Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506080 | XP_013460457.1 | 93.784 | 370 | 22 | 1 | 1 | 370 | 1 | 369 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506080 | sp|A4ZDG8|BSMT3_PETHY | 56.522 | 368 | 147 | 1 | 1 | 368 | 1 | 355 | 1.19e-154 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506080 | A0A072V8I3 | 93.784 | 370 | 22 | 1 | 1 | 370 | 1 | 369 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0414540 | Msa0506080 | 0.842534 | 2.438595e-58 | -8.615850e-47 |
| Msa0459400 | Msa0506080 | 0.874830 | 4.970713e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506080 | MtrunA17_Chr3g0107591 | 93.784 | 370 | 22 | 1 | 1 | 370 | 1 | 369 | 0.0 | 719 |
| Msa0506080 | MtrunA17_Chr4g0008111 | 81.030 | 369 | 59 | 1 | 1 | 369 | 1 | 358 | 0.0 | 620 |
| Msa0506080 | MtrunA17_Chr8g0372821 | 72.432 | 370 | 102 | 0 | 1 | 370 | 1 | 370 | 0.0 | 577 |
| Msa0506080 | MtrunA17_Chr8g0372671 | 74.526 | 369 | 86 | 2 | 1 | 369 | 1 | 361 | 0.0 | 575 |
| Msa0506080 | MtrunA17_Chr5g0404631 | 68.919 | 370 | 114 | 1 | 1 | 369 | 11 | 380 | 0.0 | 555 |
| Msa0506080 | MtrunA17_Chr6g0475221 | 67.568 | 370 | 104 | 4 | 1 | 370 | 1 | 354 | 9.41e-180 | 503 |
| Msa0506080 | MtrunA17_Chr6g0475241 | 66.307 | 371 | 110 | 3 | 1 | 370 | 1 | 357 | 3.94e-179 | 501 |
| Msa0506080 | MtrunA17_Chr8g0343971 | 62.973 | 370 | 125 | 2 | 1 | 369 | 1 | 359 | 7.48e-176 | 493 |
| Msa0506080 | MtrunA17_Chr8g0343981 | 61.351 | 370 | 128 | 3 | 1 | 369 | 1 | 356 | 6.07e-167 | 470 |
| Msa0506080 | MtrunA17_Chr3g0144871 | 45.213 | 376 | 191 | 5 | 1 | 369 | 1 | 368 | 3.84e-115 | 339 |
| Msa0506080 | MtrunA17_Chr5g0419851 | 38.122 | 362 | 202 | 3 | 1 | 355 | 61 | 407 | 7.45e-92 | 281 |
| Msa0506080 | MtrunA17_Chr3g0107871 | 40.171 | 351 | 193 | 5 | 24 | 368 | 1 | 340 | 5.43e-88 | 269 |
| Msa0506080 | MtrunA17_Chr7g0252361 | 37.433 | 374 | 215 | 5 | 5 | 370 | 3 | 365 | 9.82e-85 | 261 |
| Msa0506080 | MtrunA17_Chr8g0372801 | 76.154 | 130 | 31 | 0 | 90 | 219 | 31 | 160 | 8.96e-71 | 219 |
| Msa0506080 | MtrunA17_Chr3g0100101 | 35.754 | 358 | 208 | 7 | 1 | 346 | 10 | 357 | 4.11e-57 | 191 |
| Msa0506080 | MtrunA17_Chr5g0444921 | 33.248 | 391 | 223 | 9 | 1 | 367 | 13 | 389 | 1.90e-55 | 186 |
| Msa0506080 | MtrunA17_Chr1g0155451 | 40.000 | 215 | 116 | 2 | 161 | 369 | 9 | 216 | 3.71e-55 | 180 |
| Msa0506080 | MtrunA17_Chr1g0208641 | 34.358 | 358 | 187 | 12 | 29 | 369 | 40 | 366 | 3.16e-48 | 167 |
| Msa0506080 | MtrunA17_Chr7g0252501 | 35.610 | 205 | 118 | 3 | 168 | 370 | 38 | 230 | 1.49e-40 | 142 |
| Msa0506080 | MtrunA17_Chr1g0155461 | 46.541 | 159 | 75 | 5 | 1 | 149 | 1 | 159 | 1.13e-39 | 139 |
| Msa0506080 | MtrunA17_Chr1g0155491 | 45.912 | 159 | 76 | 4 | 1 | 149 | 1 | 159 | 1.61e-38 | 136 |
| Msa0506080 | MtrunA17_Chr6g0455071 | 51.327 | 113 | 45 | 2 | 137 | 243 | 11 | 119 | 7.44e-34 | 122 |
| Msa0506080 | MtrunA17_Chr3g0099281 | 37.278 | 169 | 98 | 4 | 1 | 161 | 13 | 181 | 1.80e-26 | 104 |
| Msa0506080 | MtrunA17_Chr7g0252341 | 44.954 | 109 | 56 | 2 | 54 | 161 | 27 | 132 | 1.19e-23 | 95.9 |
| Msa0506080 | MtrunA17_Chr1g0155471 | 37.600 | 125 | 70 | 2 | 245 | 369 | 8 | 124 | 6.04e-23 | 92.8 |
| Msa0506080 | MtrunA17_Chr1g0155481 | 46.988 | 83 | 44 | 0 | 163 | 245 | 17 | 99 | 1.08e-22 | 92.8 |
| Msa0506080 | MtrunA17_Chr3g0099271 | 32.105 | 190 | 109 | 4 | 168 | 351 | 15 | 190 | 3.51e-20 | 87.8 |
| Msa0506080 | MtrunA17_Chr6g0455081 | 31.469 | 143 | 83 | 4 | 228 | 369 | 2 | 130 | 5.54e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506080 | AT3G11480.1 | 41.509 | 371 | 195 | 5 | 4 | 369 | 26 | 379 | 1.23e-97 | 295 |
| Msa0506080 | AT5G66430.1 | 40.771 | 363 | 204 | 4 | 9 | 369 | 1 | 354 | 4.43e-97 | 293 |
| Msa0506080 | AT1G19640.1 | 42.894 | 387 | 202 | 5 | 1 | 368 | 1 | 387 | 1.04e-95 | 290 |
| Msa0506080 | AT5G04380.3 | 41.622 | 370 | 195 | 7 | 6 | 369 | 35 | 389 | 1.59e-94 | 288 |
| Msa0506080 | AT5G04370.1 | 42.350 | 366 | 194 | 7 | 7 | 369 | 39 | 390 | 1.54e-93 | 285 |
| Msa0506080 | AT5G04370.3 | 42.350 | 366 | 194 | 7 | 7 | 369 | 44 | 395 | 4.96e-93 | 284 |
| Msa0506080 | AT5G04370.2 | 42.350 | 366 | 194 | 7 | 7 | 369 | 58 | 409 | 5.53e-93 | 285 |
| Msa0506080 | AT3G21950.1 | 42.063 | 378 | 193 | 5 | 6 | 369 | 3 | 368 | 1.25e-91 | 280 |
| Msa0506080 | AT5G38020.1 | 41.799 | 378 | 194 | 7 | 6 | 369 | 3 | 368 | 3.53e-91 | 278 |
| Msa0506080 | AT4G36470.1 | 39.895 | 381 | 201 | 7 | 2 | 369 | 5 | 370 | 1.78e-90 | 276 |
| Msa0506080 | AT5G04380.1 | 41.081 | 370 | 190 | 8 | 6 | 369 | 31 | 378 | 7.91e-90 | 275 |
| Msa0506080 | AT5G04380.2 | 42.169 | 332 | 175 | 6 | 40 | 369 | 2 | 318 | 4.68e-88 | 268 |
| Msa0506080 | AT2G14060.1 | 38.830 | 376 | 210 | 7 | 3 | 369 | 8 | 372 | 1.15e-86 | 267 |
| Msa0506080 | AT3G21950.2 | 39.024 | 410 | 192 | 6 | 6 | 369 | 3 | 400 | 1.13e-85 | 265 |
| Msa0506080 | AT5G38020.2 | 42.090 | 335 | 169 | 6 | 48 | 369 | 7 | 329 | 1.03e-82 | 255 |
| Msa0506080 | AT2G14060.2 | 44.156 | 231 | 125 | 2 | 3 | 232 | 8 | 235 | 2.04e-65 | 208 |
| Msa0506080 | AT1G68040.1 | 34.844 | 353 | 193 | 8 | 3 | 343 | 7 | 334 | 3.09e-58 | 193 |
| Msa0506080 | AT5G55250.1 | 33.770 | 382 | 219 | 10 | 1 | 365 | 13 | 377 | 2.13e-55 | 186 |
| Msa0506080 | AT1G15125.1 | 33.333 | 360 | 176 | 13 | 9 | 344 | 1 | 320 | 2.72e-51 | 175 |
| Msa0506080 | AT5G55250.2 | 33.524 | 349 | 198 | 10 | 34 | 365 | 8 | 339 | 4.70e-49 | 169 |
| Msa0506080 | AT5G37970.1 | 34.109 | 387 | 203 | 12 | 5 | 369 | 6 | 362 | 1.55e-48 | 168 |
| Msa0506080 | AT5G38100.1 | 35.000 | 360 | 187 | 13 | 9 | 351 | 10 | 339 | 1.21e-47 | 166 |
| Msa0506080 | AT5G37990.1 | 33.592 | 387 | 205 | 12 | 5 | 369 | 6 | 362 | 4.28e-47 | 164 |
| Msa0506080 | AT5G38100.3 | 36.392 | 316 | 157 | 11 | 50 | 351 | 31 | 316 | 2.13e-46 | 161 |
| Msa0506080 | AT4G26420.1 | 31.653 | 357 | 212 | 11 | 5 | 344 | 9 | 350 | 5.89e-44 | 156 |
| Msa0506080 | AT5G38780.1 | 31.522 | 368 | 201 | 12 | 4 | 351 | 5 | 341 | 6.50e-44 | 155 |
| Msa0506080 | AT5G56300.1 | 27.778 | 360 | 221 | 8 | 5 | 344 | 20 | 360 | 5.40e-42 | 151 |
| Msa0506080 | AT5G38780.2 | 32.177 | 317 | 168 | 9 | 51 | 351 | 7 | 292 | 7.25e-42 | 149 |
| Msa0506080 | AT3G44840.1 | 32.370 | 346 | 189 | 10 | 9 | 342 | 7 | 319 | 1.49e-40 | 146 |
| Msa0506080 | AT3G44860.1 | 32.886 | 298 | 151 | 7 | 9 | 284 | 7 | 277 | 3.20e-37 | 137 |
| Msa0506080 | AT1G66700.1 | 28.933 | 356 | 207 | 10 | 1 | 342 | 1 | 324 | 4.83e-37 | 137 |
| Msa0506080 | AT3G44870.1 | 31.987 | 297 | 152 | 7 | 9 | 284 | 7 | 274 | 4.85e-37 | 138 |
| Msa0506080 | AT1G66720.1 | 28.779 | 344 | 206 | 8 | 9 | 342 | 9 | 323 | 1.69e-35 | 133 |
| Msa0506080 | AT1G66690.1 | 27.322 | 366 | 200 | 10 | 1 | 342 | 1 | 324 | 8.04e-34 | 129 |
| Msa0506080 | AT1G15125.2 | 35.909 | 220 | 116 | 8 | 9 | 217 | 1 | 206 | 7.49e-33 | 123 |
| Msa0506080 | AT4G26420.3 | 33.203 | 256 | 145 | 9 | 5 | 243 | 9 | 255 | 3.63e-32 | 122 |
| Msa0506080 | AT5G38100.4 | 38.532 | 218 | 110 | 8 | 9 | 213 | 10 | 216 | 2.94e-31 | 119 |
| Msa0506080 | AT5G38100.2 | 38.532 | 218 | 110 | 8 | 9 | 213 | 10 | 216 | 2.96e-31 | 119 |
| Msa0506080 | AT4G26420.2 | 32.331 | 266 | 148 | 10 | 9 | 257 | 1 | 251 | 1.07e-30 | 118 |
| Msa0506080 | AT1G66700.3 | 33.036 | 224 | 125 | 6 | 1 | 213 | 1 | 210 | 2.19e-27 | 109 |
Find 91 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACGTAGTTTCTCTTTAA+AGG | 0.109242 | 3_4:+52272112 | None:intergenic |
| GCAGACTTGGGTTGTTCTTT+TGG | 0.176679 | 3_4:-52272281 | Msa0506080:CDS |
| TGCTACTTCTATGGGGTTCC+TGG | 0.206848 | 3_4:-52272065 | Msa0506080:CDS |
| TGGAGGTTTCTGAAGTTAAT+TGG | 0.209401 | 3_4:-52271192 | Msa0506080:CDS |
| GCAAAGAGTGTTGTTACATT+TGG | 0.256725 | 3_4:-52271616 | Msa0506080:CDS |
| ATGGGCCCTTGCTACTTCTA+TGG | 0.272247 | 3_4:-52272074 | Msa0506080:CDS |
| ACCATGAGTAGAAACCTATT+TGG | 0.280053 | 3_4:-52270933 | Msa0506080:exon |
| TAACAACACTCTTTGCTTGA+TGG | 0.282228 | 3_4:+52271623 | None:intergenic |
| CGGGGAATGTGTTGCAATAT+AGG | 0.287603 | 3_4:+52272318 | None:intergenic |
| CATTGCCAGTATCCTGAAAA+AGG | 0.295034 | 3_4:-52270708 | Msa0506080:three_prime_UTR |
| GTCTGCAATTGCCAAGCTTC+CGG | 0.298575 | 3_4:+52272298 | None:intergenic |
| CCTGCAAGACCATATCATTA+AGG | 0.303454 | 3_4:+52271576 | None:intergenic |
| CAAAGAGTGTTGTTACATTT+GGG | 0.311459 | 3_4:-52271615 | Msa0506080:CDS |
| ACAATATGGCACAATGCATT+AGG | 0.317665 | 3_4:-52271099 | Msa0506080:CDS |
| CCTTAATGATATGGTCTTGC+AGG | 0.322544 | 3_4:-52271576 | Msa0506080:intron |
| ATATAAAATTGAAACCAAAT+AGG | 0.325973 | 3_4:+52270919 | None:intergenic |
| ATCATTTGTCATCAATAAAC+TGG | 0.330242 | 3_4:-52271212 | Msa0506080:CDS |
| GATGGAGATGGGTAATAGTT+AGG | 0.334124 | 3_4:+52271265 | None:intergenic |
| CAGTCTTCAATGGCTATCTA+AGG | 0.342755 | 3_4:-52271985 | Msa0506080:intron |
| AGAGAAACTACGTGATGAAT+TGG | 0.355068 | 3_4:-52272105 | Msa0506080:CDS |
| TTGTTACATTTGGGAACTAA+TGG | 0.356960 | 3_4:-52271606 | Msa0506080:CDS |
| CTTTGGTGAAGGTGTCATTA+AGG | 0.358741 | 3_4:-52271047 | Msa0506080:CDS |
| ATAACTAACAACATATATAT+TGG | 0.362994 | 3_4:+52270792 | None:intergenic |
| TGGGCCCTTGCTACTTCTAT+GGG | 0.368374 | 3_4:-52272073 | Msa0506080:CDS |
| TCTGCAATTGCCAAGCTTCC+GGG | 0.370317 | 3_4:+52272299 | None:intergenic |
| GGCCATGGCCCTTAATGATA+TGG | 0.380868 | 3_4:-52271585 | Msa0506080:CDS |
| TGTCAACAATATGCTAAGAT+TGG | 0.398803 | 3_4:+52270961 | None:intergenic |
| TGATGAATTGGAAACTGAAA+TGG | 0.399215 | 3_4:-52272093 | Msa0506080:CDS |
| AAGCTTGGCAATTGCAGACT+TGG | 0.404644 | 3_4:-52272294 | Msa0506080:CDS |
| AACACTGGCCACACTTATAT+AGG | 0.406806 | 3_4:+52274026 | None:intergenic |
| TTGAGGGGCTTGTGCTCGTC+AGG | 0.408473 | 3_4:+52271771 | None:intergenic |
| GTTGCAATATAGGTTGGTTA+TGG | 0.409482 | 3_4:+52272328 | None:intergenic |
| TAGAGATGATGGATACAATA+TGG | 0.413499 | 3_4:-52271113 | Msa0506080:CDS |
| TGCAAACAACTCCTTACTTC+AGG | 0.420015 | 3_4:-52273875 | Msa0506080:intron |
| CAATATGGCACAATGCATTA+GGG | 0.420742 | 3_4:-52271098 | Msa0506080:CDS |
| ACCAAATAGGTTTCTACTCA+TGG | 0.423934 | 3_4:+52270932 | None:intergenic |
| GATATCACCAGCAAAGTGTT+TGG | 0.438395 | 3_4:+52272257 | None:intergenic |
| ATGGAGATGGGTAATAGTTA+GGG | 0.439652 | 3_4:+52271266 | None:intergenic |
| TCAGAATCACTTAGAGATGA+TGG | 0.456810 | 3_4:-52271124 | Msa0506080:CDS |
| CTGCAAGACCATATCATTAA+GGG | 0.458632 | 3_4:+52271577 | None:intergenic |
| ATCTCCATCTGAAGTGAAGT+TGG | 0.465202 | 3_4:-52271251 | Msa0506080:CDS |
| CTAGTTAGTCACTTTGGTGA+AGG | 0.467251 | 3_4:-52271058 | Msa0506080:CDS |
| CCTTTGCTAGTTAGTCACTT+TGG | 0.468922 | 3_4:-52271064 | Msa0506080:CDS |
| CAACACATTCCCCGGAAGCT+TGG | 0.475670 | 3_4:-52272309 | Msa0506080:CDS |
| ACTTCCAACTTCACTTCAGA+TGG | 0.478421 | 3_4:+52271247 | None:intergenic |
| TAAGCCTTGATGACGTTTGA+GGG | 0.483734 | 3_4:+52271755 | None:intergenic |
| GATATAATATACCTGAAGTA+AGG | 0.486424 | 3_4:+52273864 | None:intergenic |
| AGCTTGGCAATTGCAGACTT+GGG | 0.487576 | 3_4:-52272293 | Msa0506080:CDS |
| CACATGAATTTCTGTTGTAT+CGG | 0.489218 | 3_4:-52270543 | Msa0506080:three_prime_UTR |
| TTAGCTAGGGAATGTTATGA+TGG | 0.499854 | 3_4:-52270836 | Msa0506080:three_prime_UTR |
| GACCATATCATTAAGGGCCA+TGG | 0.501518 | 3_4:+52271583 | None:intergenic |
| GTAAGCCTTGATGACGTTTG+AGG | 0.505816 | 3_4:+52271754 | None:intergenic |
| ATCAGAAATTATCAAAGTTG+TGG | 0.510809 | 3_4:-52272237 | Msa0506080:CDS |
| AACTTCACTTCAGATGGAGA+TGG | 0.521013 | 3_4:+52271253 | None:intergenic |
| GTATGTTGAAATTATCTATG+AGG | 0.526038 | 3_4:-52270745 | Msa0506080:three_prime_UTR |
| ACTCAAGTACTACATATGAA+TGG | 0.527155 | 3_4:-52273919 | Msa0506080:CDS |
| GAATGTGTTGCAATATAGGT+TGG | 0.528201 | 3_4:+52272322 | None:intergenic |
| TAGCTAGGGAATGTTATGAT+GGG | 0.540129 | 3_4:-52270835 | Msa0506080:three_prime_UTR |
| GTTTCTCTTTAAAGGTGTCA+AGG | 0.544854 | 3_4:+52272120 | None:intergenic |
| TTTCTCTTTAAAGGTGTCAA+GGG | 0.544925 | 3_4:+52272121 | None:intergenic |
| CTACATATGAATGGAAGCGT+TGG | 0.546147 | 3_4:-52273910 | Msa0506080:CDS |
| CATTTCAGATTCAAAGTCAA+AGG | 0.547130 | 3_4:+52271147 | None:intergenic |
| GGTGATTCATTAGGTTCCTG+AGG | 0.548487 | 3_4:-52271822 | Msa0506080:intron |
| GATGAATTGGAAACTGAAAT+GGG | 0.554184 | 3_4:-52272092 | Msa0506080:CDS |
| ACTCATCGTACAGTCTTCAA+TGG | 0.562055 | 3_4:-52271995 | Msa0506080:CDS |
| CTATATTGCAACACATTCCC+CGG | 0.563925 | 3_4:-52272317 | Msa0506080:CDS |
| AAGCCCCTCAAACGTCATCA+AGG | 0.564466 | 3_4:-52271759 | Msa0506080:CDS |
| GTCAGTGACAGTGATTAGCT+AGG | 0.568400 | 3_4:-52270850 | Msa0506080:three_prime_UTR |
| AAGTTGGAAGTTCTCAATGA+AGG | 0.574034 | 3_4:-52271235 | Msa0506080:CDS |
| CTGCAATTGCCAAGCTTCCG+GGG | 0.575841 | 3_4:+52272300 | None:intergenic |
| CATTTGGGAACTAATGGCCA+TGG | 0.576572 | 3_4:-52271600 | Msa0506080:CDS |
| ACGTTGTTGAAGTCATTCCT+TGG | 0.578333 | 3_4:+52272152 | None:intergenic |
| GGCACAATGCATTAGGGCTG+TGG | 0.579915 | 3_4:-52271092 | Msa0506080:CDS |
| ATTTGTCATCAATAAACTGG+AGG | 0.586227 | 3_4:-52271209 | Msa0506080:CDS |
| GTGATTCATTAGGTTCCTGA+GGG | 0.586939 | 3_4:-52271821 | Msa0506080:intron |
| GGAACCCCATAGAAGTAGCA+AGG | 0.591511 | 3_4:+52272068 | None:intergenic |
| AGCTAGGGAATGTTATGATG+GGG | 0.592444 | 3_4:-52270834 | Msa0506080:three_prime_UTR |
| CCAAAGTGACTAACTAGCAA+AGG | 0.593693 | 3_4:+52271064 | None:intergenic |
| TCAGTGACAGTGATTAGCTA+GGG | 0.595013 | 3_4:-52270849 | Msa0506080:three_prime_UTR |
| ACTTCACTTCAGATGGAGAT+GGG | 0.599710 | 3_4:+52271254 | None:intergenic |
| TTCAAGTTCCTATATAAGTG+TGG | 0.605684 | 3_4:-52274034 | Msa0506080:five_prime_UTR |
| CATGCGTTTAAGCACAACAC+TGG | 0.609073 | 3_4:+52274011 | None:intergenic |
| AAGCCTTGATGACGTTTGAG+GGG | 0.620674 | 3_4:+52271756 | None:intergenic |
| TGAGGGTGCCGAAAACAACA+AGG | 0.623936 | 3_4:-52271804 | Msa0506080:CDS |
| GCTAATCACTGTCACTGACA+AGG | 0.625900 | 3_4:+52270854 | None:intergenic |
| ATCCTGCCATAAAATGAACC+AGG | 0.627528 | 3_4:+52272047 | None:intergenic |
| GAACCCCATAGAAGTAGCAA+GGG | 0.635369 | 3_4:+52272069 | None:intergenic |
| GGGCCCTTGCTACTTCTATG+GGG | 0.635882 | 3_4:-52272072 | Msa0506080:CDS |
| TATTTCTGAATGATCTACCA+AGG | 0.640885 | 3_4:-52272169 | Msa0506080:CDS |
| TCTATGAGGAGTTTAATCAG+TGG | 0.701288 | 3_4:-52270731 | Msa0506080:three_prime_UTR |
| GAGGGTGCCGAAAACAACAA+GGG | 0.702451 | 3_4:-52271803 | Msa0506080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr3_4:52270758-52270777 | None:intergenic | 0.0% |
| !!! | TTAAATCAAACAATTTTTAA+GGG | + | chr3_4:52271390-52271409 | None:intergenic | 10.0% |
| !!! | TGTTTTAATTTTTATTGTTA+TGG | - | chr3_4:52271984-52272003 | Msa0506080:intron | 10.0% |
| !!! | ATTCCATTTTTTTTTTTTTT+TGG | - | chr3_4:52272016-52272035 | Msa0506080:CDS | 10.0% |
| !!! | ATTCAGAAATATTTTATATT+CGG | + | chr3_4:52272409-52272428 | None:intergenic | 10.0% |
| !!! | TATTAATTTTGATTTTTGTA+TGG | + | chr3_4:52274011-52274030 | None:intergenic | 10.0% |
| !! | TAAATATAGAAAAACTAGAA+TGG | - | chr3_4:52270640-52270659 | Msa0506080:three_prime_UTR | 15.0% |
| !!! | ATTGTATTTTATTTTGTTAG+GGG | + | chr3_4:52271108-52271127 | None:intergenic | 15.0% |
| !!! | GATTGTATTTTATTTTGTTA+GGG | + | chr3_4:52271109-52271128 | None:intergenic | 15.0% |
| !!! | AGATTGTATTTTATTTTGTT+AGG | + | chr3_4:52271110-52271129 | None:intergenic | 15.0% |
| !!! | TCAAAAAAAAATATCAGTTT+TGG | + | chr3_4:52271269-52271288 | None:intergenic | 15.0% |
| !!! | GTTAAATCAAACAATTTTTA+AGG | + | chr3_4:52271391-52271410 | None:intergenic | 15.0% |
| !!! | TTTTTTGGTAAAAATCAAAT+GGG | + | chr3_4:52271540-52271559 | None:intergenic | 15.0% |
| !! | AATTAAAAAAAACTGGAAAT+AGG | + | chr3_4:52271800-52271819 | None:intergenic | 15.0% |
| !! | ACACCAAAAAAAAAAAAAAA+TGG | + | chr3_4:52272022-52272041 | None:intergenic | 15.0% |
| !!! | TTCAGAAATATTTTATATTC+GGG | + | chr3_4:52272408-52272427 | None:intergenic | 15.0% |
| !! | TTAAATATGAATATTTGTGT+TGG | - | chr3_4:52272740-52272759 | Msa0506080:intron | 15.0% |
| !!! | ATTTATTTAGTGTTATTTGA+GGG | + | chr3_4:52273175-52273194 | None:intergenic | 15.0% |
| !!! | ATAGAAAAATTTTAACTGAT+CGG | - | chr3_4:52273578-52273597 | Msa0506080:intron | 15.0% |
| !! | ATATAAAATTGAAACCAAAT+AGG | + | chr3_4:52273671-52273690 | None:intergenic | 15.0% |
| !! | ATAACTAACAACATATATAT+TGG | + | chr3_4:52273798-52273817 | None:intergenic | 15.0% |
| !!! | TTGTATTTTATTTTGTTAGG+GGG | + | chr3_4:52271107-52271126 | None:intergenic | 20.0% |
| !!! | GTTTTTTGGTAAAAATCAAA+TGG | + | chr3_4:52271541-52271560 | None:intergenic | 20.0% |
| !!! | AATAGTGAAAATTGGTTTTT+TGG | + | chr3_4:52271555-52271574 | None:intergenic | 20.0% |
| !! | TGAATTCAAATAGTGAAAAT+TGG | + | chr3_4:52271563-52271582 | None:intergenic | 20.0% |
| !! | TTGAATTCACTTAAAATCAA+AGG | - | chr3_4:52271574-52271593 | Msa0506080:intron | 20.0% |
| !!! | CTTGTTTATGTTTTATGAAA+GGG | + | chr3_4:52271683-52271702 | None:intergenic | 20.0% |
| !!! | ACTTGTTTATGTTTTATGAA+AGG | + | chr3_4:52271684-52271703 | None:intergenic | 20.0% |
| !! | AAATATGTTAAGCATATAAC+CGG | - | chr3_4:52272145-52272164 | Msa0506080:CDS | 20.0% |
| !! | ACCATATATATAATATAGAC+CGG | + | chr3_4:52272167-52272186 | None:intergenic | 20.0% |
| !! | AATTGTAAATATATAGCGAA+AGG | - | chr3_4:52272203-52272222 | Msa0506080:CDS | 20.0% |
| !! | TAAAGTGAAATGTATACATT+GGG | + | chr3_4:52272697-52272716 | None:intergenic | 20.0% |
| !! | ATAAAGTGAAATGTATACAT+TGG | + | chr3_4:52272698-52272717 | None:intergenic | 20.0% |
| !! | ATATATATCAAATCACTAAG+AGG | - | chr3_4:52273045-52273064 | Msa0506080:intron | 20.0% |
| !! | TATATATCAAATCACTAAGA+GGG | - | chr3_4:52273046-52273065 | Msa0506080:intron | 20.0% |
| !!! | CATTTATTTAGTGTTATTTG+AGG | + | chr3_4:52273176-52273195 | None:intergenic | 20.0% |
| !!! | CAGTTAAAATTTTTCTATAG+CGG | + | chr3_4:52273576-52273595 | None:intergenic | 20.0% |
| ! | GATATAATATACCTGAAGTA+AGG | + | chr3_4:52270726-52270745 | None:intergenic | 25.0% |
| !! | TTGTTTGATTTAACTGCAAA+TGG | - | chr3_4:52271397-52271416 | Msa0506080:intron | 25.0% |
| !! | TATGTTTTATGAAAGGGAAA+AGG | + | chr3_4:52271677-52271696 | None:intergenic | 25.0% |
| ! | ACCGGTCTATATTATATATA+TGG | - | chr3_4:52272163-52272182 | Msa0506080:CDS | 25.0% |
| ! | ATCAGAAATTATCAAAGTTG+TGG | - | chr3_4:52272350-52272369 | Msa0506080:CDS | 25.0% |
| !! | ACAAAATGCAAACTTTTATC+TGG | + | chr3_4:52272570-52272589 | None:intergenic | 25.0% |
| ! | ATATGAATATTTGTGTTGGA+TGG | - | chr3_4:52272744-52272763 | Msa0506080:intron | 25.0% |
| !! | CAAATGATTCTAACACTTTT+AGG | - | chr3_4:52272925-52272944 | Msa0506080:intron | 25.0% |
| ! | ATCATTTGTCATCAATAAAC+TGG | - | chr3_4:52273375-52273394 | Msa0506080:intron | 25.0% |
| ! | GTATGTTGAAATTATCTATG+AGG | - | chr3_4:52273842-52273861 | Msa0506080:intron | 25.0% |
| ! | TTCAAGTTCCTATATAAGTG+TGG | - | chr3_4:52270553-52270572 | Msa0506080:three_prime_UTR | 30.0% |
| ACTCAAGTACTACATATGAA+TGG | - | chr3_4:52270668-52270687 | Msa0506080:three_prime_UTR | 30.0% | |
| ! | ATATGGCTTAATAGCAGTTT+TGG | - | chr3_4:52271050-52271069 | Msa0506080:CDS | 30.0% |
| TCACAACTTCCTAATACTTA+GGG | + | chr3_4:52271078-52271097 | None:intergenic | 30.0% | |
| ATCACAACTTCCTAATACTT+AGG | + | chr3_4:52271079-52271098 | None:intergenic | 30.0% | |
| AGAGCCAAAACTGATATTAA+AGG | - | chr3_4:52271293-52271312 | Msa0506080:CDS | 30.0% | |
| GAGCCAAAACTGATATTAAA+GGG | - | chr3_4:52271294-52271313 | Msa0506080:CDS | 30.0% | |
| ! | TGACCCTTTAATATCAGTTT+TGG | + | chr3_4:52271300-52271319 | None:intergenic | 30.0% |
| TGTACTTCTATAACTGCAAA+TGG | + | chr3_4:52272059-52272078 | None:intergenic | 30.0% | |
| ! | TATTTCTGAATGATCTACCA+AGG | - | chr3_4:52272418-52272437 | Msa0506080:intron | 30.0% |
| !! | TTTCTCTTTAAAGGTGTCAA+GGG | + | chr3_4:52272469-52272488 | None:intergenic | 30.0% |
| ATCACGTAGTTTCTCTTTAA+AGG | + | chr3_4:52272478-52272497 | None:intergenic | 30.0% | |
| TGATGAATTGGAAACTGAAA+TGG | - | chr3_4:52272494-52272513 | Msa0506080:intron | 30.0% | |
| GATGAATTGGAAACTGAAAT+GGG | - | chr3_4:52272495-52272514 | Msa0506080:intron | 30.0% | |
| ! | AGCACCTTCAACTAATTTTT+GGG | + | chr3_4:52272905-52272924 | None:intergenic | 30.0% |
| !! | CAAAGAGTGTTGTTACATTT+GGG | - | chr3_4:52272972-52272991 | Msa0506080:intron | 30.0% |
| TTGTTACATTTGGGAACTAA+TGG | - | chr3_4:52272981-52273000 | Msa0506080:intron | 30.0% | |
| TATTTGAGGGTCAATGTAAA+AGG | + | chr3_4:52273162-52273181 | None:intergenic | 30.0% | |
| AATTATTCAATGTATGCTCC+AGG | - | chr3_4:52273261-52273280 | Msa0506080:intron | 30.0% | |
| ATTATTCAATGTATGCTCCA+GGG | - | chr3_4:52273262-52273281 | Msa0506080:intron | 30.0% | |
| ATTTGTCATCAATAAACTGG+AGG | - | chr3_4:52273378-52273397 | Msa0506080:intron | 30.0% | |
| CATTTCAGATTCAAAGTCAA+AGG | + | chr3_4:52273443-52273462 | None:intergenic | 30.0% | |
| !! | TAGAGATGATGGATACAATA+TGG | - | chr3_4:52273474-52273493 | Msa0506080:intron | 30.0% |
| TGTCAACAATATGCTAAGAT+TGG | + | chr3_4:52273629-52273648 | None:intergenic | 30.0% | |
| CACATGAATTTCTGTTGTAT+CGG | - | chr3_4:52274044-52274063 | Msa0506080:five_prime_UTR | 30.0% | |
| CACAACTTCCTAATACTTAG+GGG | + | chr3_4:52271077-52271096 | None:intergenic | 35.0% | |
| AATTTGTCGAAATTGACCTG+GGG | + | chr3_4:52271167-52271186 | None:intergenic | 35.0% | |
| GAATTTGTCGAAATTGACCT+GGG | + | chr3_4:52271168-52271187 | None:intergenic | 35.0% | |
| TGAATTTGTCGAAATTGACC+TGG | + | chr3_4:52271169-52271188 | None:intergenic | 35.0% | |
| AAAATCAAATGGGTGTAGGA+TGG | + | chr3_4:52271530-52271549 | None:intergenic | 35.0% | |
| GGTAAAAATCAAATGGGTGT+AGG | + | chr3_4:52271534-52271553 | None:intergenic | 35.0% | |
| ! | AAAGGAAAAAGTGTACTCGT+TGG | + | chr3_4:52271659-52271678 | None:intergenic | 35.0% |
| !! | GTTGCAATATAGGTTGGTTA+TGG | + | chr3_4:52272262-52272281 | None:intergenic | 35.0% |
| GAATGTGTTGCAATATAGGT+TGG | + | chr3_4:52272268-52272287 | None:intergenic | 35.0% | |
| !! | GTTTCTCTTTAAAGGTGTCA+AGG | + | chr3_4:52272470-52272489 | None:intergenic | 35.0% |
| AGAGAAACTACGTGATGAAT+TGG | - | chr3_4:52272482-52272501 | Msa0506080:intron | 35.0% | |
| !!! | AATGTTGCCCTTGTTGTTTT+CGG | + | chr3_4:52272794-52272813 | None:intergenic | 35.0% |
| ! | GAGCACCTTCAACTAATTTT+TGG | + | chr3_4:52272906-52272925 | None:intergenic | 35.0% |
| TAACAACACTCTTTGCTTGA+TGG | + | chr3_4:52272967-52272986 | None:intergenic | 35.0% | |
| !! | GCAAAGAGTGTTGTTACATT+TGG | - | chr3_4:52272971-52272990 | Msa0506080:intron | 35.0% |
| CTGCAAGACCATATCATTAA+GGG | + | chr3_4:52273013-52273032 | None:intergenic | 35.0% | |
| ATGGAGATGGGTAATAGTTA+GGG | + | chr3_4:52273324-52273343 | None:intergenic | 35.0% | |
| AAGTTGGAAGTTCTCAATGA+AGG | - | chr3_4:52273352-52273371 | Msa0506080:intron | 35.0% | |
| !! | TGGAGGTTTCTGAAGTTAAT+TGG | - | chr3_4:52273395-52273414 | Msa0506080:intron | 35.0% |
| TCAGAATCACTTAGAGATGA+TGG | - | chr3_4:52273463-52273482 | Msa0506080:intron | 35.0% | |
| ACAATATGGCACAATGCATT+AGG | - | chr3_4:52273488-52273507 | Msa0506080:intron | 35.0% | |
| CAATATGGCACAATGCATTA+GGG | - | chr3_4:52273489-52273508 | Msa0506080:intron | 35.0% | |
| !! | GGTGAACTTAGTTTTCTCTT+TGG | + | chr3_4:52273608-52273627 | None:intergenic | 35.0% |
| ACCATGAGTAGAAACCTATT+TGG | - | chr3_4:52273654-52273673 | Msa0506080:intron | 35.0% | |
| ACCAAATAGGTTTCTACTCA+TGG | + | chr3_4:52273658-52273677 | None:intergenic | 35.0% | |
| TTAGCTAGGGAATGTTATGA+TGG | - | chr3_4:52273751-52273770 | Msa0506080:intron | 35.0% | |
| TAGCTAGGGAATGTTATGAT+GGG | - | chr3_4:52273752-52273771 | Msa0506080:intron | 35.0% | |
| TCTATGAGGAGTTTAATCAG+TGG | - | chr3_4:52273856-52273875 | Msa0506080:intron | 35.0% | |
| ATTGCCAGTATCCTGAAAAA+GGG | - | chr3_4:52273880-52273899 | Msa0506080:CDS | 35.0% | |
| AACACTGGCCACACTTATAT+AGG | + | chr3_4:52270564-52270583 | None:intergenic | 40.0% | |
| ! | CTACATATGAATGGAAGCGT+TGG | - | chr3_4:52270677-52270696 | Msa0506080:three_prime_UTR | 40.0% |
| TGCAAACAACTCCTTACTTC+AGG | - | chr3_4:52270712-52270731 | Msa0506080:three_prime_UTR | 40.0% | |
| !! | GTTTTGGACCCCTAAGTATT+AGG | - | chr3_4:52271066-52271085 | Msa0506080:CDS | 40.0% |
| ! | TACTGCCCCTTTTGTAGTTT+TGG | - | chr3_4:52271141-52271160 | Msa0506080:CDS | 40.0% |
| CTCGTTGGATCAGTCAATTT+AGG | + | chr3_4:52271644-52271663 | None:intergenic | 40.0% | |
| AGTAAGTTAGCAACCTATCG+AGG | + | chr3_4:52271750-52271769 | None:intergenic | 40.0% | |
| CTATATTGCAACACATTCCC+CGG | - | chr3_4:52272270-52272289 | Msa0506080:CDS | 40.0% | |
| ! | TTTTGGACCAAACACTTTGC+TGG | - | chr3_4:52272323-52272342 | Msa0506080:CDS | 40.0% |
| ! | GATATCACCAGCAAAGTGTT+TGG | + | chr3_4:52272333-52272352 | None:intergenic | 40.0% |
| ACGTTGTTGAAGTCATTCCT+TGG | + | chr3_4:52272438-52272457 | None:intergenic | 40.0% | |
| ! | TTCCTGGTTCATTTTATGGC+AGG | - | chr3_4:52272538-52272557 | Msa0506080:intron | 40.0% |
| ATCCTGCCATAAAATGAACC+AGG | + | chr3_4:52272543-52272562 | None:intergenic | 40.0% | |
| ACTCATCGTACAGTCTTCAA+TGG | - | chr3_4:52272592-52272611 | Msa0506080:intron | 40.0% | |
| CAGTCTTCAATGGCTATCTA+AGG | - | chr3_4:52272602-52272621 | Msa0506080:intron | 40.0% | |
| GTGTTGGATGGTGATTCATT+AGG | - | chr3_4:52272756-52272775 | Msa0506080:intron | 40.0% | |
| GTGATTCATTAGGTTCCTGA+GGG | - | chr3_4:52272766-52272785 | Msa0506080:intron | 40.0% | |
| !! | TAAGCCTTGATGACGTTTGA+GGG | + | chr3_4:52272835-52272854 | None:intergenic | 40.0% |
| !! | CTAATTTTTGGGCACGACAT+TGG | + | chr3_4:52272894-52272913 | None:intergenic | 40.0% |
| CGTGCCCAAAAATTAGTTGA+AGG | - | chr3_4:52272898-52272917 | Msa0506080:intron | 40.0% | |
| CCTGCAAGACCATATCATTA+AGG | + | chr3_4:52273014-52273033 | None:intergenic | 40.0% | |
| ! | CCTTAATGATATGGTCTTGC+AGG | - | chr3_4:52273011-52273030 | Msa0506080:intron | 40.0% |
| TCTCTTCGTTAATGATTCCC+TGG | + | chr3_4:52273282-52273301 | None:intergenic | 40.0% | |
| GATGGAGATGGGTAATAGTT+AGG | + | chr3_4:52273325-52273344 | None:intergenic | 40.0% | |
| ACTTCACTTCAGATGGAGAT+GGG | + | chr3_4:52273336-52273355 | None:intergenic | 40.0% | |
| AACTTCACTTCAGATGGAGA+TGG | + | chr3_4:52273337-52273356 | None:intergenic | 40.0% | |
| ! | ATCTCCATCTGAAGTGAAGT+TGG | - | chr3_4:52273336-52273355 | Msa0506080:intron | 40.0% |
| ACTTCCAACTTCACTTCAGA+TGG | + | chr3_4:52273343-52273362 | None:intergenic | 40.0% | |
| CCAAAGTGACTAACTAGCAA+AGG | + | chr3_4:52273526-52273545 | None:intergenic | 40.0% | |
| CCTTTGCTAGTTAGTCACTT+TGG | - | chr3_4:52273523-52273542 | Msa0506080:intron | 40.0% | |
| ! | CTAGTTAGTCACTTTGGTGA+AGG | - | chr3_4:52273529-52273548 | Msa0506080:intron | 40.0% |
| !! | CTTTGGTGAAGGTGTCATTA+AGG | - | chr3_4:52273540-52273559 | Msa0506080:intron | 40.0% |
| ! | TCAGTGACAGTGATTAGCTA+GGG | - | chr3_4:52273738-52273757 | Msa0506080:intron | 40.0% |
| AGCTAGGGAATGTTATGATG+GGG | - | chr3_4:52273753-52273772 | Msa0506080:intron | 40.0% | |
| CATTGCCAGTATCCTGAAAA+AGG | - | chr3_4:52273879-52273898 | Msa0506080:CDS | 40.0% | |
| CATGCGTTTAAGCACAACAC+TGG | + | chr3_4:52270579-52270598 | None:intergenic | 45.0% | |
| CAAAAGGGGCAGTACTTAGA+GGG | + | chr3_4:52271135-52271154 | None:intergenic | 45.0% | |
| ACAAAAGGGGCAGTACTTAG+AGG | + | chr3_4:52271136-52271155 | None:intergenic | 45.0% | |
| TGGGGCCAAAACTACAAAAG+GGG | + | chr3_4:52271149-52271168 | None:intergenic | 45.0% | |
| CTGGGGCCAAAACTACAAAA+GGG | + | chr3_4:52271150-52271169 | None:intergenic | 45.0% | |
| CGACAAATTCAACGCTGACA+TGG | - | chr3_4:52271178-52271197 | Msa0506080:CDS | 45.0% | |
| CGGGGAATGTGTTGCAATAT+AGG | + | chr3_4:52272272-52272291 | None:intergenic | 45.0% | |
| AAGCTTGGCAATTGCAGACT+TGG | - | chr3_4:52272293-52272312 | Msa0506080:CDS | 45.0% | |
| AGCTTGGCAATTGCAGACTT+GGG | - | chr3_4:52272294-52272313 | Msa0506080:CDS | 45.0% | |
| !! | GCAGACTTGGGTTGTTCTTT+TGG | - | chr3_4:52272306-52272325 | Msa0506080:CDS | 45.0% |
| GAACCCCATAGAAGTAGCAA+GGG | + | chr3_4:52272521-52272540 | None:intergenic | 45.0% | |
| ! | GGGGTTCCTGGTTCATTTTA+TGG | - | chr3_4:52272534-52272553 | Msa0506080:intron | 45.0% |
| GGTGATTCATTAGGTTCCTG+AGG | - | chr3_4:52272765-52272784 | Msa0506080:intron | 45.0% | |
| !! | AAGCCTTGATGACGTTTGAG+GGG | + | chr3_4:52272834-52272853 | None:intergenic | 45.0% |
| !! | GTAAGCCTTGATGACGTTTG+AGG | + | chr3_4:52272836-52272855 | None:intergenic | 45.0% |
| CATTTGGGAACTAATGGCCA+TGG | - | chr3_4:52272987-52273006 | Msa0506080:intron | 45.0% | |
| GACCATATCATTAAGGGCCA+TGG | + | chr3_4:52273007-52273026 | None:intergenic | 45.0% | |
| TCACATAACCAAGTGTGAGC+AGG | - | chr3_4:52273073-52273092 | Msa0506080:intron | 45.0% | |
| AACTAAGAGGGGTTATCACG+TGG | + | chr3_4:52273111-52273130 | None:intergenic | 45.0% | |
| ACGTGATAACCCCTCTTAGT+TGG | - | chr3_4:52273110-52273129 | Msa0506080:intron | 45.0% | |
| TGATAACCCCTCTTAGTTGG+AGG | - | chr3_4:52273113-52273132 | Msa0506080:intron | 45.0% | |
| TTAGCTCCTCCAACTAAGAG+GGG | + | chr3_4:52273122-52273141 | None:intergenic | 45.0% | |
| GTTAGCTCCTCCAACTAAGA+GGG | + | chr3_4:52273123-52273142 | None:intergenic | 45.0% | |
| AGTTAGCTCCTCCAACTAAG+AGG | + | chr3_4:52273124-52273143 | None:intergenic | 45.0% | |
| CTTAGTTGGAGGAGCTAACT+TGG | - | chr3_4:52273124-52273143 | Msa0506080:intron | 45.0% | |
| GCTAATCACTGTCACTGACA+AGG | + | chr3_4:52273736-52273755 | None:intergenic | 45.0% | |
| ! | GTCAGTGACAGTGATTAGCT+AGG | - | chr3_4:52273737-52273756 | Msa0506080:intron | 45.0% |
| !!! | ACCACCCTTTTTCAGGATAC+TGG | + | chr3_4:52273887-52273906 | None:intergenic | 45.0% |
| ! | AGTTTGCACCACCCTTTTTC+AGG | + | chr3_4:52273894-52273913 | None:intergenic | 45.0% |
| !! | TATATATATATGTATATATA+TGG | - | chr3_4:52270793-52270812 | Msa0506080:three_prime_UTR | 5.0% |
| !! | ATTTAATTAAATATTCAAAT+AGG | - | chr3_4:52271335-52271354 | Msa0506080:intron | 5.0% |
| !!! | AATTTTTAATTAAAAAAAAC+TGG | + | chr3_4:52271807-52271826 | None:intergenic | 5.0% |
| CCTGGGGCCAAAACTACAAA+AGG | + | chr3_4:52271151-52271170 | None:intergenic | 50.0% | |
| !!! | CCTTTTGTAGTTTTGGCCCC+AGG | - | chr3_4:52271148-52271167 | Msa0506080:CDS | 50.0% |
| CTAGAGTGCATGACCTCGAT+AGG | - | chr3_4:52271734-52271753 | Msa0506080:CDS | 50.0% | |
| TCTGCAATTGCCAAGCTTCC+GGG | + | chr3_4:52272291-52272310 | None:intergenic | 50.0% | |
| GTCTGCAATTGCCAAGCTTC+CGG | + | chr3_4:52272292-52272311 | None:intergenic | 50.0% | |
| ! | ATGGGCCCTTGCTACTTCTA+TGG | - | chr3_4:52272513-52272532 | Msa0506080:intron | 50.0% |
| ! | TGGGCCCTTGCTACTTCTAT+GGG | - | chr3_4:52272514-52272533 | Msa0506080:intron | 50.0% |
| GGAACCCCATAGAAGTAGCA+AGG | + | chr3_4:52272522-52272541 | None:intergenic | 50.0% | |
| ! | TGCTACTTCTATGGGGTTCC+TGG | - | chr3_4:52272522-52272541 | Msa0506080:intron | 50.0% |
| !!! | TTGTTGTTTTCGGCACCCTC+AGG | + | chr3_4:52272784-52272803 | None:intergenic | 50.0% |
| !! | TGAGGGTGCCGAAAACAACA+AGG | - | chr3_4:52272783-52272802 | Msa0506080:intron | 50.0% |
| !! | GAGGGTGCCGAAAACAACAA+GGG | - | chr3_4:52272784-52272803 | Msa0506080:intron | 50.0% |
| AAGCCCCTCAAACGTCATCA+AGG | - | chr3_4:52272828-52272847 | Msa0506080:intron | 50.0% | |
| GGCCATGGCCCTTAATGATA+TGG | - | chr3_4:52273002-52273021 | Msa0506080:intron | 50.0% | |
| CATAACCAAGTGTGAGCAGG+AGG | - | chr3_4:52273076-52273095 | Msa0506080:intron | 50.0% | |
| CATTACCTCCTGCTCACACT+TGG | + | chr3_4:52273084-52273103 | None:intergenic | 50.0% | |
| GCCAGTATCCTGAAAAAGGG+TGG | - | chr3_4:52273883-52273902 | Msa0506080:CDS | 50.0% | |
| AAGTTGTGTGTGCGCGTGCA+TGG | - | chr3_4:52271842-52271861 | Msa0506080:intron | 55.0% | |
| AGTTGTGTGTGCGCGTGCAT+GGG | - | chr3_4:52271843-52271862 | Msa0506080:intron | 55.0% | |
| CAACACATTCCCCGGAAGCT+TGG | - | chr3_4:52272278-52272297 | Msa0506080:CDS | 55.0% | |
| CTGCAATTGCCAAGCTTCCG+GGG | + | chr3_4:52272290-52272309 | None:intergenic | 55.0% | |
| ! | GGGCCCTTGCTACTTCTATG+GGG | - | chr3_4:52272515-52272534 | Msa0506080:intron | 55.0% |
| GGCACAATGCATTAGGGCTG+TGG | - | chr3_4:52273495-52273514 | Msa0506080:intron | 55.0% | |
| TTGAGGGGCTTGTGCTCGTC+AGG | + | chr3_4:52272819-52272838 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 52270537 | 52274072 | 52270537 | ID=Msa0506080;Name=Msa0506080 |
| chr3_4 | mRNA | 52270537 | 52274072 | 52270537 | ID=Msa0506080-mRNA-1;Parent=Msa0506080;Name=Msa0506080-mRNA-1;_AED=0.23;_eAED=0.23;_QI=122|1|1|1|1|1|4|412|370 |
| chr3_4 | exon | 52270537 | 52271326 | 52270537 | ID=Msa0506080-mRNA-1:exon:11384;Parent=Msa0506080-mRNA-1 |
| chr3_4 | exon | 52271577 | 52271831 | 52271577 | ID=Msa0506080-mRNA-1:exon:11383;Parent=Msa0506080-mRNA-1 |
| chr3_4 | exon | 52271986 | 52272390 | 52271986 | ID=Msa0506080-mRNA-1:exon:11382;Parent=Msa0506080-mRNA-1 |
| chr3_4 | exon | 52273876 | 52274072 | 52273876 | ID=Msa0506080-mRNA-1:exon:11381;Parent=Msa0506080-mRNA-1 |
| chr3_4 | five_prime_UTR | 52273951 | 52274072 | 52273951 | ID=Msa0506080-mRNA-1:five_prime_utr;Parent=Msa0506080-mRNA-1 |
| chr3_4 | CDS | 52273876 | 52273950 | 52273876 | ID=Msa0506080-mRNA-1:cds;Parent=Msa0506080-mRNA-1 |
| chr3_4 | CDS | 52271986 | 52272390 | 52271986 | ID=Msa0506080-mRNA-1:cds;Parent=Msa0506080-mRNA-1 |
| chr3_4 | CDS | 52271577 | 52271831 | 52271577 | ID=Msa0506080-mRNA-1:cds;Parent=Msa0506080-mRNA-1 |
| chr3_4 | CDS | 52270949 | 52271326 | 52270949 | ID=Msa0506080-mRNA-1:cds;Parent=Msa0506080-mRNA-1 |
| chr3_4 | three_prime_UTR | 52270537 | 52270948 | 52270537 | ID=Msa0506080-mRNA-1:three_prime_utr;Parent=Msa0506080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
