:intergenic |
| GGAACTTGTTCAGGCAATTA+AGG | 0.282463 | 3_4:+43661274 | Msa0501910:CDS |
| AGCCAATGCCTTGCGGGTTT+GGG | 0.287929 | 3_4:-43666463 | None:intergenic |
| AGCCTAAACCCATTCCTTCT+TGG | 0.291741 | 3_4:-43665996 | None:intergenic |
| GAAGAGGAACCACAGGGTTT+AGG | 0.304634 | 3_4:+43665859 | Msa0501910:CDS |
| AAGCTGTAAGTTTGCTTGCT+TGG | 0.305901 | 3_4:+43666766 | Msa0501910:three_prime_UTR |
| ATTTGGAAGCCGTCCCTTGC+TGG | 0.320960 | 3_4:+43665616 | Msa0501910:CDS |
| CCCTTGCTGGGTCAAGCATA+TGG | 0.330283 | 3_4:+43665629 | Msa0501910:CDS |
| AGCCTCAGCCAATGCCTTGC+GGG | 0.336670 | 3_4:-43666469 | None:intergenic |
| GGAATGGGTTTAGGCTTAAC+TGG | 0.336817 | 3_4:+43666003 | Msa0501910:CDS |
| CTTCGCAAATATAGCAGTTT+CGG | 0.344490 | 3_4:-43665920 | None:intergenic |
| ATTTCATCCAAAATCACATT+TGG | 0.349389 | 3_4:-43666816 | None:intergenic |
| TTCCTCTGAGCCGCTGTAAT+CGG | 0.364138 | 3_4:-43665839 | None:intergenic |
| TGTGAAGGATTTGAAAGTTC+AGG | 0.370468 | 3_4:+43666365 | Msa0501910:CDS |
| TTGTTGGGGCATATTCCTTA+AGG | 0.375669 | 3_4:-43665594 | None:intergenic |
| GCTTGGTTTACTATATGTTT+GGG | 0.376612 | 3_4:+43666783 | Msa0501910:three_prime_UTR |
| AGACTTAAGTGCATGATCTA+AGG | 0.378035 | 3_4:-43666076 | None:intergenic |
| TGTTCAACTGACTTCCCTTA+AGG | 0.378203 | 3_4:+43665579 | Msa0501910:CDS |
| GGGACGGCTTCCAAATTGTT+GGG | 0.381328 | 3_4:-43665609 | None:intergenic |
| GGTTCACGAGGAACTTGTTC+AGG | 0.382347 | 3_4:+43661265 | Msa0501910:intron |
| TCACCTGAACCTTTACTTTG+CGG | 0.394784 | 3_4:-43666297 | None:intergenic |
| TTCATAGCAGCATCATAAAC+AGG | 0.396986 | 3_4:-43666432 | None:intergenic |
| TACCTCGAGGAGTTCGGAAT+TGG | 0.397854 | 3_4:-43659782 | None:intergenic |
| GGGTTTAGGCTTAACTGGTC+AGG | 0.398564 | 3_4:+43666008 | Msa0501910:CDS |
| TACCAAGAAGGAATGGGTTT+AGG | 0.400375 | 3_4:+43665994 | Msa0501910:CDS |
| GGTTCTAAAATTTGAACAAA+TGG | 0.407804 | 3_4:+43666386 | Msa0501910:CDS |
| TTACAACAACGATGTCGATT+TGG | 0.412824 | 3_4:+43664471 | Msa0501910:CDS |
| CTTCTTCATTGATCCATTGT+TGG | 0.414052 | 3_4:-43666274 | None:intergenic |
| ATAATTTAATAAAGTGAAGA+AGG | 0.415640 | 3_4:+43659604 | None:intergenic |
| AGGTTCAGGTGAAGGTAAAA+AGG | 0.424841 | 3_4:+43666308 | Msa0501910:CDS |
| AGGCTTAACTGGTCAGGGTA+TGG | 0.427130 | 3_4:+43666014 | Msa0501910:CDS |
| CAAATGCAAATGCAGGCATT+TGG | 0.433219 | 3_4:+43665659 | Msa0501910:CDS |
| GAAGCTTGGTGCACAAGATA+TGG | 0.438563 | 3_4:+43665759 | Msa0501910:CDS |
| TGGAAGCCATGCCTCTGGTA+TGG | 0.440011 | 3_4:-43665951 | None:intergenic |
| TGTTGGGGCATATTCCTTAA+GGG | 0.440974 | 3_4:-43665593 | None:intergenic |
| TGGTAGAACCTTCACTGGTA+TGG | 0.441015 | 3_4:-43666043 | None:intergenic |
| CCAGAGGTGGTAAGAGAAAA+CGG | 0.441799 | 3_4:+43666142 | Msa0501910:CDS |
| TGAAGATACCTCGAGGAGTT+CGG | 0.446790 | 3_4:-43659788 | None:intergenic |
| TTTATTAGCGAGAAGACATC+TGG | 0.451439 | 3_4:-43666222 | None:intergenic |
| AGGGACGGCTTCCAAATTGT+TGG | 0.452556 | 3_4:-43665610 | None:intergenic |
| TCCTATGTAATGTCTACAAC+TGG | 0.452660 | 3_4:-43666916 | None:intergenic |
| TGTAGATTCCGTTACAAAGA+TGG | 0.463502 | 3_4:+43661467 | Msa0501910:CDS |
| TTCGTCCCATGACTCAAGCT+CGG | 0.469021 | 3_4:-43665689 | None:intergenic |
| CAGAAAAGCAAAGGAAGAAA+CGG | 0.469810 | 3_4:+43666118 | Msa0501910:CDS |
| AGCCCAAACCCGCAAGGCAT+TGG | 0.471279 | 3_4:+43666461 | Msa0501910:CDS |
| TCCAAAATGATGGCAAATAT+GGG | 0.471721 | 3_4:+43665970 | Msa0501910:CDS |
| ATTACATAGGACATTTCATT+CGG | 0.472745 | 3_4:+43666928 | Msa0501910:three_prime_UTR |
| AGCAGCCGAGCTTGAGTCAT+GGG | 0.474748 | 3_4:+43665684 | Msa0501910:CDS |
| CAATGGTCAAGTGATGCAAT+TGG | 0.476631 | 3_4:+43661499 | Msa0501910:CDS |
| GTTCGGAATTGGTTGGATCA+AGG | 0.480602 | 3_4:-43659771 | None:intergenic |
| TGCACTTAAGTCTCATAAAG+TGG | 0.483692 | 3_4:+43666086 | Msa0501910:CDS |
| GGCTCTGGTTCAACATCTGC+AGG | 0.485074 | 3_4:-43661410 | None:intergenic |
| GAGAGTCCTTGAAAACCAAC+TGG | 0.486111 | 3_4:+43659693 | Msa0501910:CDS |
| AACCCGCAAGGCATTGGCTG+AGG | 0.488844 | 3_4:+43666467 | Msa0501910:CDS |
| TATGGGTTACCAAGAAGGAA+TGG | 0.489933 | 3_4:+43665987 | Msa0501910:CDS |
| CAGCCTCAGCCAATGCCTTG+CGG | 0.490138 | 3_4:-43666470 | None:intergenic |
| GCATGATCTAAGGACTGCTT+AGG | 0.491473 | 3_4:-43666066 | None:intergenic |
| ATGGGTTACCAAGAAGGAAT+GGG | 0.492243 | 3_4:+43665988 | Msa0501910:CDS |
| GCAAATATGGGTTACCAAGA+AGG | 0.492333 | 3_4:+43665982 | Msa0501910:CDS |
| GCACAGCACTGTGTCTGCTT+CGG | 0.493677 | 3_4:-43661342 | None:intergenic |
| CTGACCACTCAGGTGAAAGA+AGG | 0.494272 | 3_4:-43666727 | None:intergenic |
| AAGCCGCAAAGTAAAGGTTC+AGG | 0.496345 | 3_4:+43666294 | Msa0501910:CDS |
| ATGAAGAAGCCGCAAAGTAA+AGG | 0.500836 | 3_4:+43666288 | Msa0501910:CDS |
| AAAATGCAAGATTTACAACT+TGG | 0.501295 | 3_4:-43666866 | None:intergenic |
| TTTGGAAGCCGTCCCTTGCT+GGG | 0.503809 | 3_4:+43665617 | Msa0501910:CDS |
| AACTGCTATATTTGCGAAGT+GGG | 0.506208 | 3_4:+43665924 | Msa0501910:CDS |
| CCTTGCTGGGTCAAGCATAT+GGG | 0.512367 | 3_4:+43665630 | Msa0501910:CDS |
| GTAATCGGATTGTTCTAAGC+TGG | 0.518452 | 3_4:-43665824 | None:intergenic |
| CAGAGGTGGTAAGAGAAAAC+GGG | 0.519218 | 3_4:+43666143 | Msa0501910:CDS |
| TTGTGAGGTGGAACGAGAAT+GGG | 0.520193 | 3_4:+43659658 | Msa0501910:exon |
| CTTAAGTCTCATAAAGTGGA+AGG | 0.523148 | 3_4:+43666090 | Msa0501910:CDS |
| TCCTACATCTGAAAATATGC+TGG | 0.524946 | 3_4:+43661553 | Msa0501910:CDS |
| ATTGTGAGGTGGAACGAGAA+TGG | 0.526391 | 3_4:+43659657 | Msa0501910:exon |
| CTCAGAGGAAGAGGAACCAC+AGG | 0.529152 | 3_4:+43665852 | Msa0501910:CDS |
| TTGAACGCCTTTCTGTAAGT+TGG | 0.529456 | 3_4:-43665896 | None:intergenic |
| CCCATATGCTTGACCCAGCA+AGG | 0.531582 | 3_4:-43665630 | None:intergenic |
| GGTAGAACCTTCACTGGTAT+GGG | 0.533043 | 3_4:-43666042 | None:intergenic |
| TTACAGCGGCTCAGAGGAAG+AGG | 0.535906 | 3_4:+43665843 | Msa0501910:CDS |
| AGGCATGGCTTCCAAAATGA+TGG | 0.538766 | 3_4:+43665960 | Msa0501910:CDS |
| CATGTAATTGAAGTTCCAGT+TGG | 0.543818 | 3_4:-43659708 | None:intergenic |
| GCAATTAAGGATGCCGAGGA+AGG | 0.547779 | 3_4:+43661287 | Msa0501910:CDS |
| TAATTTAATAAAGTGAAGAA+GGG | 0.549996 | 3_4:+43659605 | None:intergenic |
| TCCGTTACAAAGATGGGCGT+TGG | 0.550166 | 3_4:+43661474 | Msa0501910:CDS |
| CACGGTGAAGCTTCCAACAA+TGG | 0.551415 | 3_4:+43666261 | Msa0501910:CDS |
| GTAGATTCCGTTACAAAGAT+GGG | 0.552313 | 3_4:+43661468 | Msa0501910:CDS |
| GTTGGAAGCTTCACCGTGCA+TGG | 0.554167 | 3_4:-43666256 | None:intergenic |
| AAAGATGGGCGTTGGTACAA+TGG | 0.554183 | 3_4:+43661482 | Msa0501910:CDS |
| GGTTTAGGCTTAACTGGTCA+GGG | 0.554398 | 3_4:+43666009 | Msa0501910:CDS |
| TGACCACTCAGGTGAAAGAA+GGG | 0.557501 | 3_4:-43666726 | None:intergenic |
| AACAACATCATCTGAGGCAG+AGG | 0.558032 | 3_4:-43666505 | None:intergenic |
| TCGAGGAGTTCGGAATTGGT+TGG | 0.566915 | 3_4:-43659778 | None:intergenic |
| CAAAGTAAAGGTTCAGGTGA+AGG | 0.567290 | 3_4:+43666300 | Msa0501910:CDS |
| TTAGCAGCTTACCATGGGAT+AGG | 0.568857 | 3_4:-43664506 | None:intergenic |
| ACCACTCAGGTGAAAGAAGG+GGG | 0.570777 | 3_4:-43666724 | None:intergenic |
| GAGCAGCCGAGCTTGAGTCA+TGG | 0.572843 | 3_4:+43665683 | Msa0501910:CDS |
