AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0410840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0410840 MtrunA17_Chr3g0101951 95.821 670 20 2 1 670 10 671 0.0 1325
Msa0410840 MtrunA17_Chr2g0290351 46.618 547 275 10 5 544 7 543 2.72e-156 467
Msa0410840 MtrunA17_Chr5g0423001 32.184 435 222 8 136 552 27 406 1.66e-62 217
Msa0410840 MtrunA17_Chr1g0192961 32.639 144 77 4 396 538 184 308 1.82e-15 79.0
Msa0410840 MtrunA17_Chr1g0192961 33.566 143 74 6 396 536 23 146 2.33e-14 75.5
Msa0410840 MtrunA17_Chr5g0423021 45.122 82 40 1 8 89 23 99 3.08e-15 72.4
Msa0410840 MtrunA17_Chr3g0105291 31.690 142 91 4 391 530 15 152 8.00e-15 78.6
Msa0410840 MtrunA17_Chr4g0041111 29.801 151 86 3 390 536 10 144 5.33e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0410840 AT5G55600.2 47.590 664 296 11 1 648 1 628 0.0 569
Msa0410840 AT5G55600.1 47.590 664 296 11 1 648 1 628 0.0 569
Msa0410840 AT5G55600.3 47.590 664 296 11 1 648 1 628 0.0 569
Msa0410840 AT1G68580.4 31.683 303 179 8 8 305 10 289 4.06e-36 143
Msa0410840 AT1G68580.4 43.590 156 82 4 396 547 369 522 1.25e-34 139
Msa0410840 AT1G68580.2 31.683 303 179 8 8 305 10 289 8.66e-36 144
Msa0410840 AT1G68580.2 42.767 159 85 4 396 550 369 525 2.30e-35 142
Msa0410840 AT1G68580.3 42.767 159 85 4 396 550 273 429 1.24e-35 142
Msa0410840 AT1G68580.3 38.554 166 98 3 141 305 31 193 2.51e-32 132
Msa0410840 AT1G68580.5 42.767 159 85 4 396 550 323 479 2.70e-35 142
Msa0410840 AT1G68580.5 38.554 166 98 3 141 305 81 243 4.03e-32 132
Msa0410840 AT1G68580.1 43.590 156 82 4 396 547 273 426 5.97e-35 138
Msa0410840 AT1G68580.1 38.554 166 98 3 141 305 31 193 6.24e-33 132
Msa0410840 AT1G26540.1 36.242 149 67 7 396 536 14 142 1.67e-15 80.9
Msa0410840 AT1G09320.1 28.870 239 132 9 396 623 227 438 2.74e-15 79.7
Msa0410840 AT5G58610.10 32.624 141 90 4 394 530 30 169 3.14e-15 80.1
Msa0410840 AT5G58610.3 32.624 141 90 4 394 530 30 169 3.34e-15 80.1
Msa0410840 AT5G58610.8 32.624 141 90 4 394 530 30 169 3.38e-15 80.1
Msa0410840 AT5G58610.2 32.624 141 90 4 394 530 30 169 3.38e-15 80.1
Msa0410840 AT5G58610.1 30.827 133 87 4 402 530 29 160 2.77e-13 73.9
Msa0410840 AT5G58610.6 30.827 133 87 4 402 530 29 160 2.99e-13 73.9
Msa0410840 AT5G58610.5 30.827 133 87 4 402 530 29 160 3.04e-13 73.9
Msa0410840 AT5G58610.11 30.827 133 87 4 402 530 29 160 3.05e-13 73.9
Msa0410840 AT5G58610.9 30.827 133 87 4 402 530 29 160 3.19e-13 73.9
Msa0410840 AT5G58610.7 30.827 133 87 4 402 530 29 160 3.44e-13 73.6
Msa0410840 AT4G17330.3 29.167 168 106 5 380 536 1524 1689 5.65e-13 73.2
Msa0410840 AT4G17330.2 29.167 168 106 5 380 536 1559 1724 5.72e-13 73.2
Msa0410840 AT4G17330.1 29.167 168 106 5 380 536 1559 1724 5.72e-13 73.2

Find 228 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACCATTATGTTGCTTATT+TGG 0.118537 3_2:+52701077 Msa0410840:CDS
CCTCACTTTGTCTCCATCTT+TGG 0.174164 3_2:+52704211 Msa0410840:CDS
TATTGTGGTGTTACTGAAAA+TGG 0.179192 3_2:+52704329 Msa0410840:CDS
TGCAGAAATGGGATCCAAAT+TGG 0.187564 3_2:+52700905 Msa0410840:CDS
ACTTTGTGACAAATGAATTA+AGG 0.187898 3_2:+52699704 Msa0410840:five_prime_UTR
AAGACATGTGTGTTTAATTA+AGG 0.219986 3_2:+52699538 Msa0410840:five_prime_UTR
GAGATTGCTTTCTCTGAAAA+AGG 0.226490 3_2:+52701659 Msa0410840:CDS
GGAGTGATGGGTGGTGGGAG+GGG 0.230468 3_2:+52703668 Msa0410840:CDS
AGTATGGCCTGCTCATAATT+TGG 0.230479 3_2:+52700620 Msa0410840:intron
CACTCAAAACTTCTTCTTGT+TGG 0.241859 3_2:+52699301 Msa0410840:five_prime_UTR
GATAATTTGGAGTTACTCTT+TGG 0.247547 3_2:-52700812 None:intergenic
GATGTCTGAATTGGATAATT+TGG 0.248357 3_2:-52700825 None:intergenic
GAGTGATGGGTGGTGGGAGG+GGG 0.251158 3_2:+52703669 Msa0410840:CDS
AAGGGCTTCTTACCCCAATT+TGG 0.253554 3_2:-52700919 None:intergenic
TGTCTCATCTCAAGTTTATC+AGG 0.263134 3_2:-52703559 None:intergenic
AATTTACAACTTGGAAAGTT+TGG 0.277901 3_2:-52701620 None:intergenic
AATATAGTTGGGGTTATATC+AGG 0.280263 3_2:-52704164 None:intergenic
CTGTGCTTTAGGCAATTAAA+AGG 0.291113 3_2:+52701339 Msa0410840:CDS
AATGTTCAAGTTTACTTTCC+TGG 0.293141 3_2:+52703724 Msa0410840:CDS
TCTCAACTTGGATACCCTTT+TGG 0.297162 3_2:+52699251 Msa0410840:five_prime_UTR
CTGAAGGAGGTTTATCATCT+TGG 0.301328 3_2:-52704361 None:intergenic
CTTTGTGACAAATGAATTAA+GGG 0.306027 3_2:+52699705 Msa0410840:five_prime_UTR
TGTTATTGCAGAGGAGTTCT+TGG 0.306744 3_2:+52699949 Msa0410840:CDS
AGTTTCTCTTCAACAATATC+AGG 0.307576 3_2:-52704302 None:intergenic
TTTCCTAGGTAGCTGTTCTT+AGG 0.315371 3_2:+52699623 Msa0410840:five_prime_UTR
GTGGAGTGATGGGTGGTGGG+AGG 0.316668 3_2:+52703666 Msa0410840:CDS
ATTCCCCGGCAGAATCCTTT+AGG 0.323969 3_2:-52699877 None:intergenic
CATGGTGGAGTGATGGGTGG+TGG 0.333280 3_2:+52703662 Msa0410840:CDS
ACTCAAAACTTCTTCTTGTT+GGG 0.334606 3_2:+52699302 Msa0410840:five_prime_UTR
GTATCCGAGGCTGCTGGTTC+AGG 0.342948 3_2:+52701754 Msa0410840:CDS
CATCTTGAACATCATCATAT+TGG 0.348306 3_2:-52701815 None:intergenic
TTTCCGAGGCTTGTGAGTTT+AGG 0.354545 3_2:+52699443 Msa0410840:five_prime_UTR
CACAGGAGAAGATGAAGATT+TGG 0.355505 3_2:+52701476 Msa0410840:CDS
TGGAGTGATGGGTGGTGGGA+GGG 0.358047 3_2:+52703667 Msa0410840:CDS
CTAATATCAGTTAATATAGT+TGG 0.361422 3_2:-52704176 None:intergenic
ATAGATTAGAATCGACAAAA+TGG 0.362948 3_2:-52699274 None:intergenic
GCAGAAATGGGATCCAAATT+GGG 0.363178 3_2:+52700906 Msa0410840:CDS
GAGGGCGTTGAGTGAGAGGT+TGG 0.363686 3_2:-52699137 None:intergenic
TGCAACTCTCTCCATTTCTA+TGG 0.364295 3_2:+52699061 Msa0410840:five_prime_UTR
AAAGTTTGGTATCCCATCAT+TGG 0.367954 3_2:-52701606 None:intergenic
AATGATGTTAGTATGCTATA+AGG 0.370929 3_2:+52699676 Msa0410840:five_prime_UTR
ACAGAATACATCTGTGCTTT+AGG 0.372094 3_2:+52701328 Msa0410840:CDS
TATCCAATTCAGACATCGTT+TGG 0.378163 3_2:+52700831 Msa0410840:CDS
TGACCAAACGATGTCTGAAT+TGG 0.380608 3_2:-52700834 None:intergenic
TAATATCAGTTAATATAGTT+GGG 0.382595 3_2:-52704175 None:intergenic
ATTGTGGTGTTACTGAAAAT+GGG 0.383755 3_2:+52704330 Msa0410840:CDS
AAGGGGTTAGGAAGTTGATT+AGG 0.389626 3_2:+52701577 Msa0410840:CDS
CGGCACGTGGGTTAATATAA+AGG 0.391397 3_2:+52704136 Msa0410840:CDS
CGCAGTTTGCTTAAGTCAAA+GGG 0.405480 3_2:-52701375 None:intergenic
CCTCCAAATAAGCAACATAA+TGG 0.410956 3_2:-52701080 None:intergenic
GAGGAGTTCTTGGAAATTTG+TGG 0.418318 3_2:+52699959 Msa0410840:CDS
CTAACGGTCGAGAAGGGGTT+AGG 0.422030 3_2:+52701565 Msa0410840:CDS
ACTTAAGAATATCTAGAGAT+TGG 0.424417 3_2:+52704108 Msa0410840:CDS
GTGTAAAAGTGTAGAACTAA+TGG 0.424590 3_2:+52704517 Msa0410840:CDS
CACCCTTGACTTCCTGATTG+TGG 0.427838 3_2:-52701155 None:intergenic
GAGTGGAAGAGTGGAGAAAG+AGG 0.429898 3_2:-52699156 None:intergenic
AAAGTAGGTGGTGTTGAGAG+TGG 0.433570 3_2:-52699173 None:intergenic
GAAAGAGGGCGTTGAGTGAG+AGG 0.436369 3_2:-52699141 None:intergenic
TGTTCTTCAAGAGGTGGAGC+TGG 0.438624 3_2:-52703604 None:intergenic
GATGACAAAAGCTTTATAAT+CGG 0.440048 3_2:-52704772 None:intergenic
AACCTGGCCGGTCGACCATC+AGG 0.441895 3_2:+52703581 Msa0410840:CDS
GCCTTGCATAATTTACAACT+TGG 0.442585 3_2:-52701629 None:intergenic
CATCTCAAGTTTATCAGGCT+TGG 0.443426 3_2:-52703554 None:intergenic
GGTTGAAATTGCCATAGAAA+TGG 0.443742 3_2:-52699072 None:intergenic
GTTCTTGGAAATTTGTGGAA+TGG 0.443777 3_2:+52699964 Msa0410840:CDS
ATCAGTGCAGAGTGTGTTGA+TGG 0.446027 3_2:+52701237 Msa0410840:CDS
GAATCGACAAAATGGCCAAA+AGG 0.448405 3_2:-52699266 None:intergenic
GAAGATGAAGATTTGGATGT+TGG 0.448739 3_2:+52701483 Msa0410840:CDS
CTAGAAGAGAGGTGGTTGAT+TGG 0.452451 3_2:+52700014 Msa0410840:CDS
AAATTCCACCTGGTTTCAAA+TGG 0.455217 3_2:+52699987 Msa0410840:CDS
CATCTTCAATATCACCAACT+TGG 0.455980 3_2:-52704394 None:intergenic
TGCTGAGAGACTCGGGGTTG+TGG 0.458899 3_2:-52701446 None:intergenic
CTTAGCACTTCTACTCCTCT+TGG 0.464617 3_2:-52701526 None:intergenic
CTCAAAATCACAGTACAATC+AGG 0.467652 3_2:-52699563 None:intergenic
ATGGTGGAGTGATGGGTGGT+GGG 0.468229 3_2:+52703663 Msa0410840:CDS
AATGAATTAAGGGTCTAGAT+TGG 0.471510 3_2:+52699715 Msa0410840:five_prime_UTR
GGCCTGATGGTCGACCGGCC+AGG 0.474559 3_2:-52703583 None:intergenic
AATTCAGACATCGTTTGGTC+AGG 0.475598 3_2:+52700836 Msa0410840:CDS
TGGAGGATATGTATGAAGAT+AGG 0.478711 3_2:+52701097 Msa0410840:CDS
AACTGCAAGGAATGATTCCC+CGG 0.479312 3_2:-52699891 None:intergenic
GAGGCTGTTGCTGAGAGACT+CGG 0.480968 3_2:-52701454 None:intergenic
CGTGGATGAGTATTTCGTAC+TGG 0.483597 3_2:-52701183 None:intergenic
ATAGCGATGCAAAGGTGATT+CGG 0.485856 3_2:+52704480 Msa0410840:CDS
AGGCTGTTGCTGAGAGACTC+GGG 0.485900 3_2:-52701453 None:intergenic
GAATCATTCCTTGCAGTTGT+CGG 0.487099 3_2:+52699896 Msa0410840:CDS
CAAGAGGAGTAGAAGTGCTA+AGG 0.492686 3_2:+52701527 Msa0410840:CDS
GGCTTGGCCAACTTAAAAGC+AGG 0.493219 3_2:-52703538 None:intergenic
AATCGACAAAATGGCCAAAA+GGG 0.493771 3_2:-52699265 None:intergenic
ACGCAGTTTGCTTAAGTCAA+AGG 0.494480 3_2:-52701376 None:intergenic
AGCAAAATCTTGAGTAAAGT+AGG 0.494883 3_2:-52699188 None:intergenic
CTTGTCATCAACCTTGTATG+TGG 0.496161 3_2:-52701706 None:intergenic
GGCACCAAGGTTTCAAATTG+CGG 0.497650 3_2:-52704751 None:intergenic
AGAGAAAGCAATCTCCTATC+CGG 0.497849 3_2:-52701651 None:intergenic
GTCGATGCATGGTGGAGTGA+TGG 0.498558 3_2:+52703655 Msa0410840:CDS
AAGGTGGTTTCACCACAATC+AGG 0.498870 3_2:+52701143 Msa0410840:CDS
CTAGCTCATAAGATCGCAAA+TGG 0.499196 3_2:+52700645 Msa0410840:CDS
GCAGATGTGCATCCAATGTA+GGG 0.499364 3_2:-52699031 None:intergenic
CCATTATGTTGCTTATTTGG+AGG 0.499705 3_2:+52701080 Msa0410840:CDS
TCTGATCTGATTGTAGACAT+AGG 0.499878 3_2:+52699364 Msa0410840:five_prime_UTR
GATTAGGAGTAATCCAATGA+TGG 0.500360 3_2:+52701593 Msa0410840:CDS
AGAAATGGAGAGAGTTGCAG+AGG 0.502373 3_2:-52699057 None:intergenic
TATAGTTCACTATTACCTAA+AGG 0.504218 3_2:+52699862 Msa0410840:CDS
TAATGTAAATATTAGTTACA+AGG 0.504739 3_2:+52704851 Msa0410840:three_prime_UTR
CAAGAGTTGATTGCCGAGGT+TGG 0.506135 3_2:+52703625 Msa0410840:CDS
TGCTGAGAACCTTCGTATTG+TGG 0.507697 3_2:-52704719 None:intergenic
GGTTTATTAGACTTCTCAGC+AGG 0.507837 3_2:-52704281 None:intergenic
TCTCTCAGCAACAGCCTCAC+AGG 0.508253 3_2:+52701459 Msa0410840:CDS
GCAACCGCAATTTGAAACCT+TGG 0.509016 3_2:+52704747 Msa0410840:three_prime_UTR
AGTCTTCTAACGGTCGAGAA+GGG 0.510609 3_2:+52701559 Msa0410840:CDS
TTGGAACCGCCGTCGATGCA+TGG 0.511987 3_2:+52703644 Msa0410840:CDS
CAACATCATATGTTTATGAA+TGG 0.512705 3_2:-52704570 None:intergenic
AACTCTTGTTCTTCAAGAGG+TGG 0.514625 3_2:-52703610 None:intergenic
AGTGGAAGAGTGGAGAAAGA+GGG 0.516101 3_2:-52699155 None:intergenic
CTAGATCTCCATTTGAAACC+AGG 0.519075 3_2:-52699995 None:intergenic
TAAATTATGCAAGGCCGGAT+AGG 0.519189 3_2:+52701637 Msa0410840:CDS
TTGGTTTGATCCCACATACA+AGG 0.520051 3_2:+52701695 Msa0410840:CDS
GACCTGCCGCAGTCTTAACT+CGG 0.521481 3_2:+52701259 Msa0410840:CDS
TGGTGTTGAGAGTGGAAGAG+TGG 0.524914 3_2:-52699165 None:intergenic
AGAAGAAGAAGAAAGAGGAT+AGG 0.525033 3_2:-52699093 None:intergenic
TATTAGTTACAAGGGATATG+TGG 0.525969 3_2:+52704860 Msa0410840:three_prime_UTR
TACACCTGAACCAGCAGCCT+CGG 0.528435 3_2:-52701758 None:intergenic
GAGCTGGCCTGATGGTCGAC+CGG 0.528619 3_2:-52703588 None:intergenic
TCCCGAGTTAAGACTGCGGC+AGG 0.529171 3_2:-52701261 None:intergenic
GCAAATGACAGTACATAAGA+AGG 0.532487 3_2:+52704085 Msa0410840:CDS
ATGTATTCTGTCTGTTGAAG+AGG 0.534662 3_2:-52701316 None:intergenic
TATCCAAGTTGAGAAAGAAA+AGG 0.535712 3_2:-52699242 None:intergenic
AAAAGGTTGATTGTCAACCT+TGG 0.536017 3_2:+52701676 Msa0410840:CDS
GAGATTGGTTAGGCGGCACG+TGG 0.538949 3_2:+52704123 Msa0410840:CDS
TCGATGCATGGTGGAGTGAT+GGG 0.539124 3_2:+52703656 Msa0410840:CDS
TATTACCTAAAGGATTCTGC+CGG 0.539895 3_2:+52699872 Msa0410840:CDS
ATCGACGGCGGTTCCAACCT+CGG 0.539976 3_2:-52703638 None:intergenic
TCCAAGTTGTAAATTATGCA+AGG 0.541812 3_2:+52701628 Msa0410840:CDS
GTTCAAGATGAAGATGGAAG+TGG 0.543374 3_2:+52701828 Msa0410840:CDS
AGCAGATGTGCATCCAATGT+AGG 0.543554 3_2:-52699032 None:intergenic
GGATATGTATGAAGATAGGA+GGG 0.543811 3_2:+52701101 Msa0410840:CDS
AGAAGTTAGTGCACGAATGG+TGG 0.544357 3_2:+52700677 Msa0410840:CDS
TGTATTCTGTCTGTTGAAGA+GGG 0.546274 3_2:-52701315 None:intergenic
GATGATGTTCAAGATGAAGA+TGG 0.547654 3_2:+52701822 Msa0410840:CDS
ATCTTCAATATCACCAACTT+GGG 0.547805 3_2:-52704393 None:intergenic
GTTCAGGTGTACAATTGTAC+AGG 0.551822 3_2:+52701770 Msa0410840:CDS
AAGAGGAGTAGAAGTGCTAA+GGG 0.554787 3_2:+52701528 Msa0410840:CDS
CAGTGTTAGAGATCTTTGAA+TGG 0.555292 3_2:+52704665 Msa0410840:three_prime_UTR
AAACCTAAGAACAGCTACCT+AGG 0.555469 3_2:-52699626 None:intergenic
AGGATATGTATGAAGATAGG+AGG 0.555793 3_2:+52701100 Msa0410840:CDS
AGTTGTAAATTATGCAAGGC+CGG 0.557828 3_2:+52701632 Msa0410840:CDS
CAGTCTTCTAACGGTCGAGA+AGG 0.558109 3_2:+52701558 Msa0410840:CDS
TCAACACTGTACATCTATGA+AGG 0.559572 3_2:-52704912 None:intergenic
TGCACGAATGGTGGATGACA+AGG 0.561322 3_2:+52700686 Msa0410840:CDS
ATCAACTCTTGTTCTTCAAG+AGG 0.561430 3_2:-52703613 None:intergenic
AGAATATCTAGAGATTGGTT+AGG 0.562164 3_2:+52704113 Msa0410840:CDS
TCACAAGCCTCGGAAAAGAC+AGG 0.564426 3_2:-52699436 None:intergenic
ATTACCTAAAGGATTCTGCC+GGG 0.564646 3_2:+52699873 Msa0410840:CDS
AAGAGGTGGAGCTGGCCTGA+TGG 0.565217 3_2:-52703596 None:intergenic
TCACCACAATCAGGAAGTCA+AGG 0.566128 3_2:+52701152 Msa0410840:CDS
ATCACTCCACCATGCATCGA+CGG 0.566290 3_2:-52703653 None:intergenic
TCACCTAAACTCACAAGCCT+CGG 0.566918 3_2:-52699446 None:intergenic
CAAGGTTGATGACAAGATAG+AGG 0.568710 3_2:+52701713 Msa0410840:CDS
CCAAAGATGGAGACAAAGTG+AGG 0.574576 3_2:-52704211 None:intergenic
GCTAGTGCCAAATTATGAGC+AGG 0.576048 3_2:-52700627 None:intergenic
CAAAGAAGTTAGTGCACGAA+TGG 0.576933 3_2:+52700674 Msa0410840:CDS
AATGTAAATATTAGTTACAA+GGG 0.577147 3_2:+52704852 Msa0410840:three_prime_UTR
GTCTTCTAACGGTCGAGAAG+GGG 0.578103 3_2:+52701560 Msa0410840:CDS
ATTAGGAGTAATCCAATGAT+GGG 0.578224 3_2:+52701594 Msa0410840:CDS
TAATGAGAATAGCGATGCAA+AGG 0.580442 3_2:+52704472 Msa0410840:CDS
TCTTAGGTTTGATGTAACTG+AGG 0.584403 3_2:+52699639 Msa0410840:five_prime_UTR
ATCTAGTGTGTATCTAGTGT+TGG 0.584732 3_2:+52699758 Msa0410840:five_prime_UTR
GTTGGTGATATTGAAGATGA+TGG 0.587520 3_2:+52704398 Msa0410840:CDS
CAGAAATGGGATCCAAATTG+GGG 0.587938 3_2:+52700907 Msa0410840:CDS
GTACAATTGTACAGGTAGCT+CGG 0.594102 3_2:+52701778 Msa0410840:CDS
GGTTCTCCTCAGTCTTCTAA+CGG 0.596785 3_2:+52701549 Msa0410840:CDS
AATATCAGTTAATATAGTTG+GGG 0.597439 3_2:-52704174 None:intergenic
ATATGTATGAAGATAGGAGG+GGG 0.597580 3_2:+52701103 Msa0410840:CDS
GAGGTACTCTGTCAAGATAG+TGG 0.599825 3_2:+52701732 Msa0410840:CDS
ATAGTGGTATCCGAGGCTGC+TGG 0.600674 3_2:+52701748 Msa0410840:CDS
TTGTGGTGTTACTGAAAATG+GGG 0.601376 3_2:+52704331 Msa0410840:CDS
ACGTGCAAGGAAGAAAGAGC+TGG 0.601552 3_2:-52701414 None:intergenic
GAAGAGAAACTTGTATATTG+TGG 0.603101 3_2:+52704314 Msa0410840:CDS
TTGTCATCAACCTTGTATGT+GGG 0.607168 3_2:-52701705 None:intergenic
TCGTTTGGTCAGGACTTGCG+TGG 0.610971 3_2:+52700846 Msa0410840:CDS
GACAAGGACAACAGTGAGAG+TGG 0.610991 3_2:+52704431 Msa0410840:CDS
TATTCTGTCTGTTGAAGAGG+GGG 0.611735 3_2:-52701313 None:intergenic
TTGAGATGAGACAACCTGGC+CGG 0.611994 3_2:+52703569 Msa0410840:CDS
TGTGGAATGGAAATTCCACC+TGG 0.612194 3_2:+52699977 Msa0410840:CDS
TCTCAGTGCCGACAACTGCA+AGG 0.615362 3_2:-52699904 None:intergenic
TTGCAGTTGTCGGCACTGAG+AGG 0.615632 3_2:+52699906 Msa0410840:CDS
GTGGATAGTATCAACGTGCA+AGG 0.618780 3_2:-52701427 None:intergenic
AGATGGAAGTGGAAATCTTG+AGG 0.619674 3_2:+52701839 Msa0410840:CDS
CATCTACATGAAGATAGAAG+TGG 0.624661 3_2:+52700061 Msa0410840:CDS
AGATGTGCATCCAATGTAGG+GGG 0.629878 3_2:-52699029 None:intergenic
ATGCATGGTGGAGTGATGGG+TGG 0.632475 3_2:+52703659 Msa0410840:CDS
GAAATGGAGAGAGTTGCAGA+GGG 0.636901 3_2:-52699056 None:intergenic
ATATCTAGAGATTGGTTAGG+CGG 0.637464 3_2:+52704116 Msa0410840:CDS
AAGCTTTATAATCGGCACCA+AGG 0.638267 3_2:-52704764 None:intergenic
ATTGCCCATGACGAAAACAA+AGG 0.639287 3_2:-52701049 None:intergenic
TCAGGACTTGCGTGGACATG+TGG 0.639982 3_2:+52700854 Msa0410840:CDS
AATCTTCATCTTCTCCTGTG+AGG 0.640822 3_2:-52701473 None:intergenic
AAACTTGAGATGAGACAACC+TGG 0.645947 3_2:+52703565 Msa0410840:CDS
CAGATGTGCATCCAATGTAG+GGG 0.646369 3_2:-52699030 None:intergenic
ACCTGCCGCAGTCTTAACTC+GGG 0.646835 3_2:+52701260 Msa0410840:CDS
GAACCGCCGTCGATGCATGG+TGG 0.651144 3_2:+52703647 Msa0410840:CDS
GCTTGGCCAACTTAAAAGCA+GGG 0.652630 3_2:-52703537 None:intergenic
ATGGAGATCTAGAAGAGAGG+TGG 0.652848 3_2:+52700006 Msa0410840:CDS
CACCACAATCAGGAAGTCAA+GGG 0.653000 3_2:+52701153 Msa0410840:CDS
TGGTAAAATGCAAAGAAACA+CGG 0.658146 3_2:-52704699 None:intergenic
CAAATGGAGATCTAGAAGAG+AGG 0.658480 3_2:+52700003 Msa0410840:CDS
GATGTGATGAAAACTTCTCG+TGG 0.660703 3_2:-52701201 None:intergenic
ATGCAAAGCGAGGAGCCAAG+AGG 0.661506 3_2:+52701511 Msa0410840:CDS
GGCTGTTGCTGAGAGACTCG+GGG 0.661927 3_2:-52701452 None:intergenic
GATCTCCATTTGAAACCAGG+TGG 0.662375 3_2:-52699992 None:intergenic
AAAATCTTGAGTAAAGTAGG+TGG 0.666162 3_2:-52699185 None:intergenic
AGAACAAGAGTTGATTGCCG+AGG 0.667261 3_2:+52703621 Msa0410840:CDS
GTATTCTGTCTGTTGAAGAG+GGG 0.671319 3_2:-52701314 None:intergenic
TTACCTAAAGGATTCTGCCG+GGG 0.674117 3_2:+52699874 Msa0410840:CDS
GGTAATAGTGAACTATACGA+TGG 0.677069 3_2:-52699856 None:intergenic
CATGTGCTATGTTATTGCAG+AGG 0.677836 3_2:+52699940 Msa0410840:CDS
ATAACTACAATTGACAACTG+TGG 0.684835 3_2:+52703694 Msa0410840:CDS
GATATGTATGAAGATAGGAG+GGG 0.694967 3_2:+52701102 Msa0410840:CDS
TTGTATGTGGGATCAAACCA+AGG 0.700037 3_2:-52701693 None:intergenic
TCTCGACCGTTAGAAGACTG+AGG 0.700818 3_2:-52701555 None:intergenic
TGTCAAGATAGTGGTATCCG+AGG 0.702081 3_2:+52701741 Msa0410840:CDS
GGTGATATTGAAGATGATGG+TGG 0.703886 3_2:+52704401 Msa0410840:CDS
TGATGGTGGTAACAACGACA+AGG 0.711985 3_2:+52704415 Msa0410840:CDS
AGATTGGTTAGGCGGCACGT+GGG 0.722200 3_2:+52704124 Msa0410840:CDS
GATGTGCATCCAATGTAGGG+GGG 0.722957 3_2:-52699028 None:intergenic
ACTCCACCATGCATCGACGG+CGG 0.726898 3_2:-52703650 None:intergenic
GTTGGTGATGATGCAAAGCG+AGG 0.733009 3_2:+52701501 Msa0410840:CDS
TTTGACTTAAGCAAACTGCG+TGG 0.766470 3_2:+52701378 Msa0410840:CDS
GTGTTCCCGAGTTAAGACTG+CGG 0.789633 3_2:-52701265 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCTGAAATATTAAAAA+TGG - chr3_2:52699494-52699513 None:intergenic 10.0%
!! ATTAAAAATTTGAATTCAAA+AGG - chr3_2:52703490-52703509 None:intergenic 10.0%
!! AAAATAATTCTATTACAAAT+TGG - chr3_2:52704045-52704064 None:intergenic 10.0%
!!! TTTGTAATAGAATTATTTTT+TGG + chr3_2:52704046-52704065 Msa0410840:intron 10.0%
!!! TGAAATATTAAAAATGGATT+TGG - chr3_2:52699488-52699507 None:intergenic 15.0%
!! ATGATCAAAACAATTATATA+TGG - chr3_2:52700129-52700148 None:intergenic 15.0%
!!! AAGTAAATTTATCAGTTTTT+TGG + chr3_2:52700585-52700604 Msa0410840:intron 15.0%
!! TAAGGAAAAATAAACAAAAA+GGG - chr3_2:52700717-52700736 None:intergenic 15.0%
!! ATAAGGAAAAATAAACAAAA+AGG - chr3_2:52700718-52700737 None:intergenic 15.0%
!!! CATTTTATACTATAAATTGA+TGG + chr3_2:52702536-52702555 Msa0410840:intron 15.0%
!! TAAATAACAGTAGATTATTT+AGG + chr3_2:52703233-52703252 Msa0410840:intron 15.0%
!!! TTTTTCTAGATATATTGTTA+GGG - chr3_2:52703383-52703402 None:intergenic 15.0%
!!! ATTTTTCTAGATATATTGTT+AGG - chr3_2:52703384-52703403 None:intergenic 15.0%
!! TAACAATATATCTAGAAAAA+TGG + chr3_2:52703383-52703402 Msa0410840:intron 15.0%
!!! TGAATATTTTGTTTTACATT+GGG - chr3_2:52703419-52703438 None:intergenic 15.0%
!!! TTGAATATTTTGTTTTACAT+TGG - chr3_2:52703420-52703439 None:intergenic 15.0%
!! TAATATCAGTTAATATAGTT+GGG - chr3_2:52704178-52704197 None:intergenic 15.0%
!! TAATGTAAATATTAGTTACA+AGG + chr3_2:52704851-52704870 Msa0410840:three_prime_UTR 15.0%
!! AATGTAAATATTAGTTACAA+GGG + chr3_2:52704852-52704871 Msa0410840:three_prime_UTR 15.0%
!!! GTTTTTTGTTAGATTTCATT+TGG + chr3_2:52699514-52699533 Msa0410840:five_prime_UTR 20.0%
!! TATAAAATGATGTCAAATAG+AGG - chr3_2:52700222-52700241 None:intergenic 20.0%
!! AAATAGAGAAAATGAGAATA+AGG - chr3_2:52700735-52700754 None:intergenic 20.0%
!! TTTCACATTTGCATAAATAA+TGG + chr3_2:52701919-52701938 Msa0410840:intron 20.0%
!! TTCACATTTGCATAAATAAT+GGG + chr3_2:52701920-52701939 Msa0410840:intron 20.0%
!! ATCAAGATAAAACCTTAAAT+AGG - chr3_2:52701950-52701969 None:intergenic 20.0%
!! CAACGAAAATATAGAAAAAT+AGG - chr3_2:52702367-52702386 None:intergenic 20.0%
!!! TTTACTTTGACTTAAACTTT+GGG - chr3_2:52702510-52702529 None:intergenic 20.0%
!!! TTTTACTTTGACTTAAACTT+TGG - chr3_2:52702511-52702530 None:intergenic 20.0%
!! ATTTAGCATAGAAAATGTAT+AGG + chr3_2:52702642-52702661 Msa0410840:intron 20.0%
!! AACTGATAAATATTCTATGT+TGG + chr3_2:52702692-52702711 Msa0410840:intron 20.0%
!!! CTTTTCTATTGTTTCTAAAT+AGG + chr3_2:52702775-52702794 Msa0410840:intron 20.0%
!!! TTTATAGTGCATCTTTTTTT+TGG + chr3_2:52702874-52702893 Msa0410840:intron 20.0%
!!! TTTTCTAGATATATTGTTAG+GGG - chr3_2:52703382-52703401 None:intergenic 20.0%
!!! TTAATCTTTTTATCCAAACA+GGG - chr3_2:52703784-52703803 None:intergenic 20.0%
!!! ATTAATCTTTTTATCCAAAC+AGG - chr3_2:52703785-52703804 None:intergenic 20.0%
!! ATTATGCTGAAAATAGTTTA+TGG + chr3_2:52703919-52703938 Msa0410840:intron 20.0%
!!! TAGAATTATTTTTTGGTATC+AGG + chr3_2:52704053-52704072 Msa0410840:intron 20.0%
!! AATATCAGTTAATATAGTTG+GGG - chr3_2:52704177-52704196 None:intergenic 20.0%
!! CTAATATCAGTTAATATAGT+TGG - chr3_2:52704179-52704198 None:intergenic 20.0%
! ATAGATTAGAATCGACAAAA+TGG - chr3_2:52699277-52699296 None:intergenic 25.0%
! AAGACATGTGTGTTTAATTA+AGG + chr3_2:52699538-52699557 Msa0410840:five_prime_UTR 25.0%
! AATGATGTTAGTATGCTATA+AGG + chr3_2:52699676-52699695 Msa0410840:five_prime_UTR 25.0%
! ACTTTGTGACAAATGAATTA+AGG + chr3_2:52699704-52699723 Msa0410840:five_prime_UTR 25.0%
! CTTTGTGACAAATGAATTAA+GGG + chr3_2:52699705-52699724 Msa0410840:five_prime_UTR 25.0%
! AGATTTCAAAAAGTGGTATA+GGG - chr3_2:52699742-52699761 None:intergenic 25.0%
! TAGATTTCAAAAAGTGGTAT+AGG - chr3_2:52699743-52699762 None:intergenic 25.0%
! TATAGTTCACTATTACCTAA+AGG + chr3_2:52699862-52699881 Msa0410840:CDS 25.0%
! TTATACTAAATAGCGTATTG+TGG + chr3_2:52700237-52700256 Msa0410840:intron 25.0%
! AATTATTGTTCAACCTACAA+TGG - chr3_2:52700380-52700399 None:intergenic 25.0%
! AAACAGCAACAATATTGATA+TGG + chr3_2:52700502-52700521 Msa0410840:intron 25.0%
! TTGGATTTCAAATTACAGTA+TGG + chr3_2:52700604-52700623 Msa0410840:intron 25.0%
!!! TCTCTTGATTTTTAGTTCAA+GGG - chr3_2:52700940-52700959 None:intergenic 25.0%
!!! TTCTCTTGATTTTTAGTTCA+AGG - chr3_2:52700941-52700960 None:intergenic 25.0%
! AATTTACAACTTGGAAAGTT+TGG - chr3_2:52701623-52701642 None:intergenic 25.0%
!!! TTTCATTTTTTGTCAGTACT+TGG + chr3_2:52701889-52701908 Msa0410840:intron 25.0%
!! GTTTTATCTTGATAGAAGAA+CGG + chr3_2:52701957-52701976 Msa0410840:intron 25.0%
!!! TATTCACTGTTTTTTCTGTA+TGG + chr3_2:52702185-52702204 Msa0410840:intron 25.0%
! CAACTGAAATATACTATTCT+TGG + chr3_2:52702277-52702296 Msa0410840:intron 25.0%
! AAATATACTATTCTTGGCAT+TGG + chr3_2:52702283-52702302 Msa0410840:intron 25.0%
! GAAAATTTGAAAAGTTGAGA+AGG - chr3_2:52702343-52702362 None:intergenic 25.0%
!! ACTATAAATTGATGGTAGAT+TGG + chr3_2:52702544-52702563 Msa0410840:intron 25.0%
! TCAAAACAAAATACCTTGAA+TGG + chr3_2:52702569-52702588 Msa0410840:intron 25.0%
! TTGGAAAAAAATGTAAGATG+TGG + chr3_2:52702711-52702730 Msa0410840:intron 25.0%
! GATAACGAAATACACATTTA+AGG + chr3_2:52703014-52703033 Msa0410840:intron 25.0%
!! ACACATTTAAGGTAAAAAGT+TGG + chr3_2:52703025-52703044 Msa0410840:intron 25.0%
!!! ATTCATTTTTCAAATGTAGC+TGG + chr3_2:52703300-52703319 Msa0410840:intron 25.0%
! ATTCTGACACATATTGTTAT+CGG - chr3_2:52703332-52703351 None:intergenic 25.0%
!!! AATCTTGATCTCCATTTTTT+AGG + chr3_2:52703507-52703526 Msa0410840:intron 25.0%
! AAGCTATCTTAGAAAGTTAA+TGG + chr3_2:52703895-52703914 Msa0410840:intron 25.0%
! AGCTATCTTAGAAAGTTAAT+GGG + chr3_2:52703896-52703915 Msa0410840:intron 25.0%
! ATTCTATTACAAATTGGAGA+AGG - chr3_2:52704039-52704058 None:intergenic 25.0%
! ACTTAAGAATATCTAGAGAT+TGG + chr3_2:52704108-52704127 Msa0410840:CDS 25.0%
! CAACATCATATGTTTATGAA+TGG - chr3_2:52704573-52704592 None:intergenic 25.0%
!! GATGACAAAAGCTTTATAAT+CGG - chr3_2:52704775-52704794 None:intergenic 25.0%
!!! GTTTTTTTCTTCCATTAAGT+AGG + chr3_2:52704954-52704973 Msa0410840:intron 25.0%
AAAATCTTGAGTAAAGTAGG+TGG - chr3_2:52699188-52699207 None:intergenic 30.0%
AGCAAAATCTTGAGTAAAGT+AGG - chr3_2:52699191-52699210 None:intergenic 30.0%
! TTTCCTTTTCTTTCTCAACT+TGG + chr3_2:52699239-52699258 Msa0410840:five_prime_UTR 30.0%
! TATCCAAGTTGAGAAAGAAA+AGG - chr3_2:52699245-52699264 None:intergenic 30.0%
ACTCAAAACTTCTTCTTGTT+GGG + chr3_2:52699302-52699321 Msa0410840:five_prime_UTR 30.0%
! TTCTAGATCAGTTTTCAGAA+GGG + chr3_2:52699335-52699354 Msa0410840:five_prime_UTR 30.0%
!! TACTGTGATTTTGAGGATTT+TGG + chr3_2:52699571-52699590 Msa0410840:five_prime_UTR 30.0%
! AAGCATCTTTGTATTTTCCT+AGG + chr3_2:52699609-52699628 Msa0410840:five_prime_UTR 30.0%
!!! ATGTAACTGAGGTTTTTTAG+AGG + chr3_2:52699650-52699669 Msa0410840:five_prime_UTR 30.0%
!!! TGTAACTGAGGTTTTTTAGA+GGG + chr3_2:52699651-52699670 Msa0410840:five_prime_UTR 30.0%
AATGAATTAAGGGTCTAGAT+TGG + chr3_2:52699715-52699734 Msa0410840:five_prime_UTR 30.0%
ACACACTAGATTTCAAAAAG+TGG - chr3_2:52699749-52699768 None:intergenic 30.0%
TTGTTAAATAGCAGCAATTG+CGG - chr3_2:52700350-52700369 None:intergenic 30.0%
TATTCATCAGAAACAGTAGA+TGG - chr3_2:52700758-52700777 None:intergenic 30.0%
! GATAATTTGGAGTTACTCTT+TGG - chr3_2:52700815-52700834 None:intergenic 30.0%
GATGTCTGAATTGGATAATT+TGG - chr3_2:52700828-52700847 None:intergenic 30.0%
! GAACCATTATGTTGCTTATT+TGG + chr3_2:52701077-52701096 Msa0410840:CDS 30.0%
AGAAAAAGGTTAAAGTAAGG+TGG + chr3_2:52701127-52701146 Msa0410840:CDS 30.0%
ATTAGGAGTAATCCAATGAT+GGG + chr3_2:52701594-52701613 Msa0410840:CDS 30.0%
TCCAAGTTGTAAATTATGCA+AGG + chr3_2:52701628-52701647 Msa0410840:CDS 30.0%
CATCTTGAACATCATCATAT+TGG - chr3_2:52701818-52701837 None:intergenic 30.0%
!! ATAATGGGTGTTCCTATTTA+AGG + chr3_2:52701935-52701954 Msa0410840:intron 30.0%
! CTGAATTCATTGATGATTGA+TGG + chr3_2:52702025-52702044 Msa0410840:intron 30.0%
ACTTTAAATAAGAGAAGCCT+TGG - chr3_2:52702152-52702171 None:intergenic 30.0%
! CTATTAGTTTAAGCTTAACG+TGG + chr3_2:52702217-52702236 Msa0410840:intron 30.0%
! CCAGATTTAATTTCCATTCA+AGG - chr3_2:52702585-52702604 None:intergenic 30.0%
CCTTGAATGGAAATTAAATC+TGG + chr3_2:52702582-52702601 Msa0410840:intron 30.0%
ACATGATATCTGTAGTTTCA+AGG + chr3_2:52702617-52702636 Msa0410840:intron 30.0%
! ATCTTTTTGTTCGAACTGAA+TGG + chr3_2:52703145-52703164 Msa0410840:intron 30.0%
ACTTCAAAGAAATGATCAAG+CGG - chr3_2:52703202-52703221 None:intergenic 30.0%
! TTTTCAAATGTAGCTGGTAA+TGG + chr3_2:52703306-52703325 Msa0410840:intron 30.0%
GATAACAATATGTGTCAGAA+TGG + chr3_2:52703331-52703350 Msa0410840:intron 30.0%
ATGGCGAGTAAAATATGATA+TGG + chr3_2:52703350-52703369 Msa0410840:intron 30.0%
GAGTAATTGTTATGCATCAA+GGG - chr3_2:52703462-52703481 None:intergenic 30.0%
AGAGTAATTGTTATGCATCA+AGG - chr3_2:52703463-52703482 None:intergenic 30.0%
ATAACTACAATTGACAACTG+TGG + chr3_2:52703694-52703713 Msa0410840:CDS 30.0%
! AATGTTCAAGTTTACTTTCC+TGG + chr3_2:52703724-52703743 Msa0410840:CDS 30.0%
AAGCACTTGTGAAATTGTTT+AGG - chr3_2:52703961-52703980 None:intergenic 30.0%
! AGAATATCTAGAGATTGGTT+AGG + chr3_2:52704113-52704132 Msa0410840:CDS 30.0%
AATATAGTTGGGGTTATATC+AGG - chr3_2:52704167-52704186 None:intergenic 30.0%
AGTTTCTCTTCAACAATATC+AGG - chr3_2:52704305-52704324 None:intergenic 30.0%
GAAGAGAAACTTGTATATTG+TGG + chr3_2:52704314-52704333 Msa0410840:CDS 30.0%
!! TATTGTGGTGTTACTGAAAA+TGG + chr3_2:52704329-52704348 Msa0410840:CDS 30.0%
!! ATTGTGGTGTTACTGAAAAT+GGG + chr3_2:52704330-52704349 Msa0410840:CDS 30.0%
ATCTTCAATATCACCAACTT+GGG - chr3_2:52704396-52704415 None:intergenic 30.0%
! GTGTAAAAGTGTAGAACTAA+TGG + chr3_2:52704517-52704536 Msa0410840:CDS 30.0%
! TAGTTTTCAATTGCAAACTG+CGG + chr3_2:52704600-52704619 Msa0410840:three_prime_UTR 30.0%
TGGTAAAATGCAAAGAAACA+CGG - chr3_2:52704702-52704721 None:intergenic 30.0%
TATTAGTTACAAGGGATATG+TGG + chr3_2:52704860-52704879 Msa0410840:three_prime_UTR 30.0%
GGTTGAAATTGCCATAGAAA+TGG - chr3_2:52699075-52699094 None:intergenic 35.0%
AGAAGAAGAAGAAAGAGGAT+AGG - chr3_2:52699096-52699115 None:intergenic 35.0%
AGAGAAGAAGAAGAAGAAAG+AGG - chr3_2:52699101-52699120 None:intergenic 35.0%
AATCGACAAAATGGCCAAAA+GGG - chr3_2:52699268-52699287 None:intergenic 35.0%
CACTCAAAACTTCTTCTTGT+TGG + chr3_2:52699301-52699320 Msa0410840:five_prime_UTR 35.0%
! CTTCTAGATCAGTTTTCAGA+AGG + chr3_2:52699334-52699353 Msa0410840:five_prime_UTR 35.0%
TCTGATCTGATTGTAGACAT+AGG + chr3_2:52699364-52699383 Msa0410840:five_prime_UTR 35.0%
CTCAAAATCACAGTACAATC+AGG - chr3_2:52699566-52699585 None:intergenic 35.0%
! CTGATTGTACTGTGATTTTG+AGG + chr3_2:52699564-52699583 Msa0410840:five_prime_UTR 35.0%
TCTTAGGTTTGATGTAACTG+AGG + chr3_2:52699639-52699658 Msa0410840:five_prime_UTR 35.0%
ATCTAGTGTGTATCTAGTGT+TGG + chr3_2:52699758-52699777 Msa0410840:five_prime_UTR 35.0%
GGTAATAGTGAACTATACGA+TGG - chr3_2:52699859-52699878 None:intergenic 35.0%
TATTACCTAAAGGATTCTGC+CGG + chr3_2:52699872-52699891 Msa0410840:CDS 35.0%
GTTCTTGGAAATTTGTGGAA+TGG + chr3_2:52699964-52699983 Msa0410840:CDS 35.0%
AAATTCCACCTGGTTTCAAA+TGG + chr3_2:52699987-52700006 Msa0410840:CDS 35.0%
CATCTACATGAAGATAGAAG+TGG + chr3_2:52700061-52700080 Msa0410840:CDS 35.0%
TAACAACACTTGACCATTGT+AGG + chr3_2:52700364-52700383 Msa0410840:intron 35.0%
TATCCAATTCAGACATCGTT+TGG + chr3_2:52700831-52700850 Msa0410840:CDS 35.0%
!!! TATCCTGCTTTTTGCAGAAA+TGG + chr3_2:52700893-52700912 Msa0410840:CDS 35.0%
!!! ATCCTGCTTTTTGCAGAAAT+GGG + chr3_2:52700894-52700913 Msa0410840:CDS 35.0%
!!! TCAATCCTTTGTTTTCGTCA+TGG + chr3_2:52701044-52701063 Msa0410840:CDS 35.0%
!!! CAATCCTTTGTTTTCGTCAT+GGG + chr3_2:52701045-52701064 Msa0410840:CDS 35.0%
CCTCCAAATAAGCAACATAA+TGG - chr3_2:52701083-52701102 None:intergenic 35.0%
! CCATTATGTTGCTTATTTGG+AGG + chr3_2:52701080-52701099 Msa0410840:CDS 35.0%
TGGAGGATATGTATGAAGAT+AGG + chr3_2:52701097-52701116 Msa0410840:CDS 35.0%
AGGATATGTATGAAGATAGG+AGG + chr3_2:52701100-52701119 Msa0410840:CDS 35.0%
GGATATGTATGAAGATAGGA+GGG + chr3_2:52701101-52701120 Msa0410840:CDS 35.0%
GATATGTATGAAGATAGGAG+GGG + chr3_2:52701102-52701121 Msa0410840:CDS 35.0%
ATATGTATGAAGATAGGAGG+GGG + chr3_2:52701103-52701122 Msa0410840:CDS 35.0%
GGCAGAAAAAGGTTAAAGTA+AGG + chr3_2:52701124-52701143 Msa0410840:CDS 35.0%
TGTATTCTGTCTGTTGAAGA+GGG - chr3_2:52701318-52701337 None:intergenic 35.0%
ATGTATTCTGTCTGTTGAAG+AGG - chr3_2:52701319-52701338 None:intergenic 35.0%
ACAGAATACATCTGTGCTTT+AGG + chr3_2:52701328-52701347 Msa0410840:CDS 35.0%
! CTGTGCTTTAGGCAATTAAA+AGG + chr3_2:52701339-52701358 Msa0410840:CDS 35.0%
GAAGATGAAGATTTGGATGT+TGG + chr3_2:52701483-52701502 Msa0410840:CDS 35.0%
GATTAGGAGTAATCCAATGA+TGG + chr3_2:52701593-52701612 Msa0410840:CDS 35.0%
AAAGTTTGGTATCCCATCAT+TGG - chr3_2:52701609-52701628 None:intergenic 35.0%
GCCTTGCATAATTTACAACT+TGG - chr3_2:52701632-52701651 None:intergenic 35.0%
AGTTGTAAATTATGCAAGGC+CGG + chr3_2:52701632-52701651 Msa0410840:CDS 35.0%
! GAGATTGCTTTCTCTGAAAA+AGG + chr3_2:52701659-52701678 Msa0410840:CDS 35.0%
! AAAAGGTTGATTGTCAACCT+TGG + chr3_2:52701676-52701695 Msa0410840:CDS 35.0%
TTGTCATCAACCTTGTATGT+GGG - chr3_2:52701708-52701727 None:intergenic 35.0%
GATGATGTTCAAGATGAAGA+TGG + chr3_2:52701822-52701841 Msa0410840:CDS 35.0%
! TATACTATTCTTGGCATTGG+CGG + chr3_2:52702286-52702305 Msa0410840:intron 35.0%
!! AAGAGTGTCTCATACATTCA+TGG - chr3_2:52702818-52702837 None:intergenic 35.0%
TATTAGAGACCAAGAATCAG+TGG - chr3_2:52703093-52703112 None:intergenic 35.0%
TCATGTAGTTTAACTGTGCT+TGG + chr3_2:52703170-52703189 Msa0410840:intron 35.0%
!!! TGATCTCCATTTTTTAGGAG+TGG + chr3_2:52703512-52703531 Msa0410840:intron 35.0%
TGTCTCATCTCAAGTTTATC+AGG - chr3_2:52703562-52703581 None:intergenic 35.0%
ATCAACTCTTGTTCTTCAAG+AGG - chr3_2:52703616-52703635 None:intergenic 35.0%
! TATCCAAACAGGGCATTATA+GGG - chr3_2:52703774-52703793 None:intergenic 35.0%
! TTATCCAAACAGGGCATTAT+AGG - chr3_2:52703775-52703794 None:intergenic 35.0%
GCAAATGACAGTACATAAGA+AGG + chr3_2:52704085-52704104 Msa0410840:CDS 35.0%
! ATATCTAGAGATTGGTTAGG+CGG + chr3_2:52704116-52704135 Msa0410840:CDS 35.0%
! TCTGCATCTTTTTCCAAAGA+TGG - chr3_2:52704227-52704246 None:intergenic 35.0%
AAAAAGATGCAGACTCAGTT+GGG + chr3_2:52704234-52704253 Msa0410840:CDS 35.0%
!! TTGTGGTGTTACTGAAAATG+GGG + chr3_2:52704331-52704350 Msa0410840:CDS 35.0%
!!! ACTTGGGTACTTTTTTCTGA+AGG - chr3_2:52704380-52704399 None:intergenic 35.0%
!! TCAGAAAAAAGTACCCAAGT+TGG + chr3_2:52704380-52704399 Msa0410840:CDS 35.0%
CATCTTCAATATCACCAACT+TGG - chr3_2:52704397-52704416 None:intergenic 35.0%
!! GTTGGTGATATTGAAGATGA+TGG + chr3_2:52704398-52704417 Msa0410840:CDS 35.0%
TAATGAGAATAGCGATGCAA+AGG + chr3_2:52704472-52704491 Msa0410840:CDS 35.0%
CAGTGTTAGAGATCTTTGAA+TGG + chr3_2:52704665-52704684 Msa0410840:three_prime_UTR 35.0%
! TGCATTTTACCACAATACGA+AGG + chr3_2:52704710-52704729 Msa0410840:three_prime_UTR 35.0%
TCAACACTGTACATCTATGA+AGG - chr3_2:52704915-52704934 None:intergenic 35.0%
TTCTTCCATTAAGTAGGTTG+TGG + chr3_2:52704960-52704979 Msa0410840:intron 35.0%
TTCTACCACAACCTACTTAA+TGG - chr3_2:52704968-52704987 None:intergenic 35.0%
TGCAACTCTCTCCATTTCTA+TGG + chr3_2:52699061-52699080 Msa0410840:five_prime_UTR 40.0%
! TCTCAACTTGGATACCCTTT+TGG + chr3_2:52699251-52699270 Msa0410840:five_prime_UTR 40.0%
GAATCGACAAAATGGCCAAA+AGG - chr3_2:52699269-52699288 None:intergenic 40.0%
! GACATAGGCTTTTGTAGCTT+TGG + chr3_2:52699379-52699398 Msa0410840:five_prime_UTR 40.0%
TTTCCTAGGTAGCTGTTCTT+AGG + chr3_2:52699623-52699642 Msa0410840:five_prime_UTR 40.0%
AAACCTAAGAACAGCTACCT+AGG - chr3_2:52699629-52699648 None:intergenic 40.0%
! GATAGACGATCTGTGTTTTG+TGG + chr3_2:52699799-52699818 Msa0410840:CDS 40.0%
! ACGATCTGTGTTTTGTGGAA+TGG + chr3_2:52699804-52699823 Msa0410840:CDS 40.0%
!! CATTTTGTTTCACAAGAGCG+TGG + chr3_2:52699833-52699852 Msa0410840:CDS 40.0%
ATTACCTAAAGGATTCTGCC+GGG + chr3_2:52699873-52699892 Msa0410840:CDS 40.0%
GAATCATTCCTTGCAGTTGT+CGG + chr3_2:52699896-52699915 Msa0410840:CDS 40.0%
CATGTGCTATGTTATTGCAG+AGG + chr3_2:52699940-52699959 Msa0410840:CDS 40.0%
TGTTATTGCAGAGGAGTTCT+TGG + chr3_2:52699949-52699968 Msa0410840:CDS 40.0%
GAGGAGTTCTTGGAAATTTG+TGG + chr3_2:52699959-52699978 Msa0410840:CDS 40.0%
! CTAGATCTCCATTTGAAACC+AGG - chr3_2:52699998-52700017 None:intergenic 40.0%
CAAATGGAGATCTAGAAGAG+AGG + chr3_2:52700003-52700022 Msa0410840:CDS 40.0%
TCACTTAGTGGGATAAGACT+TGG + chr3_2:52700294-52700313 Msa0410840:intron 40.0%
AGTATGGCCTGCTCATAATT+TGG + chr3_2:52700620-52700639 Msa0410840:intron 40.0%
CTAGCTCATAAGATCGCAAA+TGG + chr3_2:52700645-52700664 Msa0410840:CDS 40.0%
CAAAGAAGTTAGTGCACGAA+TGG + chr3_2:52700674-52700693 Msa0410840:CDS 40.0%
TGACCAAACGATGTCTGAAT+TGG - chr3_2:52700837-52700856 None:intergenic 40.0%
AATTCAGACATCGTTTGGTC+AGG + chr3_2:52700836-52700855 Msa0410840:CDS 40.0%
ATCCCATTTCTGCAAAAAGC+AGG - chr3_2:52700899-52700918 None:intergenic 40.0%
TGCAGAAATGGGATCCAAAT+TGG + chr3_2:52700905-52700924 Msa0410840:CDS 40.0%
GCAGAAATGGGATCCAAATT+GGG + chr3_2:52700906-52700925 Msa0410840:CDS 40.0%
CAGAAATGGGATCCAAATTG+GGG + chr3_2:52700907-52700926 Msa0410840:CDS 40.0%
ATTGCCCATGACGAAAACAA+AGG - chr3_2:52701052-52701071 None:intergenic 40.0%
!! TTTGTTTTCGTCATGGGCAA+TGG + chr3_2:52701051-52701070 Msa0410840:CDS 40.0%
GATGTGATGAAAACTTCTCG+TGG - chr3_2:52701204-52701223 None:intergenic 40.0%
GTTGAAGAGGGGGAAAAATA+AGG - chr3_2:52701306-52701325 None:intergenic 40.0%
TATTCTGTCTGTTGAAGAGG+GGG - chr3_2:52701316-52701335 None:intergenic 40.0%
GTATTCTGTCTGTTGAAGAG+GGG - chr3_2:52701317-52701336 None:intergenic 40.0%
! CGCAGTTTGCTTAAGTCAAA+GGG - chr3_2:52701378-52701397 None:intergenic 40.0%
! ACGCAGTTTGCTTAAGTCAA+AGG - chr3_2:52701379-52701398 None:intergenic 40.0%
! TTTGACTTAAGCAAACTGCG+TGG + chr3_2:52701378-52701397 Msa0410840:CDS 40.0%
AATCTTCATCTTCTCCTGTG+AGG - chr3_2:52701476-52701495 None:intergenic 40.0%
CACAGGAGAAGATGAAGATT+TGG + chr3_2:52701476-52701495 Msa0410840:CDS 40.0%
!! AAGAGGAGTAGAAGTGCTAA+GGG + chr3_2:52701528-52701547 Msa0410840:CDS 40.0%
! AAGGGGTTAGGAAGTTGATT+AGG + chr3_2:52701577-52701596 Msa0410840:CDS 40.0%
TAAATTATGCAAGGCCGGAT+AGG + chr3_2:52701637-52701656 Msa0410840:CDS 40.0%
AGAGAAAGCAATCTCCTATC+CGG - chr3_2:52701654-52701673 None:intergenic 40.0%
TTGTATGTGGGATCAAACCA+AGG - chr3_2:52701696-52701715 None:intergenic 40.0%
! TTGGTTTGATCCCACATACA+AGG + chr3_2:52701695-52701714 Msa0410840:CDS 40.0%
CTTGTCATCAACCTTGTATG+TGG - chr3_2:52701709-52701728 None:intergenic 40.0%
!! CAAGGTTGATGACAAGATAG+AGG + chr3_2:52701713-52701732 Msa0410840:CDS 40.0%
GTTCAGGTGTACAATTGTAC+AGG + chr3_2:52701770-52701789 Msa0410840:CDS 40.0%
GTACAATTGTACAGGTAGCT+CGG + chr3_2:52701778-52701797 Msa0410840:CDS 40.0%
GTTCAAGATGAAGATGGAAG+TGG + chr3_2:52701828-52701847 Msa0410840:CDS 40.0%
AGATGGAAGTGGAAATCTTG+AGG + chr3_2:52701839-52701858 Msa0410840:CDS 40.0%
GAGGGAAAAAATTTGTGTCG+TGG - chr3_2:52702091-52702110 None:intergenic 40.0%
!!! TTTTTTCCCTCCTAGTCATG+TGG + chr3_2:52702100-52702119 Msa0410840:intron 40.0%
CTTGGAACAAGTACAACAAC+TGG - chr3_2:52702134-52702153 None:intergenic 40.0%
CAGTTGTTGTACTTGTTCCA+AGG + chr3_2:52702132-52702151 Msa0410840:intron 40.0%
AACGTGGAATTTAGACATGC+TGG + chr3_2:52702233-52702252 Msa0410840:intron 40.0%
!! TCCAAGGCTTAATTTTGAGG+GGG - chr3_2:52702397-52702416 None:intergenic 40.0%
! GTCCAAGGCTTAATTTTGAG+GGG - chr3_2:52702398-52702417 None:intergenic 40.0%
! GGTCCAAGGCTTAATTTTGA+GGG - chr3_2:52702399-52702418 None:intergenic 40.0%
! TGGTCCAAGGCTTAATTTTG+AGG - chr3_2:52702400-52702419 None:intergenic 40.0%
AGTCAATGCAATATGGTCCA+AGG - chr3_2:52702413-52702432 None:intergenic 40.0%
AGGAGACAGTCAATGCAATA+TGG - chr3_2:52702420-52702439 None:intergenic 40.0%
!! CAACTTTTTCCTAGTGAGAG+AGG - chr3_2:52702440-52702459 None:intergenic 40.0%
CTCTCTCACTAGGAAAAAGT+TGG + chr3_2:52702438-52702457 Msa0410840:intron 40.0%
! AAATTTTGAACCCCCAACTC+AGG + chr3_2:52703055-52703074 Msa0410840:intron 40.0%
! AATTTTGAACCCCCAACTCA+GGG + chr3_2:52703056-52703075 Msa0410840:intron 40.0%
CTGAAATCGCTGTATAAGAC+AGG - chr3_2:52703259-52703278 None:intergenic 40.0%
AGGGATCCACTCCTAAAAAA+TGG - chr3_2:52703521-52703540 None:intergenic 40.0%
CATCTCAAGTTTATCAGGCT+TGG - chr3_2:52703557-52703576 None:intergenic 40.0%
AAACTTGAGATGAGACAACC+TGG + chr3_2:52703565-52703584 Msa0410840:CDS 40.0%
AACTCTTGTTCTTCAAGAGG+TGG - chr3_2:52703613-52703632 None:intergenic 40.0%
GTGACAATTAACAGCTTACC+AGG - chr3_2:52703745-52703764 None:intergenic 40.0%
TTTCCCTATAATGCCCTGTT+TGG + chr3_2:52703768-52703787 Msa0410840:intron 40.0%
GAAAAAGATGCAGACTCAGT+TGG + chr3_2:52704233-52704252 Msa0410840:CDS 40.0%
GGTTTATTAGACTTCTCAGC+AGG - chr3_2:52704284-52704303 None:intergenic 40.0%
CTGAAGGAGGTTTATCATCT+TGG - chr3_2:52704364-52704383 None:intergenic 40.0%
!!! TGGGTACTTTTTTCTGAAGG+AGG - chr3_2:52704377-52704396 None:intergenic 40.0%
! GGTGATATTGAAGATGATGG+TGG + chr3_2:52704401-52704420 Msa0410840:CDS 40.0%
ATAGCGATGCAAAGGTGATT+CGG + chr3_2:52704480-52704499 Msa0410840:CDS 40.0%
! AAGCTTTATAATCGGCACCA+AGG - chr3_2:52704767-52704786 None:intergenic 40.0%
AAGTAGGTTGTGGTAGAAAG+AGG + chr3_2:52704970-52704989 Msa0410840:intron 40.0%
AGATGTGCATCCAATGTAGG+GGG - chr3_2:52699032-52699051 None:intergenic 45.0%
CAGATGTGCATCCAATGTAG+GGG - chr3_2:52699033-52699052 None:intergenic 45.0%
GCAGATGTGCATCCAATGTA+GGG - chr3_2:52699034-52699053 None:intergenic 45.0%
AGCAGATGTGCATCCAATGT+AGG - chr3_2:52699035-52699054 None:intergenic 45.0%
GAAATGGAGAGAGTTGCAGA+GGG - chr3_2:52699059-52699078 None:intergenic 45.0%
AGAAATGGAGAGAGTTGCAG+AGG - chr3_2:52699060-52699079 None:intergenic 45.0%
AGTGGAAGAGTGGAGAAAGA+GGG - chr3_2:52699158-52699177 None:intergenic 45.0%
! AAAGTAGGTGGTGTTGAGAG+TGG - chr3_2:52699176-52699195 None:intergenic 45.0%
! AGAAGATCCTGTCTTTTCCG+AGG + chr3_2:52699429-52699448 Msa0410840:five_prime_UTR 45.0%
TTTCCGAGGCTTGTGAGTTT+AGG + chr3_2:52699443-52699462 Msa0410840:five_prime_UTR 45.0%
TCACCTAAACTCACAAGCCT+CGG - chr3_2:52699449-52699468 None:intergenic 45.0%
TTACCTAAAGGATTCTGCCG+GGG + chr3_2:52699874-52699893 Msa0410840:CDS 45.0%
AACTGCAAGGAATGATTCCC+CGG - chr3_2:52699894-52699913 None:intergenic 45.0%
TGTGGAATGGAAATTCCACC+TGG + chr3_2:52699977-52699996 Msa0410840:CDS 45.0%
! GATCTCCATTTGAAACCAGG+TGG - chr3_2:52699995-52700014 None:intergenic 45.0%
ATGGAGATCTAGAAGAGAGG+TGG + chr3_2:52700006-52700025 Msa0410840:CDS 45.0%
CTAGAAGAGAGGTGGTTGAT+TGG + chr3_2:52700014-52700033 Msa0410840:CDS 45.0%
TTTGCGACGCTATCACTTAG+TGG + chr3_2:52700282-52700301 Msa0410840:intron 45.0%
TTGCGACGCTATCACTTAGT+GGG + chr3_2:52700283-52700302 Msa0410840:intron 45.0%
GCTAGTGCCAAATTATGAGC+AGG - chr3_2:52700630-52700649 None:intergenic 45.0%
AGAAGTTAGTGCACGAATGG+TGG + chr3_2:52700677-52700696 Msa0410840:CDS 45.0%
ACGCATGCATACTCTTTCTC+AGG + chr3_2:52700784-52700803 Msa0410840:intron 45.0%
AAGGGCTTCTTACCCCAATT+TGG - chr3_2:52700922-52700941 None:intergenic 45.0%
AAGGTGGTTTCACCACAATC+AGG + chr3_2:52701143-52701162 Msa0410840:CDS 45.0%
TCACCACAATCAGGAAGTCA+AGG + chr3_2:52701152-52701171 Msa0410840:CDS 45.0%
CACCACAATCAGGAAGTCAA+GGG + chr3_2:52701153-52701172 Msa0410840:CDS 45.0%
CGTGGATGAGTATTTCGTAC+TGG - chr3_2:52701186-52701205 None:intergenic 45.0%
ATCAGTGCAGAGTGTGTTGA+TGG + chr3_2:52701237-52701256 Msa0410840:CDS 45.0%
GTGGATAGTATCAACGTGCA+AGG - chr3_2:52701430-52701449 None:intergenic 45.0%
CTTAGCACTTCTACTCCTCT+TGG - chr3_2:52701529-52701548 None:intergenic 45.0%
!! CAAGAGGAGTAGAAGTGCTA+AGG + chr3_2:52701527-52701546 Msa0410840:CDS 45.0%
GGTTCTCCTCAGTCTTCTAA+CGG + chr3_2:52701549-52701568 Msa0410840:CDS 45.0%
AGTCTTCTAACGGTCGAGAA+GGG + chr3_2:52701559-52701578 Msa0410840:CDS 45.0%
! GAGGTACTCTGTCAAGATAG+TGG + chr3_2:52701732-52701751 Msa0410840:CDS 45.0%
! TGTCAAGATAGTGGTATCCG+AGG + chr3_2:52701741-52701760 Msa0410840:CDS 45.0%
TTGCTACCACATGACTAGGA+GGG - chr3_2:52702109-52702128 None:intergenic 45.0%
ATTGCTACCACATGACTAGG+AGG - chr3_2:52702110-52702129 None:intergenic 45.0%
GGAATTGCTACCACATGACT+AGG - chr3_2:52702113-52702132 None:intergenic 45.0%
ACCCCCTCAAAATTAAGCCT+TGG + chr3_2:52702393-52702412 Msa0410840:intron 45.0%
!! GTGGATCCCTGCTTTTAAGT+TGG + chr3_2:52703531-52703550 Msa0410840:CDS 45.0%
GCTTGGCCAACTTAAAAGCA+GGG - chr3_2:52703540-52703559 None:intergenic 45.0%
! AGAACAAGAGTTGATTGCCG+AGG + chr3_2:52703621-52703640 Msa0410840:CDS 45.0%
! CGGCACGTGGGTTAATATAA+AGG + chr3_2:52704136-52704155 Msa0410840:CDS 45.0%
CCAAAGATGGAGACAAAGTG+AGG - chr3_2:52704214-52704233 None:intergenic 45.0%
CCTCACTTTGTCTCCATCTT+TGG + chr3_2:52704211-52704230 Msa0410840:CDS 45.0%
!! TGATGGTGGTAACAACGACA+AGG + chr3_2:52704415-52704434 Msa0410840:CDS 45.0%
TGCTGAGAACCTTCGTATTG+TGG - chr3_2:52704722-52704741 None:intergenic 45.0%
! GCAACCGCAATTTGAAACCT+TGG + chr3_2:52704747-52704766 Msa0410840:three_prime_UTR 45.0%
GGCACCAAGGTTTCAAATTG+CGG - chr3_2:52704754-52704773 None:intergenic 45.0%
GTTGTGGTAGAAAGAGGTTG+TGG + chr3_2:52704976-52704995 Msa0410840:intron 45.0%
!! ATTTGTAAAATAATAATATA+AGG + chr3_2:52700397-52700416 Msa0410840:intron 5.0%
GATGTGCATCCAATGTAGGG+GGG - chr3_2:52699031-52699050 None:intergenic 50.0%
GAGTGGAAGAGTGGAGAAAG+AGG - chr3_2:52699159-52699178 None:intergenic 50.0%
! TGGTGTTGAGAGTGGAAGAG+TGG - chr3_2:52699168-52699187 None:intergenic 50.0%
TCACAAGCCTCGGAAAAGAC+AGG - chr3_2:52699439-52699458 None:intergenic 50.0%
ATTCCCCGGCAGAATCCTTT+AGG - chr3_2:52699880-52699899 None:intergenic 50.0%
GCAGCAATACTGATGCGTAG+CGG - chr3_2:52700194-52700213 None:intergenic 50.0%
!! TGCACGAATGGTGGATGACA+AGG + chr3_2:52700686-52700705 Msa0410840:CDS 50.0%
AGATAGGAGGGGGCAGAAAA+AGG + chr3_2:52701113-52701132 Msa0410840:CDS 50.0%
CACCCTTGACTTCCTGATTG+TGG - chr3_2:52701158-52701177 None:intergenic 50.0%
GTGTTCCCGAGTTAAGACTG+CGG - chr3_2:52701268-52701287 None:intergenic 50.0%
ACGTGCAAGGAAGAAAGAGC+TGG - chr3_2:52701417-52701436 None:intergenic 50.0%
!! GTTGGTGATGATGCAAAGCG+AGG + chr3_2:52701501-52701520 Msa0410840:CDS 50.0%
TCTCGACCGTTAGAAGACTG+AGG - chr3_2:52701558-52701577 None:intergenic 50.0%
CAGTCTTCTAACGGTCGAGA+AGG + chr3_2:52701558-52701577 Msa0410840:CDS 50.0%
GTCTTCTAACGGTCGAGAAG+GGG + chr3_2:52701560-52701579 Msa0410840:CDS 50.0%
TGACTGTCTCCTCTCTCACT+AGG + chr3_2:52702428-52702447 Msa0410840:intron 50.0%
!! TTGGCAACGCCACTGATTCT+TGG + chr3_2:52703081-52703100 Msa0410840:intron 50.0%
GGCTTGGCCAACTTAAAAGC+AGG - chr3_2:52703541-52703560 None:intergenic 50.0%
TTGAGATGAGACAACCTGGC+CGG + chr3_2:52703569-52703588 Msa0410840:CDS 50.0%
TGTTCTTCAAGAGGTGGAGC+TGG - chr3_2:52703607-52703626 None:intergenic 50.0%
! CAAGAGTTGATTGCCGAGGT+TGG + chr3_2:52703625-52703644 Msa0410840:CDS 50.0%
ATCACTCCACCATGCATCGA+CGG - chr3_2:52703656-52703675 None:intergenic 50.0%
! TCGATGCATGGTGGAGTGAT+GGG + chr3_2:52703656-52703675 Msa0410840:CDS 50.0%
GACAAGGACAACAGTGAGAG+TGG + chr3_2:52704431-52704450 Msa0410840:CDS 50.0%
!! GAAAGAGGGCGTTGAGTGAG+AGG - chr3_2:52699144-52699163 None:intergenic 55.0%
!! TCTCAGTGCCGACAACTGCA+AGG - chr3_2:52699907-52699926 None:intergenic 55.0%
! TTGCAGTTGTCGGCACTGAG+AGG + chr3_2:52699906-52699925 Msa0410840:CDS 55.0%
TCGTTTGGTCAGGACTTGCG+TGG + chr3_2:52700846-52700865 Msa0410840:CDS 55.0%
TCAGGACTTGCGTGGACATG+TGG + chr3_2:52700854-52700873 Msa0410840:CDS 55.0%
GACCTGCCGCAGTCTTAACT+CGG + chr3_2:52701259-52701278 Msa0410840:CDS 55.0%
ACCTGCCGCAGTCTTAACTC+GGG + chr3_2:52701260-52701279 Msa0410840:CDS 55.0%
AGGCTGTTGCTGAGAGACTC+GGG - chr3_2:52701456-52701475 None:intergenic 55.0%
GAGGCTGTTGCTGAGAGACT+CGG - chr3_2:52701457-52701476 None:intergenic 55.0%
TCTCTCAGCAACAGCCTCAC+AGG + chr3_2:52701459-52701478 Msa0410840:CDS 55.0%
ATGCAAAGCGAGGAGCCAAG+AGG + chr3_2:52701511-52701530 Msa0410840:CDS 55.0%
CTAACGGTCGAGAAGGGGTT+AGG + chr3_2:52701565-52701584 Msa0410840:CDS 55.0%
ATAGTGGTATCCGAGGCTGC+TGG + chr3_2:52701748-52701767 Msa0410840:CDS 55.0%
TACACCTGAACCAGCAGCCT+CGG - chr3_2:52701761-52701780 None:intergenic 55.0%
! TTGCCAAGACCCTGAGTTGG+GGG - chr3_2:52703068-52703087 None:intergenic 55.0%
GTTGCCAAGACCCTGAGTTG+GGG - chr3_2:52703069-52703088 None:intergenic 55.0%
CGTTGCCAAGACCCTGAGTT+GGG - chr3_2:52703070-52703089 None:intergenic 55.0%
! GTCGATGCATGGTGGAGTGA+TGG + chr3_2:52703655-52703674 Msa0410840:CDS 55.0%
! ATGCATGGTGGAGTGATGGG+TGG + chr3_2:52703659-52703678 Msa0410840:CDS 55.0%
!! ATGGTGGAGTGATGGGTGGT+GGG + chr3_2:52703663-52703682 Msa0410840:CDS 55.0%
! AGATTGGTTAGGCGGCACGT+GGG + chr3_2:52704124-52704143 Msa0410840:CDS 55.0%
CATCCAATGTAGGGGGGAGG+AGG - chr3_2:52699025-52699044 None:intergenic 60.0%
GTGCATCCAATGTAGGGGGG+AGG - chr3_2:52699028-52699047 None:intergenic 60.0%
!! GAGGGCGTTGAGTGAGAGGT+TGG - chr3_2:52699140-52699159 None:intergenic 60.0%
TCCCGAGTTAAGACTGCGGC+AGG - chr3_2:52701264-52701283 None:intergenic 60.0%
TGCTGAGAGACTCGGGGTTG+TGG - chr3_2:52701449-52701468 None:intergenic 60.0%
GGCTGTTGCTGAGAGACTCG+GGG - chr3_2:52701455-52701474 None:intergenic 60.0%
!! GTATCCGAGGCTGCTGGTTC+AGG + chr3_2:52701754-52701773 Msa0410840:CDS 60.0%
! GCATTGGCGGAGCCACATAG+TGG + chr3_2:52702299-52702318 Msa0410840:intron 60.0%
TGAACCCCCTGGCCACTATG+TGG - chr3_2:52702314-52702333 None:intergenic 60.0%
! GAAGGTGCAGTTGAACCCCC+TGG - chr3_2:52702325-52702344 None:intergenic 60.0%
GAACCCCCAACTCAGGGTCT+TGG + chr3_2:52703062-52703081 Msa0410840:intron 60.0%
GCGTTGCCAAGACCCTGAGT+TGG - chr3_2:52703071-52703090 None:intergenic 60.0%
! AAGAGGTGGAGCTGGCCTGA+TGG - chr3_2:52703599-52703618 None:intergenic 60.0%
ATCGACGGCGGTTCCAACCT+CGG - chr3_2:52703641-52703660 None:intergenic 60.0%
TTGGAACCGCCGTCGATGCA+TGG + chr3_2:52703644-52703663 Msa0410840:CDS 60.0%
! ACTCCACCATGCATCGACGG+CGG - chr3_2:52703653-52703672 None:intergenic 60.0%
!! CATGGTGGAGTGATGGGTGG+TGG + chr3_2:52703662-52703681 Msa0410840:CDS 60.0%
!! TGGAGTGATGGGTGGTGGGA+GGG + chr3_2:52703667-52703686 Msa0410840:CDS 60.0%
! GAGATTGGTTAGGCGGCACG+TGG + chr3_2:52704123-52704142 Msa0410840:CDS 60.0%
GCGGAGCCACATAGTGGCCA+GGG + chr3_2:52702305-52702324 Msa0410840:intron 65.0%
CGGAGCCACATAGTGGCCAG+GGG + chr3_2:52702306-52702325 Msa0410840:intron 65.0%
GGAGCCACATAGTGGCCAGG+GGG + chr3_2:52702307-52702326 Msa0410840:intron 65.0%
AACCTGGCCGGTCGACCATC+AGG + chr3_2:52703581-52703600 Msa0410840:CDS 65.0%
! GAGCTGGCCTGATGGTCGAC+CGG - chr3_2:52703591-52703610 None:intergenic 65.0%
GAACCGCCGTCGATGCATGG+TGG + chr3_2:52703647-52703666 Msa0410840:CDS 65.0%
!! GTGGAGTGATGGGTGGTGGG+AGG + chr3_2:52703666-52703685 Msa0410840:CDS 65.0%
!! GGAGTGATGGGTGGTGGGAG+GGG + chr3_2:52703668-52703687 Msa0410840:CDS 65.0%
!! GAGTGATGGGTGGTGGGAGG+GGG + chr3_2:52703669-52703688 Msa0410840:CDS 65.0%
GGCGGAGCCACATAGTGGCC+AGG + chr3_2:52702304-52702323 Msa0410840:intron 70.0%
GGCCTGATGGTCGACCGGCC+AGG - chr3_2:52703586-52703605 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 52699022 52705074 52699022 ID=Msa0410840;Name=Msa0410840
chr3_2 mRNA 52699022 52705074 52699022 ID=Msa0410840-mRNA-1;Parent=Msa0410840;Name=Msa0410840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=750|1|1|1|0.71|0.5|8|501|670
chr3_2 exon 52699022 52699211 52699022 ID=Msa0410840-mRNA-1:exon:10454;Parent=Msa0410840-mRNA-1
chr3_2 exon 52699234 52700082 52699234 ID=Msa0410840-mRNA-1:exon:10455;Parent=Msa0410840-mRNA-1
chr3_2 exon 52700622 52700707 52700622 ID=Msa0410840-mRNA-1:exon:10456;Parent=Msa0410840-mRNA-1
chr3_2 exon 52700806 52700928 52700806 ID=Msa0410840-mRNA-1:exon:10457;Parent=Msa0410840-mRNA-1
chr3_2 exon 52701042 52701860 52701042 ID=Msa0410840-mRNA-1:exon:10458;Parent=Msa0410840-mRNA-1
chr3_2 exon 52703529 52703745 52703529 ID=Msa0410840-mRNA-1:exon:10459;Parent=Msa0410840-mRNA-1
chr3_2 exon 52704075 52704971 52704075 ID=Msa0410840-mRNA-1:exon:10460;Parent=Msa0410840-mRNA-1
chr3_2 exon 52704992 52705074 52704992 ID=Msa0410840-mRNA-1:exon:10461;Parent=Msa0410840-mRNA-1
chr3_2 five_prime_UTR 52699022 52699211 52699022 ID=Msa0410840-mRNA-1:five_prime_utr;Parent=Msa0410840-mRNA-1
chr3_2 five_prime_UTR 52699234 52699793 52699234 ID=Msa0410840-mRNA-1:five_prime_utr;Parent=Msa0410840-mRNA-1
chr3_2 CDS 52699794 52700082 52699794 ID=Msa0410840-mRNA-1:cds;Parent=Msa0410840-mRNA-1
chr3_2 CDS 52700622 52700707 52700622 ID=Msa0410840-mRNA-1:cds;Parent=Msa0410840-mRNA-1
chr3_2 CDS 52700806 52700928 52700806 ID=Msa0410840-mRNA-1:cds;Parent=Msa0410840-mRNA-1
chr3_2 CDS 52701042 52701860 52701042 ID=Msa0410840-mRNA-1:cds;Parent=Msa0410840-mRNA-1
chr3_2 CDS 52703529 52703745 52703529 ID=Msa0410840-mRNA-1:cds;Parent=Msa0410840-mRNA-1
chr3_2 CDS 52704075 52704553 52704075 ID=Msa0410840-mRNA-1:cds;Parent=Msa0410840-mRNA-1
chr3_2 three_prime_UTR 52704554 52704971 52704554 ID=Msa0410840-mRNA-1:three_prime_utr;Parent=Msa0410840-mRNA-1
chr3_2 three_prime_UTR 52704992 52705074 52704992 ID=Msa0410840-mRNA-1:three_prime_utr;Parent=Msa0410840-mRNA-1
Gene Sequence

>Msa0410840

ATGTCGATAGACGATCTGTGTTTTGTGGAATGGAAAGAGCATTTTGTTTCACAAGAGCGTGGCCATCGTATAGTTCACTATTACCTAAAGGATTCTGCCGGGGAATCATTCCTTGCAGTTGTCGGCACTGAGAGGAGTGTTAGACACATGTGCTATGTTATTGCAGAGGAGTTCTTGGAAATTTGTGGAATGGAAATTCCACCTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTTGATTGGCTGACGTCGATGTTATCAAAGCAGCATCTACATGAAGATAGAAGTGTATGGCCTGCTCATAATTTGGCACTAGCTCATAAGATCGCAAATGGCAGTGTCAAAGAAGTTAGTGCACGAATGGTGGATGACAAGGACATTCCAAAGAGTAACTCCAAATTATCCAATTCAGACATCGTTTGGTCAGGACTTGCGTGGACATGTGGCAAACAACTCAAACATTATCCTGCTTTTTGCAGAAATGGGATCCAAATTGGGATTCAATCCTTTGTTTTCGTCATGGGCAATGGAGAGAACCATTATGTTGCTTATTTGGAGGATATGTATGAAGATAGGAGGGGGCAGAAAAAGGTTAAAGTAAGGTGGTTTCACCACAATCAGGAAGTCAAGGGTGCAATTCCAGTACGAAATACTCATCCACGAGAAGTTTTCATCACATCATATTCTCAAGTCATCAGTGCAGAGTGTGTTGATGGACCTGCCGCAGTCTTAACTCGGGAACACTTCGAAAAATGCACACCTTATTTTTCCCCCTCTTCAACAGACAGAATACATCTGTGCTTTAGGCAATTAAAAGGCAACAAAGTCAAGCCCTTTGACTTAAGCAAACTGCGTGGCTACTATACTCAGCCAGCTCTTTCTTCCTTGCACGTTGATACTATCCACAACCCCGAGTCTCTCAGCAACAGCCTCACAGGAGAAGATGAAGATTTGGATGTTGGTGATGATGCAAAGCGAGGAGCCAAGAGGAGTAGAAGTGCTAAGGGTTCTCCTCAGTCTTCTAACGGTCGAGAAGGGGTTAGGAAGTTGATTAGGAGTAATCCAATGATGGGATACCAAACTTTCCAAGTTGTAAATTATGCAAGGCCGGATAGGAGATTGCTTTCTCTGAAAAAGGTTGATTGTCAACCTTGGTTTGATCCCACATACAAGGTTGATGACAAGATAGAGGTACTCTGTCAAGATAGTGGTATCCGAGGCTGCTGGTTCAGGTGTACAATTGTACAGGTAGCTCGGAAACAGCTGAAAGTCCAATATGATGATGTTCAAGATGAAGATGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTTTTAAGTTGGCCAAGCCTGATAAACTTGAGATGAGACAACCTGGCCGGTCGACCATCAGGCCAGCTCCACCTCTTGAAGAACAAGAGTTGATTGCCGAGGTTGGAACCGCCGTCGATGCATGGTGGAGTGATGGGTGGTGGGAGGGGGTTATAACTACAATTGACAACTGTGGTGATGACAATGTTCAAGTTTACTTTCCTGGTGAAAGCTTGCAAATGACAGTACATAAGAAGGACTTAAGAATATCTAGAGATTGGTTAGGCGGCACGTGGGTTAATATAAAGGCAAAGCCTGATATAACCCCAACTATATTAACTGATATTAGCTTTAACACAAACCTCACTTTGTCTCCATCTTTGGAAAAAGATGCAGACTCAGTTGGGTTTGCTAATTCATGTCATGAAGTTCCTGCTGAGAAGTCTAATAAACCTGATATTGTTGAAGAGAAACTTGTATATTGTGGTGTTACTGAAAATGGGGTTTGTGTCCAAGATGATAAACCTCCTTCAGAAAAAAGTACCCAAGTTGGTGATATTGAAGATGATGGTGGTAACAACGACAAGGACAACAGTGAGAGTGGTGATAACAACAATGTTAATAATGAGAATAGCGATGCAAAGGTGATTCGGACTTCTAGTGTTGAGTGTAAAAGTGTAGAACTAATGGAAGTTGCTGCGTAA
Protein sequence

>Msa0410840

MSIDDLCFVEWKEHFVSQERGHRIVHYYLKDSAGESFLAVVGTERSVRHMCYVIAEEFLEICGMEIPPGFKWRSRREVVDWLTSMLSKQHLHEDRSVWPAHNLALAHKIANGSVKEVSARMVDDKDIPKSNSKLSNSDIVWSGLAWTCGKQLKHYPAFCRNGIQIGIQSFVFVMGNGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNTHPREVFITSYSQVISAECVDGPAAVLTREHFEKCTPYFSPSSTDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSSLHVDTIHNPESLSNSLTGEDEDLDVGDDAKRGAKRSRSAKGSPQSSNGREGVRKLIRSNPMMGYQTFQVVNYARPDRRLLSLKKVDCQPWFDPTYKVDDKIEVLCQDSGIRGCWFRCTIVQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLAKPDKLEMRQPGRSTIRPAPPLEEQELIAEVGTAVDAWWSDGWWEGVITTIDNCGDDNVQVYFPGESLQMTVHKKDLRISRDWLGGTWVNIKAKPDITPTILTDISFNTNLTLSPSLEKDADSVGFANSCHEVPAEKSNKPDIVEEKLVYCGVTENGVCVQDDKPPSEKSTQVGDIEDDGGNNDKDNSESGDNNNVNNENSDAKVIRTSSVECKSVELMEVAA*