Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507080 | KEH15921.1 | 58.772 | 342 | 124 | 7 | 1 | 332 | 49 | 383 | 3.81e-111 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507080 | A0A072TFF2 | 58.772 | 342 | 124 | 7 | 1 | 332 | 49 | 383 | 1.82e-111 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0367980 | Msa0507080 | 0.903279 | 4.086584e-79 | -8.615850e-47 |
| Msa0507080 | Msa0531970 | 0.810475 | 1.131868e-50 | -8.615850e-47 |
| Msa0507080 | Msa0548280 | 0.800737 | 1.252688e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507080 | MtrunA17_Chr8g0364381 | 53.247 | 385 | 118 | 9 | 1 | 332 | 49 | 424 | 1.16e-111 | 331 |
| Msa0507080 | MtrunA17_Chr3g0078891 | 52.320 | 388 | 116 | 7 | 1 | 335 | 1 | 372 | 9.16e-110 | 325 |
| Msa0507080 | MtrunA17_Chr3g0078731 | 52.618 | 382 | 116 | 8 | 12 | 335 | 2 | 376 | 1.35e-108 | 321 |
| Msa0507080 | MtrunA17_Chr3g0078681 | 53.674 | 313 | 82 | 6 | 14 | 268 | 18 | 325 | 2.40e-91 | 276 |
| Msa0507080 | MtrunA17_Chr3g0077781 | 45.358 | 377 | 143 | 10 | 7 | 334 | 4 | 366 | 2.03e-84 | 259 |
| Msa0507080 | MtrunA17_Chr3g0077791 | 46.246 | 333 | 110 | 9 | 7 | 281 | 3 | 324 | 1.34e-73 | 230 |
| Msa0507080 | MtrunA17_Chr2g0331741 | 41.995 | 381 | 152 | 9 | 5 | 333 | 66 | 429 | 2.43e-73 | 233 |
| Msa0507080 | MtrunA17_Chr3g0085901 | 40.327 | 367 | 153 | 7 | 9 | 333 | 2 | 344 | 1.89e-68 | 218 |
| Msa0507080 | MtrunA17_Chr2g0325081 | 40.437 | 366 | 153 | 7 | 20 | 334 | 14 | 365 | 2.20e-68 | 218 |
| Msa0507080 | MtrunA17_Chr3g0078191 | 40.310 | 387 | 153 | 10 | 5 | 334 | 33 | 398 | 3.86e-67 | 216 |
| Msa0507080 | MtrunA17_Chr6g0457681 | 36.598 | 388 | 159 | 10 | 9 | 335 | 44 | 405 | 3.58e-55 | 185 |
| Msa0507080 | MtrunA17_Chr7g0249591 | 36.074 | 377 | 170 | 8 | 7 | 333 | 2 | 357 | 8.29e-55 | 184 |
| Msa0507080 | MtrunA17_Chr5g0427711 | 38.567 | 363 | 160 | 6 | 19 | 334 | 3 | 349 | 2.29e-54 | 181 |
| Msa0507080 | MtrunA17_Chr3g0082431 | 37.017 | 362 | 160 | 8 | 19 | 333 | 10 | 350 | 3.91e-52 | 176 |
| Msa0507080 | MtrunA17_Chr3g0082451 | 36.740 | 362 | 160 | 8 | 19 | 333 | 10 | 349 | 2.78e-51 | 174 |
| Msa0507080 | MtrunA17_Chr8g0366411 | 35.468 | 406 | 164 | 12 | 7 | 333 | 64 | 450 | 2.66e-50 | 173 |
| Msa0507080 | MtrunA17_Chr3g0085941 | 35.544 | 377 | 169 | 12 | 7 | 331 | 2 | 356 | 1.58e-49 | 169 |
| Msa0507080 | MtrunA17_Chr6g0460081 | 34.031 | 382 | 169 | 10 | 8 | 334 | 24 | 377 | 3.89e-49 | 168 |
| Msa0507080 | MtrunA17_Chr4g0070811 | 42.692 | 260 | 126 | 7 | 76 | 333 | 30 | 268 | 2.09e-48 | 163 |
| Msa0507080 | MtrunA17_Chr6g0457621 | 33.770 | 382 | 170 | 10 | 8 | 334 | 24 | 377 | 5.13e-48 | 166 |
| Msa0507080 | MtrunA17_Chr5g0424761 | 36.000 | 375 | 174 | 9 | 5 | 333 | 3 | 357 | 2.74e-46 | 160 |
| Msa0507080 | MtrunA17_Chr4g0049031 | 32.921 | 404 | 178 | 12 | 1 | 333 | 11 | 392 | 1.51e-44 | 159 |
| Msa0507080 | MtrunA17_Chr7g0252201 | 37.801 | 291 | 114 | 9 | 5 | 245 | 2 | 275 | 6.77e-44 | 152 |
| Msa0507080 | MtrunA17_Chr3g0132661 | 33.010 | 412 | 164 | 15 | 9 | 333 | 15 | 401 | 5.26e-43 | 153 |
| Msa0507080 | MtrunA17_Chr4g0048151 | 30.714 | 420 | 182 | 11 | 2 | 333 | 12 | 410 | 1.54e-41 | 150 |
| Msa0507080 | MtrunA17_Chr3g0085961 | 31.078 | 399 | 183 | 10 | 8 | 333 | 4 | 383 | 2.20e-41 | 148 |
| Msa0507080 | MtrunA17_Chr7g0221741 | 34.054 | 370 | 186 | 12 | 5 | 333 | 2 | 354 | 1.45e-40 | 145 |
| Msa0507080 | MtrunA17_Chr7g0221701 | 34.218 | 339 | 146 | 8 | 43 | 333 | 5 | 314 | 1.87e-40 | 144 |
| Msa0507080 | MtrunA17_Chr6g0457641 | 33.770 | 305 | 146 | 5 | 19 | 281 | 51 | 341 | 1.43e-39 | 142 |
| Msa0507080 | MtrunA17_Chr4g0049121 | 30.166 | 421 | 192 | 13 | 2 | 330 | 13 | 423 | 6.90e-39 | 144 |
| Msa0507080 | MtrunA17_Chr4g0049111 | 31.215 | 362 | 173 | 9 | 7 | 314 | 30 | 369 | 7.77e-39 | 143 |
| Msa0507080 | MtrunA17_Chr3g0091201 | 34.557 | 327 | 154 | 6 | 1 | 281 | 11 | 323 | 1.10e-38 | 139 |
| Msa0507080 | MtrunA17_Chr1g0170171 | 36.149 | 296 | 141 | 8 | 9 | 281 | 16 | 286 | 7.11e-38 | 137 |
| Msa0507080 | MtrunA17_Chr3g0091211 | 38.868 | 265 | 133 | 8 | 9 | 265 | 2 | 245 | 7.23e-38 | 135 |
| Msa0507080 | MtrunA17_Chr4g0005311 | 31.204 | 407 | 178 | 10 | 9 | 334 | 15 | 400 | 9.50e-38 | 139 |
| Msa0507080 | MtrunA17_Chr5g0419301 | 30.198 | 404 | 179 | 10 | 11 | 330 | 21 | 405 | 1.06e-37 | 139 |
| Msa0507080 | MtrunA17_Chr6g0486911 | 30.843 | 415 | 172 | 11 | 8 | 330 | 10 | 401 | 1.09e-37 | 139 |
| Msa0507080 | MtrunA17_Chr1g0199541 | 34.586 | 266 | 108 | 6 | 6 | 221 | 11 | 260 | 1.63e-37 | 135 |
| Msa0507080 | MtrunA17_Chr3g0084261 | 32.292 | 384 | 175 | 8 | 19 | 333 | 25 | 392 | 6.38e-37 | 136 |
| Msa0507080 | MtrunA17_Chr3g0084241 | 32.902 | 386 | 161 | 10 | 19 | 331 | 7 | 367 | 9.98e-37 | 135 |
| Msa0507080 | MtrunA17_Chr4g0023631 | 31.172 | 401 | 177 | 13 | 9 | 334 | 8 | 384 | 3.08e-36 | 136 |
| Msa0507080 | MtrunA17_Chr4g0049041 | 29.904 | 418 | 178 | 12 | 9 | 332 | 14 | 410 | 1.05e-35 | 134 |
| Msa0507080 | MtrunA17_Chr5g0440681 | 29.397 | 398 | 165 | 11 | 9 | 333 | 15 | 369 | 1.57e-35 | 132 |
| Msa0507080 | MtrunA17_Chr5g0419311 | 31.056 | 322 | 153 | 8 | 11 | 282 | 21 | 323 | 1.62e-34 | 129 |
| Msa0507080 | MtrunA17_Chr4g0049071 | 28.463 | 397 | 177 | 9 | 20 | 330 | 50 | 425 | 5.37e-34 | 129 |
| Msa0507080 | MtrunA17_Chr6g0486921 | 29.425 | 435 | 177 | 14 | 8 | 332 | 7 | 421 | 1.99e-33 | 127 |
| Msa0507080 | MtrunA17_Chr6g0460041 | 31.900 | 279 | 134 | 5 | 7 | 243 | 28 | 292 | 2.58e-31 | 119 |
| Msa0507080 | MtrunA17_Chr3g0104721 | 32.308 | 260 | 108 | 6 | 15 | 221 | 24 | 268 | 4.84e-31 | 119 |
| Msa0507080 | MtrunA17_Chr8g0362531 | 28.967 | 397 | 198 | 11 | 6 | 335 | 21 | 400 | 5.36e-31 | 120 |
| Msa0507080 | MtrunA17_Chr3g0085951 | 30.500 | 400 | 172 | 13 | 18 | 334 | 1 | 377 | 7.19e-31 | 120 |
| Msa0507080 | MtrunA17_Chr2g0331731 | 41.304 | 184 | 94 | 5 | 153 | 334 | 2 | 173 | 9.07e-30 | 112 |
| Msa0507080 | MtrunA17_Chr8g0361351 | 27.720 | 386 | 199 | 11 | 11 | 335 | 2 | 368 | 1.22e-28 | 114 |
| Msa0507080 | MtrunA17_Chr5g0424701 | 35.514 | 214 | 92 | 4 | 19 | 188 | 16 | 227 | 2.46e-28 | 110 |
| Msa0507080 | MtrunA17_Chr3g0084231 | 32.181 | 376 | 152 | 12 | 19 | 333 | 24 | 357 | 3.95e-28 | 112 |
| Msa0507080 | MtrunA17_Chr3g0091161 | 32.840 | 338 | 149 | 11 | 19 | 305 | 14 | 324 | 6.83e-27 | 109 |
| Msa0507080 | MtrunA17_Chr4g0039521 | 35.616 | 219 | 114 | 3 | 12 | 205 | 8 | 224 | 3.99e-26 | 103 |
| Msa0507080 | MtrunA17_Chr7g0220351 | 28.750 | 400 | 196 | 12 | 4 | 334 | 132 | 511 | 1.67e-24 | 103 |
| Msa0507080 | MtrunA17_Chr4g0011401 | 29.867 | 375 | 180 | 13 | 19 | 330 | 145 | 499 | 3.11e-24 | 103 |
| Msa0507080 | MtrunA17_Chr1g0181881 | 46.667 | 105 | 56 | 0 | 7 | 111 | 6 | 110 | 2.21e-23 | 94.7 |
| Msa0507080 | MtrunA17_Chr4g0011321 | 31.716 | 268 | 136 | 8 | 3 | 244 | 15 | 261 | 5.59e-23 | 96.7 |
| Msa0507080 | MtrunA17_Chr6g0488371 | 31.507 | 219 | 89 | 6 | 6 | 169 | 2 | 214 | 7.47e-23 | 95.1 |
| Msa0507080 | MtrunA17_Chr4g0049531 | 33.200 | 250 | 108 | 8 | 119 | 330 | 109 | 337 | 1.57e-22 | 97.1 |
| Msa0507080 | MtrunA17_Chr6g0488401 | 29.551 | 379 | 185 | 14 | 7 | 326 | 2 | 357 | 1.75e-22 | 97.1 |
| Msa0507080 | MtrunA17_Chr5g0404531 | 38.503 | 187 | 89 | 7 | 119 | 305 | 26 | 186 | 2.14e-22 | 92.8 |
| Msa0507080 | MtrunA17_Chr3g0084251 | 35.484 | 217 | 88 | 4 | 19 | 187 | 25 | 237 | 1.29e-21 | 95.5 |
| Msa0507080 | MtrunA17_Chr3g0084251 | 34.025 | 241 | 116 | 8 | 120 | 333 | 346 | 570 | 9.81e-19 | 87.0 |
| Msa0507080 | MtrunA17_Chr4g0011331 | 35.909 | 220 | 90 | 7 | 9 | 183 | 145 | 358 | 1.60e-21 | 94.7 |
| Msa0507080 | MtrunA17_Chr3g0099441 | 30.851 | 282 | 138 | 11 | 86 | 333 | 189 | 447 | 2.97e-21 | 94.4 |
| Msa0507080 | MtrunA17_Chr3g0099441 | 35.417 | 144 | 82 | 2 | 8 | 151 | 16 | 148 | 3.33e-15 | 76.3 |
| Msa0507080 | MtrunA17_Chr6g0460051 | 53.247 | 77 | 36 | 0 | 19 | 95 | 51 | 127 | 3.08e-20 | 85.9 |
| Msa0507080 | MtrunA17_Chr3g0104731 | 51.852 | 81 | 39 | 0 | 15 | 95 | 15 | 95 | 4.17e-20 | 88.6 |
| Msa0507080 | MtrunA17_Chr4g0023731 | 38.281 | 128 | 75 | 3 | 6 | 131 | 8 | 133 | 9.77e-20 | 86.3 |
| Msa0507080 | MtrunA17_Chr4g0058061 | 27.108 | 332 | 172 | 8 | 3 | 288 | 143 | 450 | 4.15e-19 | 87.8 |
| Msa0507080 | MtrunA17_Chr3g0099431 | 32.749 | 171 | 95 | 5 | 112 | 281 | 6 | 157 | 9.08e-19 | 82.0 |
| Msa0507080 | MtrunA17_Chr4g0049131 | 54.795 | 73 | 33 | 0 | 18 | 90 | 5 | 77 | 2.74e-17 | 77.4 |
| Msa0507080 | MtrunA17_Chr4g0049061 | 48.684 | 76 | 39 | 0 | 11 | 86 | 26 | 101 | 3.51e-17 | 77.8 |
| Msa0507080 | MtrunA17_Chr3g0099461 | 38.211 | 123 | 67 | 1 | 1 | 114 | 9 | 131 | 2.60e-16 | 79.3 |
| Msa0507080 | MtrunA17_Chr3g0099461 | 27.434 | 226 | 128 | 5 | 112 | 333 | 218 | 411 | 1.42e-12 | 68.2 |
| Msa0507080 | MtrunA17_Chr3g0087471 | 42.202 | 109 | 58 | 2 | 5 | 108 | 7 | 115 | 3.27e-16 | 74.3 |
| Msa0507080 | MtrunA17_Chr8g0361241 | 50.000 | 76 | 38 | 0 | 20 | 95 | 12 | 87 | 1.30e-15 | 76.3 |
| Msa0507080 | MtrunA17_Chr7g0269551 | 35.714 | 126 | 62 | 3 | 119 | 244 | 4 | 110 | 1.10e-14 | 70.1 |
| Msa0507080 | MtrunA17_Chr1g0188701 | 30.366 | 191 | 88 | 5 | 19 | 164 | 3 | 193 | 2.99e-14 | 72.0 |
| Msa0507080 | MtrunA17_Chr3g0100081 | 38.889 | 90 | 54 | 1 | 1 | 90 | 7 | 95 | 4.47e-14 | 72.4 |
| Msa0507080 | MtrunA17_Chr8g0342451 | 43.662 | 71 | 40 | 0 | 19 | 89 | 35 | 105 | 1.08e-13 | 71.6 |
| Msa0507080 | MtrunA17_Chr5g0434961 | 66.038 | 53 | 16 | 1 | 94 | 146 | 62 | 112 | 2.49e-13 | 65.9 |
| Msa0507080 | MtrunA17_Chr4g0049091 | 30.579 | 242 | 101 | 9 | 129 | 330 | 99 | 313 | 2.56e-13 | 70.1 |
| Msa0507080 | MtrunA17_Chr6g0452031 | 41.758 | 91 | 51 | 2 | 5 | 95 | 2 | 90 | 7.54e-13 | 68.6 |
| Msa0507080 | MtrunA17_Chr2g0330161 | 36.364 | 99 | 58 | 2 | 10 | 105 | 25 | 121 | 1.04e-12 | 68.6 |
| Msa0507080 | MtrunA17_Chr2g0278131 | 43.662 | 71 | 39 | 1 | 8 | 78 | 3 | 72 | 4.05e-12 | 61.2 |
| Msa0507080 | MtrunA17_Chr4g0049051 | 32.168 | 143 | 78 | 3 | 136 | 278 | 2 | 125 | 5.12e-12 | 63.2 |
| Msa0507080 | MtrunA17_Chr1g0170181 | 33.772 | 228 | 128 | 6 | 107 | 333 | 41 | 246 | 1.23e-11 | 63.9 |
| Msa0507080 | MtrunA17_Chr7g0236221 | 42.105 | 76 | 44 | 0 | 19 | 94 | 8 | 83 | 1.51e-11 | 61.2 |
| Msa0507080 | MtrunA17_Chr7g0227621 | 43.284 | 67 | 38 | 0 | 20 | 86 | 11 | 77 | 2.64e-11 | 60.1 |
| Msa0507080 | MtrunA17_Chr3g0136291 | 42.857 | 77 | 43 | 1 | 20 | 95 | 14 | 90 | 7.19e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCATTATAATTCATTTA+AGG | 0.131018 | 3_4:+54034533 | Msa0507080:CDS |
| TATTGCAGCTTCTATGATTT+TGG | 0.167771 | 3_4:+54034302 | Msa0507080:CDS |
| CAAGTTTGTTTCTCTGAATA+AGG | 0.185183 | 3_4:-54034758 | None:intergenic |
| GATTATATTCCAAAACATTT+TGG | 0.187905 | 3_4:+54034237 | Msa0507080:CDS |
| CCAGAGATTGATCCATCTTT+TGG | 0.247931 | 3_4:-54033574 | None:intergenic |
| TTGACTTCTCTCAGTCTTGC+TGG | 0.274112 | 3_4:+54033853 | Msa0507080:intron |
| AAAGATATGGAAATCGGTTT+TGG | 0.288468 | 3_4:-54034160 | None:intergenic |
| GTCTTGCTTCCAAAATGTTT+TGG | 0.296893 | 3_4:-54034246 | None:intergenic |
| ATCCTCTTTGGCGTTCAAAA+AGG | 0.317183 | 3_4:-54033532 | None:intergenic |
| CTCTATTCAACTGGCTGGCT+TGG | 0.337888 | 3_4:+54034340 | Msa0507080:CDS |
| CTTGAAGTTGTTGAAATTAG+TGG | 0.343944 | 3_4:+54034578 | Msa0507080:CDS |
| CAACTTGTTAAATGCGGAAA+AGG | 0.344718 | 3_4:-54034007 | None:intergenic |
| GCAAGTTTGAACATCCTCTT+TGG | 0.352463 | 3_4:-54033544 | None:intergenic |
| CCTTACGTTGCCTCTTACGT+TGG | 0.392713 | 3_4:-54033446 | None:intergenic |
| ATGTTAGATATAGATTCTTT+TGG | 0.393316 | 3_4:+54034713 | Msa0507080:three_prime_UTR |
| AACTTCAAGTTATGCAAGTA+AGG | 0.394364 | 3_4:-54034564 | None:intergenic |
| ACCATCATCATTACAACAAA+AGG | 0.417640 | 3_4:-54033974 | None:intergenic |
| AAGTTTGTTTCTCTGAATAA+GGG | 0.417966 | 3_4:-54034757 | None:intergenic |
| ACCAATCAACTCTATTCAAC+TGG | 0.421253 | 3_4:+54034331 | Msa0507080:CDS |
| AACTTGTTAAATGCGGAAAA+GGG | 0.422883 | 3_4:-54034006 | None:intergenic |
| TCAAGACAGGCTCAGTGAAT+TGG | 0.423260 | 3_4:+54033482 | Msa0507080:CDS |
| CCAAAAGATGGATCAATCTC+TGG | 0.439047 | 3_4:+54033574 | Msa0507080:CDS |
| GCCAGTTGAATAGAGTTGAT+TGG | 0.444802 | 3_4:-54034332 | None:intergenic |
| TTTCATGTACCAATCTTGTC+AGG | 0.451651 | 3_4:+54034088 | Msa0507080:CDS |
| AGGCAAGGTGCTTCAGAGAC+AGG | 0.453076 | 3_4:-54033954 | None:intergenic |
| AGAGACAGGGTGGTTAATGC+TGG | 0.459591 | 3_4:-54033940 | None:intergenic |
| AAAACGTAGACATGAATTGT+TGG | 0.465572 | 3_4:-54033653 | None:intergenic |
| AATAGTTAACCTGACAAGAT+TGG | 0.490172 | 3_4:-54034097 | None:intergenic |
| CATCGGTAGGTACCGCAAAA+CGG | 0.510977 | 3_4:-54034608 | None:intergenic |
| TGAATTGTTGGAAACTTTCG+AGG | 0.514975 | 3_4:-54033641 | None:intergenic |
| AACTCACCCTCGGCAAAGGT+TGG | 0.517086 | 3_4:+54034651 | Msa0507080:CDS |
| TCAAAACTCACCCTCGGCAA+AGG | 0.527468 | 3_4:+54034647 | Msa0507080:CDS |
| AAGAGCATCTGTACGACGCA+TGG | 0.539444 | 3_4:-54034133 | None:intergenic |
| AGACACGAAGCCAACGTAAG+AGG | 0.545941 | 3_4:+54033436 | Msa0507080:CDS |
| ATGAATTATAATGAATGCGG+TGG | 0.555694 | 3_4:-54034527 | None:intergenic |
| TTTGCTTCAAAACTCACCCT+CGG | 0.556358 | 3_4:+54034641 | Msa0507080:CDS |
| ATCAACTCTATTCAACTGGC+TGG | 0.560237 | 3_4:+54034335 | Msa0507080:CDS |
| ACGACAGACAAATTCAAGAC+AGG | 0.566363 | 3_4:+54033469 | Msa0507080:CDS |
| AAAACAAGGGAATGAAGTGT+TGG | 0.566708 | 3_4:-54034204 | None:intergenic |
| CCAACGTAAGAGGCAACGTA+AGG | 0.571460 | 3_4:+54033446 | Msa0507080:CDS |
| CATCGACCAATGTGTACTCA+TGG | 0.575088 | 3_4:+54034041 | Msa0507080:CDS |
| CATAGTACTTAATGTAAGAG+TGG | 0.576240 | 3_4:-54033607 | None:intergenic |
| CACTAAGAGCAGCTAAAGTG+AGG | 0.580948 | 3_4:-54034386 | None:intergenic |
| AATCACGACCAGTCAAAACA+AGG | 0.584573 | 3_4:-54034218 | None:intergenic |
| CAAAGGTTGGCTTCATCAAG+AGG | 0.585363 | 3_4:+54034664 | Msa0507080:CDS |
| GAGACAGGGTGGTTAATGCT+GGG | 0.588135 | 3_4:-54033939 | None:intergenic |
| AGTATTCAACTTGTTAAATG+CGG | 0.588783 | 3_4:-54034013 | None:intergenic |
| GGCAAGGTGCTTCAGAGACA+GGG | 0.593931 | 3_4:-54033953 | None:intergenic |
| TGCGGTACCTACCGATGAGG+TGG | 0.594918 | 3_4:+54034614 | Msa0507080:CDS |
| ATGAAGCCAACCTTTGCCGA+GGG | 0.595854 | 3_4:-54034657 | None:intergenic |
| GATGAAGCCAACCTTTGCCG+AGG | 0.606925 | 3_4:-54034658 | None:intergenic |
| ACTTGTTAAATGCGGAAAAG+GGG | 0.607680 | 3_4:-54034005 | None:intergenic |
| ATCGACCAATGTGTACTCAT+GGG | 0.612154 | 3_4:+54034042 | Msa0507080:CDS |
| ACTTCAAGTTATGCAAGTAA+GGG | 0.617231 | 3_4:-54034563 | None:intergenic |
| GTAAATATTTGTTGCCAGCG+AGG | 0.623755 | 3_4:-54033895 | None:intergenic |
| CATCATTACAACAAAAGGCA+AGG | 0.625820 | 3_4:-54033969 | None:intergenic |
| ACTTCTGTGCAAAGAGAGTG+TGG | 0.632028 | 3_4:-54033704 | None:intergenic |
| TAAATGAATTATAATGAATG+CGG | 0.647864 | 3_4:-54034530 | None:intergenic |
| TATGTGAATGAGAAGACAGT+CGG | 0.648020 | 3_4:-54033505 | None:intergenic |
| GGATATCAGTTGAGTGATCG+CGG | 0.649463 | 3_4:-54033683 | None:intergenic |
| ATCACGACCAGTCAAAACAA+GGG | 0.650578 | 3_4:-54034217 | None:intergenic |
| GAATTGTTGGAAACTTTCGA+GGG | 0.664107 | 3_4:-54033640 | None:intergenic |
| ACTAAGAGCAGCTAAAGTGA+GGG | 0.681494 | 3_4:-54034385 | None:intergenic |
| TATCACCCATGAGTACACAT+TGG | 0.703280 | 3_4:-54034047 | None:intergenic |
| AAGGTGCTTCAGAGACAGGG+TGG | 0.729573 | 3_4:-54033950 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTATAATCTTTACATAT+AGG | - | chr3_4:54033747-54033766 | None:intergenic | 15.0% |
| !! | TAAATGAATTATAATGAATG+CGG | - | chr3_4:54034533-54034552 | None:intergenic | 15.0% |
| !! | CATTCATTATAATTCATTTA+AGG | + | chr3_4:54034533-54034552 | Msa0507080:CDS | 15.0% |
| !! | ATTCTATAATCTTTACATAT+AGG | - | chr3_4:54033747-54033766 | None:intergenic | 15.0% |
| !! | TAAATGAATTATAATGAATG+CGG | - | chr3_4:54034533-54034552 | None:intergenic | 15.0% |
| !! | CATTCATTATAATTCATTTA+AGG | + | chr3_4:54034533-54034552 | Msa0507080:CDS | 15.0% |
| !!! | GATTATATTCCAAAACATTT+TGG | + | chr3_4:54034237-54034256 | Msa0507080:CDS | 20.0% |
| !! | ATCTAACATTAAAAAGTAGT+TGG | - | chr3_4:54034702-54034721 | None:intergenic | 20.0% |
| !!! | ATGTTAGATATAGATTCTTT+TGG | + | chr3_4:54034713-54034732 | Msa0507080:three_prime_UTR | 20.0% |
| !!! | GATTATATTCCAAAACATTT+TGG | + | chr3_4:54034237-54034256 | Msa0507080:CDS | 20.0% |
| !! | ATCTAACATTAAAAAGTAGT+TGG | - | chr3_4:54034702-54034721 | None:intergenic | 20.0% |
| !!! | ATGTTAGATATAGATTCTTT+TGG | + | chr3_4:54034713-54034732 | Msa0507080:three_prime_UTR | 20.0% |
| !!! | AGTATTCAACTTGTTAAATG+CGG | - | chr3_4:54034016-54034035 | None:intergenic | 25.0% |
| ! | TCCAAAAAAGATATGGAAAT+CGG | - | chr3_4:54034169-54034188 | None:intergenic | 25.0% |
| !! | AAGTTTGTTTCTCTGAATAA+GGG | - | chr3_4:54034760-54034779 | None:intergenic | 25.0% |
| !!! | AGTATTCAACTTGTTAAATG+CGG | - | chr3_4:54034016-54034035 | None:intergenic | 25.0% |
| ! | TCCAAAAAAGATATGGAAAT+CGG | - | chr3_4:54034169-54034188 | None:intergenic | 25.0% |
| !! | AAGTTTGTTTCTCTGAATAA+GGG | - | chr3_4:54034760-54034779 | None:intergenic | 25.0% |
| ! | CTTGCATTTTATCCAAAAGA+TGG | + | chr3_4:54033562-54033581 | Msa0507080:CDS | 30.0% |
| CATAGTACTTAATGTAAGAG+TGG | - | chr3_4:54033610-54033629 | None:intergenic | 30.0% | |
| AAAACGTAGACATGAATTGT+TGG | - | chr3_4:54033656-54033675 | None:intergenic | 30.0% | |
| ! | ATTTTATGATTTTTCCTCGC+TGG | + | chr3_4:54033881-54033900 | Msa0507080:CDS | 30.0% |
| ACCATCATCATTACAACAAA+AGG | - | chr3_4:54033977-54033996 | None:intergenic | 30.0% | |
| !! | AACTTGTTAAATGCGGAAAA+GGG | - | chr3_4:54034009-54034028 | None:intergenic | 30.0% |
| AATAGTTAACCTGACAAGAT+TGG | - | chr3_4:54034100-54034119 | None:intergenic | 30.0% | |
| !! | AAAGATATGGAAATCGGTTT+TGG | - | chr3_4:54034163-54034182 | None:intergenic | 30.0% |
| !!! | ACCGATTTCCATATCTTTTT+TGG | + | chr3_4:54034165-54034184 | Msa0507080:CDS | 30.0% |
| ACTCGATTCCAAAAAAGATA+TGG | - | chr3_4:54034176-54034195 | None:intergenic | 30.0% | |
| ! | TATTGCAGCTTCTATGATTT+TGG | + | chr3_4:54034302-54034321 | Msa0507080:CDS | 30.0% |
| TTGCAAGACATACATATTCT+TGG | - | chr3_4:54034471-54034490 | None:intergenic | 30.0% | |
| ATGAATTATAATGAATGCGG+TGG | - | chr3_4:54034530-54034549 | None:intergenic | 30.0% | |
| ! | ACTTCAAGTTATGCAAGTAA+GGG | - | chr3_4:54034566-54034585 | None:intergenic | 30.0% |
| ! | AACTTCAAGTTATGCAAGTA+AGG | - | chr3_4:54034567-54034586 | None:intergenic | 30.0% |
| CTTGAAGTTGTTGAAATTAG+TGG | + | chr3_4:54034578-54034597 | Msa0507080:CDS | 30.0% | |
| ! | CAAGTTTGTTTCTCTGAATA+AGG | - | chr3_4:54034761-54034780 | None:intergenic | 30.0% |
| ! | CTTGCATTTTATCCAAAAGA+TGG | + | chr3_4:54033562-54033581 | Msa0507080:CDS | 30.0% |
| CATAGTACTTAATGTAAGAG+TGG | - | chr3_4:54033610-54033629 | None:intergenic | 30.0% | |
| AAAACGTAGACATGAATTGT+TGG | - | chr3_4:54033656-54033675 | None:intergenic | 30.0% | |
| ! | ATTTTATGATTTTTCCTCGC+TGG | + | chr3_4:54033881-54033900 | Msa0507080:CDS | 30.0% |
| ACCATCATCATTACAACAAA+AGG | - | chr3_4:54033977-54033996 | None:intergenic | 30.0% | |
| !! | AACTTGTTAAATGCGGAAAA+GGG | - | chr3_4:54034009-54034028 | None:intergenic | 30.0% |
| AATAGTTAACCTGACAAGAT+TGG | - | chr3_4:54034100-54034119 | None:intergenic | 30.0% | |
| !! | AAAGATATGGAAATCGGTTT+TGG | - | chr3_4:54034163-54034182 | None:intergenic | 30.0% |
| !!! | ACCGATTTCCATATCTTTTT+TGG | + | chr3_4:54034165-54034184 | Msa0507080:CDS | 30.0% |
| ACTCGATTCCAAAAAAGATA+TGG | - | chr3_4:54034176-54034195 | None:intergenic | 30.0% | |
| ! | TATTGCAGCTTCTATGATTT+TGG | + | chr3_4:54034302-54034321 | Msa0507080:CDS | 30.0% |
| TTGCAAGACATACATATTCT+TGG | - | chr3_4:54034471-54034490 | None:intergenic | 30.0% | |
| ATGAATTATAATGAATGCGG+TGG | - | chr3_4:54034530-54034549 | None:intergenic | 30.0% | |
| ! | ACTTCAAGTTATGCAAGTAA+GGG | - | chr3_4:54034566-54034585 | None:intergenic | 30.0% |
| ! | AACTTCAAGTTATGCAAGTA+AGG | - | chr3_4:54034567-54034586 | None:intergenic | 30.0% |
| CTTGAAGTTGTTGAAATTAG+TGG | + | chr3_4:54034578-54034597 | Msa0507080:CDS | 30.0% | |
| ! | CAAGTTTGTTTCTCTGAATA+AGG | - | chr3_4:54034761-54034780 | None:intergenic | 30.0% |
| TATGTGAATGAGAAGACAGT+CGG | - | chr3_4:54033508-54033527 | None:intergenic | 35.0% | |
| GAATTGTTGGAAACTTTCGA+GGG | - | chr3_4:54033643-54033662 | None:intergenic | 35.0% | |
| TGAATTGTTGGAAACTTTCG+AGG | - | chr3_4:54033644-54033663 | None:intergenic | 35.0% | |
| !! | CGTAATTGATTCGAAAGTGT+TGG | - | chr3_4:54033789-54033808 | None:intergenic | 35.0% |
| CATCATTACAACAAAAGGCA+AGG | - | chr3_4:54033972-54033991 | None:intergenic | 35.0% | |
| !! | GCCTTTTGTTGTAATGATGA+TGG | + | chr3_4:54033973-54033992 | Msa0507080:CDS | 35.0% |
| ! | ACTTGTTAAATGCGGAAAAG+GGG | - | chr3_4:54034008-54034027 | None:intergenic | 35.0% |
| !! | CAACTTGTTAAATGCGGAAA+AGG | - | chr3_4:54034010-54034029 | None:intergenic | 35.0% |
| TTTCATGTACCAATCTTGTC+AGG | + | chr3_4:54034088-54034107 | Msa0507080:CDS | 35.0% | |
| AAAACAAGGGAATGAAGTGT+TGG | - | chr3_4:54034207-54034226 | None:intergenic | 35.0% | |
| ! | GTCTTGCTTCCAAAATGTTT+TGG | - | chr3_4:54034249-54034268 | None:intergenic | 35.0% |
| ACCAATCAACTCTATTCAAC+TGG | + | chr3_4:54034331-54034350 | Msa0507080:CDS | 35.0% | |
| !! | CTAAGCAATCAGGAAGTATT+AGG | - | chr3_4:54034499-54034518 | None:intergenic | 35.0% |
| CTAATACTTCCTGATTGCTT+AGG | + | chr3_4:54034497-54034516 | Msa0507080:intron | 35.0% | |
| TATGTGAATGAGAAGACAGT+CGG | - | chr3_4:54033508-54033527 | None:intergenic | 35.0% | |
| GAATTGTTGGAAACTTTCGA+GGG | - | chr3_4:54033643-54033662 | None:intergenic | 35.0% | |
| TGAATTGTTGGAAACTTTCG+AGG | - | chr3_4:54033644-54033663 | None:intergenic | 35.0% | |
| !! | CGTAATTGATTCGAAAGTGT+TGG | - | chr3_4:54033789-54033808 | None:intergenic | 35.0% |
| CATCATTACAACAAAAGGCA+AGG | - | chr3_4:54033972-54033991 | None:intergenic | 35.0% | |
| !! | GCCTTTTGTTGTAATGATGA+TGG | + | chr3_4:54033973-54033992 | Msa0507080:CDS | 35.0% |
| ! | ACTTGTTAAATGCGGAAAAG+GGG | - | chr3_4:54034008-54034027 | None:intergenic | 35.0% |
| !! | CAACTTGTTAAATGCGGAAA+AGG | - | chr3_4:54034010-54034029 | None:intergenic | 35.0% |
| TTTCATGTACCAATCTTGTC+AGG | + | chr3_4:54034088-54034107 | Msa0507080:CDS | 35.0% | |
| AAAACAAGGGAATGAAGTGT+TGG | - | chr3_4:54034207-54034226 | None:intergenic | 35.0% | |
| ! | GTCTTGCTTCCAAAATGTTT+TGG | - | chr3_4:54034249-54034268 | None:intergenic | 35.0% |
| ACCAATCAACTCTATTCAAC+TGG | + | chr3_4:54034331-54034350 | Msa0507080:CDS | 35.0% | |
| !! | CTAAGCAATCAGGAAGTATT+AGG | - | chr3_4:54034499-54034518 | None:intergenic | 35.0% |
| CTAATACTTCCTGATTGCTT+AGG | + | chr3_4:54034497-54034516 | Msa0507080:intron | 35.0% | |
| ACGACAGACAAATTCAAGAC+AGG | + | chr3_4:54033469-54033488 | Msa0507080:CDS | 40.0% | |
| ATCCTCTTTGGCGTTCAAAA+AGG | - | chr3_4:54033535-54033554 | None:intergenic | 40.0% | |
| GCAAGTTTGAACATCCTCTT+TGG | - | chr3_4:54033547-54033566 | None:intergenic | 40.0% | |
| ! | CCAGAGATTGATCCATCTTT+TGG | - | chr3_4:54033577-54033596 | None:intergenic | 40.0% |
| CCAAAAGATGGATCAATCTC+TGG | + | chr3_4:54033574-54033593 | Msa0507080:CDS | 40.0% | |
| GTGTTGGACATTGTGTGAAA+AGG | - | chr3_4:54033773-54033792 | None:intergenic | 40.0% | |
| ! | TGAGATGAGAAGAAGCATGA+TGG | - | chr3_4:54033829-54033848 | None:intergenic | 40.0% |
| ! | GTAAATATTTGTTGCCAGCG+AGG | - | chr3_4:54033898-54033917 | None:intergenic | 40.0% |
| ATCGACCAATGTGTACTCAT+GGG | + | chr3_4:54034042-54034061 | Msa0507080:CDS | 40.0% | |
| TATCACCCATGAGTACACAT+TGG | - | chr3_4:54034050-54034069 | None:intergenic | 40.0% | |
| !! | GATATGGAAATCGGTTTTGG+TGG | - | chr3_4:54034160-54034179 | None:intergenic | 40.0% |
| !!! | CTTCATTCCCTTGTTTTGAC+TGG | + | chr3_4:54034210-54034229 | Msa0507080:CDS | 40.0% |
| ATCACGACCAGTCAAAACAA+GGG | - | chr3_4:54034220-54034239 | None:intergenic | 40.0% | |
| AATCACGACCAGTCAAAACA+AGG | - | chr3_4:54034221-54034240 | None:intergenic | 40.0% | |
| ! | TGCAGCTTCTATGATTTTGG+TGG | + | chr3_4:54034305-54034324 | Msa0507080:CDS | 40.0% |
| ! | GCCAGTTGAATAGAGTTGAT+TGG | - | chr3_4:54034335-54034354 | None:intergenic | 40.0% |
| ATCAACTCTATTCAACTGGC+TGG | + | chr3_4:54034335-54034354 | Msa0507080:CDS | 40.0% | |
| ACTAAGAGCAGCTAAAGTGA+GGG | - | chr3_4:54034388-54034407 | None:intergenic | 40.0% | |
| AAGCAAAAAGTCCACCTCAT+CGG | - | chr3_4:54034628-54034647 | None:intergenic | 40.0% | |
| TTTGCTTCAAAACTCACCCT+CGG | + | chr3_4:54034641-54034660 | Msa0507080:CDS | 40.0% | |
| ACGACAGACAAATTCAAGAC+AGG | + | chr3_4:54033469-54033488 | Msa0507080:CDS | 40.0% | |
| ATCCTCTTTGGCGTTCAAAA+AGG | - | chr3_4:54033535-54033554 | None:intergenic | 40.0% | |
| GCAAGTTTGAACATCCTCTT+TGG | - | chr3_4:54033547-54033566 | None:intergenic | 40.0% | |
| ! | CCAGAGATTGATCCATCTTT+TGG | - | chr3_4:54033577-54033596 | None:intergenic | 40.0% |
| CCAAAAGATGGATCAATCTC+TGG | + | chr3_4:54033574-54033593 | Msa0507080:CDS | 40.0% | |
| GTGTTGGACATTGTGTGAAA+AGG | - | chr3_4:54033773-54033792 | None:intergenic | 40.0% | |
| ! | TGAGATGAGAAGAAGCATGA+TGG | - | chr3_4:54033829-54033848 | None:intergenic | 40.0% |
| ! | GTAAATATTTGTTGCCAGCG+AGG | - | chr3_4:54033898-54033917 | None:intergenic | 40.0% |
| ATCGACCAATGTGTACTCAT+GGG | + | chr3_4:54034042-54034061 | Msa0507080:CDS | 40.0% | |
| TATCACCCATGAGTACACAT+TGG | - | chr3_4:54034050-54034069 | None:intergenic | 40.0% | |
| !! | GATATGGAAATCGGTTTTGG+TGG | - | chr3_4:54034160-54034179 | None:intergenic | 40.0% |
| !!! | CTTCATTCCCTTGTTTTGAC+TGG | + | chr3_4:54034210-54034229 | Msa0507080:CDS | 40.0% |
| ATCACGACCAGTCAAAACAA+GGG | - | chr3_4:54034220-54034239 | None:intergenic | 40.0% | |
| AATCACGACCAGTCAAAACA+AGG | - | chr3_4:54034221-54034240 | None:intergenic | 40.0% | |
| ! | TGCAGCTTCTATGATTTTGG+TGG | + | chr3_4:54034305-54034324 | Msa0507080:CDS | 40.0% |
| ! | GCCAGTTGAATAGAGTTGAT+TGG | - | chr3_4:54034335-54034354 | None:intergenic | 40.0% |
| ATCAACTCTATTCAACTGGC+TGG | + | chr3_4:54034335-54034354 | Msa0507080:CDS | 40.0% | |
| ACTAAGAGCAGCTAAAGTGA+GGG | - | chr3_4:54034388-54034407 | None:intergenic | 40.0% | |
| AAGCAAAAAGTCCACCTCAT+CGG | - | chr3_4:54034628-54034647 | None:intergenic | 40.0% | |
| TTTGCTTCAAAACTCACCCT+CGG | + | chr3_4:54034641-54034660 | Msa0507080:CDS | 40.0% | |
| TCAAGACAGGCTCAGTGAAT+TGG | + | chr3_4:54033482-54033501 | Msa0507080:CDS | 45.0% | |
| ! | CTCCTTTTTGAACGCCAAAG+AGG | + | chr3_4:54033530-54033549 | Msa0507080:CDS | 45.0% |
| GGATATCAGTTGAGTGATCG+CGG | - | chr3_4:54033686-54033705 | None:intergenic | 45.0% | |
| ACTTCTGTGCAAAGAGAGTG+TGG | - | chr3_4:54033707-54033726 | None:intergenic | 45.0% | |
| TTGACTTCTCTCAGTCTTGC+TGG | + | chr3_4:54033853-54033872 | Msa0507080:intron | 45.0% | |
| CATCGACCAATGTGTACTCA+TGG | + | chr3_4:54034041-54034060 | Msa0507080:CDS | 45.0% | |
| CACTAAGAGCAGCTAAAGTG+AGG | - | chr3_4:54034389-54034408 | None:intergenic | 45.0% | |
| GGACAAGAACCTAAGCAATC+AGG | - | chr3_4:54034509-54034528 | None:intergenic | 45.0% | |
| ! | AGTGGTGTACAACCGTTTTG+CGG | + | chr3_4:54034596-54034615 | Msa0507080:CDS | 45.0% |
| AAAAAGTCCACCTCATCGGT+AGG | - | chr3_4:54034624-54034643 | None:intergenic | 45.0% | |
| !! | CAAAGGTTGGCTTCATCAAG+AGG | + | chr3_4:54034664-54034683 | Msa0507080:CDS | 45.0% |
| TCAAGACAGGCTCAGTGAAT+TGG | + | chr3_4:54033482-54033501 | Msa0507080:CDS | 45.0% | |
| ! | CTCCTTTTTGAACGCCAAAG+AGG | + | chr3_4:54033530-54033549 | Msa0507080:CDS | 45.0% |
| GGATATCAGTTGAGTGATCG+CGG | - | chr3_4:54033686-54033705 | None:intergenic | 45.0% | |
| ACTTCTGTGCAAAGAGAGTG+TGG | - | chr3_4:54033707-54033726 | None:intergenic | 45.0% | |
| TTGACTTCTCTCAGTCTTGC+TGG | + | chr3_4:54033853-54033872 | Msa0507080:intron | 45.0% | |
| CATCGACCAATGTGTACTCA+TGG | + | chr3_4:54034041-54034060 | Msa0507080:CDS | 45.0% | |
| CACTAAGAGCAGCTAAAGTG+AGG | - | chr3_4:54034389-54034408 | None:intergenic | 45.0% | |
| GGACAAGAACCTAAGCAATC+AGG | - | chr3_4:54034509-54034528 | None:intergenic | 45.0% | |
| ! | AGTGGTGTACAACCGTTTTG+CGG | + | chr3_4:54034596-54034615 | Msa0507080:CDS | 45.0% |
| AAAAAGTCCACCTCATCGGT+AGG | - | chr3_4:54034624-54034643 | None:intergenic | 45.0% | |
| !! | CAAAGGTTGGCTTCATCAAG+AGG | + | chr3_4:54034664-54034683 | Msa0507080:CDS | 45.0% |
| AGACACGAAGCCAACGTAAG+AGG | + | chr3_4:54033436-54033455 | Msa0507080:CDS | 50.0% | |
| CCTTACGTTGCCTCTTACGT+TGG | - | chr3_4:54033449-54033468 | None:intergenic | 50.0% | |
| CCAACGTAAGAGGCAACGTA+AGG | + | chr3_4:54033446-54033465 | Msa0507080:CDS | 50.0% | |
| GAGACAGGGTGGTTAATGCT+GGG | - | chr3_4:54033942-54033961 | None:intergenic | 50.0% | |
| AGAGACAGGGTGGTTAATGC+TGG | - | chr3_4:54033943-54033962 | None:intergenic | 50.0% | |
| !! | AAGAGCATCTGTACGACGCA+TGG | - | chr3_4:54034136-54034155 | None:intergenic | 50.0% |
| ! | CTCTATTCAACTGGCTGGCT+TGG | + | chr3_4:54034340-54034359 | Msa0507080:CDS | 50.0% |
| ! | CATCGGTAGGTACCGCAAAA+CGG | - | chr3_4:54034611-54034630 | None:intergenic | 50.0% |
| ! | TTTTGCGGTACCTACCGATG+AGG | + | chr3_4:54034611-54034630 | Msa0507080:CDS | 50.0% |
| TCAAAACTCACCCTCGGCAA+AGG | + | chr3_4:54034647-54034666 | Msa0507080:CDS | 50.0% | |
| ATGAAGCCAACCTTTGCCGA+GGG | - | chr3_4:54034660-54034679 | None:intergenic | 50.0% | |
| AGACACGAAGCCAACGTAAG+AGG | + | chr3_4:54033436-54033455 | Msa0507080:CDS | 50.0% | |
| CCTTACGTTGCCTCTTACGT+TGG | - | chr3_4:54033449-54033468 | None:intergenic | 50.0% | |
| CCAACGTAAGAGGCAACGTA+AGG | + | chr3_4:54033446-54033465 | Msa0507080:CDS | 50.0% | |
| GAGACAGGGTGGTTAATGCT+GGG | - | chr3_4:54033942-54033961 | None:intergenic | 50.0% | |
| AGAGACAGGGTGGTTAATGC+TGG | - | chr3_4:54033943-54033962 | None:intergenic | 50.0% | |
| !! | AAGAGCATCTGTACGACGCA+TGG | - | chr3_4:54034136-54034155 | None:intergenic | 50.0% |
| ! | CTCTATTCAACTGGCTGGCT+TGG | + | chr3_4:54034340-54034359 | Msa0507080:CDS | 50.0% |
| ! | CATCGGTAGGTACCGCAAAA+CGG | - | chr3_4:54034611-54034630 | None:intergenic | 50.0% |
| ! | TTTTGCGGTACCTACCGATG+AGG | + | chr3_4:54034611-54034630 | Msa0507080:CDS | 50.0% |
| TCAAAACTCACCCTCGGCAA+AGG | + | chr3_4:54034647-54034666 | Msa0507080:CDS | 50.0% | |
| ATGAAGCCAACCTTTGCCGA+GGG | - | chr3_4:54034660-54034679 | None:intergenic | 50.0% | |
| ! | AAGGTGCTTCAGAGACAGGG+TGG | - | chr3_4:54033953-54033972 | None:intergenic | 55.0% |
| ! | GGCAAGGTGCTTCAGAGACA+GGG | - | chr3_4:54033956-54033975 | None:intergenic | 55.0% |
| ! | AGGCAAGGTGCTTCAGAGAC+AGG | - | chr3_4:54033957-54033976 | None:intergenic | 55.0% |
| AACTCACCCTCGGCAAAGGT+TGG | + | chr3_4:54034651-54034670 | Msa0507080:CDS | 55.0% | |
| GATGAAGCCAACCTTTGCCG+AGG | - | chr3_4:54034661-54034680 | None:intergenic | 55.0% | |
| ! | AAGGTGCTTCAGAGACAGGG+TGG | - | chr3_4:54033953-54033972 | None:intergenic | 55.0% |
| ! | GGCAAGGTGCTTCAGAGACA+GGG | - | chr3_4:54033956-54033975 | None:intergenic | 55.0% |
| ! | AGGCAAGGTGCTTCAGAGAC+AGG | - | chr3_4:54033957-54033976 | None:intergenic | 55.0% |
| AACTCACCCTCGGCAAAGGT+TGG | + | chr3_4:54034651-54034670 | Msa0507080:CDS | 55.0% | |
| GATGAAGCCAACCTTTGCCG+AGG | - | chr3_4:54034661-54034680 | None:intergenic | 55.0% | |
| TGCGGTACCTACCGATGAGG+TGG | + | chr3_4:54034614-54034633 | Msa0507080:CDS | 60.0% | |
| TGCGGTACCTACCGATGAGG+TGG | + | chr3_4:54034614-54034633 | Msa0507080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 54033429 | 54034830 | 54033429 | ID=Msa0507080;Name=Msa0507080 |
| chr3_4 | mRNA | 54033429 | 54034830 | 54033429 | ID=Msa0507080-mRNA-1;Parent=Msa0507080;Name=Msa0507080-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0.5|0.33|0.66|1|1|3|141|335 |
| chr3_4 | exon | 54033429 | 54033724 | 54033429 | ID=Msa0507080-mRNA-1:exon:12001;Parent=Msa0507080-mRNA-1 |
| chr3_4 | exon | 54033867 | 54034407 | 54033867 | ID=Msa0507080-mRNA-1:exon:12002;Parent=Msa0507080-mRNA-1 |
| chr3_4 | exon | 54034519 | 54034830 | 54034519 | ID=Msa0507080-mRNA-1:exon:12003;Parent=Msa0507080-mRNA-1 |
| chr3_4 | CDS | 54033429 | 54033724 | 54033429 | ID=Msa0507080-mRNA-1:cds;Parent=Msa0507080-mRNA-1 |
| chr3_4 | CDS | 54033867 | 54034407 | 54033867 | ID=Msa0507080-mRNA-1:cds;Parent=Msa0507080-mRNA-1 |
| chr3_4 | CDS | 54034519 | 54034689 | 54034519 | ID=Msa0507080-mRNA-1:cds;Parent=Msa0507080-mRNA-1 |
| chr3_4 | three_prime_UTR | 54034690 | 54034830 | 54034690 | ID=Msa0507080-mRNA-1:three_prime_utr;Parent=Msa0507080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
