Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503840 | ABP02611.1 | 71.111 | 45 | 13 | 0 | 66 | 110 | 12 | 56 | 4.56e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503840 | A4PRI1 | 71.111 | 45 | 13 | 0 | 66 | 110 | 12 | 56 | 2.18e-13 | 71.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0503840 | Msa0719080 | 0.822892 | 1.857217e-53 | -8.615850e-47 |
| Msa0503840 | Msa0719090 | 0.819180 | 1.329759e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503840 | MtrunA17_Chr8g0392721 | 71.795 | 39 | 11 | 0 | 66 | 104 | 12 | 50 | 1.36e-15 | 67.0 |
| Msa0503840 | MtrunA17_Chr1g0199791 | 66.000 | 50 | 16 | 1 | 12 | 61 | 1 | 49 | 4.30e-12 | 56.6 |
| Msa0503840 | MtrunA17_Chr3g0120701 | 72.727 | 33 | 9 | 0 | 66 | 98 | 12 | 44 | 8.64e-12 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGCAGCCTACTGCTGTT+GGG | 0.324874 | 3_4:-47484680 | Msa0503840:CDS |
| TGAACTCGGCGGCAGATCTA+TGG | 0.342117 | 3_4:-47487351 | Msa0503840:CDS |
| TTATTCTTCTCACCTCTTGC+CGG | 0.378620 | 3_4:-47487281 | Msa0503840:CDS |
| AACTTCTGTTTGTTCCTGTA+AGG | 0.384138 | 3_4:-47484730 | Msa0503840:CDS |
| TTGTCCACAACAGACCTTAC+AGG | 0.423953 | 3_4:+47484716 | None:intergenic |
| TTTCCGCAGCCTACTGCTGT+TGG | 0.429558 | 3_4:-47484681 | Msa0503840:CDS |
| TTGTGCGGCAGTTGCGGAGT+CGG | 0.437749 | 3_4:+47487222 | None:intergenic |
| ATAACCCTATGTGTTGTGTT+AGG | 0.454244 | 3_4:+47487300 | None:intergenic |
| TCCGCAGCCTACTGCTGTTG+GGG | 0.456756 | 3_4:-47484679 | Msa0503840:CDS |
| TCTTGGTGTGCAGTGTAGGC+TGG | 0.481877 | 3_4:-47484767 | Msa0503840:intron |
| ATCATCTCCTCACTGGAAAC+CGG | 0.502488 | 3_4:-47487377 | None:intergenic |
| TTGTTGTTGTGCGGCAGTTG+CGG | 0.505008 | 3_4:+47487216 | None:intergenic |
| CCGCAGCCTACTGCTGTTGG+GGG | 0.543395 | 3_4:-47484678 | Msa0503840:CDS |
| TGTTCCTGTAAGGTCTGTTG+TGG | 0.543606 | 3_4:-47484720 | Msa0503840:CDS |
| CTGGAAACCGGCGCTGAACT+CGG | 0.546923 | 3_4:-47487365 | Msa0503840:CDS |
| TCTGCCGCCGAGTTCAGCGC+CGG | 0.573111 | 3_4:+47487358 | None:intergenic |
| GGTGTGCAGTGTAGGCTGGA+GGG | 0.577637 | 3_4:-47484763 | Msa0503840:intron |
| GGCTGCGGAAACACAGACCT+GGG | 0.579722 | 3_4:+47484693 | None:intergenic |
| TCGGCGAGATGTGCGTGGAT+CGG | 0.580720 | 3_4:+47487241 | None:intergenic |
| ATGACCTTCGTAACTATCAC+CGG | 0.588059 | 3_4:-47487193 | Msa0503840:intron |
| TGGTGTGCAGTGTAGGCTGG+AGG | 0.595874 | 3_4:-47484764 | Msa0503840:intron |
| AGGCTGCGGAAACACAGACC+TGG | 0.597241 | 3_4:+47484692 | None:intergenic |
| GAAGGTCATTTGTTGTTGTG+CGG | 0.601943 | 3_4:+47487207 | None:intergenic |
| CGGAGTCGGCGAGATGTGCG+TGG | 0.602009 | 3_4:+47487236 | None:intergenic |
| AGGACCTAACACAACACATA+GGG | 0.603430 | 3_4:-47487304 | Msa0503840:CDS |
| GAGGACCTAACACAACACAT+AGG | 0.616752 | 3_4:-47487305 | Msa0503840:CDS |
| AGGTCTGTTGTGGACAACCC+AGG | 0.617858 | 3_4:-47484710 | Msa0503840:CDS |
| GAGTCTCGACGTTCATAACG+AGG | 0.648715 | 3_4:-47487324 | Msa0503840:CDS |
| GTTACCGGTGATAGTTACGA+AGG | 0.714605 | 3_4:+47487189 | None:intergenic |
| GAAACCGGCGCTGAACTCGG+CGG | 0.757139 | 3_4:-47487362 | Msa0503840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATATATAAAAAGAAAT+TGG | + | chr3_4:47487220-47487239 | None:intergenic | 10.0% |
| !!! | AATTTCTTTTTATATATTCT+TGG | - | chr3_4:47487219-47487238 | Msa0503840:CDS | 10.0% |
| !! | CTAAATAATTTCAACAAAAA+TGG | + | chr3_4:47485141-47485160 | None:intergenic | 15.0% |
| !! | AATATTAAACAATTCTGAAT+TGG | + | chr3_4:47486055-47486074 | None:intergenic | 15.0% |
| !! | TGTATTTCCTTAAATTTAAT+AGG | - | chr3_4:47486122-47486141 | Msa0503840:intron | 15.0% |
| !! | TAATTTCGAATTTGACATTA+GGG | - | chr3_4:47484885-47484904 | Msa0503840:intron | 20.0% |
| !!! | ATTTATGTTTTTCGAATAGT+AGG | - | chr3_4:47485167-47485186 | Msa0503840:intron | 20.0% |
| !!! | CAAACTAACAAAACTTTTTT+TGG | + | chr3_4:47485504-47485523 | None:intergenic | 20.0% |
| !!! | CAAAAAAAGTTTTGTTAGTT+TGG | - | chr3_4:47485502-47485521 | Msa0503840:intron | 20.0% |
| !!! | TCTTAAAGCTTTTAAATAGA+TGG | - | chr3_4:47485545-47485564 | Msa0503840:intron | 20.0% |
| !! | TGTGAAATTATCAAATTTGA+AGG | - | chr3_4:47485772-47485791 | Msa0503840:intron | 20.0% |
| !!! | GTCATTTGAGTTAAAATATT+TGG | - | chr3_4:47485932-47485951 | Msa0503840:intron | 20.0% |
| !! | TCCTTAAATTTAATAGGATT+TGG | - | chr3_4:47486128-47486147 | Msa0503840:intron | 20.0% |
| !!! | GATTTTCAATATTTGCTTTA+TGG | - | chr3_4:47486506-47486525 | Msa0503840:intron | 20.0% |
| !!! | TTTTTTTCTTGAATTGACTT+TGG | - | chr3_4:47486629-47486648 | Msa0503840:intron | 20.0% |
| !! | ACAAATAAATGTATGTTATG+TGG | + | chr3_4:47486680-47486699 | None:intergenic | 20.0% |
| !! | ACATAACATACATTTATTTG+TGG | - | chr3_4:47486679-47486698 | Msa0503840:intron | 20.0% |
| !! | CATAACATACATTTATTTGT+GGG | - | chr3_4:47486680-47486699 | Msa0503840:intron | 20.0% |
| !! | ATAACATACATTTATTTGTG+GGG | - | chr3_4:47486681-47486700 | Msa0503840:intron | 20.0% |
| !!! | TGTAGTTACAATAAGATTTT+GGG | - | chr3_4:47487165-47487184 | Msa0503840:intron | 20.0% |
| ! | CTAATTTCGAATTTGACATT+AGG | - | chr3_4:47484884-47484903 | Msa0503840:intron | 25.0% |
| ! | CTCAAACAAGATGATAAAAA+AGG | - | chr3_4:47485195-47485214 | Msa0503840:intron | 25.0% |
| ! | AGAGTGAAATAAAATGGAAA+AGG | + | chr3_4:47485267-47485286 | None:intergenic | 25.0% |
| !!! | CTATTTAAAAGCTTTAAGAC+AGG | + | chr3_4:47485544-47485563 | None:intergenic | 25.0% |
| ! | TTTCACAATGTCAAAATCAA+AGG | + | chr3_4:47485759-47485778 | None:intergenic | 25.0% |
| !!! | AGTTTTGAGAAAATGACTTA+CGG | + | chr3_4:47485831-47485850 | None:intergenic | 25.0% |
| ! | TAAATGCACTAAGTTACTAT+TGG | - | chr3_4:47485982-47486001 | Msa0503840:intron | 25.0% |
| ! | GCCAAATCCTATTAAATTTA+AGG | + | chr3_4:47486132-47486151 | None:intergenic | 25.0% |
| ! | AATTTATAACCACTTTGATC+AGG | + | chr3_4:47486344-47486363 | None:intergenic | 25.0% |
| ! | CCTAAAAATCAAAGTTTGAT+CGG | + | chr3_4:47486375-47486394 | None:intergenic | 25.0% |
| !!! | TTTTTCAATGCAAATCATGA+TGG | + | chr3_4:47486457-47486476 | None:intergenic | 25.0% |
| ! | TCAATAACATGTAGAAATGA+TGG | + | chr3_4:47486560-47486579 | None:intergenic | 25.0% |
| ! | TGCTATCATATAATTTGATG+AGG | + | chr3_4:47486606-47486625 | None:intergenic | 25.0% |
| ! | ATAAATGTATGTTATGTGGA+TGG | + | chr3_4:47486676-47486695 | None:intergenic | 25.0% |
| ! | ATCAATTGATAAGAAATTGC+AGG | + | chr3_4:47487060-47487079 | None:intergenic | 25.0% |
| ! | TGCAATTTCTTATCAATTGA+TGG | - | chr3_4:47487059-47487078 | Msa0503840:intron | 25.0% |
| ! | ATATTTCGTGTATGAAATGT+TGG | - | chr3_4:47487099-47487118 | Msa0503840:intron | 25.0% |
| !! | GTGTAGTTACAATAAGATTT+TGG | - | chr3_4:47487164-47487183 | Msa0503840:intron | 25.0% |
| !! | GTAGTTACAATAAGATTTTG+GGG | - | chr3_4:47487166-47487185 | Msa0503840:intron | 25.0% |
| !! | TAGTTACAATAAGATTTTGG+GGG | - | chr3_4:47487167-47487186 | Msa0503840:intron | 25.0% |
| CAGTCAATATGAACATGAAT+CGG | + | chr3_4:47484853-47484872 | None:intergenic | 30.0% | |
| TAGCAGTTGCAATTTAACAT+AGG | - | chr3_4:47485046-47485065 | Msa0503840:intron | 30.0% | |
| CTTGGTAGAGTGAAATAAAA+TGG | + | chr3_4:47485273-47485292 | None:intergenic | 30.0% | |
| !! | AGTTGTGATCTTTGAGTTTT+AGG | - | chr3_4:47485329-47485348 | Msa0503840:intron | 30.0% |
| !! | GATCAGAAAGTATTGTAGTT+TGG | - | chr3_4:47485367-47485386 | Msa0503840:intron | 30.0% |
