AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385500 MtrunA17_Chr2g0319561 100.000 114 0 0 37 150 1 114 3.06e-82 237
Msa0385500 MtrunA17_Chr4g0024171 87.719 114 13 1 37 150 1 113 1.27e-71 210
Msa0385500 MtrunA17_Chr3g0098971 77.193 114 24 1 37 150 1 112 1.46e-59 180
Msa0385500 MtrunA17_Chr5g0444201 72.973 111 28 1 40 150 2 110 6.37e-55 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385500 AT4G27130.1 86.842 114 14 1 37 150 1 113 4.42e-71 209
Msa0385500 AT5G54760.2 85.965 114 15 1 37 150 1 113 2.34e-70 207
Msa0385500 AT5G54760.4 85.965 114 15 1 37 150 1 113 2.34e-70 207
Msa0385500 AT5G54760.3 85.965 114 15 1 37 150 1 113 2.34e-70 207
Msa0385500 AT5G54760.1 85.965 114 15 1 37 150 1 113 2.34e-70 207
Msa0385500 AT1G54290.1 85.088 114 16 1 37 150 1 113 1.20e-69 206
Msa0385500 AT5G54940.1 74.561 114 27 1 37 150 1 112 8.09e-58 176
Msa0385500 AT5G54940.3 74.561 114 27 1 37 150 1 112 8.09e-58 176
Msa0385500 AT5G54940.2 74.561 114 27 1 37 150 1 112 8.09e-58 176

Find 54 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTGGGGCATTCTATTT+TGG 0.153254 3_1:-89033613 Msa0385500:CDS
AATGCTGAGGACGCCGGTGC+TGG 0.285317 3_1:-89032592 Msa0385500:CDS
AATTATAGGTTTGAGCTATC+TGG 0.291587 3_1:-89033635 Msa0385500:intron
AAGGAGCATATTAAAATTCA+TGG 0.292939 3_1:-89031306 Msa0385500:CDS
ACAAGTGTTAAAGTTGTATC+TGG 0.320511 3_1:-89031262 Msa0385500:three_prime_UTR
TTCGCTGCTGTATACGAATA+TGG 0.326573 3_1:+89032551 None:intergenic
ATTCATTACCTGGACTAAAA+AGG 0.327921 3_1:+89032282 None:intergenic
ACAGTTGTGATGCAGTATTA+TGG 0.339469 3_1:-89031176 Msa0385500:three_prime_UTR
TATGTATCAAAGGAGTTTAA+AGG 0.362449 3_1:-89031119 Msa0385500:three_prime_UTR
CCTGTCCTTGCTCTGGGTCC+TGG 0.375764 3_1:+89032422 None:intergenic
GGCATCTGAAATCTTGAATC+TGG 0.385123 3_1:+89031021 None:intergenic
GAGCTTCCTGTACACTATTC+CGG 0.386565 3_1:+89037550 None:intergenic
CATTTAACATTTCAGATGCT+TGG 0.412230 3_1:-89031081 Msa0385500:three_prime_UTR
TTCAAGATTTCAGATGCCTT+TGG 0.413205 3_1:-89031016 Msa0385500:three_prime_UTR
AGACATACCTGTCCTTGCTC+TGG 0.415595 3_1:+89032415 None:intergenic
TACAACAAAACTCCTTCTTA+AGG 0.416659 3_1:+89032458 None:intergenic
ATTCATGGTTTCTGAGCAGC+TGG 0.441134 3_1:-89031291 Msa0385500:exon
TTGTGGAATTTCTTGTGGTC+TGG 0.441805 3_1:-89031210 Msa0385500:three_prime_UTR
GTTTGAGCTATCTGGTTGGT+GGG 0.452122 3_1:-89033627 Msa0385500:CDS
GATTTCAGATGCCTTTGGCT+TGG 0.455364 3_1:-89031011 Msa0385500:three_prime_UTR
GTATCTGGCTCATTTCGAGC+TGG 0.462911 3_1:-89031247 Msa0385500:three_prime_UTR
GACATACCTGTCCTTGCTCT+GGG 0.463686 3_1:+89032416 None:intergenic
TGAATTCTTTCTTCAATCCC+TGG 0.465760 3_1:+89032503 None:intergenic
GGTTTGAGCTATCTGGTTGG+TGG 0.470349 3_1:-89033628 Msa0385500:CDS
GTGTAGGTTATTCAACTTCA+AGG 0.470369 3_1:-89032328 Msa0385500:intron
TTGTAATGGTACAGTTGTCC+AGG 0.470439 3_1:-89032440 Msa0385500:CDS
ATGCTGAGGACGCCGGTGCT+GGG 0.477491 3_1:-89032591 Msa0385500:CDS
TCAGCATTTGCCTCAGCAAA+AGG 0.478903 3_1:+89032607 None:intergenic
TATCTGGCTCATTTCGAGCT+GGG 0.490892 3_1:-89031246 Msa0385500:three_prime_UTR
ATTCGTATACAGCAGCGAAA+TGG 0.491023 3_1:-89032547 Msa0385500:CDS
ATGGAATTTATGACATTATG+TGG 0.492829 3_1:-89031157 Msa0385500:three_prime_UTR
TGATTGATCAACAATTAAAG+AGG 0.504595 3_1:-89030979 Msa0385500:three_prime_UTR
CGCCGGTGCTGGGTCATCAA+AGG 0.522725 3_1:-89032581 Msa0385500:CDS
TGTGATTGTGGAATTTCTTG+TGG 0.543118 3_1:-89031215 Msa0385500:three_prime_UTR
ACAGGCTGGAATCGTGAAGA+AGG 0.545416 3_1:-89031325 Msa0385500:intron
TTTGAGCTATCTGGTTGGTG+GGG 0.548016 3_1:-89033626 Msa0385500:CDS
TCCTCACCGGAATAGTGTAC+AGG 0.550923 3_1:-89037556 Msa0385500:CDS
AAAAGCTTGACAACTGTCCA+GGG 0.558576 3_1:-89032520 Msa0385500:CDS
TCTGCATCATTATGATCTCA+AGG 0.569046 3_1:-89037592 None:intergenic
GCTTCAATAATATGTATCAA+AGG 0.574990 3_1:-89031129 Msa0385500:three_prime_UTR
TTCAACTTCAAGGCGATCAG+AGG 0.577444 3_1:-89032318 Msa0385500:CDS
GAGGCAAATGCTGAGGACGC+CGG 0.578099 3_1:-89032598 Msa0385500:CDS
CTCCTTTGATGACCCAGCAC+CGG 0.583753 3_1:+89032579 None:intergenic
GATTCTGAAAGACCTTAAGA+AGG 0.584832 3_1:-89032470 Msa0385500:CDS
CCAGGACCCAGAGCAAGGAC+AGG 0.587475 3_1:-89032422 Msa0385500:intron
TAGTGTACAGGAAGCTCCCA+AGG 0.588685 3_1:-89037544 Msa0385500:intron
CAAAACTTGTTCCAAGCCAA+AGG 0.597344 3_1:+89031000 None:intergenic
GCACAAATTCCTACTGCCTA+CGG 0.609588 3_1:-89033563 Msa0385500:intron
ATAGGTTTGAGCTATCTGGT+TGG 0.616390 3_1:-89033631 Msa0385500:intron
GTTGTCCAGGACCCAGAGCA+AGG 0.630590 3_1:-89032427 Msa0385500:CDS
TGGGTATATATATGTGATTG+TGG 0.634136 3_1:-89031227 Msa0385500:three_prime_UTR
TGTTTGTTGAAAGTCCTCAC+CGG 0.646674 3_1:-89037569 Msa0385500:CDS
TCCTGTACACTATTCCGGTG+AGG 0.678014 3_1:+89037555 None:intergenic
TCCAACTTACCGTAGGCAGT+AGG 0.690363 3_1:+89033554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAATTTTGAATTATAAAA+TGG + chr3_1:89032930-89032949 None:intergenic 10.0%
!!! AAATATAGAGAAATTTTTTT+GGG + chr3_1:89033833-89033852 None:intergenic 10.0%
!!! AAAATATAGAGAAATTTTTT+TGG + chr3_1:89033834-89033853 None:intergenic 10.0%
!! TTATATTGTAAATGAAATTT+GGG - chr3_1:89034364-89034383 Msa0385500:intron 10.0%
!!! TTTGAATTTTTATTATCTTT+AGG - chr3_1:89035167-89035186 Msa0385500:intron 10.0%
!! GTTATAAGTAAAAAAAAAAT+AGG + chr3_1:89035404-89035423 None:intergenic 10.0%
!!! AATATAGAGAAATTTTTTTG+GGG + chr3_1:89033832-89033851 None:intergenic 15.0%
!! GTTATATTGTAAATGAAATT+TGG - chr3_1:89034363-89034382 Msa0385500:intron 15.0%
!! TATATTGTAAATGAAATTTG+GGG - chr3_1:89034365-89034384 Msa0385500:intron 15.0%
!!! ATAATTTGTGTATCAATTTT+AGG - chr3_1:89034406-89034425 Msa0385500:intron 15.0%
!! AATAAGAAACAATTAATTCA+CGG + chr3_1:89034445-89034464 None:intergenic 15.0%
!! AAGATATTGTAAATGAAATT+TGG - chr3_1:89034468-89034487 Msa0385500:intron 15.0%
!! AGATATTGTAAATGAAATTT+GGG - chr3_1:89034469-89034488 Msa0385500:intron 15.0%
!!! TTGTAAATGTAAATGAATTT+TGG - chr3_1:89034579-89034598 Msa0385500:intron 15.0%
!!! TGTAAATGTAAATGAATTTT+GGG - chr3_1:89034580-89034599 Msa0385500:intron 15.0%
!!! AATGTTTTGATTCTAATTAT+AGG - chr3_1:89034883-89034902 Msa0385500:intron 15.0%
!!! TTTTCTAAAATAGTTTTTTC+TGG - chr3_1:89035533-89035552 Msa0385500:intron 15.0%
!!! TTTCTAAAATAGTTTTTTCT+GGG - chr3_1:89035534-89035553 Msa0385500:intron 15.0%
!!! GTTTTTAATGTTTATACTTT+GGG - chr3_1:89035581-89035600 Msa0385500:intron 15.0%
!!! AAATTGAATTTTTAAAGCTT+AGG - chr3_1:89035716-89035735 Msa0385500:intron 15.0%
!!! CTTCAAATAACATTTTTTTA+TGG - chr3_1:89036182-89036201 Msa0385500:intron 15.0%
!! AGAAAATATCAAAAGTAAAA+CGG + chr3_1:89036381-89036400 None:intergenic 15.0%
!! TAAACATAAAATAATGTCAA+AGG + chr3_1:89036608-89036627 None:intergenic 15.0%
!! TTTACCCATAAATTTATATT+TGG - chr3_1:89036899-89036918 Msa0385500:intron 15.0%
!! TCAATAATACTTCAAATGTA+TGG + chr3_1:89032350-89032369 None:intergenic 20.0%
!!! ATACATTTGAAGTATTATTG+AGG - chr3_1:89032349-89032368 Msa0385500:intron 20.0%
!!! ACATCAACTACTATTTTTTT+TGG - chr3_1:89032508-89032527 Msa0385500:CDS 20.0%
!! ATATGAAAATGTTACAATCA+GGG + chr3_1:89032737-89032756 None:intergenic 20.0%
!! AATATGAAAATGTTACAATC+AGG + chr3_1:89032738-89032757 None:intergenic 20.0%
!! AAATGGGAATATGTATTATT+TGG + chr3_1:89032913-89032932 None:intergenic 20.0%
!! AATGTTAATAGTGTTAATTG+TGG - chr3_1:89033024-89033043 Msa0385500:intron 20.0%
!!! ACGTTTTATACAATGTTTAA+TGG - chr3_1:89033383-89033402 Msa0385500:intron 20.0%
!!! AAATTTTTTTGGGGTATTTT+GGG + chr3_1:89033823-89033842 None:intergenic 20.0%
!! AAATTTCGATTTAGAGAAAA+AGG + chr3_1:89034017-89034036 None:intergenic 20.0%
!!! AATTTTCGCGTTTTAATTTT+AGG - chr3_1:89034032-89034051 Msa0385500:intron 20.0%
!!! ATTTTCGCGTTTTAATTTTA+GGG - chr3_1:89034033-89034052 Msa0385500:intron 20.0%
!!! TTCAATTTGCCTAAATTTTA+AGG - chr3_1:89034082-89034101 Msa0385500:intron 20.0%
!!! TCAATTTGCCTAAATTTTAA+GGG - chr3_1:89034083-89034102 Msa0385500:intron 20.0%
!! AATAAAACCCCTTAAAATTT+AGG + chr3_1:89034094-89034113 None:intergenic 20.0%
!!! AAATTTTAAGGGGTTTTATT+TGG - chr3_1:89034094-89034113 Msa0385500:intron 20.0%
!!! TTGTTAATTTTGTGAAGTTT+CGG - chr3_1:89034170-89034189 Msa0385500:intron 20.0%
!!! AGCTGTATATTTGAATTTTT+TGG - chr3_1:89034279-89034298 Msa0385500:intron 20.0%
!!! GCTGTATATTTGAATTTTTT+GGG - chr3_1:89034280-89034299 Msa0385500:intron 20.0%
!!! TTTTTTGGGTATCAATTTTT+AGG - chr3_1:89034294-89034313 Msa0385500:intron 20.0%
!! ATATTGTAAATGAAATTTGG+GGG - chr3_1:89034366-89034385 Msa0385500:intron 20.0%
!! GATATTGTAAATGAAATTTG+GGG - chr3_1:89034470-89034489 Msa0385500:intron 20.0%
!! ATATTGTAAATGAAATTTGG+GGG - chr3_1:89034366-89034385 Msa0385500:intron 20.0%
!! TTGTAAAGAAATATTGTGAA+TGG - chr3_1:89034501-89034520 Msa0385500:intron 20.0%
!!! AATATTGTGAATGGATTTTT+AGG - chr3_1:89034510-89034529 Msa0385500:intron 20.0%
!!! GTAAATGTAAATGAATTTTG+GGG - chr3_1:89034581-89034600 Msa0385500:intron 20.0%
!!! TAAATGTAAATGAATTTTGG+GGG - chr3_1:89034582-89034601 Msa0385500:intron 20.0%
!!! GATAGATATATTGTTTTTGT+TGG - chr3_1:89034788-89034807 Msa0385500:intron 20.0%
!! CTGAATTATAATAACAATCT+CGG + chr3_1:89034861-89034880 None:intergenic 20.0%
!!! ATATTGCTTTTACTTTTACT+TGG - chr3_1:89035365-89035384 Msa0385500:intron 20.0%
!!! TTCTAAAATAGTTTTTTCTG+GGG - chr3_1:89035535-89035554 Msa0385500:intron 20.0%
!!! GGTTTTTAATGTTTATACTT+TGG - chr3_1:89035580-89035599 Msa0385500:intron 20.0%
!!! TTTGATCTGAAATAGTATTT+TGG - chr3_1:89035676-89035695 Msa0385500:intron 20.0%
!!! TTGATCTGAAATAGTATTTT+GGG - chr3_1:89035677-89035696 Msa0385500:intron 20.0%
!!! ATAACATTTTTTTATGGTGT+AGG - chr3_1:89036188-89036207 Msa0385500:intron 20.0%
!! GTAAAACGGAAAAATAAAAA+GGG + chr3_1:89036367-89036386 None:intergenic 20.0%
!! AGTAAAACGGAAAAATAAAA+AGG + chr3_1:89036368-89036387 None:intergenic 20.0%
!!! TTTACTTTTGATATTTTCTG+TGG - chr3_1:89036382-89036401 Msa0385500:intron 20.0%
!!! AAAAAGAAGTCTGATTTTAA+AGG - chr3_1:89036473-89036492 Msa0385500:intron 20.0%
!!! GTAAAAATAGTTGATATTCT+AGG + chr3_1:89036700-89036719 None:intergenic 20.0%
!!! ATCAACTATTTTTACTAAAC+AGG - chr3_1:89036705-89036724 Msa0385500:intron 20.0%
!!! TCAACTATTTTTACTAAACA+GGG - chr3_1:89036706-89036725 Msa0385500:intron 20.0%
!! TCCACCAAATATAAATTTAT+GGG + chr3_1:89036906-89036925 None:intergenic 20.0%
!! ATCCACCAAATATAAATTTA+TGG + chr3_1:89036907-89036926 None:intergenic 20.0%
!! TTGGTTATTGAAGACAATTT+TGG - chr3_1:89031533-89031552 Msa0385500:intron 25.0%
! ATTCATTACCTCTTTCTATT+TGG - chr3_1:89031562-89031581 Msa0385500:intron 25.0%
!!! CTATTCTATTCTGTTTTGAT+GGG - chr3_1:89031644-89031663 Msa0385500:intron 25.0%
! TACAATAAAGGAATACATCA+AGG + chr3_1:89032708-89032727 None:intergenic 25.0%
!!! AGTTTTGATTCCATATAGTA+GGG - chr3_1:89032839-89032858 Msa0385500:intron 25.0%
! TTAATAGTGTTAATTGTGGT+GGG - chr3_1:89033028-89033047 Msa0385500:intron 25.0%
!!! TGGATAAGCTTTTAAAATAG+TGG + chr3_1:89033101-89033120 None:intergenic 25.0%
!!! CTATTTTAAAAGCTTATCCA+TGG - chr3_1:89033101-89033120 Msa0385500:intron 25.0%
! ATAGTGAACTTCATATAAAG+TGG - chr3_1:89033261-89033280 Msa0385500:intron 25.0%
!!! TCTAATCCCTTATTTTTTAG+CGG - chr3_1:89033535-89033554 Msa0385500:intron 25.0%
! TTTGATCCGCTAAAAAATAA+GGG + chr3_1:89033544-89033563 None:intergenic 25.0%
!!! GAAATTTTTTTGGGGTATTT+TGG + chr3_1:89033824-89033843 None:intergenic 25.0%
! AAGAATAGAAACCCTAAAAT+TGG + chr3_1:89033927-89033946 None:intergenic 25.0%
! GGCAAATTGAAATCAAAATT+AGG + chr3_1:89034073-89034092 None:intergenic 25.0%
!! CAATTTGCCTAAATTTTAAG+GGG - chr3_1:89034084-89034103 Msa0385500:intron 25.0%
! CTAAATATCAACAAGAGAAA+TGG + chr3_1:89034146-89034165 None:intergenic 25.0%
!! TGTTAATTTTGTGAAGTTTC+GGG - chr3_1:89034171-89034190 Msa0385500:intron 25.0%
!! AAGCTTTTATCTTTGAATCA+TGG - chr3_1:89034249-89034268 Msa0385500:intron 25.0%
!!! TATTGTTTTTGTTGGATTTG+TGG - chr3_1:89034796-89034815 Msa0385500:intron 25.0%
! ATAGAAGAATTTCTCATTTC+TGG + chr3_1:89035274-89035293 None:intergenic 25.0%
! TTAAGCATCTTGTTCAATAA+TGG + chr3_1:89035632-89035651 None:intergenic 25.0%
! TCAAAGTTATGTACAATGAT+TGG + chr3_1:89035661-89035680 None:intergenic 25.0%
!!! TGATCTGAAATAGTATTTTG+GGG - chr3_1:89035678-89035697 Msa0385500:intron 25.0%
! AGATGAAGAATAGAAATAGA+TGG - chr3_1:89035807-89035826 Msa0385500:intron 25.0%
!! AATGTTATTTGAAGCAACAA+GGG + chr3_1:89036176-89036195 None:intergenic 25.0%
!! AAATGTTATTTGAAGCAACA+AGG + chr3_1:89036177-89036196 None:intergenic 25.0%
! TTAATGAAAATAGAGCTGTT+TGG - chr3_1:89036532-89036551 Msa0385500:intron 25.0%
! TTATTTGAATTAAGCATAGC+AGG + chr3_1:89036571-89036590 None:intergenic 25.0%
! ACCCATAAATTTATATTTGG+TGG - chr3_1:89036902-89036921 Msa0385500:intron 25.0%
! TATTCATGTCATTCATCATA+TGG - chr3_1:89037053-89037072 Msa0385500:intron 25.0%
!! AAGGAGCATATTAAAATTCA+TGG - chr3_1:89037226-89037245 Msa0385500:intron 25.0%
! ATGGAATTTATGACATTATG+TGG - chr3_1:89037375-89037394 Msa0385500:intron 25.0%
! GCTTCAATAATATGTATCAA+AGG - chr3_1:89037403-89037422 Msa0385500:intron 25.0%
! TATGTATCAAAGGAGTTTAA+AGG - chr3_1:89037413-89037432 Msa0385500:intron 25.0%
! TGATTGATCAACAATTAAAG+AGG - chr3_1:89037553-89037572 Msa0385500:CDS 25.0%
TCAACAATAACAATCACCTT+GGG + chr3_1:89031007-89031026 None:intergenic 30.0%
ATCAACAATAACAATCACCT+TGG + chr3_1:89031008-89031027 None:intergenic 30.0%
!! ATTGTTGATTCAGTTTGCTT+TGG - chr3_1:89031019-89031038 Msa0385500:three_prime_UTR 30.0%
AACAGAATCAACTCAACAAT+CGG + chr3_1:89031083-89031102 None:intergenic 30.0%
!! TTTCTTCATCAGTAGTTTTG+TGG - chr3_1:89031383-89031402 Msa0385500:intron 30.0%
!!! TGCACAATTGTACTAGTTTT+TGG - chr3_1:89031407-89031426 Msa0385500:intron 30.0%
CCATCAAAACAGAATAGAAT+AGG + chr3_1:89031646-89031665 None:intergenic 30.0%
!! CCTATTCTATTCTGTTTTGA+TGG - chr3_1:89031643-89031662 Msa0385500:intron 30.0%
TACTGCTTGAGATCAAATAT+TGG - chr3_1:89032156-89032175 Msa0385500:intron 30.0%
! GATCAAATATTGGTTGGATT+TGG - chr3_1:89032166-89032185 Msa0385500:intron 30.0%
! AATATTGGTTGGATTTGGTT+TGG - chr3_1:89032171-89032190 Msa0385500:intron 30.0%
CATTGCTTACATATCTACTT+TGG - chr3_1:89032204-89032223 Msa0385500:intron 30.0%
!!! AAGTTGTTTTGGTTAGTAGT+TGG - chr3_1:89032388-89032407 Msa0385500:intron 30.0%
!! ATTTTGCAAGATGTTTCTGT+TGG - chr3_1:89032418-89032437 Msa0385500:intron 30.0%
!!! GCATTTTAATTTCCTCTGTT+TGG - chr3_1:89032545-89032564 Msa0385500:CDS 30.0%
GAGTATTAGTTACTAGTTAG+TGG - chr3_1:89032667-89032686 Msa0385500:intron 30.0%
ATACATCAAGGCCTATTTAT+AGG + chr3_1:89032696-89032715 None:intergenic 30.0%
TCAGGGAAAAGTTACAATAA+AGG + chr3_1:89032720-89032739 None:intergenic 30.0%
!!! GAGTTTTGATTCCATATAGT+AGG - chr3_1:89032838-89032857 Msa0385500:intron 30.0%
!!! GTTTTGATTCCATATAGTAG+GGG - chr3_1:89032840-89032859 Msa0385500:intron 30.0%
!! TTTTGATTCCATATAGTAGG+GGG - chr3_1:89032841-89032860 Msa0385500:intron 30.0%
GTTAATAGTGTTAATTGTGG+TGG - chr3_1:89033027-89033046 Msa0385500:intron 30.0%
!! AATGAGAATGGTAATGGTAA+TGG + chr3_1:89033146-89033165 None:intergenic 30.0%
TTTCTTGTTGACAATGAGAA+TGG + chr3_1:89033158-89033177 None:intergenic 30.0%
CAAATGTTATACAGAAGGTT+AGG + chr3_1:89033201-89033220 None:intergenic 30.0%
AAAAATAAGGGATTAGACGA+CGG + chr3_1:89033532-89033551 None:intergenic 30.0%
GTTTGATCCGCTAAAAAATA+AGG + chr3_1:89033545-89033564 None:intergenic 30.0%
! TTTGCTATCCACTCTAAATT+TGG - chr3_1:89033568-89033587 Msa0385500:CDS 30.0%
TTTGGGAAAGAGAGAAAATA+GGG + chr3_1:89033865-89033884 None:intergenic 30.0%
! ATCGTTCCTTATCCAATTTT+AGG - chr3_1:89033912-89033931 Msa0385500:intron 30.0%