| GCAGTCTCAAATGCAAATGC+AGG | 0.576110 | 3_4:+43665652 | Msa0501910:CDS |
| TTAGGTGGTAGAACCTTCAC+TGG | 0.576337 | 3_4:-43666048 | None:intergenic |
| TCGCAGAACTTCCATCATCT+CGG | 0.576538 | 3_4:-43665738 | None:intergenic |
| GATAGTACCAACTTACAGAA+AGG | 0.577624 | 3_4:+43665889 | Msa0501910:CDS |
| CATTCAATATATCCTCATGC+AGG | 0.585664 | 3_4:+43666611 | Msa0501910:three_prime_UTR |
| TCAACATCTGCAGGATCAAG+TGG | 0.594691 | 3_4:-43661401 | None:intergenic |
| GATGGAAGTTCTGCGAAGCT+TGG | 0.595918 | 3_4:+43665745 | Msa0501910:CDS |
| TAGGTGAAGAAGTCCTTCCT+CGG | 0.599243 | 3_4:-43661300 | None:intergenic |
| TCAAAGCATCTGCCTGCATG+AGG | 0.601051 | 3_4:-43666623 | None:intergenic |
| ACCAACGCCCATCTTTGTAA+CGG | 0.601052 | 3_4:-43661475 | None:intergenic |
| AATTGGATTGTATTGTGAGG+TGG | 0.602196 | 3_4:+43659646 | Msa0501910:five_prime_UTR |
| GGACGGCTTCCAAATTGTTG+GGG | 0.603564 | 3_4:-43665608 | None:intergenic |
| AGGAAGAAACGGACCAGAGG+TGG | 0.605286 | 3_4:+43666129 | Msa0501910:CDS |
| TGCTTATGAGAATGATGTGA+AGG | 0.609787 | 3_4:+43666350 | Msa0501910:CDS |
| CACTCAGGTGAAAGAAGGGG+GGG | 0.611567 | 3_4:-43666722 | None:intergenic |
| TGATCTAAGGACTGCTTAGG+TGG | 0.612721 | 3_4:-43666063 | None:intergenic |
| AGTAACTGTCGCCTATCCCA+TGG | 0.613342 | 3_4:+43664495 | Msa0501910:CDS |
| CAAAGGAAGAAACGGACCAG+AGG | 0.617674 | 3_4:+43666126 | Msa0501910:CDS |
| GATGCAATTGGATAATTCAG+TGG | 0.621983 | 3_4:+43661511 | Msa0501910:CDS |
| AACACTCAACTAGCCATGCA+CGG | 0.622219 | 3_4:+43666243 | Msa0501910:CDS |
| GGTTGATCCCATACCAGTGA+AGG | 0.622390 | 3_4:+43666035 | Msa0501910:CDS |
| GTCGATATCCCAGGTTCACG+AGG | 0.623116 | 3_4:+43661253 | Msa0501910:intron |
| GACCACTCAGGTGAAAGAAG+GGG | 0.623259 | 3_4:-43666725 | None:intergenic |
| TTTGCTAACAACATCATCTG+AGG | 0.624235 | 3_4:-43666511 | None:intergenic |
| ATGCTTGACCCAGCAAGGGA+CGG | 0.625116 | 3_4:-43665625 | None:intergenic |
| AAACTGCTATATTTGCGAAG+TGG | 0.626176 | 3_4:+43665923 | Msa0501910:CDS |
| CAGTGTAATGCTGACCACTC+AGG | 0.627828 | 3_4:-43666737 | None:intergenic |
| CAAGATTTACAACTTGGACG+CGG | 0.629736 | 3_4:-43666860 | None:intergenic |
| GGAGAACCATACCAGAGGCA+TGG | 0.631835 | 3_4:+43665945 | Msa0501910:CDS |
| TTAAGTCTCATAAAGTGGAA+GGG | 0.632685 | 3_4:+43666091 | Msa0501910:CDS |
| AAAATTAGCCCAAACCCGCA+AGG | 0.634660 | 3_4:+43666455 | Msa0501910:CDS |
| CCATATGCTTGACCCAGCAA+GGG | 0.636597 | 3_4:-43665629 | None:intergenic |
| ATCCGATTACAGCGGCTCAG+AGG | 0.638535 | 3_4:+43665837 | Msa0501910:CDS |
| AAGGGAACACAGAAAAGCAA+AGG | 0.640836 | 3_4:+43666109 | Msa0501910:CDS |
| ACCAGTTGTAGACATTACAT+AGG | 0.645349 | 3_4:+43666915 | Msa0501910:three_prime_UTR |
| TCAGGCAATTAAGGATGCCG+AGG | 0.649742 | 3_4:+43661283 | Msa0501910:CDS |
| AACCAATTCCGAACTCCTCG+AGG | 0.659085 | 3_4:+43659780 | Msa0501910:CDS |
| CCACTCAGGTGAAAGAAGGG+GGG | 0.679833 | 3_4:-43666723 | None:intergenic |
| TCCATAAATCCTAAACCCTG+TGG | 0.699072 | 3_4:-43665868 | None:intergenic |
| AAGTGGGAGAACCATACCAG+AGG | 0.724288 | 3_4:+43665940 | Msa0501910:CDS |
| GAAAATTGGATTGTATTGTG+AGG | 0.724613 | 3_4:+43659643 | Msa0501910:five_prime_UTR |
| TTAGAACAATCCGATTACAG+CGG | 0.729255 | 3_4:+43665829 | Msa0501910:CDS |
| TCAGAGGAAGAGGAACCACA+GGG | 0.729850 | 3_4:+43665853 | Msa0501910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCAACTTTTATAATTTT+TGG | - | chr3_4:43662931-43662950 | None:intergenic | 10.0% |
| !! | AAAACTTAAATCATTTATAA+AGG | - | chr3_4:43663968-43663987 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTTTGTTTTAA+AGG | + | chr3_4:43664044-43664063 | Msa0501910:intron | 10.0% |
| !!! | TTTGAACTTTATTTTTAAAA+TGG | + | chr3_4:43664918-43664937 | Msa0501910:intron | 10.0% |
| !! | TTTCTTATGATAAAAGATAT+AGG | + | chr3_4:43660220-43660239 | Msa0501910:intron | 15.0% |
| !!! | AAACATTTTGACTTTATTTT+GGG | - | chr3_4:43660523-43660542 | None:intergenic | 15.0% |
| !!! | AAAACATTTTGACTTTATTT+TGG | - | chr3_4:43660524-43660543 | None:intergenic | 15.0% |
| !!! | ACAAGATTAAATTTTTAAGA+GGG | - | chr3_4:43662312-43662331 | None:intergenic | 15.0% |
| !!! | AACAAGATTAAATTTTTAAG+AGG | - | chr3_4:43662313-43662332 | None:intergenic | 15.0% |
| !! | TCTTAAAAATTTAATCTTGT+TGG | + | chr3_4:43662312-43662331 | Msa0501910:intron | 15.0% |
| !! | TGGAAAAATTTATTAGAAAA+TGG | + | chr3_4:43662463-43662482 | Msa0501910:intron | 15.0% |
| !!! | TGGTTTTAAATAAAAAACAA+GGG | - | chr3_4:43663670-43663689 | None:intergenic | 15.0% |
| !!! | TTGGTTTTAAATAAAAAACA+AGG | - | chr3_4:43663671-43663690 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTATTTAAAACCA+AGG | + | chr3_4:43663670-43663689 | Msa0501910:intron | 15.0% |
| !! | TGGTATTATAAAGTAATTAA+TGG | - | chr3_4:43664246-43664265 | None:intergenic | 15.0% |
| !! | TTAATTACTTTATAATACCA+TGG | + | chr3_4:43664246-43664265 | Msa0501910:intron | 15.0% |
| !! | AATGAAATTAAAATGTAGAT+AGG | - | chr3_4:43664876-43664895 | None:intergenic | 15.0% |
| !!! | TCTACATTTTAATTTCATTT+AGG | + | chr3_4:43664877-43664896 | Msa0501910:intron | 15.0% |
| !! | TTTATAATATCTATGTTTAC+AGG | + | chr3_4:43665550-43665569 | Msa0501910:intron | 15.0% |
| !!! | GTTGTTGAATTATTTTAGAA+TGG | + | chr3_4:43661018-43661037 | Msa0501910:intron | 20.0% |
| !!! | TTGAATTATTTTAGAATGGA+TGG | + | chr3_4:43661022-43661041 | Msa0501910:intron | 20.0% |
| !!! | TTTTTTATTTGTTATAGCAG+TGG | - | chr3_4:43661698-43661717 | None:intergenic | 20.0% |
| !! | AATGTAACATATATAGAGAA+GGG | + | chr3_4:43661765-43661784 | Msa0501910:intron | 20.0% |
| !! | TCTACTTCTAAATAAATCTA+GGG | - | chr3_4:43661829-43661848 | None:intergenic | 20.0% |
| !!! | TAAATGTTTTCTTGGTTTAA+GGG | + | chr3_4:43661940-43661959 | Msa0501910:intron | 20.0% |
| !!! | TGTTTTTATATAGTCTCATA+AGG | - | chr3_4:43661975-43661994 | None:intergenic | 20.0% |
| !!! | CAACTTTTAAAAGAATAACA+TGG | - | chr3_4:43662088-43662107 | None:intergenic | 20.0% |
| !! | TATCATATAAAATCACTTAC+AGG | + | chr3_4:43662178-43662197 | Msa0501910:intron | 20.0% |
| !! | TAAAGTTCTTATTGCTAAAT+AGG | + | chr3_4:43662368-43662387 | Msa0501910:intron | 20.0% |
| !! | AAAGTTCTTATTGCTAAATA+GGG | + | chr3_4:43662369-43662388 | Msa0501910:intron | 20.0% |
| !!! | TTATGTCAAGTTAATCTTTT+AGG | + | chr3_4:43662405-43662424 | Msa0501910:intron | 20.0% |
| !!! | TCGAATTTCAACTTTTTTTT+TGG | + | chr3_4:43662737-43662756 | Msa0501910:intron | 20.0% |
| !!! | TCAACTTTTTTTTTGGTTTT+TGG | + | chr3_4:43662744-43662763 | Msa0501910:intron | 20.0% |
| !!! | ACTTTTATAATTTTTGGTGA+TGG | - | chr3_4:43662925-43662944 | None:intergenic | 20.0% |
| !! | CAAAAAGTTATATGAAATAG+CGG | - | chr3_4:43663120-43663139 | None:intergenic | 20.0% |
| !! | AGAAACTGAAGTTATTAATT+AGG | + | chr3_4:43663621-43663640 | Msa0501910:intron | 20.0% |
| !! | GAAACTGAAGTTATTAATTA+GGG | + | chr3_4:43663622-43663641 | Msa0501910:intron | 20.0% |
| !!! | ATTTTTATTCCTCAAAATCT+AGG | + | chr3_4:43664365-43664384 | Msa0501910:intron | 20.0% |
| !! | ACAAGTAATCAAAGAAATAA+CGG | - | chr3_4:43664635-43664654 | None:intergenic | 20.0% |
| !! | CCAAAATTTATATCTCATAA+TGG | - | chr3_4:43664787-43664806 | None:intergenic | 20.0% |
| !!! | CCATTATGAGATATAAATTT+TGG | + | chr3_4:43664784-43664803 | Msa0501910:intron | 20.0% |
| !!! | ATAAATTTTGGTTAACATCT+TGG | + | chr3_4:43664796-43664815 | Msa0501910:intron | 20.0% |
| !! | TAACATCTTGGAAAAAATTT+AGG | + | chr3_4:43664808-43664827 | Msa0501910:intron | 20.0% |
| !! | AGAGAAAAAAATAATAGACA+TGG | + | chr3_4:43665257-43665276 | Msa0501910:intron | 20.0% |
| !!! | TTAAGTTTTAGTTAGTACTT+AGG | + | chr3_4:43666553-43666572 | Msa0501910:exon | 20.0% |
| ! | GAAAGAAAAAGAAGGAAAAT+TGG | + | chr3_4:43659629-43659648 | Msa0501910:five_prime_UTR | 25.0% |
| ! | AATCTGAATCTCCATTTATT+AGG | + | chr3_4:43659823-43659842 | Msa0501910:intron | 25.0% |
| ! | ATCTGAATCTCCATTTATTA+GGG | + | chr3_4:43659824-43659843 | Msa0501910:intron | 25.0% |
| !! | ATTGATTCTACATGAATCTA+TGG | - | chr3_4:43659949-43659968 | None:intergenic | 25.0% |
| !! | AAAATTGATTCTGACATGTT+TGG | - | chr3_4:43659987-43660006 | None:intergenic | 25.0% |
| !! | CATTTTCATTCCATTGTTTT+AGG | - | chr3_4:43660086-43660105 | None:intergenic | 25.0% |
| !! | ACTGTTTTCATGAATTATAC+TGG | + | chr3_4:43660558-43660577 | Msa0501910:intron | 25.0% |
| ! | TGGACAACTTATGAAAATAA+AGG | + | chr3_4:43660578-43660597 | Msa0501910:intron | 25.0% |
| !!! | GATTTTGTTTATATGCAGAA+TGG | - | chr3_4:43660822-43660841 | None:intergenic | 25.0% |
| !! | TTAAATATACCGGATTTTAC+TGG | + | chr3_4:43660955-43660974 | Msa0501910:intron | 25.0% |
| !! | TAAATATACCGGATTTTACT+GGG | + | chr3_4:43660956-43660975 | Msa0501910:intron | 25.0% |
| ! | ATGTGAGAATACAATATTCT+AGG | - | chr3_4:43661100-43661119 | None:intergenic | 25.0% |
| ! | TAGAATATTGTATTCTCACA+TGG | + | chr3_4:43661099-43661118 | Msa0501910:intron | 25.0% |
| ! | AGAATATTGTATTCTCACAT+GGG | + | chr3_4:43661100-43661119 | Msa0501910:intron | 25.0% |
| !! | GAAGAAAAAAGCTTTTCTAT+TGG | + | chr3_4:43661437-43661456 | Msa0501910:CDS | 25.0% |
| !!! | ATCTCTTTTTTCGTCTATTT+TGG | + | chr3_4:43661603-43661622 | Msa0501910:CDS | 25.0% |
| ! | GAATGTAACATATATAGAGA+AGG | + | chr3_4:43661764-43661783 | Msa0501910:intron | 25.0% |
| ! | ATATATAGAGAAGGGAAAAT+AGG | + | chr3_4:43661773-43661792 | Msa0501910:intron | 25.0% |
| ! | CTCTACTTCTAAATAAATCT+AGG | - | chr3_4:43661830-43661849 | None:intergenic | 25.0% |
| ! | AGAGAAAAAAGCAAATGATT+AGG | + | chr3_4:43661846-43661865 | Msa0501910:intron | 25.0% |
| !! | CTAAATGTTTTCTTGGTTTA+AGG | + | chr3_4:43661939-43661958 | Msa0501910:intron | 25.0% |
| ! | ACATTTACCTAACTAGATTT+AGG | - | chr3_4:43662204-43662223 | None:intergenic | 25.0% |
| !!! | ATATTGGTCTTTTTTAAGGT+TGG | - | chr3_4:43662431-43662450 | None:intergenic | 25.0% |
| !!! | CAAGATATTGGTCTTTTTTA+AGG | - | chr3_4:43662435-43662454 | None:intergenic | 25.0% |
| ! | ATTTGATGTTTCAACAGTTT+AGG | + | chr3_4:43662562-43662581 | Msa0501910:intron | 25.0% |
| ! | ATATGTCAAATGAGTTACTT+AGG | - | chr3_4:43662615-43662634 | None:intergenic | 25.0% |
| ! | AATAGCAGCAAAAAAAAAAG+AGG | - | chr3_4:43662716-43662735 | None:intergenic | 25.0% |
| ! | AAACAACACTTAAAAAGGAA+TGG | - | chr3_4:43662845-43662864 | None:intergenic | 25.0% |
| ! | GTCAAAAACAACACTTAAAA+AGG | - | chr3_4:43662850-43662869 | None:intergenic | 25.0% |
| !!! | CGCTATTTCATATAACTTTT+TGG | + | chr3_4:43663118-43663137 | Msa0501910:intron | 25.0% |
| !!! | GGTTTGCTATAAAAGTATTT+AGG | + | chr3_4:43663338-43663357 | Msa0501910:intron | 25.0% |
| ! | TTTCACGTAAAATGAAATAG+CGG | + | chr3_4:43663705-43663724 | Msa0501910:intron | 25.0% |
| ! | TATTCTTAGCTAGTAAAATC+TGG | + | chr3_4:43664098-43664117 | Msa0501910:intron | 25.0% |
| ! | AACAAAGACAAAAACCAATA+TGG | - | chr3_4:43664147-43664166 | None:intergenic | 25.0% |
| !!! | ATGATTTTTCTTGTTTTCCA+TGG | - | chr3_4:43664266-43664285 | None:intergenic | 25.0% |
| ! | AGTTTATGTGAATAAACCTT+TGG | + | chr3_4:43664686-43664705 | Msa0501910:intron | 25.0% |
| ! | TGTTACAATAAAGGAAAACT+TGG | - | chr3_4:43664715-43664734 | None:intergenic | 25.0% |
| ! | CCATAGTTATGTTACAATAA+AGG | - | chr3_4:43664724-43664743 | None:intergenic | 25.0% |
| ! | CCTTTATTGTAACATAACTA+TGG | + | chr3_4:43664721-43664740 | Msa0501910:intron | 25.0% |
| !! | AATTTCATTTAGGTTCATTG+CGG | + | chr3_4:43664887-43664906 | Msa0501910:intron | 25.0% |
| ! | AAATAAACAAGGTGATTTCA+TGG | - | chr3_4:43665094-43665113 | None:intergenic | 25.0% |
| !!! | GAAATCACCTTGTTTATTTT+TGG | + | chr3_4:43665095-43665114 | Msa0501910:intron | 25.0% |
| !! | CTAAACTGGATTTTTAATCT+TGG | + | chr3_4:43665129-43665148 | Msa0501910:intron | 25.0% |
| ! | TTATAGGATTTCAGATAAAG+AGG | + | chr3_4:43665232-43665251 | Msa0501910:intron | 25.0% |
| ! | TATAGGATTTCAGATAAAGA+GGG | + | chr3_4:43665233-43665252 | Msa0501910:intron | 25.0% |
| !!! | GGTTCTAAAATTTGAACAAA+TGG | + | chr3_4:43666386-43666405 | Msa0501910:CDS | 25.0% |
| ! | ATTTCATCCAAAATCACATT+TGG | - | chr3_4:43666819-43666838 | None:intergenic | 25.0% |
| ! | AAAATGCAAGATTTACAACT+TGG | - | chr3_4:43666869-43666888 | None:intergenic | 25.0% |
| ! | ATTACATAGGACATTTCATT+CGG | + | chr3_4:43666928-43666947 | Msa0501910:three_prime_UTR | 25.0% |
| GAAAATTGGATTGTATTGTG+AGG | + | chr3_4:43659643-43659662 | Msa0501910:five_prime_UTR | 30.0% | |
| AATCTCCATTTATTAGGGTT+TGG | + | chr3_4:43659829-43659848 | Msa0501910:intron | 30.0% | |
| TCAAACCAAACCCTAATAAA+TGG | - | chr3_4:43659837-43659856 | None:intergenic | 30.0% | |
| ! | GGTTTGATGTGTTTTATGTT+TGG | + | chr3_4:43659850-43659869 | Msa0501910:intron | 30.0% |
| ATTCAGTAGCATACATTACA+CGG | - | chr3_4:43660062-43660081 | None:intergenic | 30.0% | |
| CTATTTATGTTAGCTCAGTT+TGG | + | chr3_4:43660139-43660158 | Msa0501910:intron | 30.0% | |
| TATGATAAAAGATATAGGCC+CGG | + | chr3_4:43660225-43660244 | Msa0501910:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr3_4:43660371-43660390 | Msa0501910:intron | 30.0% |
| TTTGGGAGAACTTATGAAAA+CGG | - | chr3_4:43660445-43660464 | None:intergenic | 30.0% | |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr3_4:43660462-43660481 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr3_4:43660463-43660482 | None:intergenic | 30.0% |
| CTCTTTATATTCCGTATTCA+TGG | + | chr3_4:43660904-43660923 | Msa0501910:intron | 30.0% | |
| ATAATTCAACAACAGCATGT+TGG | - | chr3_4:43661011-43661030 | None:intergenic | 30.0% | |
| AAACATAGGTTCGATTGATA+TGG | + | chr3_4:43661147-43661166 | Msa0501910:intron | 30.0% | |
| !! | GATTTTAACCACCATGATTA+TGG | + | chr3_4:43661180-43661199 | Msa0501910:intron | 30.0% |
| TTGAATGATAGCCATAATCA+TGG | - | chr3_4:43661194-43661213 | None:intergenic | 30.0% | |
| TTAAAATTTGTCGATATCCC+AGG | + | chr3_4:43661244-43661263 | Msa0501910:intron | 30.0% | |
| ! | TTTTGCTGAAGAAAAGAAAG+TGG | + | chr3_4:43661376-43661395 | Msa0501910:intron | 30.0% |
| !!! | GAAAAGCTTTTTTCTTCTAG+CGG | - | chr3_4:43661434-43661453 | None:intergenic | 30.0% |
| ! | CTGGTATGCAAAATCATTTT+GGG | + | chr3_4:43661572-43661591 | Msa0501910:CDS | 30.0% |
| TTATAGCAGTGGAAATTAAG+GGG | - | chr3_4:43661687-43661706 | None:intergenic | 30.0% | |
| GTTATAGCAGTGGAAATTAA+GGG | - | chr3_4:43661688-43661707 | None:intergenic | 30.0% | |
| TGTTATAGCAGTGGAAATTA+AGG | - | chr3_4:43661689-43661708 | None:intergenic | 30.0% | |
| GTAAAGATAAAGGGTAATGA+GGG | - | chr3_4:43661892-43661911 | None:intergenic | 30.0% | |
| ! | TCATTTTCCTTTTATGGTGT+GGG | - | chr3_4:43661915-43661934 | None:intergenic | 30.0% |
| ! | ATCATTTTCCTTTTATGGTG+TGG | - | chr3_4:43661916-43661935 | None:intergenic | 30.0% |
| ! | AGCTGATCATTTTCCTTTTA+TGG | - | chr3_4:43661921-43661940 | None:intergenic | 30.0% |
| ! | TGATCAGCTAAATGTTTTCT+TGG | + | chr3_4:43661932-43661951 | Msa0501910:intron | 30.0% |
| !! | GGATAAAACTCTAAAACACT+TGG | - | chr3_4:43662058-43662077 | None:intergenic | 30.0% |
| !!! | GTTTTAGAGTTTTATCCTTG+TGG | + | chr3_4:43662061-43662080 | Msa0501910:intron | 30.0% |
| GTTGAATTTACGCACAATAT+AGG | + | chr3_4:43662104-43662123 | Msa0501910:intron | 30.0% | |
| !! | CGGTCTTATTGAAATTCAAA+GGG | + | chr3_4:43662127-43662146 | Msa0501910:intron | 30.0% |
| TAGCATGCTTCAAAAAGATA+TGG | - | chr3_4:43662510-43662529 | None:intergenic | 30.0% | |
| !! | AGTGTTTTGTTAGTGTAGTT+TGG | + | chr3_4:43662645-43662664 | Msa0501910:intron | 30.0% |
| AACACTTAAAAAGGAATGGA+GGG | - | chr3_4:43662841-43662860 | None:intergenic | 30.0% | |
| CAAAGCATAGTAGTTAATAG+CGG | + | chr3_4:43663033-43663052 | Msa0501910:intron | 30.0% | |
| ACTTTGTGAATGTAATGAAG+TGG | - | chr3_4:43663264-43663283 | None:intergenic | 30.0% | |
| TTGTTTGGCAATTTAATCAC+TGG | - | chr3_4:43663394-43663413 | None:intergenic | 30.0% | |
| GTGATAATCTCGATATTGTT+TGG | - | chr3_4:43663409-43663428 | None:intergenic | 30.0% | |
| AACAATATCGAGATTATCAC+CGG | + | chr3_4:43663409-43663428 | Msa0501910:intron | 30.0% | |
| AGAGAAGATTTAATGAAGAG+AGG | + | chr3_4:43663532-43663551 | Msa0501910:intron | 30.0% | |
| CTTCCTTCTTTCATTCTTTA+CGG | - | chr3_4:43663599-43663618 | None:intergenic | 30.0% | |
| TGAAAATACAAGATTCTCCT+TGG | - | chr3_4:43663690-43663709 | None:intergenic | 30.0% | |
| GTCAAAGTAGATTATGTGAA+TGG | + | chr3_4:43663880-43663899 | Msa0501910:intron | 30.0% | |
| AAAGTAGATTATGTGAATGG+TGG | + | chr3_4:43663883-43663902 | Msa0501910:intron | 30.0% | |
| CTAAGAATAGTTCATTGATG+GGG | - | chr3_4:43664087-43664106 | None:intergenic | 30.0% | |
| GCTAAGAATAGTTCATTGAT+GGG | - | chr3_4:43664088-43664107 | None:intergenic | 30.0% | |
| AGCTAAGAATAGTTCATTGA+TGG | - | chr3_4:43664089-43664108 | None:intergenic | 30.0% | |
| ATTTCGTCGTCTTAACATTT+CGG | + | chr3_4:43664181-43664200 | Msa0501910:intron | 30.0% | |
| AAAGTAATTAATGGCAGATG+AGG | - | chr3_4:43664237-43664256 | None:intergenic | 30.0% | |
| ATATGTGTGTGAAGTAGATA+TGG | + | chr3_4:43664309-43664328 | Msa0501910:intron | 30.0% | |
| !! | AATCTAGAACCTAGATTTTG+AGG | - | chr3_4:43664377-43664396 | None:intergenic | 30.0% |
| TAACTATGGTTATCATCACA+AGG | + | chr3_4:43664735-43664754 | Msa0501910:intron | 30.0% | |
| AACTATGGTTATCATCACAA+GGG | + | chr3_4:43664736-43664755 | Msa0501910:intron | 30.0% | |
| CATCTTGGAAAAAATTTAGG+TGG | + | chr3_4:43664811-43664830 | Msa0501910:intron | 30.0% | |
| GTTTGTGTACTTGAATCTAT+AGG | + | chr3_4:43664833-43664852 | Msa0501910:intron | 30.0% | |
| ! | ATTTCATTTAGGTTCATTGC+GGG | + | chr3_4:43664888-43664907 | Msa0501910:intron | 30.0% |
| CACAAACATTGAATTGGAAA+AGG | - | chr3_4:43664948-43664967 | None:intergenic | 30.0% | |
| ! | CTTTTCCAATTCAATGTTTG+TGG | + | chr3_4:43664946-43664965 | Msa0501910:intron | 30.0% |
| AATTCAATGTTTGTGGCATT+GGG | + | chr3_4:43664953-43664972 | Msa0501910:intron | 30.0% | |
| AAAATCCAGTTTAGAGAAGA+GGG | - | chr3_4:43665123-43665142 | None:intergenic | 30.0% | |
| AAAAATCCAGTTTAGAGAAG+AGG | - | chr3_4:43665124-43665143 | None:intergenic | 30.0% | |
| ! | CTGGATTTTTAATCTTGGTT+TGG | + | chr3_4:43665134-43665153 | Msa0501910:intron | 30.0% |
| TTCCAAAATGATGGCAAATA+TGG | + | chr3_4:43665969-43665988 | Msa0501910:CDS | 30.0% | |
| TCCAAAATGATGGCAAATAT+GGG | + | chr3_4:43665970-43665989 | Msa0501910:CDS | 30.0% | |
| TTAAGTCTCATAAAGTGGAA+GGG | + | chr3_4:43666091-43666110 | Msa0501910:CDS | 30.0% | |
| AAAGGTGGATAGAAAAATGT+TGG | + | chr3_4:43666326-43666345 | Msa0501910:CDS | 30.0% | |
| GCAAAGAAAAAGATAAGAGA+TGG | + | chr3_4:43666529-43666548 | Msa0501910:CDS | 30.0% | |
| GAAAAAGAAAGAAATCTCAC+AGG | + | chr3_4:43666652-43666671 | Msa0501910:three_prime_UTR | 30.0% | |
| TGCTTGGTTTACTATATGTT+TGG | + | chr3_4:43666782-43666801 | Msa0501910:three_prime_UTR | 30.0% | |
| GCTTGGTTTACTATATGTTT+GGG | + | chr3_4:43666783-43666802 | Msa0501910:three_prime_UTR | 30.0% | |
| ! | TTGTTTGCCAAATGTGATTT+TGG | + | chr3_4:43666809-43666828 | Msa0501910:three_prime_UTR | 30.0% |
| ! | AAATTGACTTTGCGCTTATT+TGG | + | chr3_4:43666835-43666854 | Msa0501910:three_prime_UTR | 30.0% |
| AGAAGGGAGAAAGAAAAAGA+AGG | + | chr3_4:43659621-43659640 | Msa0501910:five_prime_UTR | 35.0% | |
| AATTGGATTGTATTGTGAGG+TGG | + | chr3_4:43659646-43659665 | Msa0501910:five_prime_UTR | 35.0% | |
| CATGTAATTGAAGTTCCAGT+TGG | - | chr3_4:43659711-43659730 | None:intergenic | 35.0% | |
| TTGAAATTGAAGATACCTCG+AGG | - | chr3_4:43659798-43659817 | None:intergenic | 35.0% | |
| CTACTGAATGCCTAAAACAA+TGG | + | chr3_4:43660073-43660092 | Msa0501910:intron | 35.0% | |
| ACAACTTTGCCCAAAATTTG+GGG | - | chr3_4:43660118-43660137 | None:intergenic | 35.0% | |
| CACAACTTTGCCCAAAATTT+GGG | - | chr3_4:43660119-43660138 | None:intergenic | 35.0% | |
| AATAAGCTCTTTATCCCAAC+CGG | - | chr3_4:43660247-43660266 | None:intergenic | 35.0% | |
| !! | TATTTTGGGTCTCTTTGGAT+TGG | - | chr3_4:43660509-43660528 | None:intergenic | 35.0% |
| !!! | GACTTTATTTTGGGTCTCTT+TGG | - | chr3_4:43660514-43660533 | None:intergenic | 35.0% |
| GCTTATTTGAGCTCATATAC+AGG | - | chr3_4:43660647-43660666 | None:intergenic | 35.0% | |
| TAAGCCAATCCAAATAGACT+TGG | + | chr3_4:43660662-43660681 | Msa0501910:intron | 35.0% | |
| GTAACCAAGTCTATTTGGAT+TGG | - | chr3_4:43660669-43660688 | None:intergenic | 35.0% | |
| TGAGTGTAACCAAGTCTATT+TGG | - | chr3_4:43660674-43660693 | None:intergenic | 35.0% | |
| ! | TCAGTCAACTAAGCTAGTTT+AGG | + | chr3_4:43660772-43660791 | Msa0501910:intron | 35.0% |
| GCTGTTATGAATTCTGAACA+TGG | - | chr3_4:43660844-43660863 | None:intergenic | 35.0% | |
| AAACAAGGACACCATGAATA+CGG | - | chr3_4:43660918-43660937 | None:intergenic | 35.0% | |
| ! | TGTCCTTGTTTATATGAGTC+TGG | + | chr3_4:43660927-43660946 | Msa0501910:intron | 35.0% |
| ! | GTCCTTGTTTATATGAGTCT+GGG | + | chr3_4:43660928-43660947 | Msa0501910:intron | 35.0% |
| TTGTTTATATGAGTCTGGGT+GGG | + | chr3_4:43660932-43660951 | Msa0501910:intron | 35.0% | |
| ACAATTCACCCAGTAAAATC+CGG | - | chr3_4:43660967-43660986 | None:intergenic | 35.0% | |
| GCTTACTTGTAAGAACACAA+TGG | - | chr3_4:43661059-43661078 | None:intergenic | 35.0% | |
| TAGAAACTGGTGCAAAACAT+AGG | + | chr3_4:43661133-43661152 | Msa0501910:intron | 35.0% | |
| AATGATAGCCATAATCATGG+TGG | - | chr3_4:43661191-43661210 | None:intergenic | 35.0% | |
| CTATCATTCAAAGAATTCCG+AGG | + | chr3_4:43661203-43661222 | Msa0501910:intron | 35.0% | |
| ATTCAGTCTAAAAACAGCCT+CGG | - | chr3_4:43661223-43661242 | None:intergenic | 35.0% | |
| ATAATAATCTCGCACGCTTT+AGG | - | chr3_4:43661322-43661341 | None:intergenic | 35.0% | |
| TGTAGATTCCGTTACAAAGA+TGG | + | chr3_4:43661467-43661486 | Msa0501910:CDS | 35.0% | |
| GTAGATTCCGTTACAAAGAT+GGG | + | chr3_4:43661468-43661487 | Msa0501910:CDS | 35.0% | |
| GATGCAATTGGATAATTCAG+TGG | + | chr3_4:43661511-43661530 | Msa0501910:CDS | 35.0% | |
| TCCTACATCTGAAAATATGC+TGG | + | chr3_4:43661553-43661572 | Msa0501910:CDS | 35.0% | |
| ! | ACCAGCATATTTTCAGATGT+AGG | - | chr3_4:43661557-43661576 | None:intergenic | 35.0% |
| ! | GCTGGTATGCAAAATCATTT+TGG | + | chr3_4:43661571-43661590 | Msa0501910:CDS | 35.0% |
| !!! | TGACGAACTGTTGATTTTTC+AGG | - | chr3_4:43661732-43661751 | None:intergenic | 35.0% |
| ! | ATAAAGGGTAATGAGGGTAT+TGG | - | chr3_4:43661886-43661905 | None:intergenic | 35.0% |
| GGTAAAGATAAAGGGTAATG+AGG | - | chr3_4:43661893-43661912 | None:intergenic | 35.0% | |
| ! | CATTTTCCTTTTATGGTGTG+GGG | - | chr3_4:43661914-43661933 | None:intergenic | 35.0% |
| TTAATGTGTTAAGTCCTCAC+AGG | + | chr3_4:43661997-43662016 | Msa0501910:intron | 35.0% | |
| !!! | GCTTTTGGGATAGTTATTCA+CGG | + | chr3_4:43662024-43662043 | Msa0501910:intron | 35.0% |
| AAAGAATAACATGGACCACA+AGG | - | chr3_4:43662079-43662098 | None:intergenic | 35.0% | |
| GAATTTACGCACAATATAGG+CGG | + | chr3_4:43662107-43662126 | Msa0501910:intron | 35.0% | |
| !! | GCGGTCTTATTGAAATTCAA+AGG | + | chr3_4:43662126-43662145 | Msa0501910:intron | 35.0% |
| TTACAGGCCTAAATCTAGTT+AGG | + | chr3_4:43662194-43662213 | Msa0501910:intron | 35.0% | |
| ACCAATATCTTGCTGACAAT+TGG | + | chr3_4:43662443-43662462 | Msa0501910:intron | 35.0% | |
| TCCAATTGTCAGCAAGATAT+TGG | - | chr3_4:43662447-43662466 | None:intergenic | 35.0% | |
| CAACACTTAAAAAGGAATGG+AGG | - | chr3_4:43662842-43662861 | None:intergenic | 35.0% | |
| !! | TAGTAGTTAATAGCGGATAG+CGG | + | chr3_4:43663040-43663059 | Msa0501910:intron | 35.0% |
| ! | TATCCCGCTATAGCATTTTT+GGG | - | chr3_4:43663081-43663100 | None:intergenic | 35.0% |
| TTGGCAATTTAATCACTGGA+AGG | - | chr3_4:43663390-43663409 | None:intergenic | 35.0% | |
| CTTCTCTCAAAAGACATAAG+TGG | - | chr3_4:43663519-43663538 | None:intergenic | 35.0% | |
| TGACCCATAGTAGTTAATAG+CGG | - | chr3_4:43663864-43663883 | None:intergenic | 35.0% | |
| CACTCTTTATTGTGCCATAT+TGG | + | chr3_4:43664130-43664149 | Msa0501910:intron | 35.0% | |
| ! | TTACAACAACGATGTCGATT+TGG | + | chr3_4:43664471-43664490 | Msa0501910:CDS | 35.0% |
| ATCTATTAGCAGCTTACCAT+GGG | - | chr3_4:43664514-43664533 | None:intergenic | 35.0% | |
| AATCTATTAGCAGCTTACCA+TGG | - | chr3_4:43664515-43664534 | None:intergenic | 35.0% | |
| !! | ATACTTGCACTTTTAAGTGC+AGG | + | chr3_4:43664590-43664609 | Msa0501910:intron | 35.0% |
| ! | ACATAAACTAGCTCTCTGAT+TGG | - | chr3_4:43664675-43664694 | None:intergenic | 35.0% |
| TGTGTACTTGAATCTATAGG+AGG | + | chr3_4:43664836-43664855 | Msa0501910:intron | 35.0% | |
| GTGTACTTGAATCTATAGGA+GGG | + | chr3_4:43664837-43664856 | Msa0501910:intron | 35.0% | |
| CAATGCCACAAACATTGAAT+TGG | - | chr3_4:43664954-43664973 | None:intergenic | 35.0% | |
| CAATTCAATGTTTGTGGCAT+TGG | + | chr3_4:43664952-43664971 | Msa0501910:intron | 35.0% | |
| ATTCAATGTTTGTGGCATTG+GGG | + | chr3_4:43664954-43664973 | Msa0501910:intron | 35.0% | |
| AAATCCAGTTTAGAGAAGAG+GGG | - | chr3_4:43665122-43665141 | None:intergenic | 35.0% | |
| AAATAGACGCATGGTGTATT+AGG | - | chr3_4:43665177-43665196 | None:intergenic | 35.0% | |
| CACATTTGAAAATAGACGCA+TGG | - | chr3_4:43665186-43665205 | None:intergenic | 35.0% | |
| ! | TGCGTCTATTTTCAAATGTG+TGG | + | chr3_4:43665186-43665205 | Msa0501910:intron | 35.0% |
| !!! | TTGCTATTTTATGCCTGTTG+AGG | + | chr3_4:43665209-43665228 | Msa0501910:intron | 35.0% |
| TTTATGCCTGTTGAGGTTAT+AGG | + | chr3_4:43665216-43665235 | Msa0501910:intron | 35.0% | |
| TGAAATCCTATAACCTCAAC+AGG | - | chr3_4:43665225-43665244 | None:intergenic | 35.0% | |
| GAATTGTAGTTTGATGAGTG+AGG | + | chr3_4:43665279-43665298 | Msa0501910:intron | 35.0% | |
| ACTCCTAATACTGTTCAAAC+AGG | + | chr3_4:43665345-43665364 | Msa0501910:intron | 35.0% | |
| CTCCTAATACTGTTCAAACA+GGG | + | chr3_4:43665346-43665365 | Msa0501910:intron | 35.0% | |
| TACCCTGTTTGAACAGTATT+AGG | - | chr3_4:43665351-43665370 | None:intergenic | 35.0% | |
| CAAGCAGATGCTATAACTAT+AGG | - | chr3_4:43665477-43665496 | None:intergenic | 35.0% | |
| TAGTTATAGCATCTGCTTGT+TGG | + | chr3_4:43665478-43665497 | Msa0501910:intron | 35.0% | |
| TTAGAACAATCCGATTACAG+CGG | + | chr3_4:43665829-43665848 | Msa0501910:CDS | 35.0% | |
| GATAGTACCAACTTACAGAA+AGG | + | chr3_4:43665889-43665908 | Msa0501910:CDS | 35.0% | |
| CTTCGCAAATATAGCAGTTT+CGG | - | chr3_4:43665923-43665942 | None:intergenic | 35.0% | |
| AAACTGCTATATTTGCGAAG+TGG | + | chr3_4:43665923-43665942 | Msa0501910:CDS | 35.0% | |
| AACTGCTATATTTGCGAAGT+GGG | + | chr3_4:43665924-43665943 | Msa0501910:CDS | 35.0% | |
| ! | ACCCATATTTGCCATCATTT+TGG | - | chr3_4:43665974-43665993 | None:intergenic | 35.0% |
| AGACTTAAGTGCATGATCTA+AGG | - | chr3_4:43666079-43666098 | None:intergenic | 35.0% | |
| TGCACTTAAGTCTCATAAAG+TGG | + | chr3_4:43666086-43666105 | Msa0501910:CDS | 35.0% | |
| CTTAAGTCTCATAAAGTGGA+AGG | + | chr3_4:43666090-43666109 | Msa0501910:CDS | 35.0% | |
| CAGAAAAGCAAAGGAAGAAA+CGG | + | chr3_4:43666118-43666137 | Msa0501910:CDS | 35.0% | |
| TTTATTAGCGAGAAGACATC+TGG | - | chr3_4:43666225-43666244 | None:intergenic | 35.0% | |
| CTTCTTCATTGATCCATTGT+TGG | - | chr3_4:43666277-43666296 | None:intergenic | 35.0% | |
| TGCTTATGAGAATGATGTGA+AGG | + | chr3_4:43666350-43666369 | Msa0501910:CDS | 35.0% | |
| TGTGAAGGATTTGAAAGTTC+AGG | + | chr3_4:43666365-43666384 | Msa0501910:CDS | 35.0% | |
| TTCATAGCAGCATCATAAAC+AGG | - | chr3_4:43666435-43666454 | None:intergenic | 35.0% | |
| TTTGCTAACAACATCATCTG+AGG | - | chr3_4:43666514-43666533 | None:intergenic | 35.0% | |
| CATTCAATATATCCTCATGC+AGG | + | chr3_4:43666611-43666630 | Msa0501910:three_prime_UTR | 35.0% | |
| ACCAGTTGTAGACATTACAT+AGG | + | chr3_4:43666915-43666934 | Msa0501910:three_prime_UTR | 35.0% | |
| TCCTATGTAATGTCTACAAC+TGG | - | chr3_4:43666919-43666938 | None:intergenic | 35.0% | |
| !!! | GAAGTTCCAGTTGGTTTTCA+AGG | - | chr3_4:43659702-43659721 | None:intergenic | 40.0% |
| ! | CTTGTCGTAATTGATTCTGG+AGG | - | chr3_4:43660013-43660032 | None:intergenic | 40.0% |
| ! | CCACTTGTCGTAATTGATTC+TGG | - | chr3_4:43660016-43660035 | None:intergenic | 40.0% |
| CCAGAATCAATTACGACAAG+TGG | + | chr3_4:43660013-43660032 | Msa0501910:intron | 40.0% | |
| TTACGACAAGTGGAACCTTT+AGG | + | chr3_4:43660023-43660042 | Msa0501910:intron | 40.0% | |
| CAACTTTGCCCAAAATTTGG+GGG | - | chr3_4:43660117-43660136 | None:intergenic | 40.0% | |
| GCACAACTTTGCCCAAAATT+TGG | - | chr3_4:43660120-43660139 | None:intergenic | 40.0% | |
| ATAAAAGATATAGGCCCGGT+TGG | + | chr3_4:43660229-43660248 | Msa0501910:intron | 40.0% | |
| TAAAAGATATAGGCCCGGTT+GGG | + | chr3_4:43660230-43660249 | Msa0501910:intron | 40.0% | |
| ATAAGCTCTTTATCCCAACC+GGG | - | chr3_4:43660246-43660265 | None:intergenic | 40.0% | |
| CAGTCTCACAAAACTTATGC+TGG | + | chr3_4:43660465-43660484 | Msa0501910:intron | 40.0% | |
| TACACTCAATAGCAGAGTTG+TGG | + | chr3_4:43660686-43660705 | Msa0501910:intron | 40.0% | |
| ! | GTCAACTAAGCTAGTTTAGG+TGG | + | chr3_4:43660775-43660794 | Msa0501910:intron | 40.0% |
| CACCCAGACTCATATAAACA+AGG | - | chr3_4:43660933-43660952 | None:intergenic | 40.0% | |
| CTTGTTTATATGAGTCTGGG+TGG | + | chr3_4:43660931-43660950 | Msa0501910:intron | 40.0% | |
| !! | TCTGGGTGGGTTAAATATAC+CGG | + | chr3_4:43660945-43660964 | Msa0501910:intron | 40.0% |
| TTCAACAACAGCATGTTGGT+GGG | - | chr3_4:43661007-43661026 | None:intergenic | 40.0% | |
| ATTCAACAACAGCATGTTGG+TGG | - | chr3_4:43661008-43661027 | None:intergenic | 40.0% | |
| GGGATTGAGATTGTAGAAAC+TGG | + | chr3_4:43661120-43661139 | Msa0501910:intron | 40.0% | |
| TAGGTTCGATTGATATGGCT+TGG | + | chr3_4:43661152-43661171 | Msa0501910:intron | 40.0% | |
| ! | GGAACTTGTTCAGGCAATTA+AGG | + | chr3_4:43661274-43661293 | Msa0501910:CDS | 40.0% |
| CAATGGTCAAGTGATGCAAT+TGG | + | chr3_4:43661499-43661518 | Msa0501910:CDS | 40.0% | |
| AAATAGGCAACACAGGCATA+TGG | + | chr3_4:43661789-43661808 | Msa0501910:intron | 40.0% | |
| TGGTGTGGGGTAAAGATAAA+GGG | - | chr3_4:43661901-43661920 | None:intergenic | 40.0% | |
| ATGGTGTGGGGTAAAGATAA+AGG | - | chr3_4:43661902-43661921 | None:intergenic | 40.0% | |
| TCTTTACCCCACACCATAAA+AGG | + | chr3_4:43661905-43661924 | Msa0501910:intron | 40.0% | |
| !!! | TCCTCACAGGTTTAGCTTTT+GGG | + | chr3_4:43662010-43662029 | Msa0501910:intron | 40.0% |
| TGGGATAGTTATTCACGGTA+TGG | + | chr3_4:43662029-43662048 | Msa0501910:intron | 40.0% | |
| ATGCTACAATCGTGCAGTTT+AGG | + | chr3_4:43662524-43662543 | Msa0501910:intron | 40.0% | |
| TGCTACAATCGTGCAGTTTA+GGG | + | chr3_4:43662525-43662544 | Msa0501910:intron | 40.0% | |
| GTGTCACAGTTTCAAGAGTT+GGG | - | chr3_4:43662691-43662710 | None:intergenic | 40.0% | |
| TGTGTCACAGTTTCAAGAGT+TGG | - | chr3_4:43662692-43662711 | None:intergenic | 40.0% | |
| ! | ATCCCGCTATAGCATTTTTG+GGG | - | chr3_4:43663080-43663099 | None:intergenic | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+TGG | - | chr3_4:43663082-43663101 | None:intergenic | 40.0% |
| ! | GACTTGGTTACAACTCAGTT+GGG | - | chr3_4:43663239-43663258 | None:intergenic | 40.0% |
| ! | AGACTTGGTTACAACTCAGT+TGG | - | chr3_4:43663240-43663259 | None:intergenic | 40.0% |
| ATGTAATGAAGTGGCAGACT+TGG | - | chr3_4:43663255-43663274 | None:intergenic | 40.0% | |
| ATGCAAACCTCTCAGCAATT+TGG | + | chr3_4:43663298-43663317 | Msa0501910:intron | 40.0% | |
| TGCAAACCTCTCAGCAATTT+GGG | + | chr3_4:43663299-43663318 | Msa0501910:intron | 40.0% | |
| TTGGGATCTGTCTCAATTTC+TGG | + | chr3_4:43663317-43663336 | Msa0501910:intron | 40.0% | |
| ATTGATTGAACACCAGAAGC+TGG | + | chr3_4:43663361-43663380 | Msa0501910:intron | 40.0% | |
| TTGATTGAACACCAGAAGCT+GGG | + | chr3_4:43663362-43663381 | Msa0501910:intron | 40.0% | |
| CATGTGCTCAAAGACATAAG+TGG | - | chr3_4:43663436-43663455 | None:intergenic | 40.0% | |
| GTTTGATTGAACACCAGAAG+CGG | + | chr3_4:43663472-43663491 | Msa0501910:intron | 40.0% | |
| ATAAGTGGACAACACAGTCA+TGG | - | chr3_4:43663504-43663523 | None:intergenic | 40.0% | |
| !! | GATTATGTGAATGGTGGACA+TGG | + | chr3_4:43663889-43663908 | Msa0501910:intron | 40.0% |
| TCAAACGACCACCCTTAAAA+AGG | + | chr3_4:43663912-43663931 | Msa0501910:intron | 40.0% | |
| CACCCTTAAAAAGGAACAGA+GGG | + | chr3_4:43663921-43663940 | Msa0501910:intron | 40.0% | |
| ! | CTCCCTCTGTTCCTTTTTAA+GGG | - | chr3_4:43663926-43663945 | None:intergenic | 40.0% |
| ! | ACTCCCTCTGTTCCTTTTTA+AGG | - | chr3_4:43663927-43663946 | None:intergenic | 40.0% |
| TGAAAGAGCTGATTACAACG+AGG | - | chr3_4:43664557-43664576 | None:intergenic | 40.0% | |
| AAGGAAAACTTGGACACCAA+AGG | - | chr3_4:43664705-43664724 | None:intergenic | 40.0% | |
| TACTTGAATCTATAGGAGGG+TGG | + | chr3_4:43664840-43664859 | Msa0501910:intron | 40.0% | |
| ! | TTCAATGTTTGTGGCATTGG+GGG | + | chr3_4:43664955-43664974 | Msa0501910:intron | 40.0% |
| GTGAAATGCTTCACTCATTC+AGG | + | chr3_4:43664977-43664996 | Msa0501910:intron | 40.0% | |
| AATCCAGTTTAGAGAAGAGG+GGG | - | chr3_4:43665121-43665140 | None:intergenic | 40.0% | |
| ! | TGTTCAACTGACTTCCCTTA+AGG | + | chr3_4:43665579-43665598 | Msa0501910:CDS | 40.0% |
| TGTTGGGGCATATTCCTTAA+GGG | - | chr3_4:43665596-43665615 | None:intergenic | 40.0% | |
| TTGTTGGGGCATATTCCTTA+AGG | - | chr3_4:43665597-43665616 | None:intergenic | 40.0% | |
| AGGAATATGCCCCAACAATT+TGG | + | chr3_4:43665599-43665618 | Msa0501910:CDS | 40.0% | |
| CAAATGCAAATGCAGGCATT+TGG | + | chr3_4:43665659-43665678 | Msa0501910:CDS | 40.0% | |
| !! | CAAGTTGTTTTCCGAGATGA+TGG | + | chr3_4:43665727-43665746 | Msa0501910:CDS | 40.0% |
| ! | GTAATCGGATTGTTCTAAGC+TGG | - | chr3_4:43665827-43665846 | None:intergenic | 40.0% |
| ! | ACCACAGGGTTTAGGATTTA+TGG | + | chr3_4:43665867-43665886 | Msa0501910:CDS | 40.0% |
| TCCATAAATCCTAAACCCTG+TGG | - | chr3_4:43665871-43665890 | None:intergenic | 40.0% | |
| TTGAACGCCTTTCTGTAAGT+TGG | - | chr3_4:43665899-43665918 | None:intergenic | 40.0% | |
| ! | GCAAATATGGGTTACCAAGA+AGG | + | chr3_4:43665982-43666001 | Msa0501910:CDS | 40.0% |
| ! | TATGGGTTACCAAGAAGGAA+TGG | + | chr3_4:43665987-43666006 | Msa0501910:CDS | 40.0% |
| ! | ATGGGTTACCAAGAAGGAAT+GGG | + | chr3_4:43665988-43666007 | Msa0501910:CDS | 40.0% |
| ! | TACCAAGAAGGAATGGGTTT+AGG | + | chr3_4:43665994-43666013 | Msa0501910:CDS | 40.0% |
| AAGGGAACACAGAAAAGCAA+AGG | + | chr3_4:43666109-43666128 | Msa0501910:CDS | 40.0% | |
| ATGAAGAAGCCGCAAAGTAA+AGG | + | chr3_4:43666288-43666307 | Msa0501910:CDS | 40.0% | |
| TCACCTGAACCTTTACTTTG+CGG | - | chr3_4:43666300-43666319 | None:intergenic | 40.0% | |
| CAAAGTAAAGGTTCAGGTGA+AGG | + | chr3_4:43666300-43666319 | Msa0501910:CDS | 40.0% | |
| AGGTTCAGGTGAAGGTAAAA+AGG | + | chr3_4:43666308-43666327 | Msa0501910:CDS | 40.0% | |
| TTCAGGTGAAGGTAAAAAGG+TGG | + | chr3_4:43666311-43666330 | Msa0501910:CDS | 40.0% | |
| ! | AAGCTGTAAGTTTGCTTGCT+TGG | + | chr3_4:43666766-43666785 | Msa0501910:three_prime_UTR | 40.0% |
| CAAGATTTACAACTTGGACG+CGG | - | chr3_4:43666863-43666882 | None:intergenic | 40.0% | |
| ATTGTGAGGTGGAACGAGAA+TGG | + | chr3_4:43659657-43659676 | Msa0501910:exon | 45.0% | |
| TTGTGAGGTGGAACGAGAAT+GGG | + | chr3_4:43659658-43659677 | Msa0501910:exon | 45.0% | |
| GAGAGTCCTTGAAAACCAAC+TGG | + | chr3_4:43659693-43659712 | Msa0501910:CDS | 45.0% | |
| GTTCGGAATTGGTTGGATCA+AGG | - | chr3_4:43659774-43659793 | None:intergenic | 45.0% | |
| TGAAGATACCTCGAGGAGTT+CGG | - | chr3_4:43659791-43659810 | None:intergenic | 45.0% | |
| ! | CACCATTGCCCCCAAATTTT+GGG | + | chr3_4:43660106-43660125 | Msa0501910:intron | 45.0% |
| AACAAGTTCCTCGTGAACCT+GGG | - | chr3_4:43661264-43661283 | None:intergenic | 45.0% | |
| TAGGTGAAGAAGTCCTTCCT+CGG | - | chr3_4:43661303-43661322 | None:intergenic | 45.0% | |
| TCAACATCTGCAGGATCAAG+TGG | - | chr3_4:43661404-43661423 | None:intergenic | 45.0% | |
| !!! | CTTTTTTCTTCTAGCGGCTC+TGG | - | chr3_4:43661428-43661447 | None:intergenic | 45.0% |
| ACCAACGCCCATCTTTGTAA+CGG | - | chr3_4:43661478-43661497 | None:intergenic | 45.0% | |
| !! | AAAGATGGGCGTTGGTACAA+TGG | + | chr3_4:43661482-43661501 | Msa0501910:CDS | 45.0% |
| GAAGGGAAAATAGGCAACAC+AGG | + | chr3_4:43661782-43661801 | Msa0501910:intron | 45.0% | |
| !!! | GTCCTCACAGGTTTAGCTTT+TGG | + | chr3_4:43662009-43662028 | Msa0501910:intron | 45.0% |
| TCCCAAAAGCTAAACCTGTG+AGG | - | chr3_4:43662014-43662033 | None:intergenic | 45.0% | |
| TCAAAGGGTTCTTGTGTGAG+TGG | + | chr3_4:43662142-43662161 | Msa0501910:intron | 45.0% | |
| CAAAGGGTTCTTGTGTGAGT+GGG | + | chr3_4:43662143-43662162 | Msa0501910:intron | 45.0% | |
| GCTACAATCGTGCAGTTTAG+GGG | + | chr3_4:43662526-43662545 | Msa0501910:intron | 45.0% | |
| CAGTTTCAAGAGTTGGGTCA+GGG | - | chr3_4:43662685-43662704 | None:intergenic | 45.0% | |
| ACAGTTTCAAGAGTTGGGTC+AGG | - | chr3_4:43662686-43662705 | None:intergenic | 45.0% | |
| ! | GCATTGACATGTGTGAGAAG+TGG | - | chr3_4:43662872-43662891 | None:intergenic | 45.0% |
| !!! | CGCTATAGCATTTTTGGGGT+CGG | - | chr3_4:43663076-43663095 | None:intergenic | 45.0% |
| CGACCCCAAAAATGCTATAG+CGG | + | chr3_4:43663074-43663093 | Msa0501910:intron | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | + | chr3_4:43663075-43663094 | Msa0501910:intron | 45.0% | |
| ACAGATCCCAAATTGCTGAG+AGG | - | chr3_4:43663308-43663327 | None:intergenic | 45.0% | |
| GCTCAAAGACATAAGTGGAC+CGG | - | chr3_4:43663431-43663450 | None:intergenic | 45.0% | |
| CAGATGCGTACAGATCTGAA+AGG | + | chr3_4:43663571-43663590 | Msa0501910:intron | 45.0% | |
| GCGCCGTAAAGAATGAAAGA+AGG | + | chr3_4:43663593-43663612 | Msa0501910:intron | 45.0% | |
| AAAACCGCTATGCAGTGTTG+CGG | + | chr3_4:43663739-43663758 | Msa0501910:intron | 45.0% | |
| TATCTCATAACGCTACGCCA+TGG | + | chr3_4:43663777-43663796 | Msa0501910:intron | 45.0% | |
| AGTTAATAGCGGCGCTATAG+CGG | - | chr3_4:43663853-43663872 | None:intergenic | 45.0% | |
| AGCGCCGCTATTAACTACTA+TGG | + | chr3_4:43663857-43663876 | Msa0501910:intron | 45.0% | |
| GCGCCGCTATTAACTACTAT+GGG | + | chr3_4:43663858-43663877 | Msa0501910:intron | 45.0% | |
| !! | CCTCTGTTCCTTTTTAAGGG+TGG | - | chr3_4:43663923-43663942 | None:intergenic | 45.0% |
| CCACCCTTAAAAAGGAACAG+AGG | + | chr3_4:43663920-43663939 | Msa0501910:intron | 45.0% | |
| TGATGGGGTGATTCAGTGAT+TGG | - | chr3_4:43664072-43664091 | None:intergenic | 45.0% | |
| GAACTTGCACATCTGCACTT+TGG | - | chr3_4:43664448-43664467 | None:intergenic | 45.0% | |
| TTAGCAGCTTACCATGGGAT+AGG | - | chr3_4:43664509-43664528 | None:intergenic | 45.0% | |
| GAGGGGGCCAAAAATAAACA+AGG | - | chr3_4:43665105-43665124 | None:intergenic | 45.0% | |
| GCAGTCTCAAATGCAAATGC+AGG | + | chr3_4:43665652-43665671 | Msa0501910:CDS | 45.0% | |
| TCGCAGAACTTCCATCATCT+CGG | - | chr3_4:43665741-43665760 | None:intergenic | 45.0% | |
| !! | GAAGCTTGGTGCACAAGATA+TGG | + | chr3_4:43665759-43665778 | Msa0501910:CDS | 45.0% |
| AGGCATGGCTTCCAAAATGA+TGG | + | chr3_4:43665960-43665979 | Msa0501910:CDS | 45.0% | |
| AGCCTAAACCCATTCCTTCT+TGG | - | chr3_4:43665999-43666018 | None:intergenic | 45.0% | |
| ! | GGAATGGGTTTAGGCTTAAC+TGG | + | chr3_4:43666003-43666022 | Msa0501910:CDS | 45.0% |
| GGTTTAGGCTTAACTGGTCA+GGG | + | chr3_4:43666009-43666028 | Msa0501910:CDS | 45.0% | |
| GGTAGAACCTTCACTGGTAT+GGG | - | chr3_4:43666045-43666064 | None:intergenic | 45.0% | |
| TGGTAGAACCTTCACTGGTA+TGG | - | chr3_4:43666046-43666065 | None:intergenic | 45.0% | |
| TTAGGTGGTAGAACCTTCAC+TGG | - | chr3_4:43666051-43666070 | None:intergenic | 45.0% | |
| TGATCTAAGGACTGCTTAGG+TGG | - | chr3_4:43666066-43666085 | None:intergenic | 45.0% | |
| GCATGATCTAAGGACTGCTT+AGG | - | chr3_4:43666069-43666088 | None:intergenic | 45.0% | |
| CCAGAGGTGGTAAGAGAAAA+CGG | + | chr3_4:43666142-43666161 | Msa0501910:CDS | 45.0% | |
| CAGAGGTGGTAAGAGAAAAC+GGG | + | chr3_4:43666143-43666162 | Msa0501910:CDS | 45.0% | |
| AACACTCAACTAGCCATGCA+CGG | + | chr3_4:43666243-43666262 | Msa0501910:CDS | 45.0% | |
| AAGCCGCAAAGTAAAGGTTC+AGG | + | chr3_4:43666294-43666313 | Msa0501910:CDS | 45.0% | |
| AAAATTAGCCCAAACCCGCA+AGG | + | chr3_4:43666455-43666474 | Msa0501910:CDS | 45.0% | |
| ! | AACAACATCATCTGAGGCAG+AGG | - | chr3_4:43666508-43666527 | None:intergenic | 45.0% |
| TGACCACTCAGGTGAAAGAA+GGG | - | chr3_4:43666729-43666748 | None:intergenic | 45.0% | |
| !! | ATAACAAATAAAAAAAAATA+AGG | + | chr3_4:43661703-43661722 | Msa0501910:intron | 5.0% |
| !! | TAACAAATAAAAAAAAATAA+GGG | + | chr3_4:43661704-43661723 | Msa0501910:intron | 5.0% |
| !! | TATATGTTAATAAATAAATA+TGG | + | chr3_4:43663009-43663028 | Msa0501910:intron | 5.0% |
| TCGAGGAGTTCGGAATTGGT+TGG | - | chr3_4:43659781-43659800 | None:intergenic | 50.0% | |
| AACCAATTCCGAACTCCTCG+AGG | + | chr3_4:43659780-43659799 | Msa0501910:CDS | 50.0% | |
| TACCTCGAGGAGTTCGGAAT+TGG | - | chr3_4:43659785-43659804 | None:intergenic | 50.0% | |
| GGCACAGCAGTCAATCCTAA+AGG | - | chr3_4:43660041-43660060 | None:intergenic | 50.0% | |
| ! | GCACCATTGCCCCCAAATTT+TGG | + | chr3_4:43660105-43660124 | Msa0501910:intron | 50.0% |
| TGCCCAAAATTTGGGGGCAA+TGG | - | chr3_4:43660111-43660130 | None:intergenic | 50.0% | |
| AATAGCAGAGTTGTGGTCGC+TGG | + | chr3_4:43660693-43660712 | Msa0501910:intron | 50.0% | |
| GAACAAGTTCCTCGTGAACC+TGG | - | chr3_4:43661265-43661284 | None:intergenic | 50.0% | |
| ! | GGTTCACGAGGAACTTGTTC+AGG | + | chr3_4:43661265-43661284 | Msa0501910:intron | 50.0% |
| TCAGGCAATTAAGGATGCCG+AGG | + | chr3_4:43661283-43661302 | Msa0501910:CDS | 50.0% | |
| GCAATTAAGGATGCCGAGGA+AGG | + | chr3_4:43661287-43661306 | Msa0501910:CDS | 50.0% | |
| TCCGTTACAAAGATGGGCGT+TGG | + | chr3_4:43661474-43661493 | Msa0501910:CDS | 50.0% | |
| GAAATAGCGGTCATAGCGCT+AGG | - | chr3_4:43663107-43663126 | None:intergenic | 50.0% | |
| ! | ATGAGATAGCGGCGCAATAG+CGG | - | chr3_4:43663765-43663784 | None:intergenic | 50.0% |
| GGCGTAGCGTTATGAGATAG+CGG | - | chr3_4:43663776-43663795 | None:intergenic | 50.0% | |
| CGCCATGGCTTATTGCATAG+CGG | + | chr3_4:43663792-43663811 | Msa0501910:intron | 50.0% | |
| GACCGCTATGCAATAAGCCA+TGG | - | chr3_4:43663797-43663816 | None:intergenic | 50.0% | |
| AGTAACTGTCGCCTATCCCA+TGG | + | chr3_4:43664495-43664514 | Msa0501910:CDS | 50.0% | |
| GGACGGCTTCCAAATTGTTG+GGG | - | chr3_4:43665611-43665630 | None:intergenic | 50.0% | |
| GGGACGGCTTCCAAATTGTT+GGG | - | chr3_4:43665612-43665631 | None:intergenic | 50.0% | |
| AGGGACGGCTTCCAAATTGT+TGG | - | chr3_4:43665613-43665632 | None:intergenic | 50.0% | |
| CCATATGCTTGACCCAGCAA+GGG | - | chr3_4:43665632-43665651 | None:intergenic | 50.0% | |
| CCTTGCTGGGTCAAGCATAT+GGG | + | chr3_4:43665630-43665649 | Msa0501910:CDS | 50.0% | |
| TTCGTCCCATGACTCAAGCT+CGG | - | chr3_4:43665692-43665711 | None:intergenic | 50.0% | |
| GAGTCATGGGACGAAAAAGC+TGG | + | chr3_4:43665697-43665716 | Msa0501910:CDS | 50.0% | |
| TGGGACGAAAAAGCTGGAGT+TGG | + | chr3_4:43665703-43665722 | Msa0501910:CDS | 50.0% | |
| GATGGAAGTTCTGCGAAGCT+TGG | + | chr3_4:43665745-43665764 | Msa0501910:CDS | 50.0% | |
| TTCCTCTGAGCCGCTGTAAT+CGG | - | chr3_4:43665842-43665861 | None:intergenic | 50.0% | |
| TCAGAGGAAGAGGAACCACA+GGG | + | chr3_4:43665853-43665872 | Msa0501910:CDS | 50.0% | |
| GAAGAGGAACCACAGGGTTT+AGG | + | chr3_4:43665859-43665878 | Msa0501910:CDS | 50.0% | |
| AAGTGGGAGAACCATACCAG+AGG | + | chr3_4:43665940-43665959 | Msa0501910:CDS | 50.0% | |
| !! | CATTTTGGAAGCCATGCCTC+TGG | - | chr3_4:43665959-43665978 | None:intergenic | 50.0% |
| GGGTTTAGGCTTAACTGGTC+AGG | + | chr3_4:43666008-43666027 | Msa0501910:CDS | 50.0% | |
| AGGCTTAACTGGTCAGGGTA+TGG | + | chr3_4:43666014-43666033 | Msa0501910:CDS | 50.0% | |
| GGTTGATCCCATACCAGTGA+AGG | + | chr3_4:43666035-43666054 | Msa0501910:CDS | 50.0% | |
| CAAAGGAAGAAACGGACCAG+AGG | + | chr3_4:43666126-43666145 | Msa0501910:CDS | 50.0% | |
| ! | CCGTTTTCTCTTACCACCTC+TGG | - | chr3_4:43666145-43666164 | None:intergenic | 50.0% |
| CACGGTGAAGCTTCCAACAA+TGG | + | chr3_4:43666261-43666280 | Msa0501910:CDS | 50.0% | |
| ! | TCAAAGCATCTGCCTGCATG+AGG | - | chr3_4:43666626-43666645 | None:intergenic | 50.0% |
| ACCACTCAGGTGAAAGAAGG+GGG | - | chr3_4:43666727-43666746 | None:intergenic | 50.0% | |
| GACCACTCAGGTGAAAGAAG+GGG | - | chr3_4:43666728-43666747 | None:intergenic | 50.0% | |
| CTGACCACTCAGGTGAAAGA+AGG | - | chr3_4:43666730-43666749 | None:intergenic | 50.0% | |
| CAGTGTAATGCTGACCACTC+AGG | - | chr3_4:43666740-43666759 | None:intergenic | 50.0% | |
| ! | CAACAGCATGTTGGTGGGTC+AGG | - | chr3_4:43661002-43661021 | None:intergenic | 55.0% |
| GTCGATATCCCAGGTTCACG+AGG | + | chr3_4:43661253-43661272 | Msa0501910:intron | 55.0% | |
| GCACAGCACTGTGTCTGCTT+CGG | - | chr3_4:43661345-43661364 | None:intergenic | 55.0% | |
| ! | GGCTCTGGTTCAACATCTGC+AGG | - | chr3_4:43661413-43661432 | None:intergenic | 55.0% |
| AAGAGTTGGGTCAGGGACTC+AGG | - | chr3_4:43662678-43662697 | None:intergenic | 55.0% | |
| ACTGGAAGGATCCCAGCTTC+TGG | - | chr3_4:43663376-43663395 | None:intergenic | 55.0% | |
| GGCTTATTGCATAGCGGTCC+TGG | + | chr3_4:43663798-43663817 | Msa0501910:intron | 55.0% | |
| TGGCCCCCTCTTCTCTAAAC+TGG | + | chr3_4:43665115-43665134 | Msa0501910:intron | 55.0% | |
| ATTTGGAAGCCGTCCCTTGC+TGG | + | chr3_4:43665616-43665635 | Msa0501910:CDS | 55.0% | |
| TTTGGAAGCCGTCCCTTGCT+GGG | + | chr3_4:43665617-43665636 | Msa0501910:CDS | 55.0% | |
| ATGCTTGACCCAGCAAGGGA+CGG | - | chr3_4:43665628-43665647 | None:intergenic | 55.0% | |
| CCCTTGCTGGGTCAAGCATA+TGG | + | chr3_4:43665629-43665648 | Msa0501910:CDS | 55.0% | |
| CCCATATGCTTGACCCAGCA+AGG | - | chr3_4:43665633-43665652 | None:intergenic | 55.0% | |
| AGCAGCCGAGCTTGAGTCAT+GGG | + | chr3_4:43665684-43665703 | Msa0501910:CDS | 55.0% | |
| ATCCGATTACAGCGGCTCAG+AGG | + | chr3_4:43665837-43665856 | Msa0501910:CDS | 55.0% | |
| TTACAGCGGCTCAGAGGAAG+AGG | + | chr3_4:43665843-43665862 | Msa0501910:CDS | 55.0% | |
| CTCAGAGGAAGAGGAACCAC+AGG | + | chr3_4:43665852-43665871 | Msa0501910:CDS | 55.0% | |
| GGAGAACCATACCAGAGGCA+TGG | + | chr3_4:43665945-43665964 | Msa0501910:CDS | 55.0% | |
| TGGAAGCCATGCCTCTGGTA+TGG | - | chr3_4:43665954-43665973 | None:intergenic | 55.0% | |
| AGGAAGAAACGGACCAGAGG+TGG | + | chr3_4:43666129-43666148 | Msa0501910:CDS | 55.0% | |
| GTTGGAAGCTTCACCGTGCA+TGG | - | chr3_4:43666259-43666278 | None:intergenic | 55.0% | |
| AGCCAATGCCTTGCGGGTTT+GGG | - | chr3_4:43666466-43666485 | None:intergenic | 55.0% | |
| CACTCAGGTGAAAGAAGGGG+GGG | - | chr3_4:43666725-43666744 | None:intergenic | 55.0% | |
| CCACTCAGGTGAAAGAAGGG+GGG | - | chr3_4:43666726-43666745 | None:intergenic | 55.0% | |
| GCAGAGTTGTGGTCGCTGGA+AGG | + | chr3_4:43660697-43660716 | Msa0501910:intron | 60.0% | |
| ! | ATGTTGGTGGGTCAGGCTGG+GGG | - | chr3_4:43660995-43661014 | None:intergenic | 60.0% |
| ! | CATGTTGGTGGGTCAGGCTG+GGG | - | chr3_4:43660996-43661015 | None:intergenic | 60.0% |
| ! | GCATGTTGGTGGGTCAGGCT+GGG | - | chr3_4:43660997-43661016 | None:intergenic | 60.0% |
| ! | AGCATGTTGGTGGGTCAGGC+TGG | - | chr3_4:43660998-43661017 | None:intergenic | 60.0% |
| GTCATGGCAGCATCCGCTTC+TGG | - | chr3_4:43663488-43663507 | None:intergenic | 60.0% | |
| GGCGCTATAGCGGCCAATAG+CGG | - | chr3_4:43663843-43663862 | None:intergenic | 60.0% | |
| GAGCAGCCGAGCTTGAGTCA+TGG | + | chr3_4:43665683-43665702 | Msa0501910:CDS | 60.0% | |
| AGCCCAAACCCGCAAGGCAT+TGG | + | chr3_4:43666461-43666480 | Msa0501910:CDS | 60.0% | |
| CAGCCAATGCCTTGCGGGTT+TGG | - | chr3_4:43666467-43666486 | None:intergenic | 60.0% | |
| !! | AACCCGCAAGGCATTGGCTG+AGG | + | chr3_4:43666467-43666486 | Msa0501910:CDS | 60.0% |
| AGCCTCAGCCAATGCCTTGC+GGG | - | chr3_4:43666472-43666491 | None:intergenic | 60.0% | |
| CAGCCTCAGCCAATGCCTTG+CGG | - | chr3_4:43666473-43666492 | None:intergenic | 60.0% | |
| CCCCCCTTCTTTCACCTGAG+TGG | + | chr3_4:43666723-43666742 | Msa0501910:three_prime_UTR | 60.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | + | chr3_4:43663050-43663069 | Msa0501910:intron | 65.0% |
| GCGGCCGCAACACTGCATAG+CGG | - | chr3_4:43663746-43663765 | None:intergenic | 65.0% | |
| CCAATAGCGGCCGCGCGGTG+CGG | - | chr3_4:43663830-43663849 | None:intergenic | 75.0% | |
| AGCGGCCAATAGCGGCCGCG+CGG | - | chr3_4:43663835-43663854 | None:intergenic | 75.0% | |
| ! | CTGGACCGCACCGCACCGCG+CGG | + | chr3_4:43663817-43663836 | Msa0501910:intron | 80.0% |
| ! | CCGCACCGCGCGGCCGCTAT+TGG | + | chr3_4:43663827-43663846 | Msa0501910:intron | 80.0% |
| ! | CGCGCGGTGCGGTGCGGTCC+AGG | - | chr3_4:43663819-43663838 | None:intergenic | 85.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | - | chr3_4:43663825-43663844 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 43659618 | 43666956 | 43659618 | ID=Msa0501910;Name=Msa0501910 |
| chr3_4 | mRNA | 43659618 | 43666956 | 43659618 | ID=Msa0501910-mRNA-1;Parent=Msa0501910;Name=Msa0501910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=58|0.5|0.6|1|0.5|0.4|5|393|508 |
| chr3_4 | exon | 43659618 | 43659801 | 43659618 | ID=Msa0501910-mRNA-1:exon:9260;Parent=Msa0501910-mRNA-1 |
| chr3_4 | exon | 43661266 | 43661365 | 43661266 | ID=Msa0501910-mRNA-1:exon:9261;Parent=Msa0501910-mRNA-1 |
| chr3_4 | exon | 43661387 | 43661634 | 43661387 | ID=Msa0501910-mRNA-1:exon:9262;Parent=Msa0501910-mRNA-1 |
| chr3_4 | exon | 43664456 | 43664516 | 43664456 | ID=Msa0501910-mRNA-1:exon:9263;Parent=Msa0501910-mRNA-1 |
| chr3_4 | exon | 43665572 | 43666956 | 43665572 | ID=Msa0501910-mRNA-1:exon:9264;Parent=Msa0501910-mRNA-1 |
| chr3_4 | five_prime_UTR | 43659618 | 43659675 | 43659618 | ID=Msa0501910-mRNA-1:five_prime_utr;Parent=Msa0501910-mRNA-1 |
| chr3_4 | CDS | 43659676 | 43659801 | 43659676 | ID=Msa0501910-mRNA-1:cds;Parent=Msa0501910-mRNA-1 |
| chr3_4 | CDS | 43661266 | 43661365 | 43661266 | ID=Msa0501910-mRNA-1:cds;Parent=Msa0501910-mRNA-1 |
| chr3_4 | CDS | 43661387 | 43661634 | 43661387 | ID=Msa0501910-mRNA-1:cds;Parent=Msa0501910-mRNA-1 |
| chr3_4 | CDS | 43664456 | 43664516 | 43664456 | ID=Msa0501910-mRNA-1:cds;Parent=Msa0501910-mRNA-1 |
| chr3_4 | CDS | 43665572 | 43666563 | 43665572 | ID=Msa0501910-mRNA-1:cds;Parent=Msa0501910-mRNA-1 |
| chr3_4 | three_prime_UTR | 43666564 | 43666956 | 43666564 | ID=Msa0501910-mRNA-1:three_prime_utr;Parent=Msa0501910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