| TGACAATAACTATTTCCCTT+CGG | - | chr3_4:47485589-47485608 | Msa0503840:intron | 30.0% | |
| GAATCATCAGAAAAATAAGG+CGG | + | chr3_4:47485644-47485663 | None:intergenic | 30.0% | |
| !!! | GCCTTATTTTTCTGATGATT+CGG | - | chr3_4:47485643-47485662 | Msa0503840:intron | 30.0% |
| ACCGAATCATCAGAAAAATA+AGG | + | chr3_4:47485647-47485666 | None:intergenic | 30.0% | |
| ACATCTAAGAATTACCTCAA+TGG | + | chr3_4:47485675-47485694 | None:intergenic | 30.0% | |
| GAGAATGATATGATACCATA+CGG | + | chr3_4:47485703-47485722 | None:intergenic | 30.0% | |
| CAAACTGAAGGAAGTAAATT+AGG | + | chr3_4:47486225-47486244 | None:intergenic | 30.0% | |
| CTAATTTACTTCCTTCAGTT+TGG | - | chr3_4:47486223-47486242 | Msa0503840:intron | 30.0% | |
| TTGGGTTAATATACAACCTA+TGG | - | chr3_4:47486249-47486268 | Msa0503840:intron | 30.0% | |
| AAATTGAATCCTGATCAAAG+TGG | - | chr3_4:47486332-47486351 | Msa0503840:intron | 30.0% | |
| !! | CCGATCAAACTTTGATTTTT+AGG | - | chr3_4:47486372-47486391 | Msa0503840:intron | 30.0% |
| CAACATAAGCAAACAATACA+TGG | + | chr3_4:47486487-47486506 | None:intergenic | 30.0% | |
| ! | TCTAAGACAGAACAGAATAA+GGG | + | chr3_4:47487000-47487019 | None:intergenic | 30.0% |
| ! | ATCTAAGACAGAACAGAATA+AGG | + | chr3_4:47487001-47487020 | None:intergenic | 30.0% |
| ATAACCCTATGTGTTGTGTT+AGG | + | chr3_4:47484706-47484725 | None:intergenic | 35.0% | |
| ! | GGTGAGAGAAATAGATTTTC+CGG | + | chr3_4:47484744-47484763 | None:intergenic | 35.0% |
| CAATATGAACATGAATCGGT+GGG | + | chr3_4:47484849-47484868 | None:intergenic | 35.0% | |
| TCAATATGAACATGAATCGG+TGG | + | chr3_4:47484850-47484869 | None:intergenic | 35.0% | |
| CAAAACAAAAGCTTGAAGCT+TGG | + | chr3_4:47485291-47485310 | None:intergenic | 35.0% | |
| !!! | AGCTTCAAGCTTTTGTTTTG+TGG | - | chr3_4:47485291-47485310 | Msa0503840:intron | 35.0% |
| GAGAGAATAGTAAATTCACC+TGG | + | chr3_4:47485482-47485501 | None:intergenic | 35.0% | |
| TCTAAGAATTACCTCAATGG+TGG | + | chr3_4:47485672-47485691 | None:intergenic | 35.0% | |
| GCTACAATGTCAAATAGCTA+TGG | - | chr3_4:47485794-47485813 | Msa0503840:intron | 35.0% | |
| CTCTCAATCTCTTATTGTAG+TGG | - | chr3_4:47485849-47485868 | Msa0503840:intron | 35.0% | |
| TGCTTATGATCACACAAATG+TGG | + | chr3_4:47486009-47486028 | None:intergenic | 35.0% | |
| ATATTCTTCACTCTCTCCAT+AGG | + | chr3_4:47486268-47486287 | None:intergenic | 35.0% | |
| GAATGCTTGCAAGAACAAAA+TGG | + | chr3_4:47486421-47486440 | None:intergenic | 35.0% | |
| ! | CATTTATTTGTGGGGTTTTG+TGG | - | chr3_4:47486689-47486708 | Msa0503840:intron | 35.0% |
| CTGTGAAAAATTCTAGCAGA+TGG | - | chr3_4:47486882-47486901 | Msa0503840:intron | 35.0% | |
| AAAGACAGACACAAAACACT+TGG | + | chr3_4:47486954-47486973 | None:intergenic | 35.0% | |
| CTAAGACAGAACAGAATAAG+GGG | + | chr3_4:47486999-47487018 | None:intergenic | 35.0% | |
| ATGAAATGTTGGACATGCTT+CGG | - | chr3_4:47487110-47487129 | Msa0503840:intron | 35.0% | |
| CTAGTTCATATTCATACCCT+TGG | + | chr3_4:47487136-47487155 | None:intergenic | 35.0% | |
| GGTATGAATATGAACTAGCA+TGG | - | chr3_4:47487138-47487157 | Msa0503840:intron | 35.0% | |
| AACTTCTGTTTGTTCCTGTA+AGG | - | chr3_4:47487273-47487292 | Msa0503840:CDS | 35.0% | |
| AGGACCTAACACAACACATA+GGG | - | chr3_4:47484699-47484718 | Msa0503840:CDS | 40.0% | |
| TTATTCTTCTCACCTCTTGC+CGG | - | chr3_4:47484722-47484741 | Msa0503840:CDS | 40.0% | |
| ! | GAAATAGATTTTCCGGCAAG+AGG | + | chr3_4:47484737-47484756 | None:intergenic | 40.0% |
| !! | GAAGGTCATTTGTTGTTGTG+CGG | + | chr3_4:47484799-47484818 | None:intergenic | 40.0% |
| ATGACCTTCGTAACTATCAC+CGG | - | chr3_4:47484810-47484829 | Msa0503840:intron | 40.0% | |
| TAGTTTGGATTGAGTGCAGA+GGG | - | chr3_4:47485382-47485401 | Msa0503840:intron | 40.0% | |
| AATAAGGCGGCTTCACAATT+AGG | + | chr3_4:47485631-47485650 | None:intergenic | 40.0% | |
| TCTTAGATGTGCTTACCGTA+TGG | - | chr3_4:47485685-47485704 | Msa0503840:intron | 40.0% | |
| GTAGTGGTTGAATAGCTTCA+AGG | - | chr3_4:47485865-47485884 | Msa0503840:intron | 40.0% | |
| ACTTCCTTCAGTTTGGTTGT+TGG | - | chr3_4:47486230-47486249 | Msa0503840:intron | 40.0% | |
| CTTCCTTCAGTTTGGTTGTT+GGG | - | chr3_4:47486231-47486250 | Msa0503840:intron | 40.0% | |
| TAACCCAACAACCAAACTGA+AGG | + | chr3_4:47486237-47486256 | None:intergenic | 40.0% | |
| ! | ATATTCTTGGTGTGCAGTGT+AGG | - | chr3_4:47487232-47487251 | Msa0503840:CDS | 40.0% |
| GAGGACCTAACACAACACAT+AGG | - | chr3_4:47484698-47484717 | Msa0503840:CDS | 45.0% | |
| GTTACCGGTGATAGTTACGA+AGG | + | chr3_4:47484817-47484836 | None:intergenic | 45.0% | |
| ATCACAACTGTCACTCTGTC+AGG | + | chr3_4:47485318-47485337 | None:intergenic | 45.0% | |
| GTAGTTTGGATTGAGTGCAG+AGG | - | chr3_4:47485381-47485400 | Msa0503840:intron | 45.0% | |
| ! | CAGAGGGATGCTTTTGATGT+TGG | - | chr3_4:47485398-47485417 | Msa0503840:intron | 45.0% |
| ! | GGGATGCTTTTGATGTTGGA+CGG | - | chr3_4:47485402-47485421 | Msa0503840:intron | 45.0% |
| ! | CTGGCTCTCATATTGTTGTC+AGG | + | chr3_4:47485463-47485482 | None:intergenic | 45.0% |
| CTGACAACAATATGAGAGCC+AGG | - | chr3_4:47485461-47485480 | Msa0503840:intron | 45.0% | |
| TTTCCAATGCACTCTCCGAA+GGG | + | chr3_4:47485607-47485626 | None:intergenic | 45.0% | |
| ! | TTTTCCAATGCACTCTCCGA+AGG | + | chr3_4:47485608-47485627 | None:intergenic | 45.0% |
| !! | TGATTCGGTTTCCACCATTG+AGG | - | chr3_4:47485658-47485677 | Msa0503840:intron | 45.0% |
| GCAGTGAACTGCATAACAAC+AGG | + | chr3_4:47486740-47486759 | None:intergenic | 45.0% | |
| CACTGCGTGCATTTCTGTTA+TGG | - | chr3_4:47486754-47486773 | Msa0503840:intron | 45.0% | |
| ! | ACCAGTTTTGCTGCTATGTG+TGG | - | chr3_4:47486788-47486807 | Msa0503840:intron | 45.0% |
| ACCACACATAGCAGCAAAAC+TGG | + | chr3_4:47486792-47486811 | None:intergenic | 45.0% | |
| ! | TTTTGCTGCTATGTGTGGTC+TGG | - | chr3_4:47486793-47486812 | Msa0503840:intron | 45.0% |
| TTTGCTGCTATGTGTGGTCT+GGG | - | chr3_4:47486794-47486813 | Msa0503840:intron | 45.0% | |
| TGTTCCTGTAAGGTCTGTTG+TGG | - | chr3_4:47487283-47487302 | Msa0503840:CDS | 45.0% | |
| TTGTCCACAACAGACCTTAC+AGG | + | chr3_4:47487290-47487309 | None:intergenic | 45.0% | |
| GAGTCTCGACGTTCATAACG+AGG | - | chr3_4:47484679-47484698 | Msa0503840:CDS | 50.0% | |
| ! | TTGTTGTTGTGCGGCAGTTG+CGG | + | chr3_4:47484790-47484809 | None:intergenic | 50.0% |
| GGTGGGAGAAAGTGAGTTAC+CGG | + | chr3_4:47484832-47484851 | None:intergenic | 50.0% | |
| TGATGTTGGACGGTGTTCAG+CGG | - | chr3_4:47485412-47485431 | Msa0503840:intron | 50.0% | |
| ! | TTTCCCTTCGGAGAGTGCAT+TGG | - | chr3_4:47485601-47485620 | Msa0503840:intron | 50.0% |
| !! | GGGTTTTGTGGCGTTTGTCT+CGG | - | chr3_4:47486701-47486720 | Msa0503840:intron | 50.0% |
| TGAACTCGGCGGCAGATCTA+TGG | - | chr3_4:47484652-47484671 | Msa0503840:CDS | 55.0% | |
| TGGCGTTTGTCTCGGCTGTT+TGG | - | chr3_4:47486709-47486728 | Msa0503840:intron | 55.0% | |
| GGCGTTTGTCTCGGCTGTTT+GGG | - | chr3_4:47486710-47486729 | Msa0503840:intron | 55.0% | |
| CTATGTGTGGTCTGGGCATG+TGG | - | chr3_4:47486801-47486820 | Msa0503840:intron | 55.0% | |
| TGTTGGACATGCTTCGGCCA+AGG | - | chr3_4:47487116-47487135 | Msa0503840:intron | 55.0% | |
| GTTGGACATGCTTCGGCCAA+GGG | - | chr3_4:47487117-47487136 | Msa0503840:intron | 55.0% | |
| ! | TCTTGGTGTGCAGTGTAGGC+TGG | - | chr3_4:47487236-47487255 | Msa0503840:CDS | 55.0% |
| AGGTCTGTTGTGGACAACCC+AGG | - | chr3_4:47487293-47487312 | Msa0503840:CDS | 55.0% | |
| TTTCCGCAGCCTACTGCTGT+TGG | - | chr3_4:47487322-47487341 | Msa0503840:CDS | 55.0% | |
| TTCCGCAGCCTACTGCTGTT+GGG | - | chr3_4:47487323-47487342 | Msa0503840:CDS | 55.0% | |
| GGGGGAGTAGGTGATGTTCA+TGG | - | chr3_4:47487343-47487362 | Msa0503840:CDS | 55.0% | |
| ! | CTGGAAACCGGCGCTGAACT+CGG | - | chr3_4:47484638-47484657 | Msa0503840:CDS | 60.0% |
| TCGGCGAGATGTGCGTGGAT+CGG | + | chr3_4:47484765-47484784 | None:intergenic | 60.0% | |
| TTGTGCGGCAGTTGCGGAGT+CGG | + | chr3_4:47484784-47484803 | None:intergenic | 60.0% | |
| TGGTGTGCAGTGTAGGCTGG+AGG | - | chr3_4:47487239-47487258 | Msa0503840:CDS | 60.0% | |
| GGTGTGCAGTGTAGGCTGGA+GGG | - | chr3_4:47487240-47487259 | Msa0503840:CDS | 60.0% | |
| GGCTGCGGAAACACAGACCT+GGG | + | chr3_4:47487313-47487332 | None:intergenic | 60.0% | |
| AGGCTGCGGAAACACAGACC+TGG | + | chr3_4:47487314-47487333 | None:intergenic | 60.0% | |
| TCCGCAGCCTACTGCTGTTG+GGG | - | chr3_4:47487324-47487343 | Msa0503840:CDS | 60.0% | |
| CCTACTCCCCCAACAGCAGT+AGG | + | chr3_4:47487334-47487353 | None:intergenic | 60.0% | |
| CCTACTGCTGTTGGGGGAGT+AGG | - | chr3_4:47487331-47487350 | Msa0503840:CDS | 60.0% | |
| ! | GAAACCGGCGCTGAACTCGG+CGG | - | chr3_4:47484641-47484660 | Msa0503840:CDS | 65.0% |
| CCCCCAACAGCAGTAGGCTG+CGG | + | chr3_4:47487328-47487347 | None:intergenic | 65.0% | |
| CCGCAGCCTACTGCTGTTGG+GGG | - | chr3_4:47487325-47487344 | Msa0503840:CDS | 65.0% | |
| TCTGCCGCCGAGTTCAGCGC+CGG | + | chr3_4:47484648-47484667 | None:intergenic | 70.0% | |
| CGGAGTCGGCGAGATGTGCG+TGG | + | chr3_4:47484770-47484789 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 47484638 | 47487387 | 47484638 | ID=Msa0503840;Name=Msa0503840 |
| chr3_4 | mRNA | 47484638 | 47487387 | 47484638 | ID=Msa0503840-mRNA-1;Parent=Msa0503840;Name=Msa0503840-mRNA-1;_AED=0.52;_eAED=0.52;_QI=0|0|0|0.5|1|1|2|0|110 |
| chr3_4 | exon | 47487194 | 47487387 | 47487194 | ID=Msa0503840-mRNA-1:exon:10238;Parent=Msa0503840-mRNA-1 |
| chr3_4 | exon | 47484638 | 47484776 | 47484638 | ID=Msa0503840-mRNA-1:exon:10237;Parent=Msa0503840-mRNA-1 |
| chr3_4 | CDS | 47487194 | 47487387 | 47487194 | ID=Msa0503840-mRNA-1:cds;Parent=Msa0503840-mRNA-1 |
| chr3_4 | CDS | 47484638 | 47484776 | 47484638 | ID=Msa0503840-mRNA-1:cds;Parent=Msa0503840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