! TCGTTCCTTATCCAATTTTA+GGG - chr3_1:89033913-89033932 Msa0385500:intron 30.0%
AGAAACCCTAAAATTGGATA+AGG + chr3_1:89033921-89033940 None:intergenic 30.0%
! TTTTACCTGATCCTAGATTA+GGG + chr3_1:89033981-89034000 None:intergenic 30.0%
! ATTTTACCTGATCCTAGATT+AGG + chr3_1:89033982-89034001 None:intergenic 30.0%
! ATTTTTGAACGAGTAAGTCT+TGG - chr3_1:89034205-89034224 Msa0385500:intron 30.0%
! TTTTTGAACGAGTAAGTCTT+GGG - chr3_1:89034206-89034225 Msa0385500:intron 30.0%
!!! GGTATCAATTTTTAGGTGTT+TGG - chr3_1:89034301-89034320 Msa0385500:intron 30.0%
! TTAAAAGCACAGCTAAACAT+GGG + chr3_1:89034657-89034676 None:intergenic 30.0%
GAAATTATCCATGCTTATTG+TGG - chr3_1:89034720-89034739 Msa0385500:intron 30.0%
AATTATAGGTTTGAGCTATC+TGG - chr3_1:89034897-89034916 Msa0385500:intron 30.0%
TCAATTATACTGTGTACTGT+TGG - chr3_1:89035095-89035114 Msa0385500:intron 30.0%
CAATTATACTGTGTACTGTT+GGG - chr3_1:89035096-89035115 Msa0385500:intron 30.0%
GAATTTACTAGTCAATTGTC+AGG + chr3_1:89035208-89035227 None:intergenic 30.0%
AAAAAATTCTGTGCGATTCT+TGG + chr3_1:89035516-89035535 None:intergenic 30.0%
ATATGATATATGACTCCTGT+GGG - chr3_1:89035880-89035899 Msa0385500:intron 30.0%
! AATTTTAGATCCTTTTGCTG+AGG - chr3_1:89035915-89035934 Msa0385500:intron 30.0%
TACAACAAAACTCCTTCTTA+AGG + chr3_1:89036077-89036096 None:intergenic 30.0%
!!! AAGAAGGAGTTTTGTTGTAA+TGG - chr3_1:89036078-89036097 Msa0385500:intron 30.0%
! ATGTTATTTGAAGCAACAAG+GGG + chr3_1:89036175-89036194 None:intergenic 30.0%
ATTCATTACCTGGACTAAAA+AGG + chr3_1:89036253-89036272 None:intergenic 30.0%
AATGAATGACTTCACATCTT+TGG - chr3_1:89036266-89036285 Msa0385500:intron 30.0%
!! ATAAAAAGGGTACTTAACCA+GGG + chr3_1:89036354-89036373 None:intergenic 30.0%
!! AATAAAAAGGGTACTTAACC+AGG + chr3_1:89036355-89036374 None:intergenic 30.0%
TATCTAAATCCGTTCTATAG+AGG + chr3_1:89036935-89036954 None:intergenic 30.0%
GATTTAGATACGTAAATCAC+TGG - chr3_1:89036945-89036964 Msa0385500:intron 30.0%
AGAATATAACAGATCGTTGT+AGG + chr3_1:89036979-89036998 None:intergenic 30.0%
AATAAACGTTTGTCACTACA+TGG + chr3_1:89037037-89037056 None:intergenic 30.0%
ACAAGTGTTAAAGTTGTATC+TGG - chr3_1:89037270-89037289 Msa0385500:intron 30.0%
TGGGTATATATATGTGATTG+TGG - chr3_1:89037305-89037324 Msa0385500:intron 30.0%
CATTTAACATTTCAGATGCT+TGG - chr3_1:89037451-89037470 Msa0385500:intron 30.0%
!! ACAAGTTGTTGAGTTGATTC+TGG - chr3_1:89031048-89031067 Msa0385500:three_prime_UTR 35.0%
!! TTGTTGAGTTGATTCTGTTC+TGG - chr3_1:89031084-89031103 Msa0385500:three_prime_UTR 35.0%
! TTTGACTGATTCATTGCAAC+TGG - chr3_1:89031108-89031127 Msa0385500:three_prime_UTR 35.0%
!!! GATTCATTGCAACTGGTTTT+TGG - chr3_1:89031115-89031134 Msa0385500:three_prime_UTR 35.0%
!!! GCAACTGGTTTTTGGATATT+TGG - chr3_1:89031123-89031142 Msa0385500:three_prime_UTR 35.0%
!! TTTGGATATTTGGTTTGAGC+TGG - chr3_1:89031133-89031152 Msa0385500:three_prime_UTR 35.0%
TGTTTGATTCAGAAGCTGTT+TGG - chr3_1:89031189-89031208 Msa0385500:three_prime_UTR 35.0%
! TGTTTGGTTCAGAATCTGTT+TGG - chr3_1:89031241-89031260 Msa0385500:three_prime_UTR 35.0%
! TGTTTGGTTCAGAATCTGTT+TGG - chr3_1:89031241-89031260 Msa0385500:three_prime_UTR 35.0%
! TGTTTGGTTCAAAAGCTGTT+TGG - chr3_1:89031321-89031340 Msa0385500:CDS 35.0%
GGCAGATTATCTTTACCATT+CGG - chr3_1:89031428-89031447 Msa0385500:intron 35.0%
TTTGGTGAGGTTTATGATTC+TGG - chr3_1:89031502-89031521 Msa0385500:intron 35.0%
!! TATGATTCTGGCTTCTGATT+TGG - chr3_1:89031514-89031533 Msa0385500:intron 35.0%
AAAAGTAGCTATAACGATCC+AGG + chr3_1:89031589-89031608 None:intergenic 35.0%
TCTCATAGTACCATAAGCAA+AGG + chr3_1:89031620-89031639 None:intergenic 35.0%
ACAAGAATTAAAGCCAGCAT+AGG + chr3_1:89031702-89031721 None:intergenic 35.0%
CTTCTTGTAGCTTCTGTTAA+TGG - chr3_1:89031823-89031842 Msa0385500:intron 35.0%
TATCAACGCTTAACCATCAA+TGG + chr3_1:89031870-89031889 None:intergenic 35.0%
TCTGTCAAGTGGTTAAACTT+TGG - chr3_1:89031948-89031967 Msa0385500:intron 35.0%
CTGTCAAGTGGTTAAACTTT+GGG - chr3_1:89031949-89031968 Msa0385500:intron 35.0%
GCTATTATCATCAAGCCATA+AGG + chr3_1:89032005-89032024 None:intergenic 35.0%
AGTAACTAACCAAAGCCATA+AGG + chr3_1:89032140-89032159 None:intergenic 35.0%
GCTTGAGATCAAATATTGGT+TGG - chr3_1:89032160-89032179 Msa0385500:intron 35.0%
TGCTTACATATCTACTTTGG+TGG - chr3_1:89032207-89032226 Msa0385500:intron 35.0%
TGAATAACCAGTCCAAAACA+GGG + chr3_1:89032302-89032321 None:intergenic 35.0%
ATGAATAACCAGTCCAAAAC+AGG + chr3_1:89032303-89032322 None:intergenic 35.0%
TATTGAGGTTATACATCTGC+TGG - chr3_1:89032364-89032383 Msa0385500:intron 35.0%
TGATTGGAAGTCTTCTCTTA+TGG - chr3_1:89032456-89032475 Msa0385500:CDS 35.0%
ACAAAGTTAACACCAAACAG+AGG + chr3_1:89032560-89032579 None:intergenic 35.0%
TTCTCTTACCTTGAGTTTGA+GGG - chr3_1:89032601-89032620 Msa0385500:CDS 35.0%
! GTTAGTGGATGCCTATAAAT+AGG - chr3_1:89032682-89032701 Msa0385500:intron 35.0%
GATGCCATGTTTACTAACAA+TGG - chr3_1:89032801-89032820 Msa0385500:intron 35.0%
TTTGATTCCATATAGTAGGG+GGG - chr3_1:89032842-89032861 Msa0385500:intron 35.0%
GTGAGGCTATAAGATTTACA+CGG + chr3_1:89032969-89032988 None:intergenic 35.0%
CAAAATTTCGAACTCAAGTG+AGG + chr3_1:89032986-89033005 None:intergenic 35.0%
! TAAAATAGTGGAATCAAGCG+AGG + chr3_1:89033089-89033108 None:intergenic 35.0%
TTAAAAGCTTATCCATGGAC+TGG - chr3_1:89033106-89033125 Msa0385500:intron 35.0%
GTTGACAATGAGAATGGTAA+TGG + chr3_1:89033152-89033171 None:intergenic 35.0%
CAGAGCAAATGTTATACAGA+AGG + chr3_1:89033206-89033225 None:intergenic 35.0%
ACATTTGCTCTGTTATCGAA+TGG - chr3_1:89033214-89033233 Msa0385500:intron 35.0%
TGTATGAGGATAGAATTGTC+AGG + chr3_1:89033664-89033683 None:intergenic 35.0%
! GTTTAGATGCTTTGTTAAGG+AGG + chr3_1:89033702-89033721 None:intergenic 35.0%
! GGAGTTTAGATGCTTTGTTA+AGG + chr3_1:89033705-89033724 None:intergenic 35.0%
AGGAGATGTTTGTGAAATGT+TGG + chr3_1:89033733-89033752 None:intergenic 35.0%
AACATTTCACAAACATCTCC+TGG - chr3_1:89033732-89033751 Msa0385500:intron 35.0%
TGAGTTCTACTTGCGAAAAT+GGG + chr3_1:89033794-89033813 None:intergenic 35.0%
TTGAGTTCTACTTGCGAAAA+TGG + chr3_1:89033795-89033814 None:intergenic 35.0%
TTGGGAAAGAGAGAAAATAG+GGG + chr3_1:89033864-89033883 None:intergenic 35.0%
GTTTGGGAAAGAGAGAAAAT+AGG + chr3_1:89033866-89033885 None:intergenic 35.0%
!! TGAATGGATTTTTAGGCATG+TGG - chr3_1:89034517-89034536 Msa0385500:intron 35.0%
! CTTAAAAGCACAGCTAAACA+TGG + chr3_1:89034658-89034677 None:intergenic 35.0%
!! GTGCTTTTAAGAGATTGTGA+CGG - chr3_1:89034667-89034686 Msa0385500:intron 35.0%
!! TGCTTTTAAGAGATTGTGAC+GGG - chr3_1:89034668-89034687 Msa0385500:intron 35.0%
TTATCCATGCTTATTGTGGT+TGG - chr3_1:89034724-89034743 Msa0385500:intron 35.0%
TATCCATGCTTATTGTGGTT+GGG - chr3_1:89034725-89034744 Msa0385500:intron 35.0%
TTCATGATATGCAGTCATTC+TGG - chr3_1:89035052-89035071 Msa0385500:intron 35.0%
! ATATGCAGTCATTCTGGAAA+GGG - chr3_1:89035058-89035077 Msa0385500:intron 35.0%
!! AATCTGAGACAGCATTTTCA+AGG + chr3_1:89035124-89035143 None:intergenic 35.0%
!! CATTTCTGGAGTTTAGTTGA+AGG + chr3_1:89035329-89035348 None:intergenic 35.0%
GTAAGAAAGCAACTCATTTC+TGG + chr3_1:89035343-89035362 None:intergenic 35.0%
! TGCTTAACGTGGTTTAAGAT+TGG - chr3_1:89035558-89035577 Msa0385500:intron 35.0%
! GCTTAACGTGGTTTAAGATT+GGG - chr3_1:89035559-89035578 Msa0385500:intron 35.0%
!!! AATAGTATTTTGGGGTCTTG+AGG - chr3_1:89035686-89035705 Msa0385500:intron 35.0%
TAGGATCTTAACGTTTGTGA+AGG - chr3_1:89035735-89035754 Msa0385500:intron 35.0%
AGGATCTTAACGTTTGTGAA+GGG - chr3_1:89035736-89035755 Msa0385500:intron 35.0%
TACATAATGAATGCTGTGTG+AGG + chr3_1:89035788-89035807 None:intergenic 35.0%
GATATGATATATGACTCCTG+TGG - chr3_1:89035879-89035898 Msa0385500:intron 35.0%
TGAATTCTTTCTTCAATCCC+TGG + chr3_1:89036032-89036051 None:intergenic 35.0%
! GATTCTGAAAGACCTTAAGA+AGG - chr3_1:89036062-89036081 Msa0385500:intron 35.0%
GTGTAGGTTATTCAACTTCA+AGG - chr3_1:89036204-89036223 Msa0385500:intron 35.0%
ATGTGAAGTCATTCATTACC+TGG + chr3_1:89036263-89036282 None:intergenic 35.0%
AAGGCATATGCTTAGCTTAT+TGG - chr3_1:89036492-89036511 Msa0385500:intron 35.0%
! TTTGTTAGCTTCTCAGCAAT+AGG - chr3_1:89036661-89036680 Msa0385500:intron 35.0%
!!! TGTGTTTTTTTCCTCCTGAT+TGG - chr3_1:89036735-89036754 Msa0385500:intron 35.0%
!!! GTGTTTTTTTCCTCCTGATT+GGG - chr3_1:89036736-89036755 Msa0385500:intron 35.0%
TATTCATGCCTTTCATTGCA+TGG - chr3_1:89037096-89037115 Msa0385500:intron 35.0%
! TCAGTTTTCCATGCAATGAA+AGG + chr3_1:89037107-89037126 None:intergenic 35.0%
TTCAAATTCACAAGTGCAGA+GGG + chr3_1:89037188-89037207 None:intergenic 35.0%
TGTGATTGTGGAATTTCTTG+TGG - chr3_1:89037317-89037336 Msa0385500:intron 35.0%
ACAGTTGTGATGCAGTATTA+TGG - chr3_1:89037356-89037375 Msa0385500:intron 35.0%
TTCAAGATTTCAGATGCCTT+TGG - chr3_1:89037516-89037535 Msa0385500:intron 35.0%
!! GGTTTTATGACCTAAAACAC+TGG - chr3_1:89037574-89037593 Msa0385500:CDS 35.0%
! TGTTTGTTGAAAGTCCTCAC+CGG - chr3_1:89030963-89030982 Msa0385500:three_prime_UTR 40.0%
! TGTTTGGTTCAGAAGCTGTT+TGG - chr3_1:89031205-89031224 Msa0385500:three_prime_UTR 40.0%
TGGTTCAGAAGCTGTTTGTT+TGG - chr3_1:89031225-89031244 Msa0385500:three_prime_UTR 40.0%
! TGTTTGGTTCAGAAGCTGTT+TGG - chr3_1:89031205-89031224 Msa0385500:three_prime_UTR 40.0%
! TGTTTGGTTCAGAAGCTGTT+TGG - chr3_1:89031205-89031224 Msa0385500:three_prime_UTR 40.0%
! TGTTTGGTTCAGAAGCTGTT+TGG - chr3_1:89031205-89031224 Msa0385500:three_prime_UTR 40.0%
! GTTTGGTTCAGAAGCTACTT+TGG - chr3_1:89031338-89031357 Msa0385500:intron 40.0%
CTTCCTTTATGAGCTCTACA+TGG - chr3_1:89031455-89031474 Msa0385500:intron 40.0%
TACCTCTTTCTATTTGGTCC+TGG - chr3_1:89031568-89031587 Msa0385500:intron 40.0%
ATCCAGGACCAAATAGAAAG+AGG + chr3_1:89031573-89031592 None:intergenic 40.0%
!!! ATTCTGTTTTGATGGGATGC+AGG - chr3_1:89031651-89031670 Msa0385500:intron 40.0%
!!! TTCTGTTTTGATGGGATGCA+GGG - chr3_1:89031652-89031671 Msa0385500:intron 40.0%
!! GTCTTGTTATTCTCCTATGC+TGG - chr3_1:89031686-89031705 Msa0385500:intron 40.0%
GTTTGTGCTTCTGTTCATGA+TGG - chr3_1:89031720-89031739 Msa0385500:intron 40.0%
TGATATGCTTCCGTCATGAA+TGG - chr3_1:89031754-89031773 Msa0385500:intron 40.0%
CAACGCTTAACCATTCATGA+CGG + chr3_1:89031767-89031786 None:intergenic 40.0%
AGTGACACTTCTTCCATTGA+TGG - chr3_1:89031854-89031873 Msa0385500:intron 40.0%
TGATTGCTTCTGCCTTTGAT+AGG - chr3_1:89031903-89031922 Msa0385500:intron 40.0%
CAAGCTTAACCACCTATCAA+AGG + chr3_1:89031918-89031937 None:intergenic 40.0%
CTTTGGGTATAGTTTCTGCT+TGG - chr3_1:89031965-89031984 Msa0385500:intron 40.0%
! GTGGTTAAGCTTTTGCCTTA+TGG - chr3_1:89031987-89032006 Msa0385500:intron 40.0%
TGATAATAGCTTCTGCCCTA+TGG - chr3_1:89032015-89032034 Msa0385500:intron 40.0%
CAACATGCTTAACCACCATA+GGG + chr3_1:89032033-89032052 None:intergenic 40.0%
TTAAGCATGTTGCCCTTTGT+TGG - chr3_1:89032041-89032060 Msa0385500:intron 40.0%
CCATCAACAAAGCCAACAAA+GGG + chr3_1:89032056-89032075 None:intergenic 40.0%
ACCATCAACAAAGCCAACAA+AGG + chr3_1:89032057-89032076 None:intergenic 40.0%
TGATGGTAGCTTCTGTTAAG+TGG - chr3_1:89032070-89032089 Msa0385500:intron 40.0%
AGTGGTTAAGCCTAGAGTTA+TGG - chr3_1:89032088-89032107 Msa0385500:intron 40.0%
! TGGTTAAGCGTTTTGCCTTA+TGG - chr3_1:89032122-89032141 Msa0385500:intron 40.0%
!! TGGTTGGATTTGGTTTGGTT+TGG - chr3_1:89032176-89032195 Msa0385500:intron 40.0%
! GACTGGTTATTCATACTTGC+TGG - chr3_1:89032309-89032328 Msa0385500:CDS 40.0%
! CATCTGCTGGAAAGTTGTTT+TGG - chr3_1:89032377-89032396 Msa0385500:intron 40.0%
! TTGCAAGATGTTTCTGTTGG+AGG - chr3_1:89032421-89032440 Msa0385500:intron 40.0%
TTTCTGTTGGAGGAAACAAG+TGG - chr3_1:89032431-89032450 Msa0385500:CDS 40.0%
GAGGAAACAAGTGGTTTGAT+TGG - chr3_1:89032440-89032459 Msa0385500:CDS 40.0%
! GAGAACTCTTAGCTTGAGTT+TGG + chr3_1:89032586-89032605 None:intergenic 40.0%
GTTCTCTTACCTTGAGTTTG+AGG - chr3_1:89032600-89032619 Msa0385500:CDS 40.0%
GTTAGTTAGAGCTAGTGATG+AGG - chr3_1:89032645-89032664 Msa0385500:intron 40.0%
GTTAGTAAACATGGCATCCA+TGG + chr3_1:89032799-89032818 None:intergenic 40.0%
GCGACCATTGTTAGTAAACA+TGG + chr3_1:89032808-89032827 None:intergenic 40.0%
TTGATTCCATATAGTAGGGG+GGG - chr3_1:89032843-89032862 Msa0385500:intron 40.0%
GAGCTTTGCCAAATTTAGAG+TGG + chr3_1:89033579-89033598 None:intergenic 40.0%
AGTAGAAACGTAGAGAAGCT+TGG + chr3_1:89033622-89033641 None:intergenic 40.0%
! AGATGCTTTGTTAAGGAGGT+GGG + chr3_1:89033698-89033717 None:intergenic 40.0%
! TAGATGCTTTGTTAAGGAGG+TGG + chr3_1:89033699-89033718 None:intergenic 40.0%
TCGTTGAGATTGCGTTGTTT+GGG + chr3_1:89033882-89033901 None:intergenic 40.0%
GATAAGGAACGATCTTCTCT+CGG + chr3_1:89033905-89033924 None:intergenic 40.0%
ATAGGTTTGAGCTATCTGGT+TGG - chr3_1:89034901-89034920 Msa0385500:intron 40.0%
ATAGAGTTCCAACTTACCGT+AGG + chr3_1:89034988-89035007 None:intergenic 40.0%
! GATATGCAGTCATTCTGGAA+AGG - chr3_1:89035057-89035076 Msa0385500:intron 40.0%
!! TTGGGTTTTATCGTGTGTGA+AGG - chr3_1:89035599-89035618 Msa0385500:intron 40.0%
TTCGCTGCTGTATACGAATA+TGG + chr3_1:89035984-89036003 None:intergenic 40.0%
ATTCGTATACAGCAGCGAAA+TGG - chr3_1:89035985-89036004 Msa0385500:intron 40.0%
AAAAAGCTTGACAACTGTCC+AGG - chr3_1:89036011-89036030 Msa0385500:intron 40.0%
AAAAGCTTGACAACTGTCCA+GGG - chr3_1:89036012-89036031 Msa0385500:intron 40.0%
TTGTAATGGTACAGTTGTCC+AGG - chr3_1:89036092-89036111 Msa0385500:intron 40.0%
!! TGTGTCTACCTTTTTAGTCC+AGG - chr3_1:89036242-89036261 Msa0385500:intron 40.0%
TACTTAACCAGGGAAACAGA+TGG + chr3_1:89036344-89036363 None:intergenic 40.0%
! TGTCTGAGATCAAGTTTCTC+TGG - chr3_1:89036425-89036444 Msa0385500:intron 40.0%
AGGAGGAAAAAAACACACTG+AGG + chr3_1:89036732-89036751 None:intergenic 40.0%
GTACAAGATCATTCCCAATC+AGG + chr3_1:89036752-89036771 None:intergenic 40.0%
ACTTATAGAGTTGCCTTTCC+CGG - chr3_1:89036859-89036878 Msa0385500:intron 40.0%
GGATGTATGCCTCTATAGAA+CGG - chr3_1:89036923-89036942 Msa0385500:intron 40.0%
GTTCAAATTCACAAGTGCAG+AGG + chr3_1:89037189-89037208 None:intergenic 40.0%
CTGCACTTGTGAATTTGAAC+AGG - chr3_1:89037189-89037208 Msa0385500:intron 40.0%
ACTTGTGAATTTGAACAGGC+TGG - chr3_1:89037193-89037212 Msa0385500:intron 40.0%
TTGTGGAATTTCTTGTGGTC+TGG - chr3_1:89037322-89037341 Msa0385500:intron 40.0%
! GGCATCTGAAATCTTGAATC+TGG + chr3_1:89037514-89037533 None:intergenic 40.0%
! CAAAACTTGTTCCAAGCCAA+AGG + chr3_1:89037535-89037554 None:intergenic 40.0%
GAGCTTCCTGTACACTATTC+CGG + chr3_1:89030985-89031004 None:intergenic 45.0%
TCTGCTGTTCAGAAGCTGTT+TGG - chr3_1:89031157-89031176 Msa0385500:three_prime_UTR 45.0%
GGTTACCTAATGCTTGCTTC+TGG - chr3_1:89031359-89031378 Msa0385500:intron 45.0%
GAAAGCCAGAAGCAAGCATT+AGG + chr3_1:89031367-89031386 None:intergenic 45.0%
CATAAAGGAAGAGAGCCGAA+TGG + chr3_1:89031446-89031465 None:intergenic 45.0%
GTGCCATGTAGAGCTCATAA+AGG + chr3_1:89031461-89031480 None:intergenic 45.0%
CTCACCAAATACCACACCAA+GGG + chr3_1:89031491-89031510 None:intergenic 45.0%
TTGTCCTCAGCCTTTGCTTA+TGG - chr3_1:89031607-89031626 Msa0385500:intron 45.0%
AGTACCATAAGCAAAGGCTG+AGG + chr3_1:89031614-89031633 None:intergenic 45.0%
AAACGACGCTTAACCATCCT+TGG + chr3_1:89031799-89031818 None:intergenic 45.0%
TTGCTTCTGCCTTTGATAGG+TGG - chr3_1:89031906-89031925 Msa0385500:intron 45.0%
GTTGTTGTGCTTCTGTCAAG+TGG - chr3_1:89031937-89031956 Msa0385500:intron 45.0%
TGGGTATAGTTTCTGCTTGG+TGG - chr3_1:89031968-89031987 Msa0385500:intron 45.0%
TAATAGCTTCTGCCCTATGG+TGG - chr3_1:89032018-89032037 Msa0385500:intron 45.0%
GCAACATGCTTAACCACCAT+AGG + chr3_1:89032034-89032053 None:intergenic 45.0%
!! CCCTTTGTTGGCTTTGTTGA+TGG - chr3_1:89032053-89032072 Msa0385500:intron 45.0%
AACGCTTAACCATTGAGCAG+AGG + chr3_1:89032114-89032133 None:intergenic 45.0%
! AGCGTTTTGCCTTATGGCTT+TGG - chr3_1:89032128-89032147 Msa0385500:intron 45.0%
! GTTTTCCTTGCCAACACCTT+TGG - chr3_1:89032271-89032290 Msa0385500:intron 45.0%
ATAACCAGTCCAAAACAGGG+AGG + chr3_1:89032299-89032318 None:intergenic 45.0%
TCTTACCTTGAGTTTGAGGG+AGG - chr3_1:89032604-89032623 Msa0385500:CDS 45.0%
AATAGCCTCCCTCAAACTCA+AGG + chr3_1:89032612-89032631 None:intergenic 45.0%
! GCTTTTCTCTCTTCCTTCCA+TGG - chr3_1:89032779-89032798 Msa0385500:intron 45.0%
GTAAACATGGCATCCATGGA+AGG + chr3_1:89032795-89032814 None:intergenic 45.0%
! GTGTTAATTGTGGTGGGACT+TGG - chr3_1:89033034-89033053 Msa0385500:intron 45.0%
ATAAGTGCTCTACCAGTCCA+TGG + chr3_1:89033121-89033140 None:intergenic 45.0%
! GGGAGTGAGGTTTTTGTATG+AGG + chr3_1:89033678-89033697 None:intergenic 45.0%
CTACTTGCGAAAATGGGTGA+GGG + chr3_1:89033788-89033807 None:intergenic 45.0%
TCTACTTGCGAAAATGGGTG+AGG + chr3_1:89033789-89033808 None:intergenic 45.0%
GTCGTTGAGATTGCGTTGTT+TGG + chr3_1:89033883-89033902 None:intergenic 45.0%
ACGCATCGAAACCCTAATCT+AGG - chr3_1:89033967-89033986 Msa0385500:intron 45.0%
! CGAAACCCTAATCTAGGATC+AGG - chr3_1:89033973-89033992 Msa0385500:intron 45.0%
TTGCCCAACCACAATAAGCA+TGG + chr3_1:89034731-89034750 None:intergenic 45.0%
ACATTCCCCACCATGCTTAT+CGG - chr3_1:89034760-89034779 Msa0385500:intron 45.0%
GTTTGAGCTATCTGGTTGGT+GGG - chr3_1:89034905-89034924 Msa0385500:intron 45.0%
! TTTGAGCTATCTGGTTGGTG+GGG - chr3_1:89034906-89034925 Msa0385500:intron 45.0%
!! GTTGGTGGGGCATTCTATTT+TGG - chr3_1:89034919-89034938 Msa0385500:intron 45.0%
GCACAAATTCCTACTGCCTA+CGG - chr3_1:89034969-89034988 Msa0385500:intron 45.0%
GACAGACAACACGCATCAAT+AGG + chr3_1:89035017-89035036 None:intergenic 45.0%
!!! TTTTTCTGGGGTGCTTAACG+TGG - chr3_1:89035547-89035566 Msa0385500:intron 45.0%
!!! AGTATTTTGGGGTCTTGAGG+TGG - chr3_1:89035689-89035708 Msa0385500:intron 45.0%
TCAGCATTTGCCTCAGCAAA+AGG + chr3_1:89035928-89035947 None:intergenic 45.0%
! TTTTGCTGAGGCAAATGCTG+AGG - chr3_1:89035927-89035946 Msa0385500:intron 45.0%
TTCAACTTCAAGGCGATCAG+AGG - chr3_1:89036214-89036233 Msa0385500:intron 45.0%
GTGGCGTAATTTGATCTGAG+TGG - chr3_1:89036401-89036420 Msa0385500:intron 45.0%
CAAGATCATTCCCAATCAGG+AGG + chr3_1:89036749-89036768 None:intergenic 45.0%
ATAAGTGCCAACCTGCTCAA+AGG + chr3_1:89036845-89036864 None:intergenic 45.0%
CTTATAGAGTTGCCTTTCCC+GGG - chr3_1:89036860-89036879 Msa0385500:intron 45.0%
AAGACTGTTTACCCAAGTCC+CGG + chr3_1:89036881-89036900 None:intergenic 45.0%
TTCACAAGTGCAGAGGGATA+AGG + chr3_1:89037182-89037201 None:intergenic 45.0%
ATTCATGGTTTCTGAGCAGC+TGG - chr3_1:89037241-89037260 Msa0385500:intron 45.0%
! TATCTGGCTCATTTCGAGCT+GGG - chr3_1:89037286-89037305 Msa0385500:intron 45.0%
GATTTCAGATGCCTTTGGCT+TGG - chr3_1:89037521-89037540 Msa0385500:intron 45.0%
!!! AAAATTTTGAATTATAAAAT+GGG + chr3_1:89032929-89032948 None:intergenic 5.0%
!! TTATAAGTAAAAAAAAAATA+GGG + chr3_1:89035403-89035422 None:intergenic 5.0%
TCCTCACCGGAATAGTGTAC+AGG - chr3_1:89030976-89030995 Msa0385500:three_prime_UTR 50.0%
TCCTGTACACTATTCCGGTG+AGG + chr3_1:89030980-89030999 None:intergenic 50.0%
TAGTGTACAGGAAGCTCCCA+AGG - chr3_1:89030988-89031007 Msa0385500:three_prime_UTR 50.0%
ACATGGCACTTTCATGCCCT+TGG - chr3_1:89031472-89031491 Msa0385500:intron 50.0%
! CATGCCCTTGGTGTGGTATT+TGG - chr3_1:89031484-89031503 Msa0385500:intron 50.0%
CCTCACCAAATACCACACCA+AGG + chr3_1:89031492-89031511 None:intergenic 50.0%
! CCTTGGTGTGGTATTTGGTG+AGG - chr3_1:89031489-89031508 Msa0385500:intron 50.0%
! AAGCGTTGTGCTTCTGTCCA+AGG - chr3_1:89031779-89031798 Msa0385500:intron 50.0%
GTTGTGCTTCTGTCCAAGGA+TGG - chr3_1:89031783-89031802 Msa0385500:intron 50.0%
TGAGCAGAGGCCATAACTCT+AGG + chr3_1:89032101-89032120 None:intergenic 50.0%
GAGTTATGGCCTCTGCTCAA+TGG - chr3_1:89032102-89032121 Msa0385500:intron 50.0%
! GGTGGTTCTGCTAGTGATGT+TGG - chr3_1:89032225-89032244 Msa0385500:intron 50.0%
!! AGGTACCAAAGGTGTTGGCA+AGG + chr3_1:89032279-89032298 None:intergenic 50.0%
!! CCAAAACAGGGAGGTACCAA+AGG + chr3_1:89032290-89032309 None:intergenic 50.0%
! CCTTTGGTACCTCCCTGTTT+TGG - chr3_1:89032287-89032306 Msa0385500:intron 50.0%
ACACATCCCCCCCTACTATA+TGG + chr3_1:89032852-89032871 None:intergenic 50.0%
ATAGTAGGGGGGGATGTGTT+TGG - chr3_1:89032853-89032872 Msa0385500:intron 50.0%
TAGTAGGGGGGGATGTGTTT+GGG - chr3_1:89032854-89032873 Msa0385500:intron 50.0%
TTGTTAAGGAGGTGGGAGTG+AGG + chr3_1:89033691-89033710 None:intergenic 50.0%
GTTTGTGAAATGTTGGCGCG+TGG + chr3_1:89033726-89033745 None:intergenic 50.0%
!! TTAAGAGATTGTGACGGGCG+TGG - chr3_1:89034673-89034692 Msa0385500:intron 50.0%
CATTCCCCACCATGCTTATC+GGG - chr3_1:89034761-89034780 Msa0385500:intron 50.0%
ATTCCCCACCATGCTTATCG+GGG - chr3_1:89034762-89034781 Msa0385500:intron 50.0%
GGTTTGAGCTATCTGGTTGG+TGG - chr3_1:89034904-89034923 Msa0385500:intron 50.0%
TCCTACTGCCTACGGTAAGT+TGG - chr3_1:89034977-89034996 Msa0385500:intron 50.0%
TCCAACTTACCGTAGGCAGT+AGG + chr3_1:89034981-89035000 None:intergenic 50.0%
TATGACTCCTGTGGGATGTG+TGG - chr3_1:89035888-89035907 Msa0385500:intron 50.0%
ATTGTTGCCACACATCCCAC+AGG + chr3_1:89035898-89035917 None:intergenic 50.0%
GACATACCTGTCCTTGCTCT+GGG + chr3_1:89036119-89036138 None:intergenic 50.0%
AGACATACCTGTCCTTGCTC+TGG + chr3_1:89036120-89036139 None:intergenic 50.0%
CAGGGAAACAGATGGATCTC+AGG + chr3_1:89036336-89036355 None:intergenic 50.0%
CTGAGATCCATCTGTTTCCC+TGG - chr3_1:89036334-89036353 Msa0385500:intron 50.0%
AGACTGTTTACCCAAGTCCC+GGG + chr3_1:89036880-89036899 None:intergenic 50.0%
ACAGGCTGGAATCGTGAAGA+AGG - chr3_1:89037207-89037226 Msa0385500:intron 50.0%
! GTATCTGGCTCATTTCGAGC+TGG - chr3_1:89037285-89037304 Msa0385500:intron 50.0%
GCACTTTCATGCCCTTGGTG+TGG - chr3_1:89031477-89031496 Msa0385500:intron 55.0%
!! CAGGGAGGTACCAAAGGTGT+TGG + chr3_1:89032284-89032303 None:intergenic 55.0%
!! GGTACCTCCCTGTTTTGGAC+TGG - chr3_1:89032292-89032311 Msa0385500:CDS 55.0%
AGTAGGGGGGGATGTGTTTG+GGG - chr3_1:89032855-89032874 Msa0385500:intron 55.0%
! GGATGTGTTTGGGGCATCAC+TGG - chr3_1:89032864-89032883 Msa0385500:intron 55.0%
TTCCCCACCATGCTTATCGG+GGG - chr3_1:89034763-89034782 Msa0385500:intron 55.0%
CTATCAGCCCCCGATAAGCA+TGG + chr3_1:89034773-89034792 None:intergenic 55.0%
! CTCCTTTGATGACCCAGCAC+CGG + chr3_1:89035956-89035975 None:intergenic 55.0%
TTCGCACCAGTCCTTTGAGC+AGG - chr3_1:89036831-89036850 Msa0385500:intron 55.0%
CACCAGTCCTTTGAGCAGGT+TGG - chr3_1:89036835-89036854 Msa0385500:intron 55.0%
TGCCAACCTGCTCAAAGGAC+TGG + chr3_1:89036840-89036859 None:intergenic 55.0%
AGTTGCCTTTCCCGGGACTT+GGG - chr3_1:89036867-89036886 Msa0385500:intron 55.0%
GTTTACCCAAGTCCCGGGAA+AGG + chr3_1:89036875-89036894 None:intergenic 55.0%
ACGCGCTGGGTGTAGTAGGT+GGG + chr3_1:89033760-89033779 None:intergenic 60.0%
GTTCACGCGCTGGGTGTAGT+AGG + chr3_1:89033764-89033783 None:intergenic 60.0%
AGCCCCCGATAAGCATGGTG+GGG + chr3_1:89034768-89034787 None:intergenic 60.0%
CAGCCCCCGATAAGCATGGT+GGG + chr3_1:89034769-89034788 None:intergenic 60.0%
TCAGCCCCCGATAAGCATGG+TGG + chr3_1:89034770-89034789 None:intergenic 60.0%
GAGGCAAATGCTGAGGACGC+CGG - chr3_1:89035934-89035953 Msa0385500:intron 60.0%
GTTGTCCAGGACCCAGAGCA+AGG - chr3_1:89036105-89036124 Msa0385500:intron 60.0%
GAGTTGCCTTTCCCGGGACT+TGG - chr3_1:89036866-89036885 Msa0385500:intron 60.0%
GGGTGTAGTAGGTGGGGTCC+AGG + chr3_1:89033753-89033772 None:intergenic 65.0%
CGCGCTGGGTGTAGTAGGTG+GGG + chr3_1:89033759-89033778 None:intergenic 65.0%
CACGCGCTGGGTGTAGTAGG+TGG + chr3_1:89033761-89033780 None:intergenic 65.0%
!! GGTGAGGGTGTTCACGCGCT+GGG + chr3_1:89033773-89033792 None:intergenic 65.0%
AATGCTGAGGACGCCGGTGC+TGG - chr3_1:89035940-89035959 Msa0385500:intron 65.0%
ATGCTGAGGACGCCGGTGCT+GGG - chr3_1:89035941-89035960 Msa0385500:intron 65.0%
! CGCCGGTGCTGGGTCATCAA+AGG - chr3_1:89035951-89035970 Msa0385500:intron 65.0%
! CCTGTCCTTGCTCTGGGTCC+TGG + chr3_1:89036113-89036132 None:intergenic 65.0%
CCAGGACCCAGAGCAAGGAC+AGG - chr3_1:89036110-89036129 Msa0385500:intron 65.0%
!! GGGTGAGGGTGTTCACGCGC+TGG + chr3_1:89033774-89033793 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 89030951 89037603 89030951 ID=Msa0385500;Name=Msa0385500
chr3_1 mRNA 89030951 89037603 89030951 ID=Msa0385500-mRNA-1;Parent=Msa0385500;Name=Msa0385500-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.8|0.8|0.25|0.6|5|348|150
chr3_1 exon 89030951 89031343 89030951 ID=Msa0385500-mRNA-1:exon:24192;Parent=Msa0385500-mRNA-1
chr3_1 exon 89032291 89032344 89032291 ID=Msa0385500-mRNA-1:exon:24191;Parent=Msa0385500-mRNA-1
chr3_1 exon 89032423 89032631 89032423 ID=Msa0385500-mRNA-1:exon:24190;Parent=Msa0385500-mRNA-1
chr3_1 exon 89033564 89033649 89033564 ID=Msa0385500-mRNA-1:exon:24189;Parent=Msa0385500-mRNA-1
chr3_1 exon 89037545 89037603 89037545 ID=Msa0385500-mRNA-1:exon:24188;Parent=Msa0385500-mRNA-1
chr3_1 CDS 89037545 89037603 89037545 ID=Msa0385500-mRNA-1:cds;Parent=Msa0385500-mRNA-1
chr3_1 CDS 89033564 89033649 89033564 ID=Msa0385500-mRNA-1:cds;Parent=Msa0385500-mRNA-1
chr3_1 CDS 89032423 89032631 89032423 ID=Msa0385500-mRNA-1:cds;Parent=Msa0385500-mRNA-1
chr3_1 CDS 89032291 89032344 89032291 ID=Msa0385500-mRNA-1:cds;Parent=Msa0385500-mRNA-1
chr3_1 CDS 89031299 89031343 89031299 ID=Msa0385500-mRNA-1:cds;Parent=Msa0385500-mRNA-1
chr3_1 three_prime_UTR 89030951 89031298 89030951 ID=Msa0385500-mRNA-1:three_prime_utr;Parent=Msa0385500-mRNA-1
Gene Sequence

>Msa0385500

ATGATCTCAAGGTGTTTGTTGAAAGTCCTCACCGGAATAGTGTACAGGAAGCTCCCAAGGTTTGAGCTATCTGGTTGGTGGGGCATTCTATTTTGGAGATTAAGTTTCATGTCTGAATTAGACGCACAAATTCCTACTGCCTACGATCCTTTTGCTGAGGCAAATGCTGAGGACGCCGGTGCTGGGTCATCAAAGGAGTACGTCCATATTCGTATACAGCAGCGAAATGGTAGAAAAAGCTTGACAACTGTCCAGGGATTGAAGAAAGAATTCAGTTACAACAAGATTCTGAAAGACCTTAAGAAGGAGTTTTGTTGTAATGGTACAGTTGTCCAGGACCCAGAGCAAGGACAGGTTATTCAACTTCAAGGCGATCAGAGGAAAAATGTGTCTACCTTTTTAGTCCAGGCTGGAATCGTGAAGAAGGAGCATATTAAAATTCATGGTTTCTGA

Protein sequence

>Msa0385500

MISRCLLKVLTGIVYRKLPRFELSGWWGILFWRLSFMSELDAQIPTAYDPFAEANAEDAGAGSSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEQGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF*