AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693210 MtrunA17_Chr4g0043521 100.000 220 0 0 1 220 1 220 3.46e-166 456
Msa0693210 MtrunA17_Chr2g0291651 90.256 195 19 0 3 197 5 199 1.15e-137 384
Msa0693210 MtrunA17_Chr1g0169861 75.355 211 52 0 5 215 53 263 1.02e-125 356
Msa0693210 MtrunA17_Chr4g0010271 79.275 193 40 0 5 197 3 195 8.40e-121 342
Msa0693210 MtrunA17_Chr7g0237561 78.756 193 41 0 5 197 3 195 1.07e-117 334
Msa0693210 MtrunA17_Chr2g0296021 66.509 212 71 0 4 215 2 213 4.83e-110 315
Msa0693210 MtrunA17_Chr7g0237521 68.394 193 61 0 5 197 3 195 1.87e-101 292
Msa0693210 MtrunA17_Chr1g0210521 55.603 232 82 3 4 216 2 231 8.99e-96 279
Msa0693210 MtrunA17_Chr1g0169851 65.753 146 35 1 59 189 8 153 1.38e-65 199
Msa0693210 MtrunA17_Chr4g0010211 79.439 107 22 0 66 172 3 109 2.33e-59 182
Msa0693210 MtrunA17_Chr4g0026121 34.375 192 121 4 7 196 2 190 3.41e-43 144
Msa0693210 MtrunA17_Chr5g0441741 37.895 190 115 3 8 196 3 190 3.98e-43 144
Msa0693210 MtrunA17_Chr4g0064371 29.907 214 142 4 8 216 3 213 4.61e-36 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693210 AT1G04760.2 79.798 198 40 0 5 202 3 200 6.96e-123 347
Msa0693210 AT1G04760.1 79.798 198 40 0 5 202 3 200 6.96e-123 347
Msa0693210 AT2G32670.1 81.347 193 36 0 5 197 68 260 1.12e-120 344
Msa0693210 AT2G33120.1 80.829 193 37 0 5 197 3 195 1.60e-120 341
Msa0693210 AT1G04750.1 80.311 193 38 0 5 197 3 195 1.76e-120 341
Msa0693210 AT2G33120.2 77.114 201 38 1 5 197 3 203 5.40e-117 333
Msa0693210 AT3G54300.3 57.018 228 77 2 4 211 2 228 8.12e-96 280
Msa0693210 AT3G54300.2 57.018 228 77 2 4 211 2 228 8.12e-96 280
Msa0693210 AT3G54300.1 57.018 228 77 2 4 211 2 228 8.12e-96 280
Msa0693210 AT2G33110.1 63.731 193 66 1 5 197 3 191 2.25e-88 260
Msa0693210 AT4G15780.1 65.730 178 60 1 5 181 3 180 3.28e-88 258
Msa0693210 AT2G33110.2 58.500 200 69 1 5 204 3 188 2.46e-82 243
Msa0693210 AT1G04750.2 83.761 117 19 0 81 197 1 117 1.18e-69 209
Msa0693210 AT1G04750.4 83.761 117 19 0 81 197 1 117 1.18e-69 209
Msa0693210 AT1G04750.3 83.761 117 19 0 81 197 1 117 1.18e-69 209
Msa0693210 AT5G11150.1 39.623 212 123 4 7 216 2 210 1.57e-49 161
Msa0693210 AT5G11150.2 39.623 212 123 4 7 216 2 210 2.78e-49 160
Msa0693210 AT5G22360.1 35.714 210 128 5 7 213 2 207 6.78e-46 152
Msa0693210 AT4G32150.1 39.474 190 112 3 7 195 2 189 9.16e-45 149
Msa0693210 AT2G25340.1 35.789 190 119 3 7 195 2 189 2.13e-38 132
Msa0693210 AT2G33120.3 80.000 70 14 0 128 197 44 113 1.70e-32 115
Msa0693210 AT3G24890.2 57.447 94 34 2 115 202 14 107 2.24e-26 99.0
Msa0693210 AT3G24890.1 60.000 55 22 0 112 166 11 65 1.71e-15 69.3
Msa0693210 AT3G24890.4 60.000 55 22 0 112 166 11 65 1.71e-15 69.3
Msa0693210 AT3G24890.3 60.000 55 22 0 112 166 11 65 1.71e-15 69.3
Msa0693210 AT3G24890.5 60.000 55 22 0 112 166 11 65 1.71e-15 69.3

Find 73 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATATGTTCCTTCAATTT+TGG 0.127814 4_4:+62101335 None:intergenic
AACAGCTTGAATAAGGAATT+TGG 0.135464 4_4:-62101460 Msa0693210:CDS
AATTACAAAGCCCTCTATTA+AGG 0.305205 4_4:+62102268 None:intergenic
TTCAATTACCTCGTCGATAA+TGG 0.314519 4_4:-62101884 Msa0693210:CDS
TGCACCTAACAGCTTGAATA+AGG 0.338054 4_4:-62101467 Msa0693210:CDS
GTGAATTTGTTGTTAGAAGC+TGG 0.366183 4_4:+62101929 None:intergenic
TGAGGCAGGCACAAGACTTC+AGG 0.377030 4_4:-62096510 Msa0693210:intron
ACAGCTTGAATAAGGAATTT+GGG 0.392757 4_4:-62101459 Msa0693210:intron
GCAAGCTTACTCACCTCCTC+CGG 0.394354 4_4:+62101296 None:intergenic
ATTGCATGAATAATGATAAC+AGG 0.397588 4_4:+62096120 None:intergenic
TTAGGTGTGTTTATAAAGTA+AGG 0.398032 4_4:+62102241 None:intergenic
ACCTTGTGATTCCTTAATAG+AGG 0.402462 4_4:-62102279 None:intergenic
GTTGAAGTTTCCGCTGAATT+CGG 0.415620 4_4:+62101982 None:intergenic
AATTCCTTATTCAAGCTGTT+AGG 0.425518 4_4:+62101463 None:intergenic
CTTAAAAGTGAACGGTATAC+AGG 0.429263 4_4:+62096242 None:intergenic
GTTTCTTGTGGTTGTGGTGA+TGG 0.431967 4_4:+62102106 None:intergenic
TGAGAATAAAGAAAGTGTTT+AGG 0.436696 4_4:+62102223 None:intergenic
GAAGATAAAGCTGATTGTAT+TGG 0.457650 4_4:-62096443 Msa0693210:CDS
TATTTATTCTTAAGAACGAT+TGG 0.463535 4_4:+62096385 None:intergenic
TTGTGGCAGGCCAAAATTGA+AGG 0.466510 4_4:-62101345 Msa0693210:intron
TGATGATGAGGAAAGATATC+AGG 0.485489 4_4:-62096303 Msa0693210:three_prime_UTR
ATTTATTCTTAAGAACGATT+GGG 0.491549 4_4:+62096386 None:intergenic
GAAGAGGTTTCTTGTGGTTG+TGG 0.491759 4_4:+62102100 None:intergenic
ACTTGATGTAGGTCCTGGAC+AGG 0.498294 4_4:-62096830 Msa0693210:intron
AATTACTAACCTGGTGATGA+AGG 0.503755 4_4:+62096769 None:intergenic
CATGATGGAGAATATTGAAA+AGG 0.507884 4_4:-62101237 Msa0693210:intron
TAGATCTGTGGAGAAGAAGA+TGG 0.511301 4_4:-62102071 Msa0693210:exon
TTGTGTTGTTGCGGATGAAA+CGG 0.512801 4_4:-62101575 Msa0693210:CDS
CCTTGTGATTCCTTAATAGA+GGG 0.520480 4_4:-62102278 None:intergenic
GCACAAGACTTCAGGAACTC+AGG 0.526353 4_4:-62096502 Msa0693210:CDS
CTTGATGTAGGTCCTGGACA+GGG 0.526403 4_4:-62096829 Msa0693210:intron
CGATTGGGAGGACAATTATG+AGG 0.534617 4_4:+62096401 None:intergenic
GAAATCAAACTACAATAGAC+AGG 0.545244 4_4:+62096165 None:intergenic
GCTTGCTAAGGTGAAGGCTC+AGG 0.546240 4_4:-62101279 Msa0693210:CDS
CAAGCTTACTCACCTCCTCC+GGG 0.549863 4_4:+62101297 None:intergenic
GAATAAATAAACGCCACTCT+CGG 0.554345 4_4:-62096371 Msa0693210:exon
AACGGTTGGAAGACAAGTGC+CGG 0.560243 4_4:-62101557 Msa0693210:CDS
TTTGTTGCGAAATATGGTGG+TGG 0.569761 4_4:-62101505 Msa0693210:CDS
CTGAAGGCATTGAAAAGCGA+TGG 0.572755 4_4:+62101958 None:intergenic
ATTATCGACGAGGTAATTGA+AGG 0.574959 4_4:+62101886 None:intergenic
AAATTCACTTACAATTGTGA+TGG 0.582315 4_4:-62101914 Msa0693210:CDS
TGATGTAGGTCCTGGACAGG+GGG 0.582640 4_4:-62096827 Msa0693210:intron
TTGTGTTGATCACCCGGAGG+AGG 0.583937 4_4:-62101309 Msa0693210:CDS
AGATCTGTGGAGAAGAAGAT+GGG 0.585955 4_4:-62102070 Msa0693210:exon
CACAAGACTTCAGGAACTCA+GGG 0.588787 4_4:-62096501 Msa0693210:CDS
GCAGTATTGTGTTGATCACC+CGG 0.590880 4_4:-62101315 Msa0693210:CDS
TAGAAGCTGGAAGCTTCTGA+AGG 0.592334 4_4:+62101942 None:intergenic
AAGATAAATGTCTCCGAGAG+TGG 0.592683 4_4:+62096358 None:intergenic
GACTGAGAACCTTCATCACC+AGG 0.596496 4_4:-62096778 Msa0693210:intron
GAGTAAGCTTGCTAAGGTGA+AGG 0.597551 4_4:-62101285 Msa0693210:CDS
TTGATGTAGGTCCTGGACAG+GGG 0.598139 4_4:-62096828 Msa0693210:intron
TTGTTGCGAAATATGGTGGT+GGG 0.599780 4_4:-62101504 Msa0693210:CDS
TCGAACGAAGAGGTTTCTTG+TGG 0.601788 4_4:+62102094 None:intergenic
TGAAGTGAAAGGTGTCATGA+TGG 0.602006 4_4:-62101252 Msa0693210:CDS
GGAGGTGAGTAAGCTTGCTA+AGG 0.602293 4_4:-62101291 Msa0693210:CDS
TATTCTTAAGAACGATTGGG+AGG 0.607627 4_4:+62096389 None:intergenic
CATACACAAGGTGACAAACA+AGG 0.607905 4_4:+62096090 None:intergenic
GTTGTTGCGGATGAAACGGT+TGG 0.620353 4_4:-62101571 Msa0693210:CDS
GCTCAGGTGTCTGAAGTGAA+AGG 0.620623 4_4:-62101263 Msa0693210:CDS
CGAGAAATCATTCATACACA+AGG 0.626938 4_4:+62096078 None:intergenic
CTCTTCGTTCGATAGATCTG+TGG 0.631898 4_4:-62102083 Msa0693210:five_prime_UTR
CACAGATCTATCGAACGAAG+AGG 0.643122 4_4:+62102084 None:intergenic
TGTAGCGTATTGTGTTGTTG+CGG 0.643271 4_4:-62101584 Msa0693210:intron
ATTATTATATGATGATGATG+AGG 0.648084 4_4:-62096315 Msa0693210:three_prime_UTR
TGCGAAATATGGTGGTGGGA+AGG 0.648574 4_4:-62101500 Msa0693210:CDS
TCTGAATACACCGAATTCAG+CGG 0.660683 4_4:-62101992 Msa0693210:CDS
ATCTACGCTTTCGTTTCTCG+CGG 0.661937 4_4:-62102028 Msa0693210:CDS
GGTTGGAAGACAAGTGCCGG+TGG 0.663656 4_4:-62101554 Msa0693210:CDS
ACACGTTCCAGAAAAGCCAC+CGG 0.669559 4_4:+62101538 None:intergenic
GATGTAGGTCCTGGACAGGG+GGG 0.679259 4_4:-62096826 Msa0693210:intron
ATAATGATAACAGGATGTGT+CGG 0.710316 4_4:+62096129 None:intergenic
AACTGTAGCCATTATCGACG+AGG 0.726012 4_4:+62101876 None:intergenic
GTATTGTGTTGATCACCCGG+AGG 0.776651 4_4:-62101312 Msa0693210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATTAAAAGTGATTTT+AGG - chr4_4:62096618-62096637 Msa0693210:intron 10.0%
!!! TTTTACAAAAATAGAAAATA+CGG - chr4_4:62097233-62097252 Msa0693210:intron 10.0%
!! AAAGTAAAAAATAATAACTT+GGG + chr4_4:62098596-62098615 None:intergenic 10.0%
!! AAAAGTAAAAAATAATAACT+TGG + chr4_4:62098597-62098616 None:intergenic 10.0%
!! TAAAGTAATAAAAATAGTAA+CGG + chr4_4:62099033-62099052 None:intergenic 10.0%
!!! ATTCTCTTTTTTTATTTATT+TGG - chr4_4:62100108-62100127 Msa0693210:intron 10.0%
!!! AAAAACATTCAAATTTTAGA+GGG + chr4_4:62097828-62097847 None:intergenic 15.0%
!!! AAATGATCAAATTTTGATTT+TGG + chr4_4:62098152-62098171 None:intergenic 15.0%
!!! AAATGAACAAATTTTGATTT+TGG + chr4_4:62098248-62098267 None:intergenic 15.0%
!! TTATTATATAAAATTGCACT+TGG - chr4_4:62098305-62098324 Msa0693210:intron 15.0%
!!! CATATTACTTTTTATGTTTT+TGG - chr4_4:62098388-62098407 Msa0693210:intron 15.0%
!! AAAGTAATAAAAATAGTAAC+GGG + chr4_4:62099032-62099051 None:intergenic 15.0%
!! TATAAAATGTCCTTTATTAA+TGG + chr4_4:62099134-62099153 None:intergenic 15.0%
!! AGTATATAACTTAATTGTTT+AGG - chr4_4:62100630-62100649 Msa0693210:intron 15.0%
!!! TTTCTACATAATTTAGTTTT+TGG + chr4_4:62101207-62101226 None:intergenic 15.0%
!!! CATTTTTTTATGATAAATGA+TGG - chr4_4:62101664-62101683 Msa0693210:intron 15.0%
!! TACTGATATAACTAATTTCT+AGG + chr4_4:62096579-62096598 None:intergenic 20.0%
!!! ATTAAAAGTGATTTTAGGTT+AGG - chr4_4:62096623-62096642 Msa0693210:intron 20.0%
!!! TTAAAAGTGATTTTAGGTTA+GGG - chr4_4:62096624-62096643 Msa0693210:intron 20.0%
!! TGTGATTTGATATTTAATTG+TGG - chr4_4:62096967-62096986 Msa0693210:intron 20.0%
!! GCATTAATTTCATAAAATAC+TGG + chr4_4:62097346-62097365 None:intergenic 20.0%
!! TATCTAAATTCTTACTCTTT+CGG - chr4_4:62097716-62097735 Msa0693210:intron 20.0%
!!! TTTTTAGTCATTGTAAAATG+AGG - chr4_4:62097781-62097800 Msa0693210:intron 20.0%
!!! CAAAAACATTCAAATTTTAG+AGG + chr4_4:62097829-62097848 None:intergenic 20.0%
!!! CTCTAAAATTTGAATGTTTT+TGG - chr4_4:62097827-62097846 Msa0693210:intron 20.0%
!!! TTAAAGGAAAAGAATTTTCA+TGG - chr4_4:62098059-62098078 Msa0693210:intron 20.0%
!! TTAAATACAATAGTAATCGT+GGG - chr4_4:62098802-62098821 Msa0693210:intron 20.0%
!! AGCATAAAAAATTTCAAAAC+TGG + chr4_4:62099501-62099520 None:intergenic 20.0%
!!! AGTTTTGAAATTTTTTATGC+TGG - chr4_4:62099500-62099519 Msa0693210:intron 20.0%
!!! ATCTCATTATTCTAAAACAA+GGG - chr4_4:62099771-62099790 Msa0693210:intron 20.0%
!! GAGAAAATTATAGTAAAATG+AGG + chr4_4:62099910-62099929 None:intergenic 20.0%
!!! TAAGTTATATACTTTTTTCC+TGG + chr4_4:62100623-62100642 None:intergenic 20.0%
!! TATAACTTAATTGTTTAGGT+TGG - chr4_4:62100634-62100653 Msa0693210:intron 20.0%
!!! TAAGTTACTTTTGTTCTAAA+TGG - chr4_4:62100696-62100715 Msa0693210:intron 20.0%
!!! TGAGATTGATTTAGAAAATA+TGG - chr4_4:62100921-62100940 Msa0693210:intron 20.0%
!! TTAGAAAATATGGTTCAATA+AGG - chr4_4:62100931-62100950 Msa0693210:intron 20.0%
!!! TTAGATCTAGATAGATTTTA+TGG - chr4_4:62101053-62101072 Msa0693210:intron 20.0%
!!! AGATTTTATGGAAGTTTTTT+TGG - chr4_4:62101065-62101084 Msa0693210:intron 20.0%
!! ATTTATTCTTAAGAACGATT+GGG + chr4_4:62101946-62101965 None:intergenic 20.0%
!! TATTTATTCTTAAGAACGAT+TGG + chr4_4:62101947-62101966 None:intergenic 20.0%
!!! ATTATTATATGATGATGATG+AGG - chr4_4:62102014-62102033 Msa0693210:CDS 20.0%
!! TGTAAAAACTTAAAAGTGAA+CGG + chr4_4:62102098-62102117 None:intergenic 20.0%
!!! TTTAAGTTTTTACAGTATGA+TGG - chr4_4:62102104-62102123 Msa0693210:five_prime_UTR 20.0%
! TTAGGTGTGTTTATAAAGTA+AGG + chr4_4:62096091-62096110 None:intergenic 25.0%
!!! TGAGAATAAAGAAAGTGTTT+AGG + chr4_4:62096109-62096128 None:intergenic 25.0%
! AAATTCACTTACAATTGTGA+TGG - chr4_4:62096415-62096434 Msa0693210:CDS 25.0%
! ATTTGATATTTAATTGTGGC+AGG - chr4_4:62096971-62096990 Msa0693210:intron 25.0%
!! TAGAAGAAAGTGTGTAAATT+TGG - chr4_4:62097200-62097219 Msa0693210:intron 25.0%
!!! TTTTCTAAAACTCAAAAGTC+CGG - chr4_4:62097493-62097512 Msa0693210:intron 25.0%
! AAGAAACTTTGATTGTTAGA+GGG - chr4_4:62098029-62098048 Msa0693210:intron 25.0%
! GTTAGAGGGATAAAAATTAA+AGG - chr4_4:62098043-62098062 Msa0693210:intron 25.0%
!!! GAAAGTTTTGCTTTTAGTTT+AGG + chr4_4:62098086-62098105 None:intergenic 25.0%
! CAAAACTTTCAAAGTTTGAA+AGG - chr4_4:62098096-62098115 Msa0693210:intron 25.0%
!!! AGATGAGCAAATTTTGATTT+TGG + chr4_4:62098202-62098221 None:intergenic 25.0%
! ATAGTTATTATGAGACAAAG+GGG + chr4_4:62098465-62098484 None:intergenic 25.0%
! GATAGTTATTATGAGACAAA+GGG + chr4_4:62098466-62098485 None:intergenic 25.0%
! TGATAGTTATTATGAGACAA+AGG + chr4_4:62098467-62098486 None:intergenic 25.0%
! GTTAAATACAATAGTAATCG+TGG - chr4_4:62098801-62098820 Msa0693210:intron 25.0%
! TTGCTAGAATGACATAATTT+GGG + chr4_4:62098952-62098971 None:intergenic 25.0%
! TTTGCTAGAATGACATAATT+TGG + chr4_4:62098953-62098972 None:intergenic 25.0%
!! GTTTTCCATACCATTAATAA+AGG - chr4_4:62099121-62099140 Msa0693210:intron 25.0%
! AATGTCCTTTATTAATGGTA+TGG + chr4_4:62099129-62099148 None:intergenic 25.0%
! TTTATGTGAAATTGCTAAAG+TGG - chr4_4:62099195-62099214 Msa0693210:intron 25.0%
! CTAAAGTGGCATATAAATTT+GGG - chr4_4:62099209-62099228 Msa0693210:intron 25.0%
!!! TGTTTTCTTATCTTTGAAGT+GGG + chr4_4:62099361-62099380 None:intergenic 25.0%
!!! TTGTTTTCTTATCTTTGAAG+TGG + chr4_4:62099362-62099381 None:intergenic 25.0%
! GTCCAATTAGACATTAAAAT+CGG + chr4_4:62099558-62099577 None:intergenic 25.0%
! CTTTGGTTAGAAATATTAGT+GGG - chr4_4:62099637-62099656 Msa0693210:intron 25.0%
! TTTGGTTAGAAATATTAGTG+GGG - chr4_4:62099638-62099657 Msa0693210:intron 25.0%
!!! GATCTCATTATTCTAAAACA+AGG - chr4_4:62099770-62099789 Msa0693210:intron 25.0%
!! ACTACATACTCATTATGTTT+TGG - chr4_4:62100199-62100218 Msa0693210:intron 25.0%
! CAAAAGCTGCAAATAAATAA+GGG - chr4_4:62100275-62100294 Msa0693210:intron 25.0%
!!! TTGGATTTTTTGTGTTCAAT+TGG - chr4_4:62100341-62100360 Msa0693210:intron 25.0%
! TTCATGCAATAAAGGAAATT+TGG + chr4_4:62100547-62100566 None:intergenic 25.0%
! ATGTTTGTTTCATGCAATAA+AGG + chr4_4:62100555-62100574 None:intergenic 25.0%
! TTTATTACCTAATGAAGTAG+TGG - chr4_4:62100586-62100605 Msa0693210:intron 25.0%
!!! ATTGTTTAGGTTGGATTTTA+AGG - chr4_4:62100643-62100662 Msa0693210:intron 25.0%
!!! TTGTTTAGGTTGGATTTTAA+GGG - chr4_4:62100644-62100663 Msa0693210:intron 25.0%
! ATACACAATAAACCAAAAGA+TGG + chr4_4:62100775-62100794 None:intergenic 25.0%
! GTTTATTGTGTATTTCATTG+TGG - chr4_4:62100782-62100801 Msa0693210:intron 25.0%
! TTTGATCACAACTTTGAATA+TGG + chr4_4:62100851-62100870 None:intergenic 25.0%
!!! ACTTCTATTTTTATTGCTCA+TGG - chr4_4:62101124-62101143 Msa0693210:intron 25.0%
!! CCTTTTCTATACAATACATA+TGG + chr4_4:62101351-62101370 None:intergenic 25.0%
! CCATATGTATTGTATAGAAA+AGG - chr4_4:62101348-62101367 Msa0693210:intron 25.0%
!! TCGATTTGAAGAAAAAAAAC+AGG + chr4_4:62101775-62101794 None:intergenic 25.0%
! ATTGCATGAATAATGATAAC+AGG + chr4_4:62102212-62102231 None:intergenic 25.0%
AATTACAAAGCCCTCTATTA+AGG + chr4_4:62096064-62096083 None:intergenic 30.0%
! GATGATTTTGTTGCGAAATA+TGG - chr4_4:62096818-62096837 Msa0693210:CDS 30.0%
AATTCCTTATTCAAGCTGTT+AGG + chr4_4:62096869-62096888 None:intergenic 30.0%
AACAGCTTGAATAAGGAATT+TGG - chr4_4:62096869-62096888 Msa0693210:intron 30.0%
ACAGCTTGAATAAGGAATTT+GGG - chr4_4:62096870-62096889 Msa0693210:intron 30.0%
!! TGTGAGTTTGATGATGATTT+AGG - chr4_4:62096909-62096928 Msa0693210:intron 30.0%
!! GTGAGTTTGATGATGATTTA+GGG - chr4_4:62096910-62096929 Msa0693210:intron 30.0%
!!! TTGCGATTTTTGTTGTTGAT+GGG - chr4_4:62096937-62096956 Msa0693210:intron 30.0%
! TGCATATGTTCCTTCAATTT+TGG + chr4_4:62096997-62097016 None:intergenic 30.0%
! CATGATGGAGAATATTGAAA+AGG - chr4_4:62097092-62097111 Msa0693210:intron 30.0%
AACATTCGTATCGTATGTAA+AGG + chr4_4:62097289-62097308 None:intergenic 30.0%
TTCATACTGCACAATTCATT+AGG - chr4_4:62097418-62097437 Msa0693210:intron 30.0%
TTGAAAGTCATAAGAGTCTT+TGG - chr4_4:62097447-62097466 Msa0693210:intron 30.0%
ACACGTGTAAGAGATATATT+AGG - chr4_4:62097748-62097767 Msa0693210:intron 30.0%
AGTTAGCTGGTGATATATAA+TGG + chr4_4:62097859-62097878 None:intergenic 30.0%
CCATTATTGGGTATCAATAA+GGG + chr4_4:62097915-62097934 None:intergenic 30.0%
! TTCATTTTACAGCTCAAGAA+AGG + chr4_4:62097974-62097993 None:intergenic 30.0%
AATCAAAGTTTCTTGGTACT+TGG + chr4_4:62098023-62098042 None:intergenic 30.0%
CTCTAACAATCAAAGTTTCT+TGG + chr4_4:62098030-62098049 None:intergenic 30.0%
CAAGAAACTTTGATTGTTAG+AGG - chr4_4:62098028-62098047 Msa0693210:intron 30.0%
TAGTTATTATGAGACAAAGG+GGG + chr4_4:62098464-62098483 None:intergenic 30.0%
!! AAAGTGACACTCTTTTAAGA+CGG + chr4_4:62098505-62098524 None:intergenic 30.0%
TACTAGTTAGATGGTACATT+TGG + chr4_4:62098559-62098578 None:intergenic 30.0%
TGAACATTGTACTAGTTAGA+TGG + chr4_4:62098568-62098587 None:intergenic 30.0%
TAGAATGACATAATTTGGGA+CGG + chr4_4:62098948-62098967 None:intergenic 30.0%
GCTAAAGTGGCATATAAATT+TGG - chr4_4:62099208-62099227 Msa0693210:intron 30.0%
CGAATATAAAGAGAAATTGC+AGG - chr4_4:62099332-62099351 Msa0693210:intron 30.0%
!! AAAATGGATTGACTGGATAA+TGG + chr4_4:62099421-62099440 None:intergenic 30.0%
!! AGAAATGAAAATGGATTGAC+TGG + chr4_4:62099428-62099447 None:intergenic 30.0%
!! GGTTTGTTAACTACAATAAC+CGG - chr4_4:62099458-62099477 Msa0693210:intron 30.0%
AATTAGACATTAAAATCGGC+TGG + chr4_4:62099554-62099573 None:intergenic 30.0%
!! AGCCGATTTTAATGTCTAAT+TGG - chr4_4:62099553-62099572 Msa0693210:intron 30.0%
! TTTTAATGTCTAATTGGACC+AGG - chr4_4:62099559-62099578 Msa0693210:intron 30.0%
! GTTCTAGTTATGATTACCTT+TGG - chr4_4:62099620-62099639 Msa0693210:intron 30.0%
! CCACTAATATTTCTAACCAA+AGG + chr4_4:62099639-62099658 None:intergenic 30.0%
CCTTTGGTTAGAAATATTAG+TGG - chr4_4:62099636-62099655 Msa0693210:intron 30.0%
TTGGTTAGAAATATTAGTGG+GGG - chr4_4:62099639-62099658 Msa0693210:intron 30.0%
TCAATCATGTAGTGATAAAG+TGG + chr4_4:62099719-62099738 None:intergenic 30.0%
!! CTGTTTTCATTTTTCTGCTA+CGG - chr4_4:62099849-62099868 Msa0693210:intron 30.0%
ATATTGTACTTCTGTAGCAT+AGG - chr4_4:62099932-62099951 Msa0693210:intron 30.0%
!! CCTTATTTATTTGCAGCTTT+TGG + chr4_4:62100277-62100296 None:intergenic 30.0%
CCAAAAGCTGCAAATAAATA+AGG - chr4_4:62100274-62100293 Msa0693210:intron 30.0%
AATTGGTTGTACACCTAATT+TGG - chr4_4:62100358-62100377 Msa0693210:intron 30.0%
ATTGGTTGTACACCTAATTT+GGG - chr4_4:62100359-62100378 Msa0693210:intron 30.0%
AATGCATTCAATCTGAAAAG+AGG + chr4_4:62100453-62100472 None:intergenic 30.0%
CAACAAAACATAGACAATGT+GGG + chr4_4:62100477-62100496 None:intergenic 30.0%
!! TCTATGTTTTGTTGGTGTTT+GGG - chr4_4:62100483-62100502 Msa0693210:intron 30.0%
!! ATTTTAAGGGAGCTAATGAT+AGG - chr4_4:62100657-62100676 Msa0693210:intron 30.0%
!! TTTTAAGGGAGCTAATGATA+GGG - chr4_4:62100658-62100677 Msa0693210:intron 30.0%
! TTGTTCTAAATGGAGATAGA+AGG - chr4_4:62100706-62100725 Msa0693210:intron 30.0%
ACTTTGAATATGGAATTCAG+AGG + chr4_4:62100841-62100860 None:intergenic 30.0%
ATCTATCCTTAAGTTCTTTC+AGG - chr4_4:62100973-62100992 Msa0693210:intron 30.0%
!!! GCATTTTGATTGCATATTGA+AGG - chr4_4:62101301-62101320 Msa0693210:CDS 30.0%
! AGAAAAAGCAGTCAAGTTTT+TGG - chr4_4:62101411-62101430 Msa0693210:intron 30.0%
CAATTATGAGACATCAAATC+AGG + chr4_4:62101444-62101463 None:intergenic 30.0%
! ACATGTTTGAAACTTGATGT+AGG - chr4_4:62101488-62101507 Msa0693210:CDS 30.0%
TTAGTAATTGTGTGATTGGA+AGG - chr4_4:62101574-62101593 Msa0693210:CDS 30.0%
TGAAGAAAAAAAACAGGCAA+TGG + chr4_4:62101769-62101788 None:intergenic 30.0%
!!! TTCTAACTTGCTGTTTTATG+AGG - chr4_4:62101801-62101820 Msa0693210:intron 30.0%
GAAGATAAAGCTGATTGTAT+TGG - chr4_4:62101886-62101905 Msa0693210:CDS 30.0%
GAAATCAAACTACAATAGAC+AGG + chr4_4:62102167-62102186 None:intergenic 30.0%
ATAATGATAACAGGATGTGT+CGG + chr4_4:62102203-62102222 None:intergenic 30.0%
! AAGCGTAGATCAGAGATTTT+TGG + chr4_4:62096291-62096310 None:intergenic 35.0%
!! GTGAATTTGTTGTTAGAAGC+TGG + chr4_4:62096403-62096422 None:intergenic 35.0%
ATTATCGACGAGGTAATTGA+AGG + chr4_4:62096446-62096465 None:intergenic 35.0%
TTCAATTACCTCGTCGATAA+TGG - chr4_4:62096445-62096464 Msa0693210:CDS 35.0%
! GATTTTGTTGCGAAATATGG+TGG - chr4_4:62096821-62096840 Msa0693210:CDS 35.0%
!!! GTTGCGATTTTTGTTGTTGA+TGG - chr4_4:62096936-62096955 Msa0693210:intron 35.0%
CTCTTCTACTTTAACCTAAG+AGG - chr4_4:62097119-62097138 Msa0693210:intron 35.0%
TCGCATCATATAATCCTCTT+AGG + chr4_4:62097136-62097155 None:intergenic 35.0%
ATTATATGATGCGAGCTGAA+TGG - chr4_4:62097142-62097161 Msa0693210:intron 35.0%
! GCATTTTGCTCATGTTGTAT+TGG - chr4_4:62097364-62097383 Msa0693210:intron 35.0%
TAAACAGAAAACCCAAGACT+CGG + chr4_4:62097555-62097574 None:intergenic 35.0%
CTGCTTATGGGTCTAATAAA+AGG - chr4_4:62097877-62097896 Msa0693210:intron 35.0%
TATTGGGTATCAATAAGGGA+TGG + chr4_4:62097911-62097930 None:intergenic 35.0%
CCCTTATTGATACCCAATAA+TGG - chr4_4:62097912-62097931 Msa0693210:intron 35.0%
GCCATTATTGGGTATCAATA+AGG + chr4_4:62097916-62097935 None:intergenic 35.0%
!! AATTGCACTTGGCTTTTGAA+AGG - chr4_4:62098316-62098335 Msa0693210:intron 35.0%
TTTGCTTCTTCTGTGTGAAA+TGG - chr4_4:62098779-62098798 Msa0693210:intron 35.0%
ATACAATAGTAATCGTGGGA+CGG - chr4_4:62098806-62098825 Msa0693210:intron 35.0%
ACCTATTAACAGTCAAACCT+TGG - chr4_4:62099258-62099277 Msa0693210:intron 35.0%
TCCAAGGTTTGACTGTTAAT+AGG + chr4_4:62099262-62099281 None:intergenic 35.0%
TTAACAGTCAAACCTTGGAA+TGG - chr4_4:62099263-62099282 Msa0693210:intron 35.0%
! AATTTGCCTTTTCCATTCCA+AGG + chr4_4:62099278-62099297 None:intergenic 35.0%
!!! TTCAGTTTTGTGTACTGACT+AGG + chr4_4:62099302-62099321 None:intergenic 35.0%
GTAATCATAACTAGAACAGC+CGG + chr4_4:62099617-62099636 None:intergenic 35.0%
TGGTTAGAAATATTAGTGGG+GGG - chr4_4:62099640-62099659 Msa0693210:intron 35.0%
!! TAGTGATAAAGTGGTTTGGT+AGG + chr4_4:62099710-62099729 None:intergenic 35.0%
CATGTAGTGATAAAGTGGTT+TGG + chr4_4:62099714-62099733 None:intergenic 35.0%
!! TTTTCATTTTTCTGCTACGG+AGG - chr4_4:62099852-62099871 Msa0693210:intron 35.0%
! TGTACACCTAATTTGGGATA+AGG - chr4_4:62100365-62100384 Msa0693210:intron 35.0%
AACCTTCCTTATCCCAAATT+AGG + chr4_4:62100374-62100393 None:intergenic 35.0%
AAGAGGAATGCAAACTTAGT+CGG + chr4_4:62100436-62100455 None:intergenic 35.0%
CCAACAAAACATAGACAATG+TGG + chr4_4:62100478-62100497 None:intergenic 35.0%
! CCACATTGTCTATGTTTTGT+TGG - chr4_4:62100475-62100494 Msa0693210:intron 35.0%
!! GTCTATGTTTTGTTGGTGTT+TGG - chr4_4:62100482-62100501 Msa0693210:intron 35.0%
ACATCATCCACTACTTCATT+AGG + chr4_4:62100596-62100615 None:intergenic 35.0%
ACAATAAACCAAAAGATGGC+AGG + chr4_4:62100771-62100790 None:intergenic 35.0%
AGGAAGTGATAATCGAAACA+TGG + chr4_4:62100810-62100829 None:intergenic 35.0%
TCAATTTATTGCACCCCTAT+GGG + chr4_4:62100904-62100923 None:intergenic 35.0%
!! CTCTCTACTTTTCTTCTGAT+AGG + chr4_4:62101393-62101412 None:intergenic 35.0%
! AATTACTAACCTGGTGATGA+AGG + chr4_4:62101563-62101582 None:intergenic 35.0%
CAATCACACAATTACTAACC+TGG + chr4_4:62101572-62101591 None:intergenic 35.0%
CAGGTTAGTAATTGTGTGAT+TGG - chr4_4:62101570-62101589 Msa0693210:CDS 35.0%
AGATCTTTACCATAACACTC+GGG + chr4_4:62101694-62101713 None:intergenic 35.0%
GAGATCTTTACCATAACACT+CGG + chr4_4:62101695-62101714 None:intergenic 35.0%
TATTCTTAAGAACGATTGGG+AGG + chr4_4:62101943-62101962 None:intergenic 35.0%
GAATAAATAAACGCCACTCT+CGG - chr4_4:62101958-62101977 Msa0693210:CDS 35.0%
! TGATGATGAGGAAAGATATC+AGG - chr4_4:62102026-62102045 Msa0693210:CDS 35.0%
CTTAAAAGTGAACGGTATAC+AGG + chr4_4:62102090-62102109 None:intergenic 35.0%
CGAGAAATCATTCATACACA+AGG + chr4_4:62102254-62102273 None:intergenic 35.0%
TAGATCTGTGGAGAAGAAGA+TGG - chr4_4:62096258-62096277 Msa0693210:three_prime_UTR 40.0%
AGATCTGTGGAGAAGAAGAT+GGG - chr4_4:62096259-62096278 Msa0693210:three_prime_UTR 40.0%
TCTGAATACACCGAATTCAG+CGG - chr4_4:62096337-62096356 Msa0693210:three_prime_UTR 40.0%
GTTGAAGTTTCCGCTGAATT+CGG + chr4_4:62096350-62096369 None:intergenic 40.0%
GAACTACGATTACGCTAGAT+CGG + chr4_4:62096527-62096546 None:intergenic 40.0%
! TGTAGCGTATTGTGTTGTTG+CGG - chr4_4:62096745-62096764 Msa0693210:intron 40.0%
! TTGTGTTGTTGCGGATGAAA+CGG - chr4_4:62096754-62096773 Msa0693210:intron 40.0%
TTTGTTGCGAAATATGGTGG+TGG - chr4_4:62096824-62096843 Msa0693210:intron 40.0%
TTGTTGCGAAATATGGTGGT+GGG - chr4_4:62096825-62096844 Msa0693210:intron 40.0%
TGCACCTAACAGCTTGAATA+AGG - chr4_4:62096862-62096881 Msa0693210:intron 40.0%
!! TGAAGTGAAAGGTGTCATGA+TGG - chr4_4:62097077-62097096 Msa0693210:intron 40.0%
! AGAGTCTTTGGAGAGACAAA+AGG - chr4_4:62097459-62097478 Msa0693210:intron 40.0%
! GAGTCTTTGGAGAGACAAAA+GGG - chr4_4:62097460-62097479 Msa0693210:intron 40.0%
! AGTCTTTGGAGAGACAAAAG+GGG - chr4_4:62097461-62097480 Msa0693210:intron 40.0%
ATGTCTTCTTAACCGAGTCT+TGG - chr4_4:62097540-62097559 Msa0693210:intron 40.0%
TGTCTTCTTAACCGAGTCTT+GGG - chr4_4:62097541-62097560 Msa0693210:intron 40.0%
GCTGGTGATATATAATGGCA+GGG + chr4_4:62097854-62097873 None:intergenic 40.0%
AGCTGGTGATATATAATGGC+AGG + chr4_4:62097855-62097874 None:intergenic 40.0%
TATCACCAGCTAACTGCTTA+TGG - chr4_4:62097864-62097883 Msa0693210:intron 40.0%
ATCACCAGCTAACTGCTTAT+GGG - chr4_4:62097865-62097884 Msa0693210:intron 40.0%
GGGTCTAATAAAAGGTCATC+TGG - chr4_4:62097885-62097904 Msa0693210:intron 40.0%
TTGATACCCAATAATGGCTG+TGG - chr4_4:62097918-62097937 Msa0693210:intron 40.0%
ATGACACCACAGCCATTATT+GGG + chr4_4:62097927-62097946 None:intergenic 40.0%
! CAGCTCAAGAAAGGTTTTTC+AGG + chr4_4:62097965-62097984 None:intergenic 40.0%
GGTACTTGGCAATTACTTCA+GGG + chr4_4:62098009-62098028 None:intergenic 40.0%
TGGTACTTGGCAATTACTTC+AGG + chr4_4:62098010-62098029 None:intergenic 40.0%
CATATCCCACTAAGTGTGAT+CGG - chr4_4:62098695-62098714 Msa0693210:intron 40.0%
TACAATAGTAATCGTGGGAC+GGG - chr4_4:62098807-62098826 Msa0693210:intron 40.0%
! ATGACATAATTTGGGACGGA+GGG + chr4_4:62098944-62098963 None:intergenic 40.0%
! AATGACATAATTTGGGACGG+AGG + chr4_4:62098945-62098964 None:intergenic 40.0%
GTCAAACCTTGGAATGGAAA+AGG - chr4_4:62099269-62099288 Msa0693210:intron 40.0%
CACACGCACAGAAATGAAAA+TGG + chr4_4:62099437-62099456 None:intergenic 40.0%
! TTTTCATTTCTGTGCGTGTG+TGG - chr4_4:62099437-62099456 Msa0693210:intron 40.0%
TACAATAACCGGTCAATCAC+AGG - chr4_4:62099469-62099488 Msa0693210:intron 40.0%
TGGTTTACCAACTTGTAGTC+CGG - chr4_4:62099520-62099539 Msa0693210:intron 40.0%
ATAAGAACCGGACTACAAGT+TGG + chr4_4:62099530-62099549 None:intergenic 40.0%
GGTTAGAAATATTAGTGGGG+GGG - chr4_4:62099641-62099660 Msa0693210:intron 40.0%
! GTTTGGTAGGAGGTACATAA+AGG + chr4_4:62099697-62099716 None:intergenic 40.0%
!! TGATAAAGTGGTTTGGTAGG+AGG + chr4_4:62099707-62099726 None:intergenic 40.0%
! AAAGAGAGTGCAGAATGAGT+GGG + chr4_4:62099810-62099829 None:intergenic 40.0%
! AAAAGAGAGTGCAGAATGAG+TGG + chr4_4:62099811-62099830 None:intergenic 40.0%
!! AGGCTTGACACAGTCATTTT+TGG - chr4_4:62099952-62099971 Msa0693210:intron 40.0%
!!! GGCTTGACACAGTCATTTTT+GGG - chr4_4:62099953-62099972 Msa0693210:intron 40.0%
!!! GCTTGACACAGTCATTTTTG+GGG - chr4_4:62099954-62099973 Msa0693210:intron 40.0%
!!! CTTGACACAGTCATTTTTGG+GGG - chr4_4:62099955-62099974 Msa0693210:intron 40.0%
CTTCCATTTCTTAGACTCTG+AGG + chr4_4:62099981-62100000 None:intergenic 40.0%
TGTTCGATGTCCACAAACAT+GGG - chr4_4:62100063-62100082 Msa0693210:intron 40.0%
!! TAAAGGTACCCAAGCAAACT+CGG + chr4_4:62100152-62100171 None:intergenic 40.0%
! CACCTAATTTGGGATAAGGA+AGG - chr4_4:62100369-62100388 Msa0693210:intron 40.0%
! CATCTTCAAGTGCTGTTGAT+GGG - chr4_4:62100743-62100762 Msa0693210:intron 40.0%
! ATCTTCAAGTGCTGTTGATG+GGG - chr4_4:62100744-62100763 Msa0693210:intron 40.0%
!! GGAATTCAGAGGCATCAAAT+AGG + chr4_4:62100830-62100849 None:intergenic 40.0%
CTCAATTTATTGCACCCCTA+TGG + chr4_4:62100905-62100924 None:intergenic 40.0%
CGATAGCCTGAAAGAACTTA+AGG + chr4_4:62100982-62101001 None:intergenic 40.0%
! CTTGCTTGAAACTAGTCTCA+TGG - chr4_4:62101002-62101021 Msa0693210:intron 40.0%
TTGAAGCTATGCTCTTCACT+AGG - chr4_4:62101181-62101200 Msa0693210:intron 40.0%
CTAGCAAGCATTTGTAGACA+TGG - chr4_4:62101263-62101282 Msa0693210:CDS 40.0%
TTGAAACTTGATGTAGGTCC+TGG - chr4_4:62101494-62101513 Msa0693210:CDS 40.0%
ATCCCACACAAAAGATGAGT+CGG - chr4_4:62101728-62101747 Msa0693210:intron 40.0%
!!! AACTTGCTGTTTTATGAGGC+AGG - chr4_4:62101805-62101824 Msa0693210:intron 40.0%
! CCACATTTTTCTGCGGATTT+TGG + chr4_4:62101855-62101874 None:intergenic 40.0%
CCAAAATCCGCAGAAAAATG+TGG - chr4_4:62101852-62101871 Msa0693210:intron 40.0%
! TTTGCAGCCACATTTTTCTG+CGG + chr4_4:62101862-62101881 None:intergenic 40.0%
AAGATAAATGTCTCCGAGAG+TGG + chr4_4:62101974-62101993 None:intergenic 40.0%
CATACACAAGGTGACAAACA+AGG + chr4_4:62102242-62102261 None:intergenic 40.0%
GTTTCTTGTGGTTGTGGTGA+TGG + chr4_4:62096226-62096245 None:intergenic 45.0%
GAAGAGGTTTCTTGTGGTTG+TGG + chr4_4:62096232-62096251 None:intergenic 45.0%
TCGAACGAAGAGGTTTCTTG+TGG + chr4_4:62096238-62096257 None:intergenic 45.0%
CACAGATCTATCGAACGAAG+AGG + chr4_4:62096248-62096267 None:intergenic 45.0%
CTCTTCGTTCGATAGATCTG+TGG - chr4_4:62096246-62096265 Msa0693210:three_prime_UTR 45.0%
ATCTACGCTTTCGTTTCTCG+CGG - chr4_4:62096301-62096320 Msa0693210:three_prime_UTR 45.0%
!! CTGAAGGCATTGAAAAGCGA+TGG + chr4_4:62096374-62096393 None:intergenic 45.0%
TAGAAGCTGGAAGCTTCTGA+AGG + chr4_4:62096390-62096409 None:intergenic 45.0%
AACTGTAGCCATTATCGACG+AGG + chr4_4:62096456-62096475 None:intergenic 45.0%
TTGTGGCAGGCCAAAATTGA+AGG - chr4_4:62096984-62097003 Msa0693210:intron 45.0%
! GCAGTATTGTGTTGATCACC+CGG - chr4_4:62097014-62097033 Msa0693210:intron 45.0%
!! GAGTAAGCTTGCTAAGGTGA+AGG - chr4_4:62097044-62097063 Msa0693210:intron 45.0%
ACTTCGCGGTCTCACTTATT+AGG + chr4_4:62097315-62097334 None:intergenic 45.0%
! GTCTTTGGAGAGACAAAAGG+GGG - chr4_4:62097462-62097481 Msa0693210:intron 45.0%
ATACGTAACGCAGAACAAGC+CGG + chr4_4:62097515-62097534 None:intergenic 45.0%
TAGACCCATAAGCAGTTAGC+TGG + chr4_4:62097872-62097891 None:intergenic 45.0%
CATGACACCACAGCCATTAT+TGG + chr4_4:62097928-62097947 None:intergenic 45.0%
CGATCACACTTAGTGGGATA+TGG + chr4_4:62098697-62098716 None:intergenic 45.0%
TGTAGCCGATCACACTTAGT+GGG + chr4_4:62098703-62098722 None:intergenic 45.0%
ATGTAGCCGATCACACTTAG+TGG + chr4_4:62098704-62098723 None:intergenic 45.0%
ACTAAGTGTGATCGGCTACA+TGG - chr4_4:62098703-62098722 Msa0693210:intron 45.0%
GGTCAAAACCTGTGATTGAC+CGG + chr4_4:62099480-62099499 None:intergenic 45.0%
AAATCGGCTGGCATAAGAAC+CGG + chr4_4:62099542-62099561 None:intergenic 45.0%
AATTGGACCAGGCAGAGTTA+CGG - chr4_4:62099570-62099589 Msa0693210:intron 45.0%
! AAGAGAGTGCAGAATGAGTG+GGG + chr4_4:62099809-62099828 None:intergenic 45.0%
GAGTCACTTGCTCATGCTAT+CGG - chr4_4:62099882-62099901 Msa0693210:intron 45.0%
CTGTTCGATGTCCACAAACA+TGG - chr4_4:62100062-62100081 Msa0693210:intron 45.0%
CCTACACTATCCCATGTTTG+TGG + chr4_4:62100076-62100095 None:intergenic 45.0%
CCACAAACATGGGATAGTGT+AGG - chr4_4:62100073-62100092 Msa0693210:intron 45.0%
! TTATGACTCCCGAGTTTGCT+TGG - chr4_4:62100140-62100159 Msa0693210:intron 45.0%
! TATGACTCCCGAGTTTGCTT+GGG - chr4_4:62100141-62100160 Msa0693210:intron 45.0%
!! AAAGGTACCCAAGCAAACTC+GGG + chr4_4:62100151-62100170 None:intergenic 45.0%
TGGGATAAGGAAGGTTCACA+AGG - chr4_4:62100378-62100397 Msa0693210:intron 45.0%
AAGGAAGGTTCACAAGGACT+AGG - chr4_4:62100384-62100403 Msa0693210:intron 45.0%
AGGAAGGTTCACAAGGACTA+GGG - chr4_4:62100385-62100404 Msa0693210:intron 45.0%
TTCACAAGGACTAGGGTTCA+AGG - chr4_4:62100392-62100411 Msa0693210:intron 45.0%
TCACAAGGACTAGGGTTCAA+GGG - chr4_4:62100393-62100412 Msa0693210:intron 45.0%
AGCTAATGATAGGGTGAGTC+AGG - chr4_4:62100667-62100686 Msa0693210:intron 45.0%
GCTAATGATAGGGTGAGTCA+GGG - chr4_4:62100668-62100687 Msa0693210:intron 45.0%
ACTTGAAGATGGAGACGCAA+GGG + chr4_4:62100734-62100753 None:intergenic 45.0%
CCATCAACAGCACTTGAAGA+TGG + chr4_4:62100745-62100764 None:intergenic 45.0%
! CCATCTTCAAGTGCTGTTGA+TGG - chr4_4:62100742-62100761 Msa0693210:intron 45.0%
GTATGTAGCCATAGCCCATA+GGG - chr4_4:62100887-62100906 Msa0693210:intron 45.0%
TATGTAGCCATAGCCCATAG+GGG - chr4_4:62100888-62100907 Msa0693210:intron 45.0%
! GGGGGAAAAGATAGAGCTTT+TGG - chr4_4:62101521-62101540 Msa0693210:CDS 45.0%
! ATCTTTTGTGTGGGATGGAG+AGG + chr4_4:62101724-62101743 None:intergenic 45.0%
! GACTCATCTTTTGTGTGGGA+TGG + chr4_4:62101729-62101748 None:intergenic 45.0%
TCCCACACAAAAGATGAGTC+GGG - chr4_4:62101729-62101748 Msa0693210:intron 45.0%
CACAAGACTTCAGGAACTCA+GGG - chr4_4:62101828-62101847 Msa0693210:intron 45.0%
CGATTGGGAGGACAATTATG+AGG + chr4_4:62101931-62101950 None:intergenic 45.0%
!! TATATAATAAATACTATATT+GGG + chr4_4:62098295-62098314 None:intergenic 5.0%
!! TTATATAATAAATACTATAT+TGG + chr4_4:62098296-62098315 None:intergenic 5.0%
!! TATTATAGAAAATAATATAA+TGG + chr4_4:62100021-62100040 None:intergenic 5.0%
!! AAAAAAAAAAAACATAATAA+AGG + chr4_4:62100169-62100188 None:intergenic 5.0%
!!! TTTATTATGTTTTTTTTTTT+TGG - chr4_4:62100168-62100187 Msa0693210:intron 5.0%
!! TTAAATATAACAAAAAAAAT+TGG - chr4_4:62100322-62100341 Msa0693210:intron 5.0%
GTTGTTGCGGATGAAACGGT+TGG - chr4_4:62096758-62096777 Msa0693210:intron 50.0%
AACGGTTGGAAGACAAGTGC+CGG - chr4_4:62096772-62096791 Msa0693210:intron 50.0%
ACACGTTCCAGAAAAGCCAC+CGG + chr4_4:62096794-62096813 None:intergenic 50.0%
!!! GGCTTTTCTGGAACGTGTGA+AGG - chr4_4:62096796-62096815 Msa0693210:CDS 50.0%
!! TGCGAAATATGGTGGTGGGA+AGG - chr4_4:62096829-62096848 Msa0693210:intron 50.0%
! GTATTGTGTTGATCACCCGG+AGG - chr4_4:62097017-62097036 Msa0693210:intron 50.0%
!! GGAGGTGAGTAAGCTTGCTA+AGG - chr4_4:62097038-62097057 Msa0693210:intron 50.0%
! GCTCAGGTGTCTGAAGTGAA+AGG - chr4_4:62097066-62097085 Msa0693210:intron 50.0%
TACTGGCCAGACTAACTTCG+CGG + chr4_4:62097329-62097348 None:intergenic 50.0%
TTTGGAGAGACAAAAGGGGG+AGG - chr4_4:62097465-62097484 Msa0693210:intron 50.0%
TTGGAGAGACAAAAGGGGGA+GGG - chr4_4:62097466-62097485 Msa0693210:intron 50.0%
CTTGGTTCAACCAGCTGAAC+CGG - chr4_4:62099595-62099614 Msa0693210:intron 50.0%
! AGAGAGTGCAGAATGAGTGG+GGG + chr4_4:62099808-62099827 None:intergenic 50.0%
GGGCCTCAGAGTCTAAGAAA+TGG - chr4_4:62099975-62099994 Msa0693210:intron 50.0%
CACAAGGACTAGGGTTCAAG+GGG - chr4_4:62100394-62100413 Msa0693210:intron 50.0%
!! GTAGTGGATGATGTTACGCC+AGG - chr4_4:62100602-62100621 Msa0693210:intron 50.0%
CTTGAAGATGGAGACGCAAG+GGG + chr4_4:62100733-62100752 None:intergenic 50.0%
CACTTGAAGATGGAGACGCA+AGG + chr4_4:62100735-62100754 None:intergenic 50.0%
CGTATGTAGCCATAGCCCAT+AGG - chr4_4:62100886-62100905 Msa0693210:intron 50.0%
! TATTGCACCCCTATGGGCTA+TGG + chr4_4:62100898-62100917 None:intergenic 50.0%
ACTTGATGTAGGTCCTGGAC+AGG - chr4_4:62101499-62101518 Msa0693210:CDS 50.0%
CTTGATGTAGGTCCTGGACA+GGG - chr4_4:62101500-62101519 Msa0693210:CDS 50.0%
TTGATGTAGGTCCTGGACAG+GGG - chr4_4:62101501-62101520 Msa0693210:CDS 50.0%
GACTGAGAACCTTCATCACC+AGG - chr4_4:62101551-62101570 Msa0693210:CDS 50.0%
TTGTGTGGGATGGAGAGGAA+GGG + chr4_4:62101719-62101738 None:intergenic 50.0%
TTTGTGTGGGATGGAGAGGA+AGG + chr4_4:62101720-62101739 None:intergenic 50.0%
! CCCCGACTCATCTTTTGTGT+GGG + chr4_4:62101733-62101752 None:intergenic 50.0%
CCCACACAAAAGATGAGTCG+GGG - chr4_4:62101730-62101749 Msa0693210:intron 50.0%
CCACACAAAAGATGAGTCGG+GGG - chr4_4:62101731-62101750 Msa0693210:intron 50.0%
GCACAAGACTTCAGGAACTC+AGG - chr4_4:62101827-62101846 Msa0693210:intron 50.0%
!!! ACAAGTGCCGGTGGCTTTTC+TGG - chr4_4:62096784-62096803 Msa0693210:CDS 55.0%
! TTGTGTTGATCACCCGGAGG+AGG - chr4_4:62097020-62097039 Msa0693210:intron 55.0%
CAAGCTTACTCACCTCCTCC+GGG + chr4_4:62097035-62097054 None:intergenic 55.0%
GCAAGCTTACTCACCTCCTC+CGG + chr4_4:62097036-62097055 None:intergenic 55.0%
! GCTTGCTAAGGTGAAGGCTC+AGG - chr4_4:62097050-62097069 Msa0693210:intron 55.0%
GTGAGACCGCGAAGTTAGTC+TGG - chr4_4:62097320-62097339 Msa0693210:intron 55.0%
CCAAGAACCGTAACTCTGCC+TGG + chr4_4:62099580-62099599 None:intergenic 55.0%
CCAGGCAGAGTTACGGTTCT+TGG - chr4_4:62099577-62099596 Msa0693210:intron 55.0%
! ACTAGAACAGCCGGTTCAGC+TGG + chr4_4:62099608-62099627 None:intergenic 55.0%
! GATGGGGACCTGCCATCTTT+TGG - chr4_4:62100760-62100779 Msa0693210:intron 55.0%
TGATGTAGGTCCTGGACAGG+GGG - chr4_4:62101502-62101521 Msa0693210:CDS 55.0%
! CTATCTTTTCCCCCCTGTCC+AGG + chr4_4:62101515-62101534 None:intergenic 55.0%
GATGGCTCTCCCGAGTGTTA+TGG - chr4_4:62101682-62101701 Msa0693210:intron 55.0%
TGTGTGGGATGGAGAGGAAG+GGG + chr4_4:62101718-62101737 None:intergenic 55.0%
! CCCCCGACTCATCTTTTGTG+TGG + chr4_4:62101734-62101753 None:intergenic 55.0%
TGAGGCAGGCACAAGACTTC+AGG - chr4_4:62101819-62101838 Msa0693210:intron 55.0%
!! GGTTGGAAGACAAGTGCCGG+TGG - chr4_4:62096775-62096794 Msa0693210:intron 60.0%
GATGTAGGTCCTGGACAGGG+GGG - chr4_4:62101503-62101522 Msa0693210:CDS 60.0%
GTGTGGGATGGAGAGGAAGG+GGG + chr4_4:62101717-62101736 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62096055 62102296 62096055 ID=Msa0693210;Name=Msa0693210
chr4_4 mRNA 62096055 62102296 62096055 ID=Msa0693210-mRNA-1;Parent=Msa0693210;Name=Msa0693210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=222|1|1|1|0.75|1|5|329|220
chr4_4 exon 62096055 62096524 62096055 ID=Msa0693210-mRNA-1:exon:17308;Parent=Msa0693210-mRNA-1
chr4_4 exon 62096779 62096841 62096779 ID=Msa0693210-mRNA-1:exon:17307;Parent=Msa0693210-mRNA-1
chr4_4 exon 62101238 62101358 62101238 ID=Msa0693210-mRNA-1:exon:17306;Parent=Msa0693210-mRNA-1
chr4_4 exon 62101460 62101601 62101460 ID=Msa0693210-mRNA-1:exon:17305;Parent=Msa0693210-mRNA-1
chr4_4 exon 62101879 62102296 62101879 ID=Msa0693210-mRNA-1:exon:17304;Parent=Msa0693210-mRNA-1
chr4_4 five_prime_UTR 62102075 62102296 62102075 ID=Msa0693210-mRNA-1:five_prime_utr;Parent=Msa0693210-mRNA-1
chr4_4 CDS 62101879 62102074 62101879 ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4 CDS 62101460 62101601 62101460 ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4 CDS 62101238 62101358 62101238 ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4 CDS 62096779 62096841 62096779 ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4 CDS 62096384 62096524 62096384 ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4 three_prime_UTR 62096055 62096383 62096055 ID=Msa0693210-mRNA-1:three_prime_utr;Parent=Msa0693210-mRNA-1
Gene Sequence

>Msa0693210

ATGGGACAGAACCAAAAATCTCTGATCTACGCTTTCGTTTCTCGCGGAAGCGTGATTCTCTCTGAATACACCGAATTCAGCGGAAACTTCAACTCCATCGCTTTTCAATGCCTTCAGAAGCTTCCAGCTTCTAACAACAAATTCACTTACAATTGTGATGGTCACACCTTCAATTACCTCGTCGATAATGGCTACACGTATTGTGTTGTTGCGGATGAAACGGTTGGAAGACAAGTGCCGGTGGCTTTTCTGGAACGTGTGAAGGATGATTTTGTTGCGAAATATGGTGGTGGGAAGGCGTCTACAGCTGCACCTAACAGCTTGAATAAGGAATTTGGGCCAAAATTGAAGGAACATATGCAGTATTGTGTTGATCACCCGGAGGAGGTGAGTAAGCTTGCTAAGGTGAAGGCTCAGGTGTCTGAAGTGAAAGGTGTCATGATGGAGAATATTGAAAAGGTCCTGGACAGGGGGGAAAAGATAGAGCTTTTGGTTGACAAGACTGAGAACCTTCATCACCAGGCACAAGACTTCAGGAACTCAGGGACCAAAATCCGCAGAAAAATGTGGCTGCAAAATATGAAGATAAAGCTGATTGTATTGGCAATTTTGATAGCTCTGATCCTCATAATTGTCCTCCCAATCGTTCTTAAGAATAAATAA

Protein sequence

>Msa0693210

MGQNQKSLIYAFVSRGSVILSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADETVGRQVPVAFLERVKDDFVAKYGGGKASTAAPNSLNKEFGPKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLAILIALILIIVLPIVLKNK*