AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0503510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503510 MtrunA17_Chr3g0101951 95.821 670 20 2 1 670 10 671 0.0 1326
Msa0503510 MtrunA17_Chr2g0290351 46.618 547 275 10 5 544 7 543 2.19e-156 468
Msa0503510 MtrunA17_Chr5g0423001 32.184 435 222 8 136 552 27 406 1.81e-62 217
Msa0503510 MtrunA17_Chr1g0192961 32.639 144 77 4 396 538 184 308 1.74e-15 79.0
Msa0503510 MtrunA17_Chr1g0192961 33.566 143 74 6 396 536 23 146 2.25e-14 75.9
Msa0503510 MtrunA17_Chr5g0423021 45.122 82 40 1 8 89 23 99 2.93e-15 72.4
Msa0503510 MtrunA17_Chr3g0105291 31.690 142 91 4 391 530 15 152 8.49e-15 78.6
Msa0503510 MtrunA17_Chr4g0041111 29.801 151 86 3 390 536 10 144 5.60e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503510 AT5G55600.2 47.590 664 296 11 1 648 1 628 0.0 569
Msa0503510 AT5G55600.1 47.590 664 296 11 1 648 1 628 0.0 569
Msa0503510 AT5G55600.3 47.590 664 296 11 1 648 1 628 0.0 569
Msa0503510 AT1G68580.4 30.573 314 168 8 8 305 10 289 5.87e-36 142
Msa0503510 AT1G68580.4 43.590 156 82 4 396 547 369 522 1.27e-34 139
Msa0503510 AT1G68580.2 31.353 303 180 8 8 305 10 289 1.06e-35 143
Msa0503510 AT1G68580.2 42.767 159 85 4 396 550 369 525 2.24e-35 142
Msa0503510 AT1G68580.3 42.767 159 85 4 396 550 273 429 1.47e-35 142
Msa0503510 AT1G68580.3 38.554 166 98 3 141 305 31 193 2.80e-32 132
Msa0503510 AT1G68580.5 42.767 159 85 4 396 550 323 479 2.68e-35 142
Msa0503510 AT1G68580.5 38.554 166 98 3 141 305 81 243 4.22e-32 132
Msa0503510 AT1G68580.1 43.590 156 82 4 396 547 273 426 5.75e-35 138
Msa0503510 AT1G68580.1 38.554 166 98 3 141 305 31 193 5.62e-33 132
Msa0503510 AT1G26540.1 36.242 149 67 7 396 536 14 142 1.55e-15 80.9
Msa0503510 AT1G09320.1 28.870 239 132 9 396 623 227 438 2.76e-15 79.7
Msa0503510 AT5G58610.10 32.624 141 90 4 394 530 30 169 2.96e-15 80.5
Msa0503510 AT5G58610.3 32.624 141 90 4 394 530 30 169 3.14e-15 80.5
Msa0503510 AT5G58610.8 32.624 141 90 4 394 530 30 169 3.50e-15 80.1
Msa0503510 AT5G58610.2 32.624 141 90 4 394 530 30 169 3.50e-15 80.1
Msa0503510 AT5G58610.6 30.827 133 87 4 402 530 29 160 2.74e-13 73.9
Msa0503510 AT5G58610.1 30.827 133 87 4 402 530 29 160 2.92e-13 73.9
Msa0503510 AT5G58610.9 30.827 133 87 4 402 530 29 160 2.96e-13 73.9
Msa0503510 AT5G58610.11 30.827 133 87 4 402 530 29 160 3.00e-13 73.9
Msa0503510 AT5G58610.5 30.827 133 87 4 402 530 29 160 3.02e-13 73.9
Msa0503510 AT5G58610.7 30.827 133 87 4 402 530 29 160 3.32e-13 73.9
Msa0503510 AT4G17330.2 29.167 168 106 5 380 536 1559 1724 5.72e-13 73.2
Msa0503510 AT4G17330.1 29.167 168 106 5 380 536 1559 1724 5.72e-13 73.2
Msa0503510 AT4G17330.3 29.167 168 106 5 380 536 1524 1689 5.85e-13 73.2

Find 228 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCAAAACCTCTTCTTAT+TGG 0.147611 3_4:+46780138 Msa0503510:five_prime_UTR
TTTCTGTTTCTTTCTCAATT+TGG 0.166408 3_4:+46780076 Msa0503510:five_prime_UTR
CCTCACTTTGTCTCCATCTT+TGG 0.174164 3_4:+46785099 Msa0503510:CDS
ACTTTGTGCCAAATGAATTA+AGG 0.176417 3_4:+46780588 Msa0503510:five_prime_UTR
TATTGTGGTGTTACTGAAAA+TGG 0.179192 3_4:+46785217 Msa0503510:CDS
TGCAGAAATGGGATCCAAAT+TGG 0.187564 3_4:+46781793 Msa0503510:CDS
GAGATTGCTTTCTCTGAAAA+AGG 0.226490 3_4:+46782547 Msa0503510:CDS
GGAGTGATGGGTGGTGGGAG+GGG 0.230468 3_4:+46784556 Msa0503510:CDS
AGTATGGCCTGCTCATAATT+TGG 0.230479 3_4:+46781508 Msa0503510:intron
GATAATTTGGAGTTACTCTT+TGG 0.247547 3_4:-46781700 None:intergenic
GATGTCTGAATTGGATAATT+TGG 0.248357 3_4:-46781713 None:intergenic
GAGTGATGGGTGGTGGGAGG+GGG 0.251158 3_4:+46784557 Msa0503510:CDS
AAGGGCTTCTTACCCCAATT+TGG 0.253554 3_4:-46781807 None:intergenic
TGTCTCATCTCAAGTTTATC+AGG 0.263134 3_4:-46784447 None:intergenic
AATTTACAACTTGGAAAGTT+TGG 0.277901 3_4:-46782508 None:intergenic
AATATAGTTGGGGTTATATC+AGG 0.280263 3_4:-46785052 None:intergenic
ACTCAAAACCTCTTCTTATT+GGG 0.290319 3_4:+46780139 Msa0503510:five_prime_UTR
CTGTGCTTTAGGCAATTAAA+AGG 0.291113 3_4:+46782227 Msa0503510:CDS
AATGTTCAAGTTTACTTTCC+TGG 0.293141 3_4:+46784612 Msa0503510:CDS
CCATTATGTTGCTTATTTAG+AGG 0.294198 3_4:+46781968 Msa0503510:CDS
CTGAAGGAGGTTTATCATCT+TGG 0.301328 3_4:-46785249 None:intergenic
TGTTATTGCAGAGGAGTTCT+TGG 0.306744 3_4:+46780835 Msa0503510:CDS
AGTTTCTCTTCAACAATATC+AGG 0.307576 3_4:-46785190 None:intergenic
ATCTAGACCCTTAATTCATT+TGG 0.313661 3_4:-46780596 None:intergenic
TTTCCTAGGTAGCTGTTCTT+AGG 0.315371 3_4:+46780497 Msa0503510:intron
GTGGAGTGATGGGTGGTGGG+AGG 0.316668 3_4:+46784554 Msa0503510:CDS
CTTTGTGCCAAATGAATTAA+GGG 0.327961 3_4:+46780589 Msa0503510:five_prime_UTR
ATAGGTGAGAATCAACAAAA+TGG 0.328675 3_4:-46780111 None:intergenic
CATGGTGGAGTGATGGGTGG+TGG 0.333280 3_4:+46784550 Msa0503510:CDS
GTATCCGAGGCTGCTGGTTC+AGG 0.342948 3_4:+46782642 Msa0503510:CDS
CATCTTGAACATCATCATAT+TGG 0.348306 3_4:-46782703 None:intergenic
TTTCCGAGGCTTGTGAGTTT+AGG 0.354545 3_4:+46780281 Msa0503510:five_prime_UTR
CACAGGAGAAGATGAAGATT+TGG 0.355505 3_4:+46782364 Msa0503510:CDS
TGGAGTGATGGGTGGTGGGA+GGG 0.358047 3_4:+46784555 Msa0503510:CDS
CTAATATCAGTTAATATAGT+TGG 0.361422 3_4:-46785064 None:intergenic
CTCAAAATCACAGTACAATA+AGG 0.361762 3_4:-46780405 None:intergenic
GCAGAAATGGGATCCAAATT+GGG 0.363178 3_4:+46781794 Msa0503510:CDS
GAGGGCGTTGAGTGAGAGGT+TGG 0.363686 3_4:-46779996 None:intergenic
AAAGTTTGGTATCCCATCAT+TGG 0.367954 3_4:-46782494 None:intergenic
ACAGAATACATCTGTGCTTT+AGG 0.372094 3_4:+46782216 Msa0503510:CDS
TATCCAATTCAGACATCGTT+TGG 0.378163 3_4:+46781719 Msa0503510:CDS
TATAGTTCACTATTACCTTA+AGG 0.379420 3_4:+46780748 Msa0503510:CDS
TGACCAAACGATGTCTGAAT+TGG 0.380608 3_4:-46781722 None:intergenic
TAATATCAGTTAATATAGTT+GGG 0.382595 3_4:-46785063 None:intergenic
ATTGTGGTGTTACTGAAAAT+GGG 0.383755 3_4:+46785218 Msa0503510:CDS
AAGGGGTTAGGAAGTTGATT+AGG 0.389626 3_4:+46782465 Msa0503510:CDS
CGGCACGTGGGTTAATATAA+AGG 0.391397 3_4:+46785024 Msa0503510:CDS
CATGATGTGTGTATACTATA+AGG 0.401604 3_4:+46780560 Msa0503510:five_prime_UTR
AGGACATGTATGTTTAGTTA+AGG 0.402903 3_4:+46780380 Msa0503510:five_prime_UTR
CGCAGTTTGCTTAAGTCAAA+GGG 0.405480 3_4:-46782263 None:intergenic
CCTCTAAATAAGCAACATAA+TGG 0.408473 3_4:-46781968 None:intergenic
GAGTCGTTTCTTGCAGTTGT+TGG 0.417788 3_4:+46780782 Msa0503510:CDS
GAGGAGTTCTTGGAAATTTG+TGG 0.418318 3_4:+46780845 Msa0503510:CDS
CTAACGGTCGAGAAGGGGTT+AGG 0.422030 3_4:+46782453 Msa0503510:CDS
ACTTAAGAATATCTAGAGAT+TGG 0.424417 3_4:+46784996 Msa0503510:CDS
GTGTAAAAGTGTAGAACTAA+TGG 0.424590 3_4:+46785405 Msa0503510:CDS
CACCCTTGACTTCCTGATTG+TGG 0.427838 3_4:-46782043 None:intergenic
GAGTGGAAGAGTGGAGAAAG+AGG 0.429898 3_4:-46780015 None:intergenic
GAATCAACAAAATGGGCAAA+AGG 0.434817 3_4:-46780103 None:intergenic
GAAAGAGGGCGTTGAGTGAG+AGG 0.436369 3_4:-46780000 None:intergenic
TAGAGGATATGTATGAAGAT+AGG 0.436420 3_4:+46781985 Msa0503510:CDS
GGATATGTATGAAGATAGGA+GGG 0.438556 3_4:+46781989 Msa0503510:CDS
TGTTCTTCAAGAGGTGGAGC+TGG 0.438624 3_4:-46784492 None:intergenic
GATGACAAAAGCTTTATAAT+CGG 0.440048 3_4:-46785660 None:intergenic
AACCTGGCCGGTCGACCATC+AGG 0.441895 3_4:+46784469 Msa0503510:CDS
GCCTTGCATAATTTACAACT+TGG 0.442585 3_4:-46782517 None:intergenic
CATCTCAAGTTTATCAGGCT+TGG 0.443426 3_4:-46784442 None:intergenic
GTTCTTGGAAATTTGTGGAA+TGG 0.443777 3_4:+46780850 Msa0503510:CDS
ATCAGTGCAGAGTGTGTTGA+TGG 0.446027 3_4:+46782125 Msa0503510:CDS
ACTCCCCAGCAGAATCCTTA+AGG 0.447365 3_4:-46780763 None:intergenic
GAAGATGAAGATTTGGATGT+TGG 0.448739 3_4:+46782371 Msa0503510:CDS
CTAGAAGAGAGGTGGTTGAT+TGG 0.452451 3_4:+46780900 Msa0503510:CDS
AAATTCCACCTGGTTTCAAA+TGG 0.455217 3_4:+46780873 Msa0503510:CDS
CATCTTCAATATCACCAACT+TGG 0.455980 3_4:-46785282 None:intergenic
TGCTGAGAGACTCGGGGTTG+TGG 0.458899 3_4:-46782334 None:intergenic
CTTCCCTCTGCAACTCTCCA+TGG 0.460713 3_4:+46779908 Msa0503510:five_prime_UTR
CTTAGCACTTCTACTCCTCT+TGG 0.464617 3_4:-46782414 None:intergenic
ATGGTGGAGTGATGGGTGGT+GGG 0.468229 3_4:+46784551 Msa0503510:CDS
AAAGTAGGTGGGGTTGAGAG+TGG 0.469386 3_4:-46780032 None:intergenic
AATGAATTAAGGGTCTAGAT+TGG 0.470048 3_4:+46780599 Msa0503510:five_prime_UTR
TGGGGTTGAGAGTGGAAGAG+TGG 0.472987 3_4:-46780024 None:intergenic
GGCCTGATGGTCGACCGGCC+AGG 0.474559 3_4:-46784471 None:intergenic
AATTCAGACATCGTTTGGTC+AGG 0.475598 3_4:+46781724 Msa0503510:CDS
GAGGCTGTTGCTGAGAGACT+CGG 0.480968 3_4:-46782342 None:intergenic
CGTGGATGAGTATTTCGTAC+TGG 0.483597 3_4:-46782071 None:intergenic
TATTACCTTAAGGATTCTGC+TGG 0.485228 3_4:+46780758 Msa0503510:CDS
ATAGCGATGCAAAGGTGATT+CGG 0.485856 3_4:+46785368 Msa0503510:CDS
AGGCTGTTGCTGAGAGACTC+GGG 0.485900 3_4:-46782341 None:intergenic
AGGATATGTATGAAGATAGG+AGG 0.487802 3_4:+46781988 Msa0503510:CDS
CAAGAGGAGTAGAAGTGCTA+AGG 0.492686 3_4:+46782415 Msa0503510:CDS
GGCTTGGCCAACTTAAAAGC+AGG 0.493219 3_4:-46784426 None:intergenic
ACGCAGTTTGCTTAAGTCAA+AGG 0.494480 3_4:-46782264 None:intergenic
CTTGTCATCAACCTTGTATG+TGG 0.496161 3_4:-46782594 None:intergenic
GGCACCAAGGTTTCAAATTG+CGG 0.497650 3_4:-46785639 None:intergenic
AGAGAAAGCAATCTCCTATC+CGG 0.497849 3_4:-46782539 None:intergenic
GTCGATGCATGGTGGAGTGA+TGG 0.498558 3_4:+46784543 Msa0503510:CDS
TTTGTTATATTTCATTTGGA+AGG 0.498760 3_4:+46780360 Msa0503510:five_prime_UTR
AAGGTGGTTTCACCACAATC+AGG 0.498870 3_4:+46782031 Msa0503510:CDS
CTAGCTCATAAGATCGCAAA+TGG 0.499196 3_4:+46781533 Msa0503510:CDS
GCAGATGTGCATCCAATGTA+GGG 0.499364 3_4:-46779886 None:intergenic
GATTAGGAGTAATCCAATGA+TGG 0.500360 3_4:+46782481 Msa0503510:CDS
TCTGATCTGATTGTAGACAT+AGG 0.501439 3_4:+46780202 Msa0503510:five_prime_UTR
TAGGTGAGAATCAACAAAAT+GGG 0.501788 3_4:-46780110 None:intergenic
TAATGTAAATATTAGTTACA+AGG 0.504739 3_4:+46785739 Msa0503510:three_prime_UTR
CAAGAGTTGATTGCCGAGGT+TGG 0.506135 3_4:+46784513 Msa0503510:CDS
AATCAACAAAATGGGCAAAA+GGG 0.506948 3_4:-46780102 None:intergenic
TGCTGAGAACCTTCGTATTG+TGG 0.507697 3_4:-46785607 None:intergenic
GGTTTATTAGACTTCTCAGC+AGG 0.507837 3_4:-46785169 None:intergenic
TCTCTCAGCAACAGCCTCAC+AGG 0.508253 3_4:+46782347 Msa0503510:CDS
GCAACCGCAATTTGAAACCT+TGG 0.509016 3_4:+46785635 Msa0503510:three_prime_UTR
AGTCTTCTAACGGTCGAGAA+GGG 0.510609 3_4:+46782447 Msa0503510:CDS
TTGGAACCGCCGTCGATGCA+TGG 0.511987 3_4:+46784532 Msa0503510:CDS
CAACATCATATGTTTATGAA+TGG 0.512705 3_4:-46785458 None:intergenic
AACTCTTGTTCTTCAAGAGG+TGG 0.514625 3_4:-46784498 None:intergenic
AAATATTGAGTAAAGTAGGT+GGG 0.515475 3_4:-46780043 None:intergenic
AGTGGAAGAGTGGAGAAAGA+GGG 0.516101 3_4:-46780014 None:intergenic
CTAGATCTCCATTTGAAACC+AGG 0.519075 3_4:-46780881 None:intergenic
TAAATTATGCAAGGCCGGAT+AGG 0.519189 3_4:+46782525 Msa0503510:CDS
TTGGTTTGATCCCACATACA+AGG 0.520051 3_4:+46782583 Msa0503510:CDS
GACCTGCCGCAGTCTTAACT+CGG 0.521481 3_4:+46782147 Msa0503510:CDS
AGAAGAAGAAGAAAGAGGAT+AGG 0.525033 3_4:-46779940 None:intergenic
TATTAGTTACAAGGGATATG+TGG 0.525969 3_4:+46785748 Msa0503510:three_prime_UTR
TACACCTGAACCAGCAGCCT+CGG 0.528435 3_4:-46782646 None:intergenic
GAGCTGGCCTGATGGTCGAC+CGG 0.528619 3_4:-46784476 None:intergenic
TCCCGAGTTAAGACTGCGGC+AGG 0.529171 3_4:-46782149 None:intergenic
AGCAAAATATTGAGTAAAGT+AGG 0.529447 3_4:-46780047 None:intergenic
GCAAATGACAGTACATAAGA+AGG 0.532487 3_4:+46784973 Msa0503510:CDS
ATGTATTCTGTCTGTTGAAG+AGG 0.534662 3_4:-46782204 None:intergenic
AAAAGGTTGATTGTCAACCT+TGG 0.536017 3_4:+46782564 Msa0503510:CDS
GAGATTGGTTAGGCGGCACG+TGG 0.538949 3_4:+46785011 Msa0503510:CDS
TCGATGCATGGTGGAGTGAT+GGG 0.539124 3_4:+46784544 Msa0503510:CDS
ATCGACGGCGGTTCCAACCT+CGG 0.539976 3_4:-46784526 None:intergenic
TTCTTAGGTTTGTGTAACTG+AGG 0.540787 3_4:+46780512 Msa0503510:five_prime_UTR
TCCAAGTTGTAAATTATGCA+AGG 0.541812 3_4:+46782516 Msa0503510:CDS
GTTCAAGATGAAGATGGAAG+TGG 0.543374 3_4:+46782716 Msa0503510:CDS
AGCAGATGTGCATCCAATGT+AGG 0.543554 3_4:-46779887 None:intergenic
AGAAGTTAGTGCACGAATGG+TGG 0.544357 3_4:+46781565 Msa0503510:CDS
TGTATTCTGTCTGTTGAAGA+GGG 0.546274 3_4:-46782203 None:intergenic
GATGATGTTCAAGATGAAGA+TGG 0.547654 3_4:+46782710 Msa0503510:CDS
ATCTTCAATATCACCAACTT+GGG 0.547805 3_4:-46785281 None:intergenic
GTTCAGGTGTACAATTGTAC+AGG 0.551822 3_4:+46782658 Msa0503510:CDS
AAGAGGAGTAGAAGTGCTAA+GGG 0.554787 3_4:+46782416 Msa0503510:CDS
CAGTGTTAGAGATCTTTGAA+TGG 0.555292 3_4:+46785553 Msa0503510:three_prime_UTR
AGTTGTAAATTATGCAAGGC+CGG 0.557828 3_4:+46782520 Msa0503510:CDS
CAGTCTTCTAACGGTCGAGA+AGG 0.558109 3_4:+46782446 Msa0503510:CDS
TCAACACTGTACATCTATGA+AGG 0.559572 3_4:-46785800 None:intergenic
ATTACCTTAAGGATTCTGCT+GGG 0.559779 3_4:+46780759 Msa0503510:CDS
ATCAAGTGCATATATAGTGT+TGG 0.560374 3_4:+46780643 Msa0503510:five_prime_UTR
TGCACGAATGGTGGATGACA+AGG 0.561322 3_4:+46781574 Msa0503510:CDS
ATCAACTCTTGTTCTTCAAG+AGG 0.561430 3_4:-46784501 None:intergenic
AGAATATCTAGAGATTGGTT+AGG 0.562164 3_4:+46785001 Msa0503510:CDS
TCACAAGCCTCGGAAAAGAC+AGG 0.564426 3_4:-46780274 None:intergenic
AAGAGGTGGAGCTGGCCTGA+TGG 0.565217 3_4:-46784484 None:intergenic
TCACCACAATCAGGAAGTCA+AGG 0.566128 3_4:+46782040 Msa0503510:CDS
ATCACTCCACCATGCATCGA+CGG 0.566290 3_4:-46784541 None:intergenic
TCACCTAAACTCACAAGCCT+CGG 0.566918 3_4:-46780284 None:intergenic
CAAGGTTGATGACAAGATAG+AGG 0.568710 3_4:+46782601 Msa0503510:CDS
CCAAAGATGGAGACAAAGTG+AGG 0.574576 3_4:-46785099 None:intergenic
GCTAGTGCCAAATTATGAGC+AGG 0.576048 3_4:-46781515 None:intergenic
CAAAGAAGTTAGTGCACGAA+TGG 0.576933 3_4:+46781562 Msa0503510:CDS
AATGTAAATATTAGTTACAA+GGG 0.577147 3_4:+46785740 Msa0503510:three_prime_UTR
GTCTTCTAACGGTCGAGAAG+GGG 0.578103 3_4:+46782448 Msa0503510:CDS
ATTAGGAGTAATCCAATGAT+GGG 0.578224 3_4:+46782482 Msa0503510:CDS
TAATGAGAATAGCGATGCAA+AGG 0.580442 3_4:+46785360 Msa0503510:CDS
AAAATATTGAGTAAAGTAGG+TGG 0.587215 3_4:-46780044 None:intergenic
GTTGGTGATATTGAAGATGA+TGG 0.587520 3_4:+46785286 Msa0503510:CDS
CAGAAATGGGATCCAAATTG+GGG 0.587938 3_4:+46781795 Msa0503510:CDS
AGGATAGGTTGAAATTGCCA+TGG 0.593296 3_4:-46779925 None:intergenic
GTACAATTGTACAGGTAGCT+CGG 0.594102 3_4:+46782666 Msa0503510:CDS
GGTTCTCCTCAGTCTTCTAA+CGG 0.596785 3_4:+46782437 Msa0503510:CDS
AATATCAGTTAATATAGTTG+GGG 0.597439 3_4:-46785062 None:intergenic
ATATGTATGAAGATAGGAGG+GGG 0.597580 3_4:+46781991 Msa0503510:CDS
AATATTGAGTAAAGTAGGTG+GGG 0.598781 3_4:-46780042 None:intergenic
GAGGTACTCTGTCAAGATAG+TGG 0.599825 3_4:+46782620 Msa0503510:CDS
ATAGTGGTATCCGAGGCTGC+TGG 0.600674 3_4:+46782636 Msa0503510:CDS
TTGTGGTGTTACTGAAAATG+GGG 0.601376 3_4:+46785219 Msa0503510:CDS
ACGTGCAAGGAAGAAAGAGC+TGG 0.601552 3_4:-46782302 None:intergenic
GAAGAGAAACTTGTATATTG+TGG 0.603101 3_4:+46785202 Msa0503510:CDS
TTGTCATCAACCTTGTATGT+GGG 0.607168 3_4:-46782593 None:intergenic
TCGTTTGGTCAGGACTTGCG+TGG 0.610971 3_4:+46781734 Msa0503510:CDS
GACAAGGACAACAGTGAGAG+TGG 0.610991 3_4:+46785319 Msa0503510:CDS
TATTCTGTCTGTTGAAGAGG+GGG 0.611735 3_4:-46782201 None:intergenic
TTGAGATGAGACAACCTGGC+CGG 0.611994 3_4:+46784457 Msa0503510:CDS
TGTGGAATGGAAATTCCACC+TGG 0.612194 3_4:+46780863 Msa0503510:CDS
GTGGATAGTATCAACGTGCA+AGG 0.618780 3_4:-46782315 None:intergenic
AGATGGAAGTGGAAATCTTG+AGG 0.619674 3_4:+46782727 Msa0503510:CDS
AGATGTGCATCCAATGTAGG+GGG 0.629878 3_4:-46779884 None:intergenic
TTGCAGTTGTTGGCACCGAG+AGG 0.631113 3_4:+46780792 Msa0503510:CDS
ATGCATGGTGGAGTGATGGG+TGG 0.632475 3_4:+46784547 Msa0503510:CDS
ATATCTAGAGATTGGTTAGG+CGG 0.637464 3_4:+46785004 Msa0503510:CDS
AAGCTTTATAATCGGCACCA+AGG 0.638267 3_4:-46785652 None:intergenic
CATGTGTCTAACACTCCTCT+CGG 0.638599 3_4:-46780807 None:intergenic
TTACCTTAAGGATTCTGCTG+GGG 0.639280 3_4:+46780760 Msa0503510:CDS
ATTGCCCATGACGAAAACAA+AGG 0.639287 3_4:-46781937 None:intergenic
TCAGGACTTGCGTGGACATG+TGG 0.639982 3_4:+46781742 Msa0503510:CDS
AATCTTCATCTTCTCCTGTG+AGG 0.640822 3_4:-46782361 None:intergenic
AAACTTGAGATGAGACAACC+TGG 0.645947 3_4:+46784453 Msa0503510:CDS
CAGATGTGCATCCAATGTAG+GGG 0.646369 3_4:-46779885 None:intergenic
ACCTGCCGCAGTCTTAACTC+GGG 0.646835 3_4:+46782148 Msa0503510:CDS
GAACCGCCGTCGATGCATGG+TGG 0.651144 3_4:+46784535 Msa0503510:CDS
GCTTGGCCAACTTAAAAGCA+GGG 0.652630 3_4:-46784425 None:intergenic
ATGGAGATCTAGAAGAGAGG+TGG 0.652848 3_4:+46780892 Msa0503510:CDS
CACCACAATCAGGAAGTCAA+GGG 0.653000 3_4:+46782041 Msa0503510:CDS
GATATGTATGAAGATAGGAG+GGG 0.653074 3_4:+46781990 Msa0503510:CDS
TTGCCATGGAGAGTTGCAGA+GGG 0.656610 3_4:-46779911 None:intergenic
TGGTAAAATGCAAAGAAACA+CGG 0.658146 3_4:-46785587 None:intergenic
CAAATGGAGATCTAGAAGAG+AGG 0.658480 3_4:+46780889 Msa0503510:CDS
GATGTGATGAAAACTTCTCG+TGG 0.660703 3_4:-46782089 None:intergenic
ATGCAAAGCGAGGAGCCAAG+AGG 0.661506 3_4:+46782399 Msa0503510:CDS
GGCTGTTGCTGAGAGACTCG+GGG 0.661927 3_4:-46782340 None:intergenic
GATCTCCATTTGAAACCAGG+TGG 0.662375 3_4:-46780878 None:intergenic
AGAACAAGAGTTGATTGCCG+AGG 0.667261 3_4:+46784509 Msa0503510:CDS
GTATTCTGTCTGTTGAAGAG+GGG 0.671319 3_4:-46782202 None:intergenic
GGTAATAGTGAACTATACGA+TGG 0.677069 3_4:-46780742 None:intergenic
CATGTGCTATGTTATTGCAG+AGG 0.677836 3_4:+46780826 Msa0503510:CDS
ATTGCCATGGAGAGTTGCAG+AGG 0.684493 3_4:-46779912 None:intergenic
ATAACTACAATTGACAACTG+TGG 0.684835 3_4:+46784582 Msa0503510:CDS
TTGTATGTGGGATCAAACCA+AGG 0.700037 3_4:-46782581 None:intergenic
TCTCGACCGTTAGAAGACTG+AGG 0.700818 3_4:-46782443 None:intergenic
TGTCAAGATAGTGGTATCCG+AGG 0.702081 3_4:+46782629 Msa0503510:CDS
GGTGATATTGAAGATGATGG+TGG 0.703886 3_4:+46785289 Msa0503510:CDS
TGATGGTGGTAACAACGACA+AGG 0.711985 3_4:+46785303 Msa0503510:CDS
AGATTGGTTAGGCGGCACGT+GGG 0.722200 3_4:+46785012 Msa0503510:CDS
GATGTGCATCCAATGTAGGG+GGG 0.722957 3_4:-46779883 None:intergenic
ACTCCACCATGCATCGACGG+CGG 0.726898 3_4:-46784538 None:intergenic
GTTGGTGATGATGCAAAGCG+AGG 0.733009 3_4:+46782389 Msa0503510:CDS
TTTGACTTAAGCAAACTGCG+TGG 0.766470 3_4:+46782266 Msa0503510:CDS
GTGTTCCCGAGTTAAGACTG+CGG 0.789633 3_4:-46782153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCTCAAATATTAAAAA+GGG - chr3_4:46780332-46780351 None:intergenic 10.0%
!! AAAAATCTCAAATATTAAAA+AGG - chr3_4:46780333-46780352 None:intergenic 10.0%
!!! TATTTTTGTTATATTTCATT+TGG + chr3_4:46780356-46780375 Msa0503510:five_prime_UTR 10.0%
!! ATTAAAAAATTGAATTCAAA+AGG - chr3_4:46784378-46784397 None:intergenic 10.0%
!! AAAATAATTCTATTACAAAT+TGG - chr3_4:46784933-46784952 None:intergenic 10.0%
!!! TTTGTAATAGAATTATTTTT+TGG + chr3_4:46784934-46784953 Msa0503510:intron 10.0%
!! ATGATCAAAACAATTATATA+TGG - chr3_4:46781015-46781034 None:intergenic 15.0%
!!! AAGTAAATTTATCAGTTTTT+TGG + chr3_4:46781473-46781492 Msa0503510:intron 15.0%
!! TAAGGAAAAATAAACAAAAA+GGG - chr3_4:46781605-46781624 None:intergenic 15.0%
!! ATAAGGAAAAATAAACAAAA+AGG - chr3_4:46781606-46781625 None:intergenic 15.0%
!! CAATGAAAATATAGAAAAAT+AGG - chr3_4:46783255-46783274 None:intergenic 15.0%
!!! CATTTTATACTATAAATTGA+TGG + chr3_4:46783424-46783443 Msa0503510:intron 15.0%
!! TAAATAACAGTAGATTATTT+AGG + chr3_4:46784121-46784140 Msa0503510:intron 15.0%
!!! TTTTTCTAGATATATTGTTA+GGG - chr3_4:46784271-46784290 None:intergenic 15.0%
!!! ATTTTTCTAGATATATTGTT+AGG - chr3_4:46784272-46784291 None:intergenic 15.0%
!! TAACAATATATCTAGAAAAA+TGG + chr3_4:46784271-46784290 Msa0503510:intron 15.0%
!!! TGAATATTTTGTTTTACATT+GGG - chr3_4:46784307-46784326 None:intergenic 15.0%
!!! TTGAATATTTTGTTTTACAT+TGG - chr3_4:46784308-46784327 None:intergenic 15.0%
!! TAATATCAGTTAATATAGTT+GGG - chr3_4:46785066-46785085 None:intergenic 15.0%
!! TAATGTAAATATTAGTTACA+AGG + chr3_4:46785739-46785758 Msa0503510:three_prime_UTR 15.0%
!! AATGTAAATATTAGTTACAA+GGG + chr3_4:46785740-46785759 Msa0503510:three_prime_UTR 15.0%
!! TCAAATATTAAAAAGGGATT+TGG - chr3_4:46780326-46780345 None:intergenic 20.0%
!!! TTTGTTATATTTCATTTGGA+AGG + chr3_4:46780360-46780379 Msa0503510:five_prime_UTR 20.0%
!! TATAAAATGATGTCAAATAG+AGG - chr3_4:46781108-46781127 None:intergenic 20.0%
!! TAATAGAGAAAATGAGAATA+AGG - chr3_4:46781623-46781642 None:intergenic 20.0%
!! TTTCACATTTGCATAAATAA+TGG + chr3_4:46782807-46782826 Msa0503510:intron 20.0%
!! TTCACATTTGCATAAATAAT+GGG + chr3_4:46782808-46782827 Msa0503510:intron 20.0%
!! ATCAAGATAAAACCTTAAAT+AGG - chr3_4:46782838-46782857 None:intergenic 20.0%
!!! TTTACTTTGACTTAAACTTT+GGG - chr3_4:46783398-46783417 None:intergenic 20.0%
!!! TTTTACTTTGACTTAAACTT+TGG - chr3_4:46783399-46783418 None:intergenic 20.0%
!! ATTTAGCATAGAAAATGTAT+AGG + chr3_4:46783530-46783549 Msa0503510:intron 20.0%
!! AACTGATAAATATTCTATGT+TGG + chr3_4:46783580-46783599 Msa0503510:intron 20.0%
!!! CTTTTCTATTGTTTCTAAAT+AGG + chr3_4:46783663-46783682 Msa0503510:intron 20.0%
!!! TTTATAGTGCATCTTTTTTT+TGG + chr3_4:46783762-46783781 Msa0503510:intron 20.0%
!!! ATTTCGAGTAAAATATGATA+TGG + chr3_4:46784238-46784257 Msa0503510:intron 20.0%
!!! TTTTCTAGATATATTGTTAG+GGG - chr3_4:46784270-46784289 None:intergenic 20.0%
!!! TTAATCTTTTTATCCAAACA+GGG - chr3_4:46784672-46784691 None:intergenic 20.0%
!!! ATTAATCTTTTTATCCAAAC+AGG - chr3_4:46784673-46784692 None:intergenic 20.0%
!! ATTATGCTGAAAATAGTTTA+TGG + chr3_4:46784807-46784826 Msa0503510:intron 20.0%
!!! TAGAATTATTTTTTGGTATC+AGG + chr3_4:46784941-46784960 Msa0503510:intron 20.0%
!! AATATCAGTTAATATAGTTG+GGG - chr3_4:46785065-46785084 None:intergenic 20.0%
!! CTAATATCAGTTAATATAGT+TGG - chr3_4:46785067-46785086 None:intergenic 20.0%
! AAATATTGAGTAAAGTAGGT+GGG - chr3_4:46780046-46780065 None:intergenic 25.0%
! AAAATATTGAGTAAAGTAGG+TGG - chr3_4:46780047-46780066 None:intergenic 25.0%
! AGCAAAATATTGAGTAAAGT+AGG - chr3_4:46780050-46780069 None:intergenic 25.0%
!! TTTCTGTTTCTTTCTCAATT+TGG + chr3_4:46780076-46780095 Msa0503510:five_prime_UTR 25.0%
!! TTAGGTTTTTGTATTTTCCT+AGG + chr3_4:46780483-46780502 Msa0503510:intron 25.0%
! GATTTCAAAAAAGTGGTATA+GGG - chr3_4:46780626-46780645 None:intergenic 25.0%
! TGATTTCAAAAAAGTGGTAT+AGG - chr3_4:46780627-46780646 None:intergenic 25.0%
! TATAGTTCACTATTACCTTA+AGG + chr3_4:46780748-46780767 Msa0503510:CDS 25.0%
! TTATACTAAATAGCGTATTG+TGG + chr3_4:46781123-46781142 Msa0503510:intron 25.0%
! AATTATTGTTCAACCTACAA+TGG - chr3_4:46781268-46781287 None:intergenic 25.0%
! AAACAGCAACAATATTGATA+TGG + chr3_4:46781390-46781409 Msa0503510:intron 25.0%
! TTGGATTTCAAATTACAGTA+TGG + chr3_4:46781492-46781511 Msa0503510:intron 25.0%
! TATTCATCAGAAAAAGTAGA+TGG - chr3_4:46781646-46781665 None:intergenic 25.0%
!!! TCTCTTGATTTTTAGTTCAA+GGG - chr3_4:46781828-46781847 None:intergenic 25.0%
!!! TTCTCTTGATTTTTAGTTCA+AGG - chr3_4:46781829-46781848 None:intergenic 25.0%
! AATTTACAACTTGGAAAGTT+TGG - chr3_4:46782511-46782530 None:intergenic 25.0%
!!! TTTCATTTTTTGTCAGTACT+TGG + chr3_4:46782777-46782796 Msa0503510:intron 25.0%
!! GTTTTATCTTGATAGAAGAA+CGG + chr3_4:46782845-46782864 Msa0503510:intron 25.0%
!!! TATTCACTGTTTTTTCTGTA+TGG + chr3_4:46783073-46783092 Msa0503510:intron 25.0%
! CAACTGAAATATACTATTCT+TGG + chr3_4:46783165-46783184 Msa0503510:intron 25.0%
! AAATATACTATTCTTGGCAT+TGG + chr3_4:46783171-46783190 Msa0503510:intron 25.0%
! GAAAATTTGAAAAGTTGAGA+AGG - chr3_4:46783231-46783250 None:intergenic 25.0%
!! ACTATAAATTGATGGTAGAT+TGG + chr3_4:46783432-46783451 Msa0503510:intron 25.0%
! TCAAAACAAAATACCTTGAA+TGG + chr3_4:46783457-46783476 Msa0503510:intron 25.0%
! TTGGAAAAAAATGTAAGATG+TGG + chr3_4:46783599-46783618 Msa0503510:intron 25.0%
! GATAACGAAATACACATTTA+AGG + chr3_4:46783902-46783921 Msa0503510:intron 25.0%
!! ACACATTTAAGGTAAAAAGT+TGG + chr3_4:46783913-46783932 Msa0503510:intron 25.0%
!!! ATTCATTTTTCAAATGTAGC+TGG + chr3_4:46784188-46784207 Msa0503510:intron 25.0%
! ATTCTGACACATATTGTTAT+CGG - chr3_4:46784220-46784239 None:intergenic 25.0%
!!! AATCTTGATCTCCATTTTTT+AGG + chr3_4:46784395-46784414 Msa0503510:intron 25.0%
! AAGCTATCTTAGAAAGTTAA+TGG + chr3_4:46784783-46784802 Msa0503510:intron 25.0%
! AGCTATCTTAGAAAGTTAAT+GGG + chr3_4:46784784-46784803 Msa0503510:intron 25.0%
! ATTCTATTACAAATTGGAGA+AGG - chr3_4:46784927-46784946 None:intergenic 25.0%
! ACTTAAGAATATCTAGAGAT+TGG + chr3_4:46784996-46785015 Msa0503510:CDS 25.0%
! CAACATCATATGTTTATGAA+TGG - chr3_4:46785461-46785480 None:intergenic 25.0%
!! GATGACAAAAGCTTTATAAT+CGG - chr3_4:46785663-46785682 None:intergenic 25.0%
!!! TGTTTTTTTCTTCCATTAGT+AGG + chr3_4:46785841-46785860 Msa0503510:intron 25.0%
AATATTGAGTAAAGTAGGTG+GGG - chr3_4:46780045-46780064 None:intergenic 30.0%
AATCAACAAAATGGGCAAAA+GGG - chr3_4:46780105-46780124 None:intergenic 30.0%
TAGGTGAGAATCAACAAAAT+GGG - chr3_4:46780113-46780132 None:intergenic 30.0%
ATAGGTGAGAATCAACAAAA+TGG - chr3_4:46780114-46780133 None:intergenic 30.0%
ACTCAAAACCTCTTCTTATT+GGG + chr3_4:46780139-46780158 Msa0503510:five_prime_UTR 30.0%
TGAAAAAACCCAATAAGAAG+AGG - chr3_4:46780150-46780169 None:intergenic 30.0%
AGGACATGTATGTTTAGTTA+AGG + chr3_4:46780380-46780399 Msa0503510:five_prime_UTR 30.0%
CTCAAAATCACAGTACAATA+AGG - chr3_4:46780408-46780427 None:intergenic 30.0%
! CTTATTGTACTGTGATTTTG+AGG + chr3_4:46780406-46780425 Msa0503510:five_prime_UTR 30.0%
!! TACTGTGATTTTGAGGATTT+TGG + chr3_4:46780413-46780432 Msa0503510:five_prime_UTR 30.0%
!!! TGTAACTGAGGTTTTTTAGA+GGG + chr3_4:46780524-46780543 Msa0503510:five_prime_UTR 30.0%
CATGATGTGTGTATACTATA+AGG + chr3_4:46780560-46780579 Msa0503510:five_prime_UTR 30.0%
ACTTTGTGCCAAATGAATTA+AGG + chr3_4:46780588-46780607 Msa0503510:five_prime_UTR 30.0%
CTTTGTGCCAAATGAATTAA+GGG + chr3_4:46780589-46780608 Msa0503510:five_prime_UTR 30.0%
ATCTAGACCCTTAATTCATT+TGG - chr3_4:46780599-46780618 None:intergenic 30.0%
AATGAATTAAGGGTCTAGAT+TGG + chr3_4:46780599-46780618 Msa0503510:five_prime_UTR 30.0%
TGCACTTGATTTCAAAAAAG+TGG - chr3_4:46780633-46780652 None:intergenic 30.0%
ATCAAGTGCATATATAGTGT+TGG + chr3_4:46780643-46780662 Msa0503510:five_prime_UTR 30.0%
TTGTTAAATAGCAGCAATTG+CGG - chr3_4:46781238-46781257 None:intergenic 30.0%
! GATAATTTGGAGTTACTCTT+TGG - chr3_4:46781703-46781722 None:intergenic 30.0%
GATGTCTGAATTGGATAATT+TGG - chr3_4:46781716-46781735 None:intergenic 30.0%
CCTCTAAATAAGCAACATAA+TGG - chr3_4:46781971-46781990 None:intergenic 30.0%
! CCATTATGTTGCTTATTTAG+AGG + chr3_4:46781968-46781987 Msa0503510:CDS 30.0%
TAGAGGATATGTATGAAGAT+AGG + chr3_4:46781985-46782004 Msa0503510:CDS 30.0%
AGAAAAAGGTTAAAGTAAGG+TGG + chr3_4:46782015-46782034 Msa0503510:CDS 30.0%
ATTAGGAGTAATCCAATGAT+GGG + chr3_4:46782482-46782501 Msa0503510:CDS 30.0%
TCCAAGTTGTAAATTATGCA+AGG + chr3_4:46782516-46782535 Msa0503510:CDS 30.0%
CATCTTGAACATCATCATAT+TGG - chr3_4:46782706-46782725 None:intergenic 30.0%
!! ATAATGGGTGTTCCTATTTA+AGG + chr3_4:46782823-46782842 Msa0503510:intron 30.0%
! CTGAATTCATTGATGATTGA+TGG + chr3_4:46782913-46782932 Msa0503510:intron 30.0%
ACTTTAAATAAGAGAAGCCT+TGG - chr3_4:46783040-46783059 None:intergenic 30.0%
! CTATTAGTTTAAGCTTAACG+TGG + chr3_4:46783105-46783124 Msa0503510:intron 30.0%
! CCAGATTTAATTTCCATTCA+AGG - chr3_4:46783473-46783492 None:intergenic 30.0%
CCTTGAATGGAAATTAAATC+TGG + chr3_4:46783470-46783489 Msa0503510:intron 30.0%
ACATGATATCTGTAGTTTCA+AGG + chr3_4:46783505-46783524 Msa0503510:intron 30.0%
! ATCTTTTTGTTCGAACTGAA+TGG + chr3_4:46784033-46784052 Msa0503510:intron 30.0%
ACTTCAAAGAAATGATCAAG+CGG - chr3_4:46784090-46784109 None:intergenic 30.0%
! TTTTCAAATGTAGCTGGTAA+TGG + chr3_4:46784194-46784213 Msa0503510:intron 30.0%
GAGTAATTGTTATGCATCAA+GGG - chr3_4:46784350-46784369 None:intergenic 30.0%
AGAGTAATTGTTATGCATCA+AGG - chr3_4:46784351-46784370 None:intergenic 30.0%
ATAACTACAATTGACAACTG+TGG + chr3_4:46784582-46784601 Msa0503510:CDS 30.0%
! AATGTTCAAGTTTACTTTCC+TGG + chr3_4:46784612-46784631 Msa0503510:CDS 30.0%
AAGCACTTGTGAAATTGTTT+AGG - chr3_4:46784849-46784868 None:intergenic 30.0%
GAGAAGGATGACAAAATTTA+GGG - chr3_4:46784911-46784930 None:intergenic 30.0%
! AGAATATCTAGAGATTGGTT+AGG + chr3_4:46785001-46785020 Msa0503510:CDS 30.0%
AATATAGTTGGGGTTATATC+AGG - chr3_4:46785055-46785074 None:intergenic 30.0%
AGTTTCTCTTCAACAATATC+AGG - chr3_4:46785193-46785212 None:intergenic 30.0%
GAAGAGAAACTTGTATATTG+TGG + chr3_4:46785202-46785221 Msa0503510:CDS 30.0%
!! TATTGTGGTGTTACTGAAAA+TGG + chr3_4:46785217-46785236 Msa0503510:CDS 30.0%
!! ATTGTGGTGTTACTGAAAAT+GGG + chr3_4:46785218-46785237 Msa0503510:CDS 30.0%
ATCTTCAATATCACCAACTT+GGG - chr3_4:46785284-46785303 None:intergenic 30.0%
! GTGTAAAAGTGTAGAACTAA+TGG + chr3_4:46785405-46785424 Msa0503510:CDS 30.0%
! TAGTTTTCAATTGCAAACTG+CGG + chr3_4:46785488-46785507 Msa0503510:three_prime_UTR 30.0%
TGGTAAAATGCAAAGAAACA+CGG - chr3_4:46785590-46785609 None:intergenic 30.0%
TATTAGTTACAAGGGATATG+TGG + chr3_4:46785748-46785767 Msa0503510:three_prime_UTR 30.0%
AGAAGAAGAAGAAAGAGGAT+AGG - chr3_4:46779943-46779962 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAAG+AGG - chr3_4:46779948-46779967 None:intergenic 35.0%
GAATCAACAAAATGGGCAAA+AGG - chr3_4:46780106-46780125 None:intergenic 35.0%
!!! AGAGGTTTTGAGTGGAAAAT+AGG - chr3_4:46780132-46780151 None:intergenic 35.0%
!!! CAATAAGAAGAGGTTTTGAG+TGG - chr3_4:46780140-46780159 None:intergenic 35.0%
CACTCAAAACCTCTTCTTAT+TGG + chr3_4:46780138-46780157 Msa0503510:five_prime_UTR 35.0%
!!! TATTGGGTTTTTTCAGCATC+TGG + chr3_4:46780155-46780174 Msa0503510:five_prime_UTR 35.0%
!! ATCTGGATCGGTTTTTCATA+AGG + chr3_4:46780172-46780191 Msa0503510:five_prime_UTR 35.0%
!! TCTGGATCGGTTTTTCATAA+GGG + chr3_4:46780173-46780192 Msa0503510:five_prime_UTR 35.0%
TCTGATCTGATTGTAGACAT+AGG + chr3_4:46780202-46780221 Msa0503510:five_prime_UTR 35.0%
! GACATAGGTTTTTGTAGCTT+TGG + chr3_4:46780217-46780236 Msa0503510:five_prime_UTR 35.0%
! AAGCATCTTTGTATTTTCCC+AGG + chr3_4:46780451-46780470 Msa0503510:five_prime_UTR 35.0%
TTCTTAGGTTTGTGTAACTG+AGG + chr3_4:46780512-46780531 Msa0503510:five_prime_UTR 35.0%
!!! GTGTAACTGAGGTTTTTTAG+AGG + chr3_4:46780523-46780542 Msa0503510:five_prime_UTR 35.0%
GGTAATAGTGAACTATACGA+TGG - chr3_4:46780745-46780764 None:intergenic 35.0%
TATTACCTTAAGGATTCTGC+TGG + chr3_4:46780758-46780777 Msa0503510:CDS 35.0%
ATTACCTTAAGGATTCTGCT+GGG + chr3_4:46780759-46780778 Msa0503510:CDS 35.0%
GTTCTTGGAAATTTGTGGAA+TGG + chr3_4:46780850-46780869 Msa0503510:CDS 35.0%
AAATTCCACCTGGTTTCAAA+TGG + chr3_4:46780873-46780892 Msa0503510:CDS 35.0%
TAACAACACTTGACCATTGT+AGG + chr3_4:46781252-46781271 Msa0503510:intron 35.0%
TATCCAATTCAGACATCGTT+TGG + chr3_4:46781719-46781738 Msa0503510:CDS 35.0%
!!! TATCCTGCTTTTTGCAGAAA+TGG + chr3_4:46781781-46781800 Msa0503510:CDS 35.0%
!!! ATCCTGCTTTTTGCAGAAAT+GGG + chr3_4:46781782-46781801 Msa0503510:CDS 35.0%
!!! TCAATCCTTTGTTTTCGTCA+TGG + chr3_4:46781932-46781951 Msa0503510:CDS 35.0%
!!! CAATCCTTTGTTTTCGTCAT+GGG + chr3_4:46781933-46781952 Msa0503510:CDS 35.0%
AGGATATGTATGAAGATAGG+AGG + chr3_4:46781988-46782007 Msa0503510:CDS 35.0%
GGATATGTATGAAGATAGGA+GGG + chr3_4:46781989-46782008 Msa0503510:CDS 35.0%
GATATGTATGAAGATAGGAG+GGG + chr3_4:46781990-46782009 Msa0503510:CDS 35.0%
ATATGTATGAAGATAGGAGG+GGG + chr3_4:46781991-46782010 Msa0503510:CDS 35.0%
GGCAGAAAAAGGTTAAAGTA+AGG + chr3_4:46782012-46782031 Msa0503510:CDS 35.0%
TGTATTCTGTCTGTTGAAGA+GGG - chr3_4:46782206-46782225 None:intergenic 35.0%
ATGTATTCTGTCTGTTGAAG+AGG - chr3_4:46782207-46782226 None:intergenic 35.0%
ACAGAATACATCTGTGCTTT+AGG + chr3_4:46782216-46782235 Msa0503510:CDS 35.0%
! CTGTGCTTTAGGCAATTAAA+AGG + chr3_4:46782227-46782246 Msa0503510:CDS 35.0%
GAAGATGAAGATTTGGATGT+TGG + chr3_4:46782371-46782390 Msa0503510:CDS 35.0%
GATTAGGAGTAATCCAATGA+TGG + chr3_4:46782481-46782500 Msa0503510:CDS 35.0%
AAAGTTTGGTATCCCATCAT+TGG - chr3_4:46782497-46782516 None:intergenic 35.0%
GCCTTGCATAATTTACAACT+TGG - chr3_4:46782520-46782539 None:intergenic 35.0%
AGTTGTAAATTATGCAAGGC+CGG + chr3_4:46782520-46782539 Msa0503510:CDS 35.0%
! GAGATTGCTTTCTCTGAAAA+AGG + chr3_4:46782547-46782566 Msa0503510:CDS 35.0%
! AAAAGGTTGATTGTCAACCT+TGG + chr3_4:46782564-46782583 Msa0503510:CDS 35.0%
TTGTCATCAACCTTGTATGT+GGG - chr3_4:46782596-46782615 None:intergenic 35.0%
GATGATGTTCAAGATGAAGA+TGG + chr3_4:46782710-46782729 Msa0503510:CDS 35.0%
! TATACTATTCTTGGCATTGG+CGG + chr3_4:46783174-46783193 Msa0503510:intron 35.0%
!! AAGAGTGTCTCATACATTCA+TGG - chr3_4:46783706-46783725 None:intergenic 35.0%
TATTAGAGACCAAGAATCAG+TGG - chr3_4:46783981-46784000 None:intergenic 35.0%
TCATGTAGTTTAACTGTGCT+TGG + chr3_4:46784058-46784077 Msa0503510:intron 35.0%
!!! TGATCTCCATTTTTTAGGAG+TGG + chr3_4:46784400-46784419 Msa0503510:intron 35.0%
TGTCTCATCTCAAGTTTATC+AGG - chr3_4:46784450-46784469 None:intergenic 35.0%
ATCAACTCTTGTTCTTCAAG+AGG - chr3_4:46784504-46784523 None:intergenic 35.0%
! TATCCAAACAGGGCATTATA+GGG - chr3_4:46784662-46784681 None:intergenic 35.0%
! TTATCCAAACAGGGCATTAT+AGG - chr3_4:46784663-46784682 None:intergenic 35.0%
GGAGAAGGATGACAAAATTT+AGG - chr3_4:46784912-46784931 None:intergenic 35.0%
GCAAATGACAGTACATAAGA+AGG + chr3_4:46784973-46784992 Msa0503510:CDS 35.0%
! ATATCTAGAGATTGGTTAGG+CGG + chr3_4:46785004-46785023 Msa0503510:CDS 35.0%
! TCTGCATCTTTTTCCAAAGA+TGG - chr3_4:46785115-46785134 None:intergenic 35.0%
AAAAAGATGCAGACTCAGTT+GGG + chr3_4:46785122-46785141 Msa0503510:CDS 35.0%
!! TTGTGGTGTTACTGAAAATG+GGG + chr3_4:46785219-46785238 Msa0503510:CDS 35.0%
!!! ACTTGGGTACTTTTTTCTGA+AGG - chr3_4:46785268-46785287 None:intergenic 35.0%
!! TCAGAAAAAAGTACCCAAGT+TGG + chr3_4:46785268-46785287 Msa0503510:CDS 35.0%
CATCTTCAATATCACCAACT+TGG - chr3_4:46785285-46785304 None:intergenic 35.0%
!! GTTGGTGATATTGAAGATGA+TGG + chr3_4:46785286-46785305 Msa0503510:CDS 35.0%
TAATGAGAATAGCGATGCAA+AGG + chr3_4:46785360-46785379 Msa0503510:CDS 35.0%
CAGTGTTAGAGATCTTTGAA+TGG + chr3_4:46785553-46785572 Msa0503510:three_prime_UTR 35.0%
! TGCATTTTACCACAATACGA+AGG + chr3_4:46785598-46785617 Msa0503510:three_prime_UTR 35.0%
TCAACACTGTACATCTATGA+AGG - chr3_4:46785803-46785822 None:intergenic 35.0%
TTTCTTCCATTAGTAGGTTG+TGG + chr3_4:46785847-46785866 Msa0503510:intron 35.0%
TTTCTACCACAACCTACTAA+TGG - chr3_4:46785856-46785875 None:intergenic 35.0%
! AGGATAGGTTGAAATTGCCA+TGG - chr3_4:46779928-46779947 None:intergenic 40.0%
!!! GGTTTTTTCAGCATCTGGAT+CGG + chr3_4:46780160-46780179 Msa0503510:five_prime_UTR 40.0%
AAACCTAAGAACAGCTACCT+GGG - chr3_4:46780471-46780490 None:intergenic 40.0%
AAAACCTAAGAACAGCTACC+TGG - chr3_4:46780472-46780491 None:intergenic 40.0%
TTTCCTAGGTAGCTGTTCTT+AGG + chr3_4:46780497-46780516 Msa0503510:intron 40.0%
AAACCTAAGAACAGCTACCT+AGG - chr3_4:46780471-46780490 None:intergenic 40.0%
! GATAGACGATCTGTGTTTTG+TGG + chr3_4:46780685-46780704 Msa0503510:CDS 40.0%
! ACGATCTGTGTTTTGTGGAA+TGG + chr3_4:46780690-46780709 Msa0503510:CDS 40.0%
!! CATTTTGTTTCACAAGAGCG+TGG + chr3_4:46780719-46780738 Msa0503510:CDS 40.0%
TTACCTTAAGGATTCTGCTG+GGG + chr3_4:46780760-46780779 Msa0503510:CDS 40.0%
CATGTGCTATGTTATTGCAG+AGG + chr3_4:46780826-46780845 Msa0503510:CDS 40.0%
TGTTATTGCAGAGGAGTTCT+TGG + chr3_4:46780835-46780854 Msa0503510:CDS 40.0%
GAGGAGTTCTTGGAAATTTG+TGG + chr3_4:46780845-46780864 Msa0503510:CDS 40.0%
! CTAGATCTCCATTTGAAACC+AGG - chr3_4:46780884-46780903 None:intergenic 40.0%
CAAATGGAGATCTAGAAGAG+AGG + chr3_4:46780889-46780908 Msa0503510:CDS 40.0%
AGTATGGCCTGCTCATAATT+TGG + chr3_4:46781508-46781527 Msa0503510:intron 40.0%
CTAGCTCATAAGATCGCAAA+TGG + chr3_4:46781533-46781552 Msa0503510:CDS 40.0%
CAAAGAAGTTAGTGCACGAA+TGG + chr3_4:46781562-46781581 Msa0503510:CDS 40.0%
TGACCAAACGATGTCTGAAT+TGG - chr3_4:46781725-46781744 None:intergenic 40.0%
AATTCAGACATCGTTTGGTC+AGG + chr3_4:46781724-46781743 Msa0503510:CDS 40.0%
ATCCCATTTCTGCAAAAAGC+AGG - chr3_4:46781787-46781806 None:intergenic 40.0%
TGCAGAAATGGGATCCAAAT+TGG + chr3_4:46781793-46781812 Msa0503510:CDS 40.0%
GCAGAAATGGGATCCAAATT+GGG + chr3_4:46781794-46781813 Msa0503510:CDS 40.0%
CAGAAATGGGATCCAAATTG+GGG + chr3_4:46781795-46781814 Msa0503510:CDS 40.0%
ATTGCCCATGACGAAAACAA+AGG - chr3_4:46781940-46781959 None:intergenic 40.0%
!! TTTGTTTTCGTCATGGGCAA+TGG + chr3_4:46781939-46781958 Msa0503510:CDS 40.0%
GATGTGATGAAAACTTCTCG+TGG - chr3_4:46782092-46782111 None:intergenic 40.0%
GTTGAAGAGGGGGAAAAATA+AGG - chr3_4:46782194-46782213 None:intergenic 40.0%
TATTCTGTCTGTTGAAGAGG+GGG - chr3_4:46782204-46782223 None:intergenic 40.0%
GTATTCTGTCTGTTGAAGAG+GGG - chr3_4:46782205-46782224 None:intergenic 40.0%
! CGCAGTTTGCTTAAGTCAAA+GGG - chr3_4:46782266-46782285 None:intergenic 40.0%
! ACGCAGTTTGCTTAAGTCAA+AGG - chr3_4:46782267-46782286 None:intergenic 40.0%
! TTTGACTTAAGCAAACTGCG+TGG + chr3_4:46782266-46782285 Msa0503510:CDS 40.0%
AATCTTCATCTTCTCCTGTG+AGG - chr3_4:46782364-46782383 None:intergenic 40.0%
CACAGGAGAAGATGAAGATT+TGG + chr3_4:46782364-46782383 Msa0503510:CDS 40.0%
!! AAGAGGAGTAGAAGTGCTAA+GGG + chr3_4:46782416-46782435 Msa0503510:CDS 40.0%
! AAGGGGTTAGGAAGTTGATT+AGG + chr3_4:46782465-46782484 Msa0503510:CDS 40.0%
TAAATTATGCAAGGCCGGAT+AGG + chr3_4:46782525-46782544 Msa0503510:CDS 40.0%
AGAGAAAGCAATCTCCTATC+CGG - chr3_4:46782542-46782561 None:intergenic 40.0%
TTGTATGTGGGATCAAACCA+AGG - chr3_4:46782584-46782603 None:intergenic 40.0%
! TTGGTTTGATCCCACATACA+AGG + chr3_4:46782583-46782602 Msa0503510:CDS 40.0%
CTTGTCATCAACCTTGTATG+TGG - chr3_4:46782597-46782616 None:intergenic 40.0%
!! CAAGGTTGATGACAAGATAG+AGG + chr3_4:46782601-46782620 Msa0503510:CDS 40.0%
GTTCAGGTGTACAATTGTAC+AGG + chr3_4:46782658-46782677 Msa0503510:CDS 40.0%
GTACAATTGTACAGGTAGCT+CGG + chr3_4:46782666-46782685 Msa0503510:CDS 40.0%
GTTCAAGATGAAGATGGAAG+TGG + chr3_4:46782716-46782735 Msa0503510:CDS 40.0%
AGATGGAAGTGGAAATCTTG+AGG + chr3_4:46782727-46782746 Msa0503510:CDS 40.0%
GAGGGAAAAAATTTGTGTCG+TGG - chr3_4:46782979-46782998 None:intergenic 40.0%
!!! TTTTTTCCCTCCTAGTCATG+TGG + chr3_4:46782988-46783007 Msa0503510:intron 40.0%
CTTGGTACAAGTACAACAAC+TGG - chr3_4:46783022-46783041 None:intergenic 40.0%
CAGTTGTTGTACTTGTACCA+AGG + chr3_4:46783020-46783039 Msa0503510:intron 40.0%
AACGTGGAATTTAGACATGC+TGG + chr3_4:46783121-46783140 Msa0503510:intron 40.0%
!! TCCAAGGCTTAATTTTGAGG+GGG - chr3_4:46783285-46783304 None:intergenic 40.0%
! GTCCAAGGCTTAATTTTGAG+GGG - chr3_4:46783286-46783305 None:intergenic 40.0%
! GGTCCAAGGCTTAATTTTGA+GGG - chr3_4:46783287-46783306 None:intergenic 40.0%
! TGGTCCAAGGCTTAATTTTG+AGG - chr3_4:46783288-46783307 None:intergenic 40.0%
AGTCAATGCAATATGGTCCA+AGG - chr3_4:46783301-46783320 None:intergenic 40.0%
AGGAGACAGTCAATGCAATA+TGG - chr3_4:46783308-46783327 None:intergenic 40.0%
!! CAACTTTTTCCTAGTGAGAG+AGG - chr3_4:46783328-46783347 None:intergenic 40.0%
CTCTCTCACTAGGAAAAAGT+TGG + chr3_4:46783326-46783345 Msa0503510:intron 40.0%
! AAATTTTGAACCCCCAACTC+AGG + chr3_4:46783943-46783962 Msa0503510:intron 40.0%
! AATTTTGAACCCCCAACTCA+GGG + chr3_4:46783944-46783963 Msa0503510:intron 40.0%
CTGAAATCGCTGTATAAGAC+AGG - chr3_4:46784147-46784166 None:intergenic 40.0%
AGGGATCCACTCCTAAAAAA+TGG - chr3_4:46784409-46784428 None:intergenic 40.0%
CATCTCAAGTTTATCAGGCT+TGG - chr3_4:46784445-46784464 None:intergenic 40.0%
AAACTTGAGATGAGACAACC+TGG + chr3_4:46784453-46784472 Msa0503510:CDS 40.0%
AACTCTTGTTCTTCAAGAGG+TGG - chr3_4:46784501-46784520 None:intergenic 40.0%
GTGACAATTAACAGCTTACC+AGG - chr3_4:46784633-46784652 None:intergenic 40.0%
TTTCCCTATAATGCCCTGTT+TGG + chr3_4:46784656-46784675 Msa0503510:intron 40.0%
GAAAAAGATGCAGACTCAGT+TGG + chr3_4:46785121-46785140 Msa0503510:CDS 40.0%
GGTTTATTAGACTTCTCAGC+AGG - chr3_4:46785172-46785191 None:intergenic 40.0%
CTGAAGGAGGTTTATCATCT+TGG - chr3_4:46785252-46785271 None:intergenic 40.0%
!!! TGGGTACTTTTTTCTGAAGG+AGG - chr3_4:46785265-46785284 None:intergenic 40.0%
! GGTGATATTGAAGATGATGG+TGG + chr3_4:46785289-46785308 Msa0503510:CDS 40.0%
ATAGCGATGCAAAGGTGATT+CGG + chr3_4:46785368-46785387 Msa0503510:CDS 40.0%
! AAGCTTTATAATCGGCACCA+AGG - chr3_4:46785655-46785674 None:intergenic 40.0%
AGATGTGCATCCAATGTAGG+GGG - chr3_4:46779887-46779906 None:intergenic 45.0%
CAGATGTGCATCCAATGTAG+GGG - chr3_4:46779888-46779907 None:intergenic 45.0%
GCAGATGTGCATCCAATGTA+GGG - chr3_4:46779889-46779908 None:intergenic 45.0%
AGCAGATGTGCATCCAATGT+AGG - chr3_4:46779890-46779909 None:intergenic 45.0%
AGTGGAAGAGTGGAGAAAGA+GGG - chr3_4:46780017-46780036 None:intergenic 45.0%
! AGAAGATCCTGTCTTTTCCG+AGG + chr3_4:46780267-46780286 Msa0503510:five_prime_UTR 45.0%
TTTCCGAGGCTTGTGAGTTT+AGG + chr3_4:46780281-46780300 Msa0503510:five_prime_UTR 45.0%
TCACCTAAACTCACAAGCCT+CGG - chr3_4:46780287-46780306 None:intergenic 45.0%
TTTCCCAGGTAGCTGTTCTT+AGG + chr3_4:46780465-46780484 Msa0503510:intron 45.0%
GAGTCGTTTCTTGCAGTTGT+TGG + chr3_4:46780782-46780801 Msa0503510:CDS 45.0%
CATGTGTCTAACACTCCTCT+CGG - chr3_4:46780810-46780829 None:intergenic 45.0%
TGTGGAATGGAAATTCCACC+TGG + chr3_4:46780863-46780882 Msa0503510:CDS 45.0%
! GATCTCCATTTGAAACCAGG+TGG - chr3_4:46780881-46780900 None:intergenic 45.0%
ATGGAGATCTAGAAGAGAGG+TGG + chr3_4:46780892-46780911 Msa0503510:CDS 45.0%
CTAGAAGAGAGGTGGTTGAT+TGG + chr3_4:46780900-46780919 Msa0503510:CDS 45.0%
GCACTTAGTGGGATAAGACT+TGG + chr3_4:46781182-46781201 Msa0503510:intron 45.0%
GCTAGTGCCAAATTATGAGC+AGG - chr3_4:46781518-46781537 None:intergenic 45.0%
AGAAGTTAGTGCACGAATGG+TGG + chr3_4:46781565-46781584 Msa0503510:CDS 45.0%
ACGCATGCATACTCTTTCTC+AGG + chr3_4:46781672-46781691 Msa0503510:intron 45.0%
AAGGGCTTCTTACCCCAATT+TGG - chr3_4:46781810-46781829 None:intergenic 45.0%
AAGGTGGTTTCACCACAATC+AGG + chr3_4:46782031-46782050 Msa0503510:CDS 45.0%
TCACCACAATCAGGAAGTCA+AGG + chr3_4:46782040-46782059 Msa0503510:CDS 45.0%
CACCACAATCAGGAAGTCAA+GGG + chr3_4:46782041-46782060 Msa0503510:CDS 45.0%
CGTGGATGAGTATTTCGTAC+TGG - chr3_4:46782074-46782093 None:intergenic 45.0%
ATCAGTGCAGAGTGTGTTGA+TGG + chr3_4:46782125-46782144 Msa0503510:CDS 45.0%
GTGGATAGTATCAACGTGCA+AGG - chr3_4:46782318-46782337 None:intergenic 45.0%
CTTAGCACTTCTACTCCTCT+TGG - chr3_4:46782417-46782436 None:intergenic 45.0%
!! CAAGAGGAGTAGAAGTGCTA+AGG + chr3_4:46782415-46782434 Msa0503510:CDS 45.0%
GGTTCTCCTCAGTCTTCTAA+CGG + chr3_4:46782437-46782456 Msa0503510:CDS 45.0%
AGTCTTCTAACGGTCGAGAA+GGG + chr3_4:46782447-46782466 Msa0503510:CDS 45.0%
! GAGGTACTCTGTCAAGATAG+TGG + chr3_4:46782620-46782639 Msa0503510:CDS 45.0%
! TGTCAAGATAGTGGTATCCG+AGG + chr3_4:46782629-46782648 Msa0503510:CDS 45.0%
TTGCTACCACATGACTAGGA+GGG - chr3_4:46782997-46783016 None:intergenic 45.0%
ATTGCTACCACATGACTAGG+AGG - chr3_4:46782998-46783017 None:intergenic 45.0%
GGAATTGCTACCACATGACT+AGG - chr3_4:46783001-46783020 None:intergenic 45.0%
ACCCCCTCAAAATTAAGCCT+TGG + chr3_4:46783281-46783300 Msa0503510:intron 45.0%
!! GTGGATCCCTGCTTTTAAGT+TGG + chr3_4:46784419-46784438 Msa0503510:CDS 45.0%
GCTTGGCCAACTTAAAAGCA+GGG - chr3_4:46784428-46784447 None:intergenic 45.0%
! AGAACAAGAGTTGATTGCCG+AGG + chr3_4:46784509-46784528 Msa0503510:CDS 45.0%
! CGGCACGTGGGTTAATATAA+AGG + chr3_4:46785024-46785043 Msa0503510:CDS 45.0%
CCAAAGATGGAGACAAAGTG+AGG - chr3_4:46785102-46785121 None:intergenic 45.0%
CCTCACTTTGTCTCCATCTT+TGG + chr3_4:46785099-46785118 Msa0503510:CDS 45.0%
!! TGATGGTGGTAACAACGACA+AGG + chr3_4:46785303-46785322 Msa0503510:CDS 45.0%
TGCTGAGAACCTTCGTATTG+TGG - chr3_4:46785610-46785629 None:intergenic 45.0%
! GCAACCGCAATTTGAAACCT+TGG + chr3_4:46785635-46785654 Msa0503510:three_prime_UTR 45.0%
GGCACCAAGGTTTCAAATTG+CGG - chr3_4:46785642-46785661 None:intergenic 45.0%
!! ATTTGTAAAATAATAATATA+AGG + chr3_4:46781285-46781304 Msa0503510:intron 5.0%
GATGTGCATCCAATGTAGGG+GGG - chr3_4:46779886-46779905 None:intergenic 50.0%
TTGCCATGGAGAGTTGCAGA+GGG - chr3_4:46779914-46779933 None:intergenic 50.0%
ATTGCCATGGAGAGTTGCAG+AGG - chr3_4:46779915-46779934 None:intergenic 50.0%
GAGTGGAAGAGTGGAGAAAG+AGG - chr3_4:46780018-46780037 None:intergenic 50.0%
AAAGTAGGTGGGGTTGAGAG+TGG - chr3_4:46780035-46780054 None:intergenic 50.0%
TCACAAGCCTCGGAAAAGAC+AGG - chr3_4:46780277-46780296 None:intergenic 50.0%
ACTCCCCAGCAGAATCCTTA+AGG - chr3_4:46780766-46780785 None:intergenic 50.0%
GCAGCAATACTGATGCGTAG+CGG - chr3_4:46781080-46781099 None:intergenic 50.0%
CTACGCATCAGTATTGCTGC+TGG + chr3_4:46781080-46781099 Msa0503510:intron 50.0%
TGCGACGCTATAGCACTTAG+TGG + chr3_4:46781170-46781189 Msa0503510:intron 50.0%
GCGACGCTATAGCACTTAGT+GGG + chr3_4:46781171-46781190 Msa0503510:intron 50.0%
!! TGCACGAATGGTGGATGACA+AGG + chr3_4:46781574-46781593 Msa0503510:CDS 50.0%
AGATAGGAGGGGGCAGAAAA+AGG + chr3_4:46782001-46782020 Msa0503510:CDS 50.0%
CACCCTTGACTTCCTGATTG+TGG - chr3_4:46782046-46782065 None:intergenic 50.0%
GTGTTCCCGAGTTAAGACTG+CGG - chr3_4:46782156-46782175 None:intergenic 50.0%
ACGTGCAAGGAAGAAAGAGC+TGG - chr3_4:46782305-46782324 None:intergenic 50.0%
!! GTTGGTGATGATGCAAAGCG+AGG + chr3_4:46782389-46782408 Msa0503510:CDS 50.0%
TCTCGACCGTTAGAAGACTG+AGG - chr3_4:46782446-46782465 None:intergenic 50.0%
CAGTCTTCTAACGGTCGAGA+AGG + chr3_4:46782446-46782465 Msa0503510:CDS 50.0%
GTCTTCTAACGGTCGAGAAG+GGG + chr3_4:46782448-46782467 Msa0503510:CDS 50.0%
TGACTGTCTCCTCTCTCACT+AGG + chr3_4:46783316-46783335 Msa0503510:intron 50.0%
!! TTGGCAACGCCACTGATTCT+TGG + chr3_4:46783969-46783988 Msa0503510:intron 50.0%
GGCTTGGCCAACTTAAAAGC+AGG - chr3_4:46784429-46784448 None:intergenic 50.0%
TTGAGATGAGACAACCTGGC+CGG + chr3_4:46784457-46784476 Msa0503510:CDS 50.0%
TGTTCTTCAAGAGGTGGAGC+TGG - chr3_4:46784495-46784514 None:intergenic 50.0%
! CAAGAGTTGATTGCCGAGGT+TGG + chr3_4:46784513-46784532 Msa0503510:CDS 50.0%
ATCACTCCACCATGCATCGA+CGG - chr3_4:46784544-46784563 None:intergenic 50.0%
! TCGATGCATGGTGGAGTGAT+GGG + chr3_4:46784544-46784563 Msa0503510:CDS 50.0%
GACAAGGACAACAGTGAGAG+TGG + chr3_4:46785319-46785338 Msa0503510:CDS 50.0%
CATCCAATGTAGGGGGGAGA+AGG - chr3_4:46779880-46779899 None:intergenic 55.0%
CTTCCCTCTGCAACTCTCCA+TGG + chr3_4:46779908-46779927 Msa0503510:five_prime_UTR 55.0%
!! GAAAGAGGGCGTTGAGTGAG+AGG - chr3_4:46780003-46780022 None:intergenic 55.0%
TGGGGTTGAGAGTGGAAGAG+TGG - chr3_4:46780027-46780046 None:intergenic 55.0%
! TTGCAGTTGTTGGCACCGAG+AGG + chr3_4:46780792-46780811 Msa0503510:CDS 55.0%
TCGTTTGGTCAGGACTTGCG+TGG + chr3_4:46781734-46781753 Msa0503510:CDS 55.0%
TCAGGACTTGCGTGGACATG+TGG + chr3_4:46781742-46781761 Msa0503510:CDS 55.0%
GACCTGCCGCAGTCTTAACT+CGG + chr3_4:46782147-46782166 Msa0503510:CDS 55.0%
ACCTGCCGCAGTCTTAACTC+GGG + chr3_4:46782148-46782167 Msa0503510:CDS 55.0%
AGGCTGTTGCTGAGAGACTC+GGG - chr3_4:46782344-46782363 None:intergenic 55.0%
GAGGCTGTTGCTGAGAGACT+CGG - chr3_4:46782345-46782364 None:intergenic 55.0%
TCTCTCAGCAACAGCCTCAC+AGG + chr3_4:46782347-46782366 Msa0503510:CDS 55.0%
ATGCAAAGCGAGGAGCCAAG+AGG + chr3_4:46782399-46782418 Msa0503510:CDS 55.0%
CTAACGGTCGAGAAGGGGTT+AGG + chr3_4:46782453-46782472 Msa0503510:CDS 55.0%
ATAGTGGTATCCGAGGCTGC+TGG + chr3_4:46782636-46782655 Msa0503510:CDS 55.0%
TACACCTGAACCAGCAGCCT+CGG - chr3_4:46782649-46782668 None:intergenic 55.0%
! TTGCCAAGACCCTGAGTTGG+GGG - chr3_4:46783956-46783975 None:intergenic 55.0%
GTTGCCAAGACCCTGAGTTG+GGG - chr3_4:46783957-46783976 None:intergenic 55.0%
CGTTGCCAAGACCCTGAGTT+GGG - chr3_4:46783958-46783977 None:intergenic 55.0%
! GTCGATGCATGGTGGAGTGA+TGG + chr3_4:46784543-46784562 Msa0503510:CDS 55.0%
! ATGCATGGTGGAGTGATGGG+TGG + chr3_4:46784547-46784566 Msa0503510:CDS 55.0%
!! ATGGTGGAGTGATGGGTGGT+GGG + chr3_4:46784551-46784570 Msa0503510:CDS 55.0%
! AGATTGGTTAGGCGGCACGT+GGG + chr3_4:46785012-46785031 Msa0503510:CDS 55.0%
!! GAGGGCGTTGAGTGAGAGGT+TGG - chr3_4:46779999-46780018 None:intergenic 60.0%
TCCCGAGTTAAGACTGCGGC+AGG - chr3_4:46782152-46782171 None:intergenic 60.0%
TGCTGAGAGACTCGGGGTTG+TGG - chr3_4:46782337-46782356 None:intergenic 60.0%
GGCTGTTGCTGAGAGACTCG+GGG - chr3_4:46782343-46782362 None:intergenic 60.0%
!! GTATCCGAGGCTGCTGGTTC+AGG + chr3_4:46782642-46782661 Msa0503510:CDS 60.0%
! GCATTGGCGGAGCCACATAG+TGG + chr3_4:46783187-46783206 Msa0503510:intron 60.0%
TGAACCCCCTGGCCACTATG+TGG - chr3_4:46783202-46783221 None:intergenic 60.0%
! GAAGGTGCAGTTGAACCCCC+TGG - chr3_4:46783213-46783232 None:intergenic 60.0%
GAACCCCCAACTCAGGGTCT+TGG + chr3_4:46783950-46783969 Msa0503510:intron 60.0%
GCGTTGCCAAGACCCTGAGT+TGG - chr3_4:46783959-46783978 None:intergenic 60.0%
! AAGAGGTGGAGCTGGCCTGA+TGG - chr3_4:46784487-46784506 None:intergenic 60.0%
ATCGACGGCGGTTCCAACCT+CGG - chr3_4:46784529-46784548 None:intergenic 60.0%
TTGGAACCGCCGTCGATGCA+TGG + chr3_4:46784532-46784551 Msa0503510:CDS 60.0%
! ACTCCACCATGCATCGACGG+CGG - chr3_4:46784541-46784560 None:intergenic 60.0%
!! CATGGTGGAGTGATGGGTGG+TGG + chr3_4:46784550-46784569 Msa0503510:CDS 60.0%
!! TGGAGTGATGGGTGGTGGGA+GGG + chr3_4:46784555-46784574 Msa0503510:CDS 60.0%
! GAGATTGGTTAGGCGGCACG+TGG + chr3_4:46785011-46785030 Msa0503510:CDS 60.0%
GCGGAGCCACATAGTGGCCA+GGG + chr3_4:46783193-46783212 Msa0503510:intron 65.0%
CGGAGCCACATAGTGGCCAG+GGG + chr3_4:46783194-46783213 Msa0503510:intron 65.0%
GGAGCCACATAGTGGCCAGG+GGG + chr3_4:46783195-46783214 Msa0503510:intron 65.0%
AACCTGGCCGGTCGACCATC+AGG + chr3_4:46784469-46784488 Msa0503510:CDS 65.0%
! GAGCTGGCCTGATGGTCGAC+CGG - chr3_4:46784479-46784498 None:intergenic 65.0%
GAACCGCCGTCGATGCATGG+TGG + chr3_4:46784535-46784554 Msa0503510:CDS 65.0%
!! GTGGAGTGATGGGTGGTGGG+AGG + chr3_4:46784554-46784573 Msa0503510:CDS 65.0%
!! GGAGTGATGGGTGGTGGGAG+GGG + chr3_4:46784556-46784575 Msa0503510:CDS 65.0%
!! GAGTGATGGGTGGTGGGAGG+GGG + chr3_4:46784557-46784576 Msa0503510:CDS 65.0%
GGCGGAGCCACATAGTGGCC+AGG + chr3_4:46783192-46783211 Msa0503510:intron 70.0%
GGCCTGATGGTCGACCGGCC+AGG - chr3_4:46784474-46784493 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 46779877 46786025 46779877 ID=Msa0503510;Name=Msa0503510
chr3_4 mRNA 46779877 46786025 46779877 ID=Msa0503510-mRNA-1;Parent=Msa0503510;Name=Msa0503510-mRNA-1;_AED=0.20;_eAED=0.20;_QI=771|1|1|1|0.62|0.44|9|454|670
chr3_4 exon 46779877 46780472 46779877 ID=Msa0503510-mRNA-1:exon:9982;Parent=Msa0503510-mRNA-1
chr3_4 exon 46780505 46780968 46780505 ID=Msa0503510-mRNA-1:exon:9983;Parent=Msa0503510-mRNA-1
chr3_4 exon 46781510 46781595 46781510 ID=Msa0503510-mRNA-1:exon:9984;Parent=Msa0503510-mRNA-1
chr3_4 exon 46781694 46781816 46781694 ID=Msa0503510-mRNA-1:exon:9985;Parent=Msa0503510-mRNA-1
chr3_4 exon 46781930 46782748 46781930 ID=Msa0503510-mRNA-1:exon:9986;Parent=Msa0503510-mRNA-1
chr3_4 exon 46784417 46784633 46784417 ID=Msa0503510-mRNA-1:exon:9987;Parent=Msa0503510-mRNA-1
chr3_4 exon 46784963 46785517 46784963 ID=Msa0503510-mRNA-1:exon:9988;Parent=Msa0503510-mRNA-1
chr3_4 exon 46785549 46785858 46785549 ID=Msa0503510-mRNA-1:exon:9989;Parent=Msa0503510-mRNA-1
chr3_4 exon 46785958 46786025 46785958 ID=Msa0503510-mRNA-1:exon:9990;Parent=Msa0503510-mRNA-1
chr3_4 five_prime_UTR 46779877 46780472 46779877 ID=Msa0503510-mRNA-1:five_prime_utr;Parent=Msa0503510-mRNA-1
chr3_4 five_prime_UTR 46780505 46780679 46780505 ID=Msa0503510-mRNA-1:five_prime_utr;Parent=Msa0503510-mRNA-1
chr3_4 CDS 46780680 46780968 46780680 ID=Msa0503510-mRNA-1:cds;Parent=Msa0503510-mRNA-1
chr3_4 CDS 46781510 46781595 46781510 ID=Msa0503510-mRNA-1:cds;Parent=Msa0503510-mRNA-1
chr3_4 CDS 46781694 46781816 46781694 ID=Msa0503510-mRNA-1:cds;Parent=Msa0503510-mRNA-1
chr3_4 CDS 46781930 46782748 46781930 ID=Msa0503510-mRNA-1:cds;Parent=Msa0503510-mRNA-1
chr3_4 CDS 46784417 46784633 46784417 ID=Msa0503510-mRNA-1:cds;Parent=Msa0503510-mRNA-1
chr3_4 CDS 46784963 46785441 46784963 ID=Msa0503510-mRNA-1:cds;Parent=Msa0503510-mRNA-1
chr3_4 three_prime_UTR 46785442 46785517 46785442 ID=Msa0503510-mRNA-1:three_prime_utr;Parent=Msa0503510-mRNA-1
chr3_4 three_prime_UTR 46785549 46785858 46785549 ID=Msa0503510-mRNA-1:three_prime_utr;Parent=Msa0503510-mRNA-1
chr3_4 three_prime_UTR 46785958 46786025 46785958 ID=Msa0503510-mRNA-1:three_prime_utr;Parent=Msa0503510-mRNA-1
Gene Sequence

>Msa0503510

ATGTCGATAGACGATCTGTGTTTTGTGGAATGGAAAGAGCATTTTGTTTCACAAGAGCGTGGCCATCGTATAGTTCACTATTACCTTAAGGATTCTGCTGGGGAGTCGTTTCTTGCAGTTGTTGGCACCGAGAGGAGTGTTAGACACATGTGCTATGTTATTGCAGAGGAGTTCTTGGAAATTTGTGGAATGGAAATTCCACCTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTTGATTGGCTGACGTCGATGCTATCAAAGCAGCATCTACATGAAGATAGAAGTATATGGCCTGCTCATAATTTGGCACTAGCTCATAAGATCGCAAATGGCAGTGTCAAAGAAGTTAGTGCACGAATGGTGGATGACAAGGACATTCCAAAGAGTAACTCCAAATTATCCAATTCAGACATCGTTTGGTCAGGACTTGCGTGGACATGTGGCAAACAACTCAAACATTATCCTGCTTTTTGCAGAAATGGGATCCAAATTGGGATTCAATCCTTTGTTTTCGTCATGGGCAATGGAGAGAACCATTATGTTGCTTATTTAGAGGATATGTATGAAGATAGGAGGGGGCAGAAAAAGGTTAAAGTAAGGTGGTTTCACCACAATCAGGAAGTCAAGGGTGCAATTCCAGTACGAAATACTCATCCACGAGAAGTTTTCATCACATCATATTCTCAAGTCATCAGTGCAGAGTGTGTTGATGGACCTGCCGCAGTCTTAACTCGGGAACACTTCGAAAAATGCACACCTTATTTTTCCCCCTCTTCAACAGACAGAATACATCTGTGCTTTAGGCAATTAAAAGGCAACAAAGTCAAGCCCTTTGACTTAAGCAAACTGCGTGGCTACTATACTCAGCCAGCTCTTTCTTCCTTGCACGTTGATACTATCCACAACCCCGAGTCTCTCAGCAACAGCCTCACAGGAGAAGATGAAGATTTGGATGTTGGTGATGATGCAAAGCGAGGAGCCAAGAGGAGTAGAAGTGCTAAGGGTTCTCCTCAGTCTTCTAACGGTCGAGAAGGGGTTAGGAAGTTGATTAGGAGTAATCCAATGATGGGATACCAAACTTTCCAAGTTGTAAATTATGCAAGGCCGGATAGGAGATTGCTTTCTCTGAAAAAGGTTGATTGTCAACCTTGGTTTGATCCCACATACAAGGTTGATGACAAGATAGAGGTACTCTGTCAAGATAGTGGTATCCGAGGCTGCTGGTTCAGGTGTACAATTGTACAGGTAGCTCGGAAACAGCTGAAAGTCCAATATGATGATGTTCAAGATGAAGATGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTTTTAAGTTGGCCAAGCCTGATAAACTTGAGATGAGACAACCTGGCCGGTCGACCATCAGGCCAGCTCCACCTCTTGAAGAACAAGAGTTGATTGCCGAGGTTGGAACCGCCGTCGATGCATGGTGGAGTGATGGGTGGTGGGAGGGGGTTATAACTACAATTGACAACTGTGGTGATGACAATGTTCAAGTTTACTTTCCTGGTGAAAGCTTGCAAATGACAGTACATAAGAAGGACTTAAGAATATCTAGAGATTGGTTAGGCGGCACGTGGGTTAATATAAAGGCAAAGCCTGATATAACCCCAACTATATTAACTGATATTAGCTTTAACACAAACCTCACTTTGTCTCCATCTTTGGAAAAAGATGCAGACTCAGTTGGGTTTGCTAATTCATGTCATGAAGTTCCTGCTGAGAAGTCTAATAAACCTGATATTGTTGAAGAGAAACTTGTATATTGTGGTGTTACTGAAAATGGGGTTTGTGTCCAAGATGATAAACCTCCTTCAGAAAAAAGTACCCAAGTTGGTGATATTGAAGATGATGGTGGTAACAACGACAAGGACAACAGTGAGAGTGGTGATAACAACAATGTTAATAATGAGAATAGCGATGCAAAGGTGATTCGGACTTCTAGTGTTGAGTGTAAAAGTGTAGAACTAATGGAAGTTGCTGTGTAA
Protein sequence

>Msa0503510

MSIDDLCFVEWKEHFVSQERGHRIVHYYLKDSAGESFLAVVGTERSVRHMCYVIAEEFLEICGMEIPPGFKWRSRREVVDWLTSMLSKQHLHEDRSIWPAHNLALAHKIANGSVKEVSARMVDDKDIPKSNSKLSNSDIVWSGLAWTCGKQLKHYPAFCRNGIQIGIQSFVFVMGNGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNTHPREVFITSYSQVISAECVDGPAAVLTREHFEKCTPYFSPSSTDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSSLHVDTIHNPESLSNSLTGEDEDLDVGDDAKRGAKRSRSAKGSPQSSNGREGVRKLIRSNPMMGYQTFQVVNYARPDRRLLSLKKVDCQPWFDPTYKVDDKIEVLCQDSGIRGCWFRCTIVQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLAKPDKLEMRQPGRSTIRPAPPLEEQELIAEVGTAVDAWWSDGWWEGVITTIDNCGDDNVQVYFPGESLQMTVHKKDLRISRDWLGGTWVNIKAKPDITPTILTDISFNTNLTLSPSLEKDADSVGFANSCHEVPAEKSNKPDIVEEKLVYCGVTENGVCVQDDKPPSEKSTQVGDIEDDGGNNDKDNSESGDNNNVNNENSDAKVIRTSSVECKSVELMEVAV*