AlfalfaGEDB | Msa0693210

M. sativa cultivar zhongmu-4 / Msa0693210

KEGG: K08511
GO: GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796
PFAM: PF13774.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693210	ACJ83853.1	100.000	220	0	0	1	220	1	220	3.76e-162	456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693210	sp\|Q9MAS5\|VA726_ARATH	79.798	198	40	0	5	202	3	200	6.85e-122	347

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693210	B7FGH4	100.000	220	0	0	1	220	1	220	1.80e-162	456

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006880	Msa0693210	0.800155	1.645884e-48	-8.615850e-47
Msa0007850	Msa0693210	0.849417	3.277869e-60	-8.615850e-47
Msa0008090	Msa0693210	0.800811	1.209889e-48	-8.615850e-47
Msa0008200	Msa0693210	0.812969	3.243604e-51	-8.615850e-47
Msa0010490	Msa0693210	0.832407	9.618948e-56	-8.615850e-47
Msa0010500	Msa0693210	0.833467	5.245860e-56	-8.615850e-47
Msa0020390	Msa0693210	0.857911	1.182076e-62	-8.615850e-47
Msa0023480	Msa0693210	0.803364	3.611665e-49	-8.615850e-47
Msa0024110	Msa0693210	0.802685	4.990062e-49	-8.615850e-47
Msa0024400	Msa0693210	0.800078	1.706367e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693210	MtrunA17_Chr4g0043521	100.000	220	0	0	1	220	1	220	3.46e-166	456
Msa0693210	MtrunA17_Chr2g0291651	90.256	195	19	0	3	197	5	199	1.15e-137	384
Msa0693210	MtrunA17_Chr1g0169861	75.355	211	52	0	5	215	53	263	1.02e-125	356
Msa0693210	MtrunA17_Chr4g0010271	79.275	193	40	0	5	197	3	195	8.40e-121	342
Msa0693210	MtrunA17_Chr7g0237561	78.756	193	41	0	5	197	3	195	1.07e-117	334
Msa0693210	MtrunA17_Chr2g0296021	66.509	212	71	0	4	215	2	213	4.83e-110	315
Msa0693210	MtrunA17_Chr7g0237521	68.394	193	61	0	5	197	3	195	1.87e-101	292
Msa0693210	MtrunA17_Chr1g0210521	55.603	232	82	3	4	216	2	231	8.99e-96	279
Msa0693210	MtrunA17_Chr1g0169851	65.753	146	35	1	59	189	8	153	1.38e-65	199
Msa0693210	MtrunA17_Chr4g0010211	79.439	107	22	0	66	172	3	109	2.33e-59	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693210	AT1G04760.2	79.798	198	40	0	5	202	3	200	6.96e-123	347
Msa0693210	AT1G04760.1	79.798	198	40	0	5	202	3	200	6.96e-123	347
Msa0693210	AT2G32670.1	81.347	193	36	0	5	197	68	260	1.12e-120	344
Msa0693210	AT2G33120.1	80.829	193	37	0	5	197	3	195	1.60e-120	341
Msa0693210	AT1G04750.1	80.311	193	38	0	5	197	3	195	1.76e-120	341
Msa0693210	AT2G33120.2	77.114	201	38	1	5	197	3	203	5.40e-117	333
Msa0693210	AT3G54300.3	57.018	228	77	2	4	211	2	228	8.12e-96	280
Msa0693210	AT3G54300.2	57.018	228	77	2	4	211	2	228	8.12e-96	280
Msa0693210	AT3G54300.1	57.018	228	77	2	4	211	2	228	8.12e-96	280
Msa0693210	AT2G33110.1	63.731	193	66	1	5	197	3	191	2.25e-88	260

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Find 73 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCACTTACAATTGTGA+TGG	0.582315	4_4:-62101914	Msa0693210:CDS
AACAGCTTGAATAAGGAATT+TGG	0.135464	4_4:-62101460	Msa0693210:CDS
AACGGTTGGAAGACAAGTGC+CGG	0.560243	4_4:-62101557	Msa0693210:CDS
AACTGTAGCCATTATCGACG+AGG	0.726012	4_4:+62101876	None:intergenic
AAGATAAATGTCTCCGAGAG+TGG	0.592683	4_4:+62096358	None:intergenic
AATTACAAAGCCCTCTATTA+AGG	0.305205	4_4:+62102268	None:intergenic
AATTACTAACCTGGTGATGA+AGG	0.503755	4_4:+62096769	None:intergenic
AATTCCTTATTCAAGCTGTT+AGG	0.425518	4_4:+62101463	None:intergenic
ACACGTTCCAGAAAAGCCAC+CGG	0.669559	4_4:+62101538	None:intergenic
ACAGCTTGAATAAGGAATTT+GGG	0.392757	4_4:-62101459	Msa0693210:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTACAAAGCCCTCTATTA+AGG	+	chr4_4:62096064-62096083	None:intergenic	30.0%
AATTCCTTATTCAAGCTGTT+AGG	+	chr4_4:62096869-62096888	None:intergenic	30.0%
AACAGCTTGAATAAGGAATT+TGG	-	chr4_4:62096869-62096888	Msa0693210:intron	30.0%
ACAGCTTGAATAAGGAATTT+GGG	-	chr4_4:62096870-62096889	Msa0693210:intron	30.0%
AACATTCGTATCGTATGTAA+AGG	+	chr4_4:62097289-62097308	None:intergenic	30.0%
TTCATACTGCACAATTCATT+AGG	-	chr4_4:62097418-62097437	Msa0693210:intron	30.0%
TTGAAAGTCATAAGAGTCTT+TGG	-	chr4_4:62097447-62097466	Msa0693210:intron	30.0%
ACACGTGTAAGAGATATATT+AGG	-	chr4_4:62097748-62097767	Msa0693210:intron	30.0%
AGTTAGCTGGTGATATATAA+TGG	+	chr4_4:62097859-62097878	None:intergenic	30.0%
CCATTATTGGGTATCAATAA+GGG	+	chr4_4:62097915-62097934	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	62096055	62102296	62096055	ID=Msa0693210;Name=Msa0693210
chr4_4	mRNA	62096055	62102296	62096055	ID=Msa0693210-mRNA-1;Parent=Msa0693210;Name=Msa0693210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=222\|1\|1\|1\|0.75\|1\|5\|329\|220
chr4_4	exon	62096055	62096524	62096055	ID=Msa0693210-mRNA-1:exon:17308;Parent=Msa0693210-mRNA-1
chr4_4	exon	62096779	62096841	62096779	ID=Msa0693210-mRNA-1:exon:17307;Parent=Msa0693210-mRNA-1
chr4_4	exon	62101238	62101358	62101238	ID=Msa0693210-mRNA-1:exon:17306;Parent=Msa0693210-mRNA-1
chr4_4	exon	62101460	62101601	62101460	ID=Msa0693210-mRNA-1:exon:17305;Parent=Msa0693210-mRNA-1
chr4_4	exon	62101879	62102296	62101879	ID=Msa0693210-mRNA-1:exon:17304;Parent=Msa0693210-mRNA-1
chr4_4	five_prime_UTR	62102075	62102296	62102075	ID=Msa0693210-mRNA-1:five_prime_utr;Parent=Msa0693210-mRNA-1
chr4_4	CDS	62101879	62102074	62101879	ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4	CDS	62101460	62101601	62101460	ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4	CDS	62101238	62101358	62101238	ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4	CDS	62096779	62096841	62096779	ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4	CDS	62096384	62096524	62096384	ID=Msa0693210-mRNA-1:cds;Parent=Msa0693210-mRNA-1
chr4_4	three_prime_UTR	62096055	62096383	62096055	ID=Msa0693210-mRNA-1:three_prime_utr;Parent=Msa0693210-mRNA-1

Gene Sequence

>Msa0693210

ATGGGACAGAACCAAAAATCTCTGATCTACGCTTTCGTTTCTCGCGGAAGCGTGATTCTCTCTGAATACACCGAATTCAGCGGAAACTTCAACTCCATCGCTTTTCAATGCCTTCAGAAGCTTCCAGCTTCTAACAACAAATTCACTTACAATTGTGATGGTCACACCTTCAATTACCTCGTCGATAATGGCTACACGTATTGTGTTGTTGCGGATGAAACGGTTGGAAGACAAGTGCCGGTGGCTTTTCTGGAACGTGTGAAGGATGATTTTGTTGCGAAATATGGTGGTGGGAAGGCGTCTACAGCTGCACCTAACAGCTTGAATAAGGAATTTGGGCCAAAATTGAAGGAACATATGCAGTATTGTGTTGATCACCCGGAGGAGGTGAGTAAGCTTGCTAAGGTGAAGGCTCAGGTGTCTGAAGTGAAAGGTGTCATGATGGAGAATATTGAAAAGGTCCTGGACAGGGGGGAAAAGATAGAGCTTTTGGTTGACAAGACTGAGAACCTTCATCACCAGGCACAAGACTTCAGGAACTCAGGGACCAAAATCCGCAGAAAAATGTGGCTGCAAAATATGAAGATAAAGCTGATTGTATTGGCAATTTTGATAGCTCTGATCCTCATAATTGTCCTCCCAATCGTTCTTAAGAATAAATAA

Protein sequence

>Msa0693210

MGQNQKSLIYAFVSRGSVILSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADETVGRQVPVAFLERVKDDFVAKYGGGKASTAAPNSLNKEFGPKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLAILIALILIIVLPIVLKNK*